AlfalfaGEDB | Msa0644270

M. sativa cultivar zhongmu-4 / Msa0644270

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644270	XP_013456108.1	95.252	337	12	2	1	336	1	334	0.0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644270	sp\|Q9M2U1\|DOF36_ARATH	38.527	353	138	13	1	324	1	303	1.38e-50	174

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644270	A0A072UK58	95.252	337	12	2	1	336	1	334	0.0	585

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TFs/TRs:

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Gene ID	Type	Classification
Msa0644270	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0205440	Msa0644270	0.811959	5.392102e-51	-8.615850e-47
Msa0286940	Msa0644270	0.816808	4.568378e-52	-8.615850e-47
Msa0548320	Msa0644270	0.913438	6.156648e-84	-8.615850e-47
Msa0603250	Msa0644270	0.947356	7.888520e-106	-8.615850e-47
Msa0644270	Msa0684070	0.884759	1.457568e-71	-8.615850e-47
Msa0644270	Msa0746230	0.815955	7.091184e-52	-8.615850e-47
Msa0644270	Msa1166040	0.806105	9.666313e-50	-8.615850e-47
Msa0644270	Msa1360490	0.800216	1.599140e-48	-8.615850e-47
Msa0644270	Msa1396330	0.806566	7.728822e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644270	MtrunA17_Chr4g0031411	95.252	337	12	2	1	336	1	334	0.0	585
Msa0644270	MtrunA17_Chr7g0237921	44.144	333	129	10	1	312	1	297	1.28e-61	200
Msa0644270	MtrunA17_Chr2g0328021	38.889	360	124	15	1	336	1	288	3.73e-57	187
Msa0644270	MtrunA17_Chr4g0010151	38.857	350	154	12	1	317	1	323	1.60e-55	185
Msa0644270	MtrunA17_Chr7g0223311	59.028	144	52	4	1	139	1	142	1.45e-46	161
Msa0644270	MtrunA17_Chr5g0411951	87.500	56	7	0	70	125	38	93	9.29e-33	124
Msa0644270	MtrunA17_Chr3g0117601	54.867	113	44	3	48	160	37	142	1.32e-32	124
Msa0644270	MtrunA17_Chr4g0047001	66.667	81	23	1	76	156	56	132	4.71e-32	123
Msa0644270	MtrunA17_Chr2g0326001	80.328	61	12	0	69	129	34	94	1.31e-31	120
Msa0644270	MtrunA17_Chr8g0374251	60.674	89	26	1	75	163	68	147	1.51e-31	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644270	AT3G55370.1	38.527	353	138	13	1	324	1	303	1.40e-51	174
Msa0644270	AT3G55370.2	42.164	268	104	8	1	251	1	234	2.41e-51	174
Msa0644270	AT3G55370.3	39.809	314	118	11	32	324	85	348	7.53e-49	168
Msa0644270	AT1G07640.1	42.308	286	145	10	57	335	3	275	1.39e-48	164
Msa0644270	AT1G07640.2	42.105	285	147	9	57	335	59	331	5.86e-48	164
Msa0644270	AT1G07640.3	42.105	285	147	9	57	335	67	339	9.70e-48	164
Msa0644270	AT2G37590.1	53.846	156	32	2	1	129	1	143	8.72e-47	161
Msa0644270	AT2G28810.1	36.685	368	160	15	1	332	1	331	1.21e-45	159
Msa0644270	AT5G02460.1	88.158	76	9	0	54	129	74	149	5.04e-44	156
Msa0644270	AT2G28810.2	38.776	294	125	11	57	332	58	314	2.14e-42	150

