Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361110 | XP_003593168.1 | 85.714 | 119 | 7 | 3 | 1 | 112 | 32 | 147 | 1.62e-58 | 195 |
| Msa1361110 | XP_003593168.1 | 89.881 | 168 | 16 | 1 | 117 | 283 | 6 | 173 | 6.10e-97 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361110 | sp|Q9SDN0|DNJ20_ARATH | 29.050 | 179 | 88 | 7 | 128 | 271 | 16 | 190 | 3.56e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361110 | G7INT0 | 85.714 | 119 | 7 | 3 | 1 | 112 | 32 | 147 | 7.72e-59 | 195 |
| Msa1361110 | G7INT0 | 89.881 | 168 | 16 | 1 | 117 | 283 | 6 | 173 | 2.91e-97 | 292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1361110 | 0.815163 | 1.063957e-51 | -8.615850e-47 |
| Msa0814160 | Msa1361110 | 0.800874 | 1.174501e-48 | -8.615850e-47 |
| Msa0150910 | Msa1361110 | 0.801262 | 9.784936e-49 | -8.615850e-47 |
| Msa0190670 | Msa1361110 | 0.800157 | 1.644040e-48 | -8.615850e-47 |
| Msa1030320 | Msa1361110 | 0.816655 | 4.944415e-52 | -8.615850e-47 |
| Msa0271660 | Msa1361110 | 0.839603 | 1.435428e-57 | -8.615850e-47 |
| Msa1156240 | Msa1361110 | 0.809936 | 1.478720e-50 | -8.615850e-47 |
| Msa1157210 | Msa1361110 | 0.809325 | 2.000899e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361110 | MtrunA17_Chr2g0278961 | 89.881 | 168 | 16 | 1 | 117 | 283 | 6 | 173 | 5.61e-101 | 292 |
| Msa1361110 | MtrunA17_Chr2g0278961 | 85.714 | 119 | 7 | 3 | 1 | 112 | 32 | 147 | 1.49e-62 | 195 |
| Msa1361110 | MtrunA17_Chr2g0278951 | 88.535 | 157 | 16 | 2 | 121 | 275 | 10 | 166 | 3.33e-97 | 283 |
| Msa1361110 | MtrunA17_Chr2g0278951 | 83.846 | 130 | 10 | 4 | 1 | 122 | 32 | 158 | 1.29e-66 | 205 |
| Msa1361110 | MtrunA17_Chr4g0050581 | 51.445 | 173 | 63 | 4 | 123 | 279 | 10 | 177 | 5.91e-47 | 155 |
| Msa1361110 | MtrunA17_Chr4g0050581 | 52.448 | 143 | 36 | 5 | 5 | 124 | 35 | 168 | 1.90e-36 | 128 |
| Msa1361110 | MtrunA17_Chr8g0378161 | 30.864 | 162 | 78 | 7 | 142 | 275 | 36 | 191 | 1.04e-14 | 70.9 |
| Msa1361110 | MtrunA17_Chr8g0378161 | 31.200 | 125 | 55 | 4 | 27 | 121 | 60 | 183 | 2.74e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361110 | AT4G13830.2 | 29.050 | 179 | 88 | 7 | 128 | 271 | 16 | 190 | 3.62e-14 | 70.1 |
| Msa1361110 | AT4G13830.3 | 29.268 | 164 | 92 | 7 | 128 | 270 | 16 | 176 | 9.19e-12 | 63.2 |
| Msa1361110 | AT4G13830.1 | 32.800 | 125 | 68 | 5 | 128 | 239 | 16 | 137 | 4.95e-11 | 60.5 |
Find 50 sgRNAs with CRISPR-Local
Find 634 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTATCATGATCATCTT+TGG | 0.289373 | tig0017348:+4248 | Msa1361110:intergenic |
| ATATGACTTTGAGTTGAGTT+TGG | 0.317132 | tig0017348:-14239 | Msa1361110:CDS |
| ATATGACTTTGAGTTGAGTT+TGG | 0.317132 | tig0017348:-4388 | Msa1361110:CDS |
| ATGGTTTGGAAATGCTAATT+AGG | 0.327620 | tig0017348:+14575 | Msa1361110:intergenic |
| ATGGTTTGGAAATGCTAATT+AGG | 0.327620 | tig0017348:+4715 | Msa1361110:intergenic |
| TCATTCAACTCGTGATGAAT+TGG | 0.334317 | tig0017348:+14469 | Msa1361110:intergenic |
| TCATATTCTTCTTTAAGCTT+TGG | 0.352441 | tig0017348:+14256 | Msa1361110:intergenic |
| TCATATTCTTCTTTAAGCTT+TGG | 0.352441 | tig0017348:+4405 | Msa1361110:intergenic |
| TATGACTTTGAGTTGAGTTT+GGG | 0.385866 | tig0017348:-14238 | Msa1361110:CDS |
| TATGACTTTGAGTTGAGTTT+GGG | 0.385866 | tig0017348:-4387 | Msa1361110:CDS |
| GGAAGGATATGATGTTGATA+TGG | 0.412086 | tig0017348:+14556 | Msa1361110:intergenic |
| GGAAGGATATGATGTTGATA+TGG | 0.412086 | tig0017348:+4696 | Msa1361110:intergenic |
| TGGGTTTGAGAAGAAGTAGA+TGG | 0.412239 | tig0017348:-14219 | Msa1361110:CDS |
| TGGGTTTGAGAAGAAGTAGA+TGG | 0.412239 | tig0017348:-4368 | Msa1361110:CDS |
| GATATGATGTTGATATGGTT+TGG | 0.425775 | tig0017348:+14561 | Msa1361110:intergenic |
| GATATGATGTTGATATGGTT+TGG | 0.425775 | tig0017348:+4701 | Msa1361110:intergenic |
| AAATGGTTGAATTGAATAGA+AGG | 0.441993 | tig0017348:-14189 | Msa1361110:CDS |
| AAATGGTTGAATTGAATAGA+AGG | 0.441993 | tig0017348:-4338 | Msa1361110:CDS |
| AGGTCTCATGCACGTGAGGC+TGG | 0.455625 | tig0017348:-4318 | Msa1361110:CDS |
| AAACGATCATGACACAAATC+AGG | 0.478058 | tig0017348:+4492 | Msa1361110:intergenic |
| AGGTCTCATACACGTGAGGC+TGG | 0.489090 | tig0017348:-14169 | Msa1361110:CDS |
| AGGCTGGATCATCATCATCA+TGG | 0.491279 | tig0017348:-14153 | Msa1361110:CDS |
| AGGCTGGATCATCATCATCA+TGG | 0.491279 | tig0017348:-4302 | Msa1361110:CDS |
| AAGTAGATGGATGGAACAAA+TGG | 0.493801 | tig0017348:-14206 | Msa1361110:CDS |
| AAGTAGATGGATGGAACAAA+TGG | 0.493801 | tig0017348:-4355 | Msa1361110:CDS |
| TGTTTCAATTCATAATAAGC+TGG | 0.501633 | tig0017348:-4616 | Msa1361110:CDS |
| TCATGATCGTTTGAAGAAAG+AGG | 0.509035 | tig0017348:-4481 | Msa1361110:CDS |
| GGCTGGATCATCATCATCAT+GGG | 0.526562 | tig0017348:-14152 | Msa1361110:CDS |
| GGCTGGATCATCATCATCAT+GGG | 0.526562 | tig0017348:-4301 | Msa1361110:CDS |
| CATCATGGGGTAGTAGAATG+AGG | 0.533214 | tig0017348:-4287 | Msa1361110:CDS |
| TTTGAGAAGAAGTAGATGGA+TGG | 0.542145 | tig0017348:-14215 | Msa1361110:CDS |
| TTTGAGAAGAAGTAGATGGA+TGG | 0.542145 | tig0017348:-4364 | Msa1361110:CDS |
| GTTGTCTATTTGAGAGTGGA+AGG | 0.546135 | tig0017348:+14539 | Msa1361110:intergenic |
| GTTGTCTATTTGAGAGTGGA+AGG | 0.546135 | tig0017348:+4679 | Msa1361110:intergenic |
| CGAGGTTGTCTATTTGAGAG+TGG | 0.581589 | tig0017348:+14535 | Msa1361110:intergenic |
| CGAGGTTGTCTATTTGAGAG+TGG | 0.581589 | tig0017348:+4675 | Msa1361110:intergenic |
| GAGTCCTAAAAGTGCAACAA+TGG | 0.586601 | tig0017348:-14410 | Msa1361110:CDS |
| GAGTCCTAAAAGTGCAACAA+TGG | 0.586601 | tig0017348:-4559 | Msa1361110:CDS |
| ATCATGGGGTAGTAGAATGA+GGG | 0.611732 | tig0017348:-4286 | Msa1361110:CDS |
| TAGAAGGTCTCATGCACGTG+AGG | 0.626502 | tig0017348:-4322 | Msa1361110:CDS |
| AAAGAGAGCATATAGAACAA+TGG | 0.635339 | tig0017348:-14380 | Msa1361110:CDS |
| AAAGAGAGCATATAGAACAA+TGG | 0.635339 | tig0017348:-4529 | Msa1361110:CDS |
| GAAACGCAAAACTGCATACG+AGG | 0.637699 | tig0017348:+14517 | Msa1361110:intergenic |
| GAAACACAAAACTGCATACG+AGG | 0.650238 | tig0017348:+4657 | Msa1361110:intergenic |
| GAGTTGAATGATGATGATGA+TGG | 0.671826 | tig0017348:-14457 | Msa1361110:CDS |
| TAGAAGGTCTCATACACGTG+AGG | 0.691286 | tig0017348:-14173 | Msa1361110:CDS |
| GCTGGATCATCATCATCATG+GGG | 0.713529 | tig0017348:-14151 | Msa1361110:intron |
| GCTGGATCATCATCATCATG+GGG | 0.713529 | tig0017348:-4300 | Msa1361110:CDS |
| TGAAGAAAGAGGAATCAACG+AGG | 0.790002 | tig0017348:-14321 | Msa1361110:intron |
| TGAAGAAAGAGGAATCAACG+AGG | 0.790002 | tig0017348:-4470 | Msa1361110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAGAATTTTTAAGT+TGG | + | tig0017348:7294-7313 | Msa1361110:intergenic | 10.0% |
| !!! | AACTTAAAAATTCTTATTTT+TGG | - | tig0017348:7293-7312 | Msa1361110:intron | 10.0% |
| !! | ATATAAAAAATTAAAATGCA+CGG | - | tig0017348:7853-7872 | Msa1361110:intron | 10.0% |
| !! | TTAAATCAAATAAAAACATT+TGG | + | tig0017348:7919-7938 | Msa1361110:intergenic | 10.0% |
| !!! | TTTTTATTTGATTTAACAAT+AGG | - | tig0017348:7923-7942 | Msa1361110:intron | 10.0% |
| !!! | TTTTATTTGATTTAACAATA+GGG | - | tig0017348:7924-7943 | Msa1361110:intron | 10.0% |
| !! | GGAATAAAATATAAATAAAT+AGG | + | tig0017348:9722-9741 | Msa1361110:intergenic | 10.0% |
| !!! | AATTTTTGTAAATTAATTTG+AGG | + | tig0017348:9800-9819 | Msa1361110:intergenic | 10.0% |
| !! | TATAAACACATAATAATTAT+AGG | + | tig0017348:10025-10044 | Msa1361110:intergenic | 10.0% |
| !! | AATAAAATAATAAATGGTTA+AGG | - | tig0017348:11348-11367 | Msa1361110:intron | 10.0% |
| !! | ATAAAATAATAAATGGTTAA+GGG | - | tig0017348:11349-11368 | Msa1361110:intron | 10.0% |
| !! | AAAAAAAAAAAAAAACAAAG+GGG | - | tig0017348:12018-12037 | Msa1361110:intron | 10.0% |
| !!! | TATATATATGAGTAATTTTA+TGG | + | tig0017348:13366-13385 | Msa1361110:intergenic | 10.0% |
| !! | AAAATTATTAAGTATTCTTA+TGG | - | tig0017348:13939-13958 | Msa1361110:intron | 10.0% |
| !!! | AATTGGATTTTTTTTTTTTG+TGG | + | tig0017348:4341-4360 | Msa1149520:intergenic | 15.0% |
| !!! | CTATTATTTTTTGTGTAAAT+TGG | - | tig0017348:4940-4959 | Msa1361110:intron | 15.0% |
| !!! | TAAGTTAAACTTATCATTTT+CGG | + | tig0017348:5203-5222 | Msa1361110:intergenic | 15.0% |
| !! | AATATTTAATACACATTCAA+GGG | + | tig0017348:7039-7058 | Msa1361110:intergenic | 15.0% |
| !! | AAATATTTAATACACATTCA+AGG | + | tig0017348:7040-7059 | Msa1361110:intergenic | 15.0% |
| !! | AAAAAAAAAACCATATATAC+TGG | + | tig0017348:7780-7799 | Msa1361110:intergenic | 15.0% |
| !!! | AAGGAAATTTTAAGTTAAAA+AGG | - | tig0017348:7992-8011 | Msa1361110:intron | 15.0% |
| !!! | AAAGTAAAATAGATAGATTT+TGG | - | tig0017348:8437-8456 | Msa1361110:intron | 15.0% |
| !!! | TTTTAATTTTGCTTTATTCA+CGG | + | tig0017348:9233-9252 | Msa1361110:intergenic | 15.0% |
| !!! | TATTTATATTTTATTCCAAG+AGG | - | tig0017348:9725-9744 | Msa1361110:intron | 15.0% |
| !!! | ATTTATATTTTATTCCAAGA+GGG | - | tig0017348:9726-9745 | Msa1361110:intron | 15.0% |
| !!! | ATTTAAGACAAAAGATATAA+CGG | + | tig0017348:9767-9786 | Msa1361110:intergenic | 15.0% |
| !!! | CCTTTTCTTAATTTTATTTT+TGG | + | tig0017348:10498-10517 | Msa1361110:intergenic | 15.0% |
| !! | CCAAAAATAAAATTAAGAAA+AGG | - | tig0017348:10495-10514 | Msa1361110:intron | 15.0% |
| !! | ATTTAATTATGAAAAGAAGA+AGG | - | tig0017348:10786-10805 | Msa1361110:intron | 15.0% |
| !! | TTTAATTATGAAAAGAAGAA+GGG | - | tig0017348:10787-10806 | Msa1361110:intron | 15.0% |
| !! | TAGACGTTTAAAAATTAATA+TGG | + | tig0017348:11073-11092 | Msa1361110:intergenic | 15.0% |
| !!! | ACACTTTTGTTTTTTTTTTT+TGG | + | tig0017348:11130-11149 | Msa1361110:intergenic | 15.0% |
| !! | TCTTTACAATAAATAGATAA+AGG | + | tig0017348:11316-11335 | Msa1361110:intergenic | 15.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | + | tig0017348:11626-11645 | Msa1361110:intergenic | 15.0% |
| !!! | ATGTTAATCTTCATATTTTT+TGG | + | tig0017348:12067-12086 | Msa1361110:intergenic | 15.0% |
| !! | ATACTTAATGTAAATGTATT+TGG | - | tig0017348:12196-12215 | Msa1361110:intron | 15.0% |
| !!! | GAAAAGTTGATATTTTTATA+GGG | + | tig0017348:12360-12379 | Msa1361110:intergenic | 15.0% |
| !! | ACTAAAATTAACTTCAAAAT+AGG | - | tig0017348:12703-12722 | Msa1361110:intron | 15.0% |
| !! | CTAAAATTAACTTCAAAATA+GGG | - | tig0017348:12704-12723 | Msa1361110:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+AGG | - | tig0017348:12735-12754 | Msa1361110:intron | 15.0% |
| !!! | ATATTAGAATTTAAGTTGTA+GGG | + | tig0017348:12836-12855 | Msa1361110:intergenic | 15.0% |
| !!! | AATATTAGAATTTAAGTTGT+AGG | + | tig0017348:12837-12856 | Msa1361110:intergenic | 15.0% |
| !! | ATTAATTATAACATGAACTT+CGG | + | tig0017348:13601-13620 | Msa1361110:intergenic | 15.0% |
| !! | TTAATTCATAAATAGTCTTT+CGG | - | tig0017348:13911-13930 | Msa1361110:intron | 15.0% |
| !! | ATAAATGAAAGAATGTTCTT+TGG | + | tig0017348:4840-4859 | Msa1361110:intergenic | 20.0% |
| !!! | TTTGTGTAAATTGGTATTTT+CGG | - | tig0017348:4949-4968 | Msa1361110:intron | 20.0% |
| !! | GAAATTGGAATCATAATTTA+TGG | - | tig0017348:5008-5027 | Msa1361110:intron | 20.0% |
| !! | GAGAATATATTAAACCTTAA+CGG | - | tig0017348:5100-5119 | Msa1361110:intron | 20.0% |
| !! | AAAAACCAAGAAAATTCATT+GGG | + | tig0017348:5481-5500 | Msa1361110:intergenic | 20.0% |
| !! | AAAAAACCAAGAAAATTCAT+TGG | + | tig0017348:5482-5501 | Msa1361110:intergenic | 20.0% |
| !! | TTAACATGAAGAAAATTGAT+TGG | + | tig0017348:5567-5586 | Msa1361110:intergenic | 20.0% |
| !!! | ATCAATTTTCTCAATCAATT+AGG | + | tig0017348:5605-5624 | Msa1361110:intergenic | 20.0% |
| !!! | ATATATCCTTTAATTTCATC+CGG | + | tig0017348:5658-5677 | Msa1361110:intergenic | 20.0% |
| !! | AAAGTTGTGTATAGAAAAAT+TGG | - | tig0017348:5707-5726 | Msa1361110:intron | 20.0% |
| !! | GATATGATAAGATTAGAAAA+TGG | + | tig0017348:6024-6043 | Msa1361110:intergenic | 20.0% |
| !!! | CAGATACATATAGATTTTTA+GGG | + | tig0017348:6074-6093 | Msa1361110:intergenic | 20.0% |
| !! | TATGTTTGTAATTGTCTTTA+AGG | - | tig0017348:6243-6262 | Msa1361110:intron | 20.0% |
| !! | TAAGAAACATTTAATTGGAT+GGG | - | tig0017348:6828-6847 | Msa1361110:intron | 20.0% |
| !! | ATATTTAATACACATTCAAG+GGG | + | tig0017348:7038-7057 | Msa1361110:intergenic | 20.0% |
| !!! | TTTTTTTTAGTCTATTAGCT+AGG | - | tig0017348:7793-7812 | Msa1361110:intron | 20.0% |
| !! | AAATAAAAACATTTGGATGA+TGG | + | tig0017348:7912-7931 | Msa1361110:intergenic | 20.0% |
| !! | TAGAGGATATATATTGTTAA+GGG | + | tig0017348:8130-8149 | Msa1361110:intergenic | 20.0% |
| !! | TTAACAATATATATCCTCTA+GGG | - | tig0017348:8130-8149 | Msa1361110:intron | 20.0% |
| !! | AAAATCCTAAATGAAGTAAA+TGG | + | tig0017348:8556-8575 | Msa1361110:intergenic | 20.0% |
| !!! | ATTTACTTCATTTAGGATTT+TGG | - | tig0017348:8555-8574 | Msa1361110:intron | 20.0% |
| !! | ATAGAATTTCATCAATTTCA+AGG | - | tig0017348:9514-9533 | Msa1361110:intron | 20.0% |
| !! | TATATAATATATGCAAAGTC+TGG | - | tig0017348:10093-10112 | Msa1361110:intron | 20.0% |
| !!! | ATTAAGCCTTTATTTTTTAG+TGG | + | tig0017348:10135-10154 | Msa1361110:intergenic | 20.0% |
| !! | AAAATCACTCAAAAAAAAAG+GGG | + | tig0017348:10200-10219 | Msa1361110:intergenic | 20.0% |
| !! | CAAAATCACTCAAAAAAAAA+GGG | + | tig0017348:10201-10220 | Msa1361110:intergenic | 20.0% |
| !! | TCAAAATCATCATTAAAAGA+GGG | + | tig0017348:10373-10392 | Msa1361110:intergenic | 20.0% |
| !! | TTCAAAATCATCATTAAAAG+AGG | + | tig0017348:10374-10393 | Msa1361110:intergenic | 20.0% |
| !! | TTAATCCTAAAGATAGAATA+AGG | - | tig0017348:10619-10638 | Msa1361110:intron | 20.0% |
| !! | CTATATAAATGTAAAACTGA+TGG | - | tig0017348:10888-10907 | Msa1361110:intron | 20.0% |
| !! | AAGAGAGTTAAATATGATTA+TGG | - | tig0017348:11039-11058 | Msa1361110:intron | 20.0% |
| !! | AGAGAGTTAAATATGATTAT+GGG | - | tig0017348:11040-11059 | Msa1361110:intron | 20.0% |
| !! | CGTTTAAAAATTAATATGGA+CGG | + | tig0017348:11069-11088 | Msa1361110:intergenic | 20.0% |
| !!! | CAAAACACAATTTTGTTTTA+AGG | + | tig0017348:11104-11123 | Msa1361110:intergenic | 20.0% |
| !! | ATCAAAAATGATGTTTGATA+TGG | - | tig0017348:11181-11200 | Msa1361110:intron | 20.0% |
| !! | TTCAATGCAACATTAATTAT+TGG | - | tig0017348:11277-11296 | Msa1361110:intron | 20.0% |
| !! | TTGATGAATAATGTTTGATA+TGG | - | tig0017348:11514-11533 | Msa1361110:intron | 20.0% |
| !!! | TTCATATTTTTTGGTCAATT+GGG | + | tig0017348:12058-12077 | Msa1361110:intergenic | 20.0% |
| !! | ATTTCAATGCTACATATTAA+GGG | - | tig0017348:12085-12104 | Msa1361110:intron | 20.0% |
| !! | TATTCAATAAACCTAAAAAG+TGG | - | tig0017348:12239-12258 | Msa1361110:intron | 20.0% |
| !! | ATATTAGAATTATACTACTC+CGG | + | tig0017348:12285-12304 | Msa1361110:intergenic | 20.0% |
| !!! | CTTAAGGTTAAATATGTTTT+TGG | - | tig0017348:12333-12352 | Msa1361110:intron | 20.0% |
| !!! | CGAAAAGTTGATATTTTTAT+AGG | + | tig0017348:12361-12380 | Msa1361110:intergenic | 20.0% |
| !!! | GAAAAGTTGATATATTTGTA+GGG | - | tig0017348:12795-12814 | Msa1361110:intron | 20.0% |
| !! | ATATGAGTCATTTATCATTT+AGG | - | tig0017348:12901-12920 | Msa1361110:intron | 20.0% |
| !!! | TTTGAAATTTCGATATATTG+AGG | + | tig0017348:13265-13284 | Msa1361110:intergenic | 20.0% |
| !! | GAACAAATTAAAAGAAAAAG+TGG | + | tig0017348:13337-13356 | Msa1361110:intergenic | 20.0% |
| !!! | CATAAGAAGTATTAATTAAG+CGG | + | tig0017348:13691-13710 | Msa1361110:intergenic | 20.0% |
| !! | AGAAAGAAAAACAAAATTCA+TGG | - | tig0017348:14061-14080 | Msa1361110:intron | 20.0% |
| !!! | ATGAATTGAAACATTTTTTG+TGG | + | tig0017348:14201-14220 | Msa1361110:intergenic | 20.0% |
| ! | TCATATTCTTCTTTAAGCTT+TGG | + | tig0017348:4571-4590 | Msa1361110:intergenic | 25.0% |
| ! | AAATGGTTGAATTGAATAGA+AGG | - | tig0017348:4635-4654 | Msa1361110:CDS | 25.0% |
| !! | ATCTTTGGTTACATTGTTTT+TGG | + | tig0017348:4713-4732 | Msa1361110:intergenic | 25.0% |
| ! | ACAAAATAATCACATGCAAA+AGG | + | tig0017348:4769-4788 | Msa1361110:intergenic | 25.0% |
| ! | TGCAACTTCTTCAAAATATA+TGG | - | tig0017348:4865-4884 | Msa1361110:intron | 25.0% |
| ! | AACTTCTTCAAAATATATGG+TGG | - | tig0017348:4868-4887 | Msa1361110:intron | 25.0% |
| ! | TAGATATTGATCTATTGAAG+TGG | - | tig0017348:4982-5001 | Msa1361110:intron | 25.0% |
| !! | TTAAACTTATCATTTTCGGT+TGG | + | tig0017348:5199-5218 | Msa1361110:intergenic | 25.0% |
| ! | ATAAAGGATGAGTATGATAT+AGG | + | tig0017348:5234-5253 | Msa1361110:intergenic | 25.0% |
| ! | ACTAAGGATAAGAACAATAA+AGG | + | tig0017348:5250-5269 | Msa1361110:intergenic | 25.0% |
| !!! | TTGTTCTTATCCTTAGTTTT+TGG | - | tig0017348:5253-5272 | Msa1361110:intron | 25.0% |
| !! | CAATTTTCTCGTTTGAAAAT+TGG | + | tig0017348:5405-5424 | Msa1361110:intergenic | 25.0% |
| ! | GGTTTGTAATTTATTCTACA+GGG | + | tig0017348:5449-5468 | Msa1361110:intergenic | 25.0% |
| ! | AGGTTTGTAATTTATTCTAC+AGG | + | tig0017348:5450-5469 | Msa1361110:intergenic | 25.0% |
| ! | GTAATTCATAATATCAGGTT+GGG | + | tig0017348:5524-5543 | Msa1361110:intergenic | 25.0% |
| ! | TGTAATTCATAATATCAGGT+TGG | + | tig0017348:5525-5544 | Msa1361110:intergenic | 25.0% |
| ! | AGAGTGTAATTCATAATATC+AGG | + | tig0017348:5529-5548 | Msa1361110:intergenic | 25.0% |
| !!! | ATTGTGAACTATTTTGATGT+CGG | - | tig0017348:5763-5782 | Msa1361110:intron | 25.0% |
| !! | ATTTTATCCTATCATGTGTT+TGG | + | tig0017348:5916-5935 | Msa1361110:intergenic | 25.0% |
| !! | GCAGATACATATAGATTTTT+AGG | + | tig0017348:6075-6094 | Msa1361110:intergenic | 25.0% |
| ! | ATTGTAATTGTGATGATTTG+CGG | + | tig0017348:6374-6393 | Msa1361110:intergenic | 25.0% |
| ! | TACTTTCTTTGATCATTTAG+AGG | - | tig0017348:6393-6412 | Msa1361110:intron | 25.0% |
| ! | GTAAGAAACATTTAATTGGA+TGG | - | tig0017348:6827-6846 | Msa1361110:intron | 25.0% |
| !! | ATGAATCACACACAATTTTA+TGG | - | tig0017348:7070-7089 | Msa1361110:intron | 25.0% |
| ! | AACAATTTGTAACTTCTCAT+GGG | - | tig0017348:7235-7254 | Msa1361110:intron | 25.0% |
| ! | TAAGACATGGATAATGATTA+AGG | + | tig0017348:7383-7402 | Msa1361110:intergenic | 25.0% |
| !! | TCTATCTTTCTTCCTATTTT+GGG | - | tig0017348:7657-7676 | Msa1361110:intron | 25.0% |
| ! | TAGTTTGAGAGATAAATTCA+AGG | + | tig0017348:7744-7763 | Msa1361110:intergenic | 25.0% |
| ! | AACAATAAAGCCAGTATATA+TGG | - | tig0017348:7767-7786 | Msa1361110:intron | 25.0% |
| ! | CTAGAGGATATATATTGTTA+AGG | + | tig0017348:8131-8150 | Msa1361110:intergenic | 25.0% |
| ! | CTTAACAATATATATCCTCT+AGG | - | tig0017348:8129-8148 | Msa1361110:intron | 25.0% |
| ! | TTTAGGTATTAACTATTACG+TGG | + | tig0017348:8333-8352 | Msa1361110:intergenic | 25.0% |
| ! | CGTAATAGTTAATACCTAAA+TGG | - | tig0017348:8333-8352 | Msa1361110:intron | 25.0% |
| ! | ATACCTAAATGGATATAAGA+AGG | - | tig0017348:8344-8363 | Msa1361110:intron | 25.0% |
| ! | TACCTAAATGGATATAAGAA+GGG | - | tig0017348:8345-8364 | Msa1361110:intron | 25.0% |
| ! | TAACTCAATTAATAGCTACA+AGG | - | tig0017348:8470-8489 | Msa1361110:intron | 25.0% |
| ! | TGTTGTATACCAATTTATGT+AGG | - | tig0017348:8885-8904 | Msa1361110:intron | 25.0% |
| ! | GTTGTATACCAATTTATGTA+GGG | - | tig0017348:8886-8905 | Msa1361110:intron | 25.0% |
| ! | TCTCAAATGTTGTCAAAAAA+TGG | + | tig0017348:9276-9295 | Msa1361110:intergenic | 25.0% |
| ! | CAAAAAAAAAATCGATGCAA+TGG | + | tig0017348:9556-9575 | Msa1361110:intergenic | 25.0% |
| ! | TAATTTGGTTGTTGAAATTG+TGG | + | tig0017348:9610-9629 | Msa1361110:intergenic | 25.0% |
| ! | AATTGAAAAATCGATGTATG+TGG | - | tig0017348:9669-9688 | Msa1361110:intron | 25.0% |
| ! | GATGTATGTGGTTAAAAATT+CGG | - | tig0017348:9681-9700 | Msa1361110:intron | 25.0% |
| !! | TGTAAATTAATTTGAGGCTA+GGG | + | tig0017348:9794-9813 | Msa1361110:intergenic | 25.0% |
| !! | TTGTAAATTAATTTGAGGCT+AGG | + | tig0017348:9795-9814 | Msa1361110:intergenic | 25.0% |
| !! | TCTTATTGTGAATTTTCTTG+GGG | + | tig0017348:9902-9921 | Msa1361110:intergenic | 25.0% |
| !! | CTCTTATTGTGAATTTTCTT+GGG | + | tig0017348:9903-9922 | Msa1361110:intergenic | 25.0% |
| !! | TCTCTTATTