AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548320 MtrunA17_Chr4g0031411 95.536 336 12 2 1 335 1 334 0.0 586
Msa0548320 MtrunA17_Chr7g0237921 43.465 329 136 10 1 311 1 297 9.10e-62 200
Msa0548320 MtrunA17_Chr2g0328021 38.997 359 124 15 1 335 1 288 2.83e-57 187
Msa0548320 MtrunA17_Chr4g0010151 38.968 349 154 12 1 316 1 323 1.15e-55 185
Msa0548320 MtrunA17_Chr7g0223311 59.028 144 52 4 1 139 1 142 1.51e-46 161
Msa0548320 MtrunA17_Chr5g0411951 87.500 56 7 0 70 125 38 93 1.03e-32 124
Msa0548320 MtrunA17_Chr3g0117601 54.867 113 44 3 48 160 37 142 1.37e-32 124
Msa0548320 MtrunA17_Chr4g0047001 42.197 173 64 5 76 221 56 219 2.28e-32 124
Msa0548320 MtrunA17_Chr2g0326001 80.328 61 12 0 69 129 34 94 1.23e-31 120
Msa0548320 MtrunA17_Chr8g0374251 60.674 89 26 1 75 163 68 147 1.54e-31 121
Msa0548320 MtrunA17_Chr4g0030051 80.645 62 11 1 67 127 32 93 3.62e-31 119
Msa0548320 MtrunA17_Chr8g0346551 57.732 97 39 1 62 158 11 105 8.85e-31 117
Msa0548320 MtrunA17_Chr8g0367161 69.620 79 20 2 74 152 31 105 9.36e-31 119
Msa0548320 MtrunA17_Chr8g0374111 54.717 106 32 3 54 159 17 106 6.11e-30 114
Msa0548320 MtrunA17_Chr3g0127201 66.216 74 21 1 56 129 12 81 7.96e-30 115
Msa0548320 MtrunA17_Chr1g0188851 60.000 80 30 1 52 129 18 97 2.74e-29 114
Msa0548320 MtrunA17_Chr3g0126201 63.514 74 27 0 56 129 32 105 7.89e-29 113
Msa0548320 MtrunA17_Chr8g0341671 58.750 80 30 1 59 135 1 80 1.01e-28 110
Msa0548320 MtrunA17_Chr2g0282441 67.606 71 22 1 57 126 6 76 1.67e-28 112
Msa0548320 MtrunA17_Chr4g0061761 82.692 52 9 0 74 125 39 90 2.56e-28 112
Msa0548320 MtrunA17_Chr2g0282511 88.000 50 6 0 74 123 44 93 4.37e-28 111
Msa0548320 MtrunA17_Chr1g0177251 63.636 77 27 1 77 153 14 89 4.99e-28 110
Msa0548320 MtrunA17_Chr2g0308011 84.000 50 8 0 74 123 36 85 6.22e-27 105
Msa0548320 MtrunA17_Chr4g0047761 71.186 59 15 1 75 133 72 128 1.14e-24 102
Msa0548320 MtrunA17_Chr2g0282051 66.129 62 16 1 74 135 45 101 1.62e-24 100
Msa0548320 MtrunA17_Chr8g0355261 66.102 59 20 0 71 129 114 172 2.21e-24 102
Msa0548320 MtrunA17_Chr2g0283811 63.380 71 25 1 72 142 44 113 2.76e-24 97.1
Msa0548320 MtrunA17_Chr6g0460721 63.333 60 22 0 68 127 82 141 5.73e-24 100
Msa0548320 MtrunA17_Chr6g0453321 66.667 60 20 0 68 127 129 188 8.05e-24 101
Msa0548320 MtrunA17_Chr4g0042481 58.571 70 26 1 58 127 108 174 1.33e-23 100
Msa0548320 MtrunA17_Chr7g0254161 60.000 70 25 2 60 129 88 154 1.57e-23 100
Msa0548320 MtrunA17_Chr7g0217581 49.412 85 43 0 68 152 225 309 1.59e-23 101
Msa0548320 MtrunA17_Chr3g0092111 62.687 67 24 1 68 134 129 194 2.61e-23 100
Msa0548320 MtrunA17_Chr6g0460731 61.667 60 23 0 68 127 89 148 3.54e-23 98.6
Msa0548320 MtrunA17_Chr5g0417571 43.820 89 50 0 39 127 102 190 9.39e-22 94.0
Msa0548320 MtrunA17_Chr5g0417601 69.091 55 16 1 77 131 142 195 1.24e-20 91.7
Msa0548320 MtrunA17_Chr5g0417551 48.780 82 41 1 59 140 111 191 4.41e-20 90.1
Msa0548320 MtrunA17_Chr5g0417561 50.725 69 34 0 59 127 103 171 9.50e-20 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548320 AT3G55370.1 38.636 352 138 13 1 323 1 303 9.06e-52 174
Msa0548320 AT3G55370.2 42.322 267 104 8 1 250 1 234 1.74e-51 174
Msa0548320 AT1G07640.1 42.456 285 145 9 57 334 3 275 5.65e-50 168
Msa0548320 AT1G07640.2 42.254 284 147 8 57 334 59 331 2.43e-49 168
Msa0548320 AT1G07640.3 42.254 284 147 8 57 334 67 339 3.41e-49 168
Msa0548320 AT3G55370.3 39.936 313 118 11 32 323 85 348 5.11e-49 168
Msa0548320 AT2G37590.1 53.846 156 32 2 1 129 1 143 8.58e-47 161
Msa0548320 AT2G28810.1 37.815 357 170 15 1 331 1 331 4.11e-46 160
Msa0548320 AT5G02460.1 88.158 76 9 0 54 129 74 149 4.96e-44 156
Msa0548320 AT2G28810.2 40.283 283 135 11 57 331 58 314 7.89e-43 150
Msa0548320 AT5G60200.1 76.389 72 13 1 70 141 50 117 1.87e-34 127
Msa0548320 AT1G51700.1 58.889 90 29 1 70 159 28 109 1.20e-31 117
Msa0548320 AT5G60850.1 62.791 86 25 2 74 159 50 128 2.60e-31 120
Msa0548320 AT3G45610.1 53.409 88 39 1 70 155 35 122 3.06e-31 118
Msa0548320 AT4G38000.1 77.049 61 14 0 69 129 35 95 2.29e-30 116
Msa0548320 AT5G65590.1 81.034 58 11 0 75 132 41 98 4.67e-30 117
Msa0548320 AT3G21270.1 53.000 100 28 2 75 155 29 128 3.89e-29 111
Msa0548320 AT4G24060.1 50.000 112 56 0 69 180 47 158 1.96e-28 113
Msa0548320 AT1G28310.1 79.661 59 11 1 75 133 27 84 3.76e-28 111
Msa0548320 AT3G52440.1 70.588 68 16 1 77 144 27 90 4.16e-28 110
Msa0548320 AT3G52440.2 70.588 68 16 1 77 144 46 109 5.07e-28 110
Msa0548320 AT2G28510.1 73.846 65 13 1 74 138 47 107 5.38e-28 110
Msa0548320 AT1G28310.2 79.661 59 11 1 75 133 51 108 5.85e-28 111
Msa0548320 AT3G61850.2 58.889 90 29 2 71 156 58 143 2.25e-27 108
Msa0548320 AT3G61850.3 58.889 90 29 2 71 156 58 143 2.25e-27 108
Msa0548320 AT5G66940.1 50.000 100 36 2 56 144 2 98 2.40e-27 107
Msa0548320 AT3G61850.1 58.889 90 29 2 71 156 70 155 3.14e-27 108
Msa0548320 AT3G61850.5 58.889 90 29 2 71 156 58 143 3.16e-27 109
Msa0548320 AT1G21340.1 73.770 61 10 1 77 137 40 94 3.50e-27 107
Msa0548320 AT3G61850.4 58.889 90 29 2 71 156 70 155 3.86e-27 109
Msa0548320 AT4G21050.1 47.581 124 50 3 68 190 17 126 4.44e-27 106
Msa0548320 AT3G50410.1 70.690 58 17 0 75 132 30 87 1.44e-26 106
Msa0548320 AT2G46590.1 56.250 80 35 0 43 122 36 115 3.14e-26 107
Msa0548320 AT2G46590.2 56.250 80 35 0 43 122 48 127 3.53e-26 107
Msa0548320 AT4G00940.1 63.514 74 23 2 59 129 50 122 1.24e-25 104
Msa0548320 AT4G00940.3 63.514 74 23 2 59 129 50 122 1.24e-25 104
Msa0548320 AT4G00940.2 63.514 74 23 2 59 129 50 122 1.24e-25 104
Msa0548320 AT1G64620.1 66.176 68 23 0 56 123 30 97 4.25e-25 104
Msa0548320 AT1G47655.1 70.000 60 16 1 66 123 18 77 2.02e-24 99.4
Msa0548320 AT2G34140.1 58.442 77 28 2 53 129 39 111 3.78e-24 97.4
Msa0548320 AT1G29160.1 69.492 59 17 1 71 129 58 115 1.14e-23 96.3
Msa0548320 AT4G21040.1 56.250 80 30 1 77 156 27 101 3.52e-23 96.3
Msa0548320 AT5G39660.3 66.667 63 20 1 67 129 130 191 3.88e-23 100
Msa0548320 AT5G39660.1 66.667 63 20 1 67 129 130 191 3.88e-23 100
Msa0548320 AT5G39660.2 66.667 63 20 1 67 129 130 191 3.88e-23 100
Msa0548320 AT1G26790.1 54.412 68 31 0 60 127 96 163 4.08e-23 99.0
Msa0548320 AT5G62430.1 56.000 75 31 2 58 131 36 109 4.26e-23 97.8
Msa0548320 AT3G47500.1 65.000 60 21 0 68 127 103 162 8.46e-23 99.0
Msa0548320 AT1G69570.1 61.667 60 23 0 68 127 125 184 2.25e-22 97.1
Msa0548320 AT4G21080.1 63.492 63 18 1 77 139 27 84 7.83e-22 93.2
Msa0548320 AT5G62940.1 36.464 181 77 4 69 213 67 245 2.40e-19 88.2
Msa0548320 AT4G21030.1 54.098 61 25 1 68 128 17 74 2.07e-15 73.9

Find 114 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCATCTCTTATAAATT+TGG 0.183593 4_1:+42249864 Msa0548320:exon
GCAAGACATGTAGGCGTTAT+TGG 0.207030 4_1:+42249177 Msa0548320:CDS
AGTAATTTATGTACTATATA+TGG 0.208661 4_1:+42250047 Msa0548320:three_prime_UTR
GATGAGAAAATGAGGGAATA+AGG 0.213923 4_1:+42248493 Msa0548320:five_prime_UTR
GTTGTTGTTGATGTTGTTCT+TGG 0.217968 4_1:-42249469 None:intergenic
TCAAGAGCCACCGGTTAAAA+TGG 0.246428 4_1:+42249739 Msa0548320:CDS
TCTTGAGAGTTTGTTGAATT+AGG 0.247926 4_1:-42249287 None:intergenic
CCATTTGCTTGTTGATGATT+TGG 0.249048 4_1:-42248930 None:intergenic
ACCAACAACAATACTATTCT+TGG 0.250684 4_1:+42249819 Msa0548320:CDS
GTTTCTGCTTCTGCTGTTGC+TGG 0.257390 4_1:+42249551 Msa0548320:CDS
GATCATATGGGGTTTCAAAT+TGG 0.271163 4_1:+42249497 Msa0548320:CDS
TATTCTTGGAATGATTTATC+AGG 0.272738 4_1:+42249833 Msa0548320:CDS
TTTATAAAAGAAAACATAAA+AGG 0.276480 4_1:+42248657 Msa0548320:five_prime_UTR
TACTGGTGGCGGTGGTACTA+TGG 0.292815 4_1:+42249004 Msa0548320:CDS
TTTACCTGGTGGTGCCAATT+AGG 0.304320 4_1:-42248728 None:intergenic
CCTTCTCATCATGAACTAAT+TGG 0.327970 4_1:+42249338 Msa0548320:CDS
TTCATATCTTTGATCCATTC+CGG 0.333436 4_1:-42249887 None:intergenic
TGGATCAAAGATATGAAGTT+TGG 0.348175 4_1:+42249893 Msa0548320:three_prime_UTR
GTTATGTAGATCCTCCTAAT+TGG 0.350822 4_1:+42248714 Msa0548320:CDS
AACATTGAAGCTGCAGCATC+TGG 0.352153 4_1:+42249680 Msa0548320:CDS
TTCTCTTCTCTGTATTCCCT+TGG 0.355868 4_1:+42248596 Msa0548320:five_prime_UTR
AATTCCTAACCTACCCTTCA+TGG 0.365060 4_1:+42249379 Msa0548320:CDS
ACAACAACAACAAGATCATA+TGG 0.370266 4_1:+42249484 Msa0548320:CDS
TCTGCTGTTGCTGGAGGTGT+TGG 0.398368 4_1:+42249560 Msa0548320:CDS
TTTCAAATTGGTATTGGTAA+TGG 0.399190 4_1:+42249509 Msa0548320:CDS
TCCAAGAATAGTATTGTTGT+TGG 0.406762 4_1:-42249820 None:intergenic
ATGGGGTTTCAAATTGGTAT+TGG 0.408013 4_1:+42249503 Msa0548320:CDS
AATACAGAGAAGAGAAAGAA+AGG 0.409902 4_1:-42248589 None:intergenic
GTAATTTATGTACTATATAT+GGG 0.411722 4_1:+42250048 Msa0548320:three_prime_UTR
CTACGACACCCTCCACCAAC+TGG 0.417773 4_1:-42249227 None:intergenic
ATGAGAAAATGAGGGAATAA+GGG 0.423272 4_1:+42248494 Msa0548320:five_prime_UTR
GGACACTTTAGCGCTGGTTC+TGG 0.424523 4_1:-42249083 None:intergenic
TGAGAAGGGATTGCACTTGA+TGG 0.431346 4_1:-42249323 None:intergenic
CTGACGTTGTAATATCAATT+CGG 0.439770 4_1:+42250140 Msa0548320:three_prime_UTR
GCTCGATCAGCCATGGAGCC+TGG 0.444337 4_1:-42249038 None:intergenic
CCTCAAGTGGGAGGTAGTAC+TGG 0.448394 4_1:+42248987 Msa0548320:CDS
CCAAATCATCAACAAGCAAA+TGG 0.450966 4_1:+42248930 Msa0548320:CDS
GATATGAAGTTTGGAACGAT+TGG 0.451871 4_1:+42249902 Msa0548320:three_prime_UTR
TTGATGGCTCTTTAGGGAGA+TGG 0.453212 4_1:-42248631 None:intergenic
GCTGCAGCATCTGGATTTGT+TGG 0.454209 4_1:+42249689 Msa0548320:CDS
AAACAAAATCAATTACTAGA+AGG 0.455741 4_1:-42250000 None:intergenic
TCTTATAAATTTGGCCGGAA+TGG 0.459361 4_1:+42249873 Msa0548320:exon
GATTCAAAAGTATTCAAGAA+AGG 0.460724 4_1:-42249614 None:intergenic
CTTAGAAATGTTCCAGTTGG+TGG 0.472325 4_1:+42249215 Msa0548320:CDS
CTCGATCAGACCAGGCTCCA+TGG 0.475078 4_1:+42249028 Msa0548320:CDS
GAGATATAGCTTCAAACTCT+AGG 0.480948 4_1:+42249711 Msa0548320:CDS
CCTCCCACTTGAGGTGGTAA+AGG 0.483237 4_1:-42248978 None:intergenic
TTTAGCGCTGGTTCTGGTGG+TGG 0.483860 4_1:-42249077 None:intergenic
ATACAGAGAAGAGAAAGAAA+GGG 0.484195 4_1:-42248588 None:intergenic
GGTAGGTTAGGAATTGTTTG+TGG 0.484498 4_1:-42249371 None:intergenic
CAACAACAACAAGATCATAT+GGG 0.484986 4_1:+42249485 Msa0548320:CDS
AGCATTAAAGGAAGAGAGGA+GGG 0.487565 4_1:-42248559 None:intergenic
GAGGCCATGAAGGGTAGGTT+AGG 0.490552 4_1:-42249383 None:intergenic
AGAAATGTTCCAGTTGGTGG+AGG 0.497986 4_1:+42249218 Msa0548320:CDS
AAAGGAAGAGAGGAGGGAGG+AGG 0.506532 4_1:-42248553 None:intergenic
CCAATTAGTTCATGATGAGA+AGG 0.516486 4_1:-42249338 None:intergenic
CACTTTAGCGCTGGTTCTGG+TGG 0.522746 4_1:-42249080 None:intergenic
GAAGTAGCAAAATTTAGTGT+TGG 0.523027 4_1:-42249120 None:intergenic
TCCTCCTAATTGGCACCACC+AGG 0.528426 4_1:+42248724 Msa0548320:CDS
AAAGAGCATTAAAGGAAGAG+AGG 0.530419 4_1:-42248563 None:intergenic
ACTGGTGGCGGTGGTACTAT+GGG 0.530847 4_1:+42249005 Msa0548320:CDS
GGAAACGTTAACATGGGACT+TGG 0.531022 4_1:+42249434 Msa0548320:CDS
GAGAAGGGATTGCACTTGAT+GGG 0.532889 4_1:-42249322 None:intergenic
AGGAGGAAAGCAGCAATAAG+AGG 0.536872 4_1:-42248536 None:intergenic
TCATCTCTTATAAATTTGGC+CGG 0.539379 4_1:+42249868 Msa0548320:exon
AATCTATCAAGAACATCCCT+TGG 0.539894 4_1:+42249779 Msa0548320:CDS
CAACGAGGACACTTTAGCGC+TGG 0.540252 4_1:-42249089 None:intergenic
ACCTGGTGGTGCCAATTAGG+AGG 0.541280 4_1:-42248725 None:intergenic
TCTGCTTCTGCTGTTGCTGG+AGG 0.548891 4_1:+42249554 Msa0548320:CDS
GAGCATTAAAGGAAGAGAGG+AGG 0.549927 4_1:-42248560 None:intergenic
ATGGCTCTTTAGGGAGATGG+TGG 0.554378 4_1:-42248628 None:intergenic
AGATATAGCTTCAAACTCTA+GGG 0.556521 4_1:+42249712 Msa0548320:CDS
GGAGGTAGTACTGGTGGCGG+TGG 0.560481 4_1:+42248996 Msa0548320:CDS
ATTCTGCATCGAGGCCATGA+AGG 0.561082 4_1:-42249393 None:intergenic
AATCTGAGTCGTTATGTCGT+TGG 0.570962 4_1:+42249413 Msa0548320:CDS
CAATTAGTTCATGATGAGAA+GGG 0.573984 4_1:-42249337 None:intergenic
TGTCGTTGGAAACGTTAACA+TGG 0.575317 4_1:+42249427 Msa0548320:CDS
TCCACCTTTACCACCTCAAG+TGG 0.577272 4_1:+42248974 Msa0548320:CDS
ACTATGGGCTCGATCAGACC+AGG 0.580839 4_1:+42249020 Msa0548320:CDS
TTCTGCATCGAGGCCATGAA+GGG 0.581643 4_1:-42249392 None:intergenic
CCCACTTGAGGTGGTAAAGG+TGG 0.581750 4_1:-42248975 None:intergenic
ATTAAAGGAAGAGAGGAGGG+AGG 0.592350 4_1:-42248556 None:intergenic
GAAATGTTCCAGTTGGTGGA+GGG 0.594932 4_1:+42249219 Msa0548320:CDS
GCACTTAGAAATGTTCCAGT+TGG 0.600640 4_1:+42249212 Msa0548320:CDS
TATATTATTCAACTCAGTCA+TGG 0.602165 4_1:+42249950 Msa0548320:three_prime_UTR
AGAAGGGATTGCACTTGATG+GGG 0.604506 4_1:-42249321 None:intergenic
GTAGGCGTTATTGGACAAGA+GGG 0.605161 4_1:+42249186 Msa0548320:CDS
TAGGGCTAATCAAGAGCCAC+CGG 0.605644 4_1:+42249730 Msa0548320:CDS
GTCGTTGGAAACGTTAACAT+GGG 0.609381 4_1:+42249428 Msa0548320:CDS
GTCACTTCTGCAAGACATGT+AGG 0.611130 4_1:+42249168 Msa0548320:CDS
TGTAGGCGTTATTGGACAAG+AGG 0.616737 4_1:+42249185 Msa0548320:CDS
GCATCGAGGCCATGAAGGGT+AGG 0.623817 4_1:-42249388 None:intergenic
AATTGCTGCAAATTACGCCA+TGG 0.629104 4_1:-42249590 None:intergenic
TAAACGAGCTCGATCAGCCA+TGG 0.633447 4_1:-42249045 None:intergenic
CATGTCTTGCAGAAGTGACG+AGG 0.635723 4_1:-42249164 None:intergenic
GTGGGAGGTAGTACTGGTGG+CGG 0.638124 4_1:+42248993 Msa0548320:CDS
AACAACAACAAGATCATATG+GGG 0.646211 4_1:+42249486 Msa0548320:CDS
TATTATGTTCAGAGACACCA+AGG 0.647047 4_1:-42249796 None:intergenic
CCACCTTTACCACCTCAAGT+GGG 0.662217 4_1:+42248975 Msa0548320:CDS
CAAGTGGGAGGTAGTACTGG+TGG 0.664836 4_1:+42248990 Msa0548320:CDS
GTACTACCTCCCACTTGAGG+TGG 0.666584 4_1:-42248984 None:intergenic
TAGGCGTTATTGGACAAGAG+GGG 0.675252 4_1:+42249187 Msa0548320:CDS
AGGCGTTATTGGACAAGAGG+GGG 0.675862 4_1:+42249188 Msa0548320:CDS
ATGGTGGAGAATCAAACCAA+GGG 0.681127 4_1:-42248612 None:intergenic
CCAGTACTACCTCCCACTTG+AGG 0.681370 4_1:-42248987 None:intergenic
GATGGTGGAGAATCAAACCA+AGG 0.687483 4_1:-42248613 None:intergenic
CCTTTACCACCTCAAGTGGG+AGG 0.700568 4_1:+42248978 Msa0548320:CDS
GAGGTGTTGGAGTTGAACCA+TGG 0.701694 4_1:+42249573 Msa0548320:CDS
TGAGTTGAATAATATATGAG+TGG 0.703462 4_1:-42249943 None:intergenic
TTGAATAGAAGAGAAAACCA+TGG 0.707467 4_1:-42248690 None:intergenic
ATTATGTTCAGAGACACCAA+GGG 0.718424 4_1:-42249795 None:intergenic
AGAAGTGACGAGGTTGAGTG+AGG 0.724186 4_1:-42249154 None:intergenic
GTGTTGGTTGAATCGCAACG+AGG 0.733913 4_1:-42249104 None:intergenic
ACGACTCAGATTCTGCATCG+AGG 0.741695 4_1:-42249402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAAGAAAACATAAA+AGG + chr4_1:42248657-42248676 Msa0548320:five_prime_UTR 10.0%
!! ATTTAAAAAAATTATTGTGA+TGG - chr4_1:42248867-42248886 None:intergenic 10.0%
!! TTTATAAAAGAAAACATAAA+AGG + chr4_1:42248657-42248676 Msa0548320:five_prime_UTR 10.0%
!! ATTTAAAAAAATTATTGTGA+TGG - chr4_1:42248867-42248886 None:intergenic 10.0%
!!! ATAAGCTTCTTTTTTTTAAT+GGG - chr4_1:42248419-42248438 None:intergenic 15.0%
!!! TATAAGCTTCTTTTTTTTAA+TGG - chr4_1:42248420-42248439 None:intergenic 15.0%
!! ATTAAAAAAAAGAAGCTTAT+AGG + chr4_1:42248419-42248438 Msa0548320:five_prime_UTR 15.0%
!!! TTTCTTTTATAAAGTTTTGA+TGG - chr4_1:42248650-42248669 None:intergenic 15.0%
!! ATGGAAAGAAATTAAAAAAA+GGG - chr4_1:42248891-42248910 None:intergenic 15.0%
!!! GTTTATGTTTTTTTATTTCA+TGG + chr4_1:42250019-42250038 Msa0548320:three_prime_UTR 15.0%
!! AGTAATTTATGTACTATATA+TGG + chr4_1:42250047-42250066 Msa0548320:three_prime_UTR 15.0%
!! GTAATTTATGTACTATATAT+GGG + chr4_1:42250048-42250067 Msa0548320:three_prime_UTR 15.0%
!!! ATAAGCTTCTTTTTTTTAAT+GGG - chr4_1:42248419-42248438 None:intergenic 15.0%
!!! TATAAGCTTCTTTTTTTTAA+TGG - chr4_1:42248420-42248439 None:intergenic 15.0%
!! ATTAAAAAAAAGAAGCTTAT+AGG + chr4_1:42248419-42248438 Msa0548320:five_prime_UTR 15.0%
!!! TTTCTTTTATAAAGTTTTGA+TGG - chr4_1:42248650-42248669 None:intergenic 15.0%
!! ATGGAAAGAAATTAAAAAAA+GGG - chr4_1:42248891-42248910 None:intergenic 15.0%
!!! GTTTATGTTTTTTTATTTCA+TGG + chr4_1:42250019-42250038 Msa0548320:three_prime_UTR 15.0%
!! AGTAATTTATGTACTATATA+TGG + chr4_1:42250047-42250066 Msa0548320:three_prime_UTR 15.0%
!! GTAATTTATGTACTATATAT+GGG + chr4_1:42250048-42250067 Msa0548320:three_prime_UTR 15.0%
!!! TATATTTTTAGGGTTTTTAG+TGG - chr4_1:42248459-42248478 None:intergenic 20.0%
!! ATGAAAATTAAAACTTTACC+TGG - chr4_1:42248745-42248764 None:intergenic 20.0%
!!! TTCACTTTCTTTTTTGAATT+TGG - chr4_1:42248774-42248793 None:intergenic 20.0%
!! GATGGAAAGAAATTAAAAAA+AGG - chr4_1:42248892-42248911 None:intergenic 20.0%
!!! AATAATTCATACACTTTTCA+TGG + chr4_1:42249650-42249669 Msa0548320:CDS 20.0%
!! AAACAAAATCAATTACTAGA+AGG - chr4_1:42250003-42250022 None:intergenic 20.0%
!!! TATATTTTTAGGGTTTTTAG+TGG - chr4_1:42248459-42248478 None:intergenic 20.0%
!! ATGAAAATTAAAACTTTACC+TGG - chr4_1:42248745-42248764 None:intergenic 20.0%
!!! TTCACTTTCTTTTTTGAATT+TGG - chr4_1:42248774-42248793 None:intergenic 20.0%
!! GATGGAAAGAAATTAAAAAA+AGG - chr4_1:42248892-42248911 None:intergenic 20.0%
!!! AATAATTCATACACTTTTCA+TGG + chr4_1:42249650-42249669 Msa0548320:CDS 20.0%
!! AAACAAAATCAATTACTAGA+AGG - chr4_1:42250003-42250022 None:intergenic 20.0%
! AAAAAGAGATGAGAAAATGA+GGG + chr4_1:42248486-42248505 Msa0548320:five_prime_UTR 25.0%
!! TAAAAGGATTTTCAATACCA+TGG + chr4_1:42248673-42248692 Msa0548320:exon 25.0%
! AAAATTAAAACTTTACCTGG+TGG - chr4_1:42248742-42248761 None:intergenic 25.0%
! ATATTCAAGAAGATGAAGTA+AGG - chr4_1:42248831-42248850 None:intergenic 25.0%
!! TTGAATTAGGAGATTTTGAA+CGG - chr4_1:42249277-42249296 None:intergenic 25.0%
!!! TTTCAAATTGGTATTGGTAA+TGG + chr4_1:42249509-42249528 Msa0548320:CDS 25.0%
!!! GATTCAAAAGTATTCAAGAA+AGG - chr4_1:42249617-42249636 None:intergenic 25.0%
! TATTCTTGGAATGATTTATC+AGG + chr4_1:42249833-42249852 Msa0548320:CDS 25.0%
! CTACTCATCTCTTATAAATT+TGG + chr4_1:42249864-42249883 Msa0548320:exon 25.0%
!! TGAGTTGAATAATATATGAG+TGG - chr4_1:42249946-42249965 None:intergenic 25.0%
! TATATTATTCAACTCAGTCA+TGG + chr4_1:42249950-42249969 Msa0548320:three_prime_UTR 25.0%
! AAAAAGAGATGAGAAAATGA+GGG + chr4_1:42248486-42248505 Msa0548320:five_prime_UTR 25.0%
!! TAAAAGGATTTTCAATACCA+TGG + chr4_1:42248673-42248692 Msa0548320:exon 25.0%
! AAAATTAAAACTTTACCTGG+TGG - chr4_1:42248742-42248761 None:intergenic 25.0%
! ATATTCAAGAAGATGAAGTA+AGG - chr4_1:42248831-42248850 None:intergenic 25.0%
!! TTGAATTAGGAGATTTTGAA+CGG - chr4_1:42249277-42249296 None:intergenic 25.0%
!!! TTTCAAATTGGTATTGGTAA+TGG + chr4_1:42249509-42249528 Msa0548320:CDS 25.0%
!!! GATTCAAAAGTATTCAAGAA+AGG - chr4_1:42249617-42249636 None:intergenic 25.0%
! TATTCTTGGAATGATTTATC+AGG + chr4_1:42249833-42249852 Msa0548320:CDS 25.0%
! CTACTCATCTCTTATAAATT+TGG + chr4_1:42249864-42249883 Msa0548320:exon 25.0%
!! TGAGTTGAATAATATATGAG+TGG - chr4_1:42249946-42249965 None:intergenic 25.0%
! TATATTATTCAACTCAGTCA+TGG + chr4_1:42249950-42249969 Msa0548320:three_prime_UTR 25.0%
!!! GCTTCTTTTTTTTAATGGGT+TGG - chr4_1:42248415-42248434 None:intergenic 30.0%
!!! ATTTTTAGGGTTTTTAGTGG+AGG - chr4_1:42248456-42248475 None:intergenic 30.0%
CAAAAAGAGATGAGAAAATG+AGG + chr4_1:42248485-42248504 Msa0548320:five_prime_UTR 30.0%
ATGAGAAAATGAGGGAATAA+GGG + chr4_1:42248494-42248513 Msa0548320:five_prime_UTR 30.0%
!! AAAGGGAAAAAGAGCATTAA+AGG - chr4_1:42248574-42248593 None:intergenic 30.0%
ATACAGAGAAGAGAAAGAAA+GGG - chr4_1:42248591-42248610 None:intergenic 30.0%
AATACAGAGAAGAGAAAGAA+AGG - chr4_1:42248592-42248611 None:intergenic 30.0%
!! AAAGTTTTGATGGCTCTTTA+GGG - chr4_1:42248640-42248659 None:intergenic 30.0%
!! TAAAGTTTTGATGGCTCTTT+AGG - chr4_1:42248641-42248660 None:intergenic 30.0%
TTGAATAGAAGAGAAAACCA+TGG - chr4_1:42248693-42248712 None:intergenic 30.0%
! ATGGTTTTCTCTTCTATTCA+AGG + chr4_1:42248692-42248711 Msa0548320:CDS 30.0%
GAAGTAGCAAAATTTAGTGT+TGG - chr4_1:42249123-42249142 None:intergenic 30.0%
!! TCTTGAGAGTTTGTTGAATT+AGG - chr4_1:42249290-42249309 None:intergenic 30.0%
CAATTAGTTCATGATGAGAA+GGG - chr4_1:42249340-42249359 None:intergenic 30.0%
ACAACAACAACAAGATCATA+TGG + chr4_1:42249484-42249503 Msa0548320:CDS 30.0%
CAACAACAACAAGATCATAT+GGG + chr4_1:42249485-42249504 Msa0548320:CDS 30.0%
AACAACAACAAGATCATATG+GGG + chr4_1:42249486-42249505 Msa0548320:CDS 30.0%
AGATATAGCTTCAAACTCTA+GGG + chr4_1:42249712-42249731 Msa0548320:CDS 30.0%
!! CGATTTTCTTCCATTTTAAC+CGG - chr4_1:42249752-42249771 None:intergenic 30.0%
ACCAACAACAATACTATTCT+TGG + chr4_1:42249819-42249838 Msa0548320:CDS 30.0%
TCCAAGAATAGTATTGTTGT+TGG - chr4_1:42249823-42249842 None:intergenic 30.0%
TCATCTCTTATAAATTTGGC+CGG + chr4_1:42249868-42249887 Msa0548320:exon 30.0%
TTCATATCTTTGATCCATTC+CGG - chr4_1:42249890-42249909 None:intergenic 30.0%
TGGATCAAAGATATGAAGTT+TGG + chr4_1:42249893-42249912 Msa0548320:three_prime_UTR 30.0%
CTGACGTTGTAATATCAATT+CGG + chr4_1:42250140-42250159 Msa0548320:three_prime_UTR 30.0%
!! AATGGGTTGGTCTTATAAAT+TGG - chr4_1:42248402-42248421 None:intergenic 30.0%
!!! GCTTCTTTTTTTTAATGGGT+TGG - chr4_1:42248415-42248434 None:intergenic 30.0%
!!! ATTTTTAGGGTTTTTAGTGG+AGG - chr4_1:42248456-42248475 None:intergenic 30.0%
CAAAAAGAGATGAGAAAATG+AGG + chr4_1:42248485-42248504 Msa0548320:five_prime_UTR 30.0%
ATGAGAAAATGAGGGAATAA+GGG + chr4_1:42248494-42248513 Msa0548320:five_prime_UTR 30.0%
!! AAAGGGAAAAAGAGCATTAA+AGG - chr4_1:42248574-42248593 None:intergenic 30.0%
ATACAGAGAAGAGAAAGAAA+GGG - chr4_1:42248591-42248610 None:intergenic 30.0%
AATACAGAGAAGAGAAAGAA+AGG - chr4_1:42248592-42248611 None:intergenic 30.0%
!! AAAGTTTTGATGGCTCTTTA+GGG - chr4_1:42248640-42248659 None:intergenic 30.0%
!! TAAAGTTTTGATGGCTCTTT+AGG - chr4_1:42248641-42248660 None:intergenic 30.0%
TTGAATAGAAGAGAAAACCA+TGG - chr4_1:42248693-42248712 None:intergenic 30.0%
! ATGGTTTTCTCTTCTATTCA+AGG + chr4_1:42248692-42248711 Msa0548320:CDS 30.0%
GAAGTAGCAAAATTTAGTGT+TGG - chr4_1:42249123-42249142 None:intergenic 30.0%
!! TCTTGAGAGTTTGTTGAATT+AGG - chr4_1:42249290-42249309 None:intergenic 30.0%
CAATTAGTTCATGATGAGAA+GGG - chr4_1:42249340-42249359 None:intergenic 30.0%
ACAACAACAACAAGATCATA+TGG + chr4_1:42249484-42249503 Msa0548320:CDS 30.0%
CAACAACAACAAGATCATAT+GGG + chr4_1:42249485-42249504 Msa0548320:CDS 30.0%
AACAACAACAAGATCATATG+GGG + chr4_1:42249486-42249505 Msa0548320:CDS 30.0%
AGATATAGCTTCAAACTCTA+GGG + chr4_1:42249712-42249731 Msa0548320:CDS 30.0%
!! CGATTTTCTTCCATTTTAAC+CGG - chr4_1:42249752-42249771 None:intergenic 30.0%
ACCAACAACAATACTATTCT+TGG + chr4_1:42249819-42249838 Msa0548320:CDS 30.0%
TCCAAGAATAGTATTGTTGT+TGG - chr4_1:42249823-42249842 None:intergenic 30.0%
TCATCTCTTATAAATTTGGC+CGG + chr4_1:42249868-42249887 Msa0548320:exon 30.0%
TTCATATCTTTGATCCATTC+CGG - chr4_1:42249890-42249909 None:intergenic 30.0%
TGGATCAAAGATATGAAGTT+TGG + chr4_1:42249893-42249912 Msa0548320:three_prime_UTR 30.0%
CTGACGTTGTAATATCAATT+CGG + chr4_1:42250140-42250159 Msa0548320:three_prime_UTR 30.0%
GATGAGAAAATGAGGGAATA+AGG + chr4_1:42248493-42248512 Msa0548320:five_prime_UTR 35.0%
!! AAAGAGCATTAAAGGAAGAG+AGG - chr4_1:42248566-42248585 None:intergenic 35.0%
GTTATGTAGATCCTCCTAAT+TGG + chr4_1:42248714-42248733 Msa0548320:CDS 35.0%
TTGCTGCAGGTTAAAATAGA+TGG - chr4_1:42248910-42248929 None:intergenic 35.0%
!! CCATTTGCTTGTTGATGATT+TGG - chr4_1:42248933-42248952 None:intergenic 35.0%
CCAAATCATCAACAAGCAAA+TGG + chr4_1:42248930-42248949 Msa0548320:CDS 35.0%
CCAATTAGTTCATGATGAGA+AGG - chr4_1:42249341-42249360 None:intergenic 35.0%
CCTTCTCATCATGAACTAAT+TGG + chr4_1:42249338-42249357 Msa0548320:CDS 35.0%
! GTTGTTGTTGATGTTGTTCT+TGG - chr4_1:42249472-42249491 None:intergenic 35.0%
GATCATATGGGGTTTCAAAT+TGG + chr4_1:42249497-42249516 Msa0548320:CDS 35.0%
ATGGGGTTTCAAATTGGTAT+TGG + chr4_1:42249503-42249522 Msa0548320:CDS 35.0%
! ACTTTTGAATCAAACTCTGC+TGG + chr4_1:42249626-42249645 Msa0548320:CDS 35.0%
GAGATATAGCTTCAAACTCT+AGG + chr4_1:42249711-42249730 Msa0548320:CDS 35.0%
!! TTTTCTTCCATTTTAACCGG+TGG - chr4_1:42249749-42249768 None:intergenic 35.0%
AATCTATCAAGAACATCCCT+TGG + chr4_1:42249779-42249798 Msa0548320:CDS 35.0%
ATTATGTTCAGAGACACCAA+GGG - chr4_1:42249798-42249817 None:intergenic 35.0%
TATTATGTTCAGAGACACCA+AGG - chr4_1:42249799-42249818 None:intergenic 35.0%
TCTTATAAATTTGGCCGGAA+TGG + chr4_1:42249873-42249892 Msa0548320:exon 35.0%
! GATATGAAGTTTGGAACGAT+TGG + chr4_1:42249902-42249921 Msa0548320:three_prime_UTR 35.0%
GATGAGAAAATGAGGGAATA+AGG + chr4_1:42248493-42248512 Msa0548320:five_prime_UTR 35.0%
!! AAAGAGCATTAAAGGAAGAG+AGG - chr4_1:42248566-42248585 None:intergenic 35.0%
GTTATGTAGATCCTCCTAAT+TGG + chr4_1:42248714-42248733 Msa0548320:CDS 35.0%
TTGCTGCAGGTTAAAATAGA+TGG - chr4_1:42248910-42248929 None:intergenic 35.0%
!! CCATTTGCTTGTTGATGATT+TGG - chr4_1:42248933-42248952 None:intergenic 35.0%
CCAAATCATCAACAAGCAAA+TGG + chr4_1:42248930-42248949 Msa0548320:CDS 35.0%
CCAATTAGTTCATGATGAGA+AGG - chr4_1:42249341-42249360 None:intergenic 35.0%
CCTTCTCATCATGAACTAAT+TGG + chr4_1:42249338-42249357 Msa0548320:CDS 35.0%
! GTTGTTGTTGATGTTGTTCT+TGG - chr4_1:42249472-42249491 None:intergenic 35.0%
GATCATATGGGGTTTCAAAT+TGG + chr4_1:42249497-42249516 Msa0548320:CDS 35.0%
ATGGGGTTTCAAATTGGTAT+TGG + chr4_1:42249503-42249522 Msa0548320:CDS 35.0%
! ACTTTTGAATCAAACTCTGC+TGG + chr4_1:42249626-42249645 Msa0548320:CDS 35.0%
GAGATATAGCTTCAAACTCT+AGG + chr4_1:42249711-42249730 Msa0548320:CDS 35.0%
!! TTTTCTTCCATTTTAACCGG+TGG - chr4_1:42249749-42249768 None:intergenic 35.0%
AATCTATCAAGAACATCCCT+TGG + chr4_1:42249779-42249798 Msa0548320:CDS 35.0%
ATTATGTTCAGAGACACCAA+GGG - chr4_1:42249798-42249817 None:intergenic 35.0%
TATTATGTTCAGAGACACCA+AGG - chr4_1:42249799-42249818 None:intergenic 35.0%
TCTTATAAATTTGGCCGGAA+TGG + chr4_1:42249873-42249892 Msa0548320:exon 35.0%
! GATATGAAGTTTGGAACGAT+TGG + chr4_1:42249902-42249921 Msa0548320:three_prime_UTR 35.0%
AGCATTAAAGGAAGAGAGGA+GGG - chr4_1:42248562-42248581 None:intergenic 40.0%
TTCTCTTCTCTGTATTCCCT+TGG + chr4_1:42248596-42248615 Msa0548320:five_prime_UTR 40.0%
! ATGGTGGAGAATCAAACCAA+GGG - chr4_1:42248615-42248634 None:intergenic 40.0%
GCACTTAGAAATGTTCCAGT+TGG + chr4_1:42249212-42249231 Msa0548320:CDS 40.0%
CTTAGAAATGTTCCAGTTGG+TGG + chr4_1:42249215-42249234 Msa0548320:CDS 40.0%
GGTAGGTTAGGAATTGTTTG+TGG - chr4_1:42249374-42249393 None:intergenic 40.0%
AATTCCTAACCTACCCTTCA+TGG + chr4_1:42249379-42249398 Msa0548320:CDS 40.0%
AATCTGAGTCGTTATGTCGT+TGG + chr4_1:42249413-42249432 Msa0548320:CDS 40.0%
TGTCGTTGGAAACGTTAACA+TGG + chr4_1:42249427-42249446 Msa0548320:CDS 40.0%
GTCGTTGGAAACGTTAACAT+GGG + chr4_1:42249428-42249447 Msa0548320:CDS 40.0%
AATTGCTGCAAATTACGCCA+TGG - chr4_1:42249593-42249612 None:intergenic 40.0%
AGCATTAAAGGAAGAGAGGA+GGG - chr4_1:42248562-42248581 None:intergenic 40.0%
TTCTCTTCTCTGTATTCCCT+TGG + chr4_1:42248596-42248615 Msa0548320:five_prime_UTR 40.0%
! ATGGTGGAGAATCAAACCAA+GGG - chr4_1:42248615-42248634 None:intergenic 40.0%
GCACTTAGAAATGTTCCAGT+TGG + chr4_1:42249212-42249231 Msa0548320:CDS 40.0%
CTTAGAAATGTTCCAGTTGG+TGG + chr4_1:42249215-42249234 Msa0548320:CDS 40.0%
GGTAGGTTAGGAATTGTTTG+TGG - chr4_1:42249374-42249393 None:intergenic 40.0%
AATTCCTAACCTACCCTTCA+TGG + chr4_1:42249379-42249398 Msa0548320:CDS 40.0%
AATCTGAGTCGTTATGTCGT+TGG + chr4_1:42249413-42249432 Msa0548320:CDS 40.0%
TGTCGTTGGAAACGTTAACA+TGG + chr4_1:42249427-42249446 Msa0548320:CDS 40.0%
GTCGTTGGAAACGTTAACAT+GGG + chr4_1:42249428-42249447 Msa0548320:CDS 40.0%
AATTGCTGCAAATTACGCCA+TGG - chr4_1:42249593-42249612 None:intergenic 40.0%
AGGAGGAAAGCAGCAATAAG+AGG - chr4_1:42248539-42248558 None:intergenic 45.0%
ATTAAAGGAAGAGAGGAGGG+AGG - chr4_1:42248559-42248578 None:intergenic 45.0%
GAGCATTAAAGGAAGAGAGG+AGG - chr4_1:42248563-42248582 None:intergenic 45.0%
!! GATGGTGGAGAATCAAACCA+AGG - chr4_1:42248616-42248635 None:intergenic 45.0%
! TTGATGGCTCTTTAGGGAGA+TGG - chr4_1:42248634-42248653 None:intergenic 45.0%
! TTTACCTGGTGGTGCCAATT+AGG - chr4_1:42248731-42248750 None:intergenic 45.0%
!! GTTGATGATTTGGTTGCTGC+AGG - chr4_1:42248923-42248942 None:intergenic 45.0%
GTCACTTCTGCAAGACATGT+AGG + chr4_1:42249168-42249187 Msa0548320:CDS 45.0%
GCAAGACATGTAGGCGTTAT+TGG + chr4_1:42249177-42249196 Msa0548320:CDS 45.0%
TGTAGGCGTTATTGGACAAG+AGG + chr4_1:42249185-42249204 Msa0548320:CDS 45.0%
GTAGGCGTTATTGGACAAGA+GGG + chr4_1:42249186-42249205 Msa0548320:CDS 45.0%
TAGGCGTTATTGGACAAGAG+GGG + chr4_1:42249187-42249206 Msa0548320:CDS 45.0%
!! AGAAATGTTCCAGTTGGTGG+AGG + chr4_1:42249218-42249237 Msa0548320:CDS 45.0%
!! GAAATGTTCCAGTTGGTGGA+GGG + chr4_1:42249219-42249238 Msa0548320:CDS 45.0%
AGAAGGGATTGCACTTGATG+GGG - chr4_1:42249324-42249343 None:intergenic 45.0%
GAGAAGGGATTGCACTTGAT+GGG - chr4_1:42249325-42249344 None:intergenic 45.0%
TGAGAAGGGATTGCACTTGA+TGG - chr4_1:42249326-42249345 None:intergenic 45.0%
GGAAACGTTAACATGGGACT+TGG + chr4_1:42249434-42249453 Msa0548320:CDS 45.0%
AACATTGAAGCTGCAGCATC+TGG + chr4_1:42249680-42249699 Msa0548320:CDS 45.0%
! TCAAGAGCCACCGGTTAAAA+TGG + chr4_1:42249739-42249758 Msa0548320:CDS 45.0%
AGGAGGAAAGCAGCAATAAG+AGG - chr4_1:42248539-42248558 None:intergenic 45.0%
ATTAAAGGAAGAGAGGAGGG+AGG - chr4_1:42248559-42248578 None:intergenic 45.0%
GAGCATTAAAGGAAGAGAGG+AGG - chr4_1:42248563-42248582 None:intergenic 45.0%
!! GATGGTGGAGAATCAAACCA+AGG - chr4_1:42248616-42248635 None:intergenic 45.0%
! TTGATGGCTCTTTAGGGAGA+TGG - chr4_1:42248634-42248653 None:intergenic 45.0%
! TTTACCTGGTGGTGCCAATT+AGG - chr4_1:42248731-42248750 None:intergenic 45.0%
!! GTTGATGATTTGGTTGCTGC+AGG - chr4_1:42248923-42248942 None:intergenic 45.0%
GTCACTTCTGCAAGACATGT+AGG + chr4_1:42249168-42249187 Msa0548320:CDS 45.0%
GCAAGACATGTAGGCGTTAT+TGG + chr4_1:42249177-42249196 Msa0548320:CDS 45.0%
TGTAGGCGTTATTGGACAAG+AGG + chr4_1:42249185-42249204 Msa0548320:CDS 45.0%
GTAGGCGTTATTGGACAAGA+GGG + chr4_1:42249186-42249205 Msa0548320:CDS 45.0%
TAGGCGTTATTGGACAAGAG+GGG + chr4_1:42249187-42249206 Msa0548320:CDS 45.0%
!! AGAAATGTTCCAGTTGGTGG+AGG + chr4_1:42249218-42249237 Msa0548320:CDS 45.0%
!! GAAATGTTCCAGTTGGTGGA+GGG + chr4_1:42249219-42249238 Msa0548320:CDS 45.0%
AGAAGGGATTGCACTTGATG+GGG - chr4_1:42249324-42249343 None:intergenic 45.0%
GAGAAGGGATTGCACTTGAT+GGG - chr4_1:42249325-42249344 None:intergenic 45.0%
TGAGAAGGGATTGCACTTGA+TGG - chr4_1:42249326-42249345 None:intergenic 45.0%
GGAAACGTTAACATGGGACT+TGG + chr4_1:42249434-42249453 Msa0548320:CDS 45.0%
AACATTGAAGCTGCAGCATC+TGG + chr4_1:42249680-42249699 Msa0548320:CDS 45.0%
! TCAAGAGCCACCGGTTAAAA+TGG + chr4_1:42249739-42249758 Msa0548320:CDS 45.0%
!!! TTTGTTTTATTATATTTTTA+GGG - chr4_1:42248469-42248488 None:intergenic 5.0%
!!! TTTTGTTTTATTATATTTTT+AGG - chr4_1:42248470-42248489 None:intergenic 5.0%
!!! TTTGTTTTATTATATTTTTA+GGG - chr4_1:42248469-42248488 None:intergenic 5.0%
!!! TTTTGTTTTATTATATTTTT+AGG - chr4_1:42248470-42248489 None:intergenic 5.0%
! ATGGCTCTTTAGGGAGATGG+TGG - chr4_1:42248631-42248650 None:intergenic 50.0%
TCCACCTTTACCACCTCAAG+TGG + chr4_1:42248974-42248993 Msa0548320:CDS 50.0%
CCACCTTTACCACCTCAAGT+GGG + chr4_1:42248975-42248994 Msa0548320:CDS 50.0%
TAAACGAGCTCGATCAGCCA+TGG - chr4_1:42249048-42249067 None:intergenic 50.0%
!! GTGTTGGTTGAATCGCAACG+AGG - chr4_1:42249107-42249126 None:intergenic 50.0%
AGAAGTGACGAGGTTGAGTG+AGG - chr4_1:42249157-42249176 None:intergenic 50.0%
CATGTCTTGCAGAAGTGACG+AGG - chr4_1:42249167-42249186 None:intergenic 50.0%
AGGCGTTATTGGACAAGAGG+GGG + chr4_1:42249188-42249207 Msa0548320:CDS 50.0%
TTCTGCATCGAGGCCATGAA+GGG - chr4_1:42249395-42249414 None:intergenic 50.0%
ATTCTGCATCGAGGCCATGA+AGG - chr4_1:42249396-42249415 None:intergenic 50.0%
ACGACTCAGATTCTGCATCG+AGG - chr4_1:42249405-42249424 None:intergenic 50.0%
GTTTCTGCTTCTGCTGTTGC+TGG + chr4_1:42249551-42249570 Msa0548320:CDS 50.0%
!! GAGGTGTTGGAGTTGAACCA+TGG + chr4_1:42249573-42249592 Msa0548320:CDS 50.0%
GCTGCAGCATCTGGATTTGT+TGG + chr4_1:42249689-42249708 Msa0548320:CDS 50.0%
TAGGGCTAATCAAGAGCCAC+CGG + chr4_1:42249730-42249749 Msa0548320:CDS 50.0%
! ATGGCTCTTTAGGGAGATGG+TGG - chr4_1:42248631-42248650 None:intergenic 50.0%
TCCACCTTTACCACCTCAAG+TGG + chr4_1:42248974-42248993 Msa0548320:CDS 50.0%
CCACCTTTACCACCTCAAGT+GGG + chr4_1:42248975-42248994 Msa0548320:CDS 50.0%
TAAACGAGCTCGATCAGCCA+TGG - chr4_1:42249048-42249067 None:intergenic 50.0%
!! GTGTTGGTTGAATCGCAACG+AGG - chr4_1:42249107-42249126 None:intergenic 50.0%
AGAAGTGACGAGGTTGAGTG+AGG - chr4_1:42249157-42249176 None:intergenic 50.0%
CATGTCTTGCAGAAGTGACG+AGG - chr4_1:42249167-42249186 None:intergenic 50.0%
AGGCGTTATTGGACAAGAGG+GGG + chr4_1:42249188-42249207 Msa0548320:CDS 50.0%
TTCTGCATCGAGGCCATGAA+GGG - chr4_1:42249395-42249414 None:intergenic 50.0%
ATTCTGCATCGAGGCCATGA+AGG - chr4_1:42249396-42249415 None:intergenic 50.0%
ACGACTCAGATTCTGCATCG+AGG - chr4_1:42249405-42249424 None:intergenic 50.0%
GTTTCTGCTTCTGCTGTTGC+TGG + chr4_1:42249551-42249570 Msa0548320:CDS 50.0%
!! GAGGTGTTGGAGTTGAACCA+TGG + chr4_1:42249573-42249592 Msa0548320:CDS 50.0%
GCTGCAGCATCTGGATTTGT+TGG + chr4_1:42249689-42249708 Msa0548320:CDS 50.0%
TAGGGCTAATCAAGAGCCAC+CGG + chr4_1:42249730-42249749 Msa0548320:CDS 50.0%
AAAGGAAGAGAGGAGGGAGG+AGG - chr4_1:42248556-42248575 None:intergenic 55.0%
TCCTCCTAATTGGCACCACC+AGG + chr4_1:42248724-42248743 Msa0548320:CDS 55.0%
! ACCTGGTGGTGCCAATTAGG+AGG - chr4_1:42248728-42248747 None:intergenic 55.0%
CCCACTTGAGGTGGTAAAGG+TGG - chr4_1:42248978-42248997 None:intergenic 55.0%
CCTCCCACTTGAGGTGGTAA+AGG - chr4_1:42248981-42249000 None:intergenic 55.0%
CCTTTACCACCTCAAGTGGG+AGG + chr4_1:42248978-42248997 Msa0548320:CDS 55.0%
GTACTACCTCCCACTTGAGG+TGG - chr4_1:42248987-42249006 None:intergenic 55.0%
CCAGTACTACCTCCCACTTG+AGG - chr4_1:42248990-42249009 None:intergenic 55.0%
CCTCAAGTGGGAGGTAGTAC+TGG + chr4_1:42248987-42249006 Msa0548320:CDS 55.0%
! CAAGTGGGAGGTAGTACTGG+TGG + chr4_1:42248990-42249009 Msa0548320:CDS 55.0%
!! TACTGGTGGCGGTGGTACTA+TGG + chr4_1:42249004-42249023 Msa0548320:CDS 55.0%
!! ACTGGTGGCGGTGGTACTAT+GGG + chr4_1:42249005-42249024 Msa0548320:CDS 55.0%
ACTATGGGCTCGATCAGACC+AGG + chr4_1:42249020-42249039 Msa0548320:CDS 55.0%
!! TTTAGCGCTGGTTCTGGTGG+TGG - chr4_1:42249080-42249099 None:intergenic 55.0%
!! CACTTTAGCGCTGGTTCTGG+TGG - chr4_1:42249083-42249102 None:intergenic 55.0%
!! GGACACTTTAGCGCTGGTTC+TGG - chr4_1:42249086-42249105 None:intergenic 55.0%
CAACGAGGACACTTTAGCGC+TGG - chr4_1:42249092-42249111 None:intergenic 55.0%
GAGGCCATGAAGGGTAGGTT+AGG - chr4_1:42249386-42249405 None:intergenic 55.0%
TCTGCTTCTGCTGTTGCTGG+AGG + chr4_1:42249554-42249573 Msa0548320:CDS 55.0%
! TCTGCTGTTGCTGGAGGTGT+TGG + chr4_1:42249560-42249579 Msa0548320:CDS 55.0%
AAAGGAAGAGAGGAGGGAGG+AGG - chr4_1:42248556-42248575 None:intergenic 55.0%
TCCTCCTAATTGGCACCACC+AGG + chr4_1:42248724-42248743 Msa0548320:CDS 55.0%
! ACCTGGTGGTGCCAATTAGG+AGG - chr4_1:42248728-42248747 None:intergenic 55.0%
CCCACTTGAGGTGGTAAAGG+TGG - chr4_1:42248978-42248997 None:intergenic 55.0%
CCTCCCACTTGAGGTGGTAA+AGG - chr4_1:42248981-42249000 None:intergenic 55.0%
CCTTTACCACCTCAAGTGGG+AGG + chr4_1:42248978-42248997 Msa0548320:CDS 55.0%
GTACTACCTCCCACTTGAGG+TGG - chr4_1:42248987-42249006 None:intergenic 55.0%
CCAGTACTACCTCCCACTTG+AGG - chr4_1:42248990-42249009 None:intergenic 55.0%
CCTCAAGTGGGAGGTAGTAC+TGG + chr4_1:42248987-42249006 Msa0548320:CDS 55.0%
! CAAGTGGGAGGTAGTACTGG+TGG + chr4_1:42248990-42249009 Msa0548320:CDS 55.0%
!! TACTGGTGGCGGTGGTACTA+TGG + chr4_1:42249004-42249023 Msa0548320:CDS 55.0%
!! ACTGGTGGCGGTGGTACTAT+GGG + chr4_1:42249005-42249024 Msa0548320:CDS 55.0%
ACTATGGGCTCGATCAGACC+AGG + chr4_1:42249020-42249039 Msa0548320:CDS 55.0%
!! TTTAGCGCTGGTTCTGGTGG+TGG - chr4_1:42249080-42249099 None:intergenic 55.0%
!! CACTTTAGCGCTGGTTCTGG+TGG - chr4_1:42249083-42249102 None:intergenic 55.0%
!! GGACACTTTAGCGCTGGTTC+TGG - chr4_1:42249086-42249105 None:intergenic 55.0%
CAACGAGGACACTTTAGCGC+TGG - chr4_1:42249092-42249111 None:intergenic 55.0%
GAGGCCATGAAGGGTAGGTT+AGG - chr4_1:42249386-42249405 None:intergenic 55.0%
TCTGCTTCTGCTGTTGCTGG+AGG + chr4_1:42249554-42249573 Msa0548320:CDS 55.0%
! TCTGCTGTTGCTGGAGGTGT+TGG + chr4_1:42249560-42249579 Msa0548320:CDS 55.0%
!! GTGGGAGGTAGTACTGGTGG+CGG + chr4_1:42248993-42249012 Msa0548320:CDS 60.0%
CTCGATCAGACCAGGCTCCA+TGG + chr4_1:42249028-42249047 Msa0548320:CDS 60.0%
CTACGACACCCTCCACCAAC+TGG - chr4_1:42249230-42249249 None:intergenic 60.0%
GCATCGAGGCCATGAAGGGT+AGG - chr4_1:42249391-42249410 None:intergenic 60.0%
!! GTGGGAGGTAGTACTGGTGG+CGG + chr4_1:42248993-42249012 Msa0548320:CDS 60.0%
CTCGATCAGACCAGGCTCCA+TGG + chr4_1:42249028-42249047 Msa0548320:CDS 60.0%
CTACGACACCCTCCACCAAC+TGG - chr4_1:42249230-42249249 None:intergenic 60.0%
GCATCGAGGCCATGAAGGGT+AGG - chr4_1:42249391-42249410 None:intergenic 60.0%
!! GGAGGTAGTACTGGTGGCGG+TGG + chr4_1:42248996-42249015 Msa0548320:CDS 65.0%
GCTCGATCAGCCATGGAGCC+TGG - chr4_1:42249041-42249060 None:intergenic 65.0%
!! GGAGGTAGTACTGGTGGCGG+TGG + chr4_1:42248996-42249015 Msa0548320:CDS 65.0%
GCTCGATCAGCCATGGAGCC+TGG - chr4_1:42249041-42249060 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42248401 42250175 42248401 ID=Msa0548320;Name=Msa0548320
chr4_1 mRNA 42248401 42250175 42248401 ID=Msa0548320-mRNA-1;Parent=Msa0548320;Name=Msa0548320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=291|1|1|1|1|1|2|295|335
chr4_1 exon 42248401 42248745 42248401 ID=Msa0548320-mRNA-1:exon:10892;Parent=Msa0548320-mRNA-1
chr4_1 exon 42248927 42250175 42248927 ID=Msa0548320-mRNA-1:exon:10893;Parent=Msa0548320-mRNA-1
chr4_1 five_prime_UTR 42248401 42248691 42248401 ID=Msa0548320-mRNA-1:five_prime_utr;Parent=Msa0548320-mRNA-1
chr4_1 CDS 42248692 42248745 42248692 ID=Msa0548320-mRNA-1:cds;Parent=Msa0548320-mRNA-1
chr4_1 CDS 42248927 42249880 42248927 ID=Msa0548320-mRNA-1:cds;Parent=Msa0548320-mRNA-1
chr4_1 three_prime_UTR 42249881 42250175 42249881 ID=Msa0548320-mRNA-1:three_prime_utr;Parent=Msa0548320-mRNA-1
Gene Sequence

>Msa0548320

ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCTCCTAATTGGCACCACCAGCAACCAAATCATCAACAAGCAAATGGAAGCAATAACACTCAACTTCTTCCACCTTTACCACCTCAAGTGGGAGGTAGTACTGGTGGCGGTGGTACTATGGGCTCGATCAGACCAGGCTCCATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCAGAACCAGCGCTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCAGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAAAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAACTCTCAAGAAAAACAAACTTCCCCATCAAGTGCAATCCCTTCTCATCATGAACTAATTGGTCATCAGTTACCACAAACAATTCCTAACCTACCCTTCATGGCCTCGATGCAGAATCTGAGTCGTTATGTCGTTGGAAACGTTAACATGGGACTTGGTTTGCGTGAGATCCAAGAACAACATCAACAACAACAACAAGATCATATGGGGTTTCAAATTGGTATTGGTAATGGTAACTCAACTTCTGTTTCTGTTTCTGCTTCTGCTGTTGCTGGAGGTGTTGGAGTTGAACCATGGCGTAATTTGCAGCAATTTCCTTTCTTGAATACTTTTGAATCAAACTCTGCTGGAAATAATTCATACACTTTTCATGGAGAAAGTAACATTGAAGCTGCAGCATCTGGATTTGTTGGAGATATAGCTTCAAACTCTAGGGCTAATCAAGAGCCACCGGTTAAAATGGAAGAAAATCGAGCTTTAAATCTATCAAGAACATCCCTTGGTGTCTCTGAACATAATAACCAACAACAATACTATTCTTGGAATGATTTATCAGGCTCTTCAACTACTCATCTCTTATAA
Protein sequence

>Msa0548320

MVFSSIQGYVDPPNWHHQQPNHQQANGSNNTQLLPPLPPQVGGSTGGGGTMGSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSQEKQTSPSSAIPSHHELIGHQLPQTIPNLPFMASMQNLSRYVVGNVNMGLGLREIQEQHQQQQQDHMGFQIGIGNGNSTSVSVSASAVAGGVGVEPWRNLQQFPFLNTFESNSAGNNSYTFHGESNIEAAASGFVGDIASNSRANQEPPVKMEENRALNLSRTSLGVSEHNNQQQYYSWNDLSGSSTTHLL*