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Find 97 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATCAATTACTAGA+AGG	0.455741	4_3:-47993912	None:intergenic
AACAACAACAAGATCATATG+GGG	0.646211	4_3:+47993398	Msa0644270:CDS
AACATTGAAGCTGCAGCATC+TGG	0.352153	4_3:+47993592	Msa0644270:CDS
AATCTATCAAGAACATCCCT+TGG	0.539894	4_3:+47993691	Msa0644270:CDS
AATCTGAGTCGTTATGTCGT+TGG	0.570962	4_3:+47993322	Msa0644270:CDS
AATTCCTAACCTACCCTTCA+TGG	0.365060	4_3:+47993288	Msa0644270:CDS
AATTGCTGCAAATTACGCCA+TGG	0.629104	4_3:-47993502	None:intergenic
ACAACAACAACAAGATCATA+TGG	0.370266	4_3:+47993396	Msa0644270:CDS
ACCAACAACAATACTATTCT+TGG	0.250684	4_3:+47993731	Msa0644270:CDS
ACCTGGTGGTGCCAATTAGG+AGG	0.541280	4_3:-47992634	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATAGAAGAGAAAACCA+TGG	-	chr4_3:47992602-47992621	None:intergenic	30.0%
GAAGTAGCAAAATTTAGTGT+TGG	-	chr4_3:47993032-47993051	None:intergenic	30.0%
CAATTAGTTCATGATGAGAA+GGG	-	chr4_3:47993249-47993268	None:intergenic	30.0%
ACAACAACAACAAGATCATA+TGG	+	chr4_3:47993396-47993415	Msa0644270:CDS	30.0%
CAACAACAACAAGATCATAT+GGG	+	chr4_3:47993397-47993416	Msa0644270:CDS	30.0%
AACAACAACAAGATCATATG+GGG	+	chr4_3:47993398-47993417	Msa0644270:CDS	30.0%
AGATATAGCTTCAAACTCTA+GGG	+	chr4_3:47993624-47993643	Msa0644270:CDS	30.0%
ACCAACAACAATACTATTCT+TGG	+	chr4_3:47993731-47993750	Msa0644270:CDS	30.0%
TCCAAGAATAGTATTGTTGT+TGG	-	chr4_3:47993735-47993754	None:intergenic	30.0%
TCATCTCTTATAAATTTGGC+CGG	+	chr4_3:47993780-47993799	Msa0644270:exon	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	47992591	47994093	47992591	ID=Msa0644270;Name=Msa0644270
chr4_3	mRNA	47992591	47994093	47992591	ID=Msa0644270-mRNA-1;Parent=Msa0644270;Name=Msa0644270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=10\|1\|1\|1\|1\|1\|2\|301\|336
chr4_3	exon	47992591	47992654	47992591	ID=Msa0644270-mRNA-1:exon:11380;Parent=Msa0644270-mRNA-1
chr4_3	exon	47992836	47994093	47992836	ID=Msa0644270-mRNA-1:exon:11381;Parent=Msa0644270-mRNA-1
chr4_3	five_prime_UTR	47992591	47992600	47992591	ID=Msa0644270-mRNA-1:five_prime_utr;Parent=Msa0644270-mRNA-1
chr4_3	CDS	47992601	47992654	47992601	ID=Msa0644270-mRNA-1:cds;Parent=Msa0644270-mRNA-1
chr4_3	CDS	47992836	47993792	47992836	ID=Msa0644270-mRNA-1:cds;Parent=Msa0644270-mRNA-1
chr4_3	three_prime_UTR	47993793	47994093	47993793	ID=Msa0644270-mRNA-1:three_prime_utr;Parent=Msa0644270-mRNA-1

Gene Sequence

>Msa0644270

ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCTCCTAATTGGCACCACCAGCAACCAAATCATCAACAAGCAAATGGAAGCAATAACACTCAACTTCTTCCACCTTTACCACCTCAAGTGGGAGGTAGTACTGGTGGCGGTGGTACTATGGGCTCGATCAGACCAGGCTCCATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCAGAACCAGCGCTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCAGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAAAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAACTCTCAAGAAAAACAAACTTCCCCATCAAGTGCAATCCCTTCTCATCATGAACTAATTGGTCATCAGTTACCACAAACAATTCCTAACCTACCCTTCATGGCCTCGATGCAGAATCTGAGTCGTTATGTCGTTGGAAACGTTAACATGGGACTTGGTTTGCGTGAGATCCAAGAACAACATCAACAACAACAACAACAAGATCATATGGGGTTTCAAATTGGTATTGGTAATGGTAACTCAACTTCTGTTTCTGTTTCTGCTTCTGCTGTTGCTGGAGGTGTTGGAGTTGAACCATGGCGTAATTTGCAGCAATTTCCTTTCTTGAATACTTTTGAATCAAACTCTGCTGGAAATAATTCATACACTTTTCATGGAGAAAGTAACATTGAAGCTGCAGCATCTGGATTTGTTGGAGATATAGCTTCAAACTCTAGGGCTAATCAAGAGCCACCGGTTAAAATGGAAGAAAATCGAGCTTTAAATCTATCAAGAACATCCCTTGGTGTCTCTGAACATAATAACCAACAACAATACTATTCTTGGAATGATTTATCAGGCTCTTCAACTACTCATCTCTTATAA

Protein sequence

>Msa0644270

MVFSSIQGYVDPPNWHHQQPNHQQANGSNNTQLLPPLPPQVGGSTGGGGTMGSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSQEKQTSPSSAIPSHHELIGHQLPQTIPNLPFMASMQNLSRYVVGNVNMGLGLREIQEQHQQQQQQDHMGFQIGIGNGNSTSVSVSASAVAGGVGVEPWRNLQQFPFLNTFESNSAGNNSYTFHGESNIEAAASGFVGDIASNSRANQEPPVKMEENRALNLSRTSLGVSEHNNQQQYYSWNDLSGSSTTHLL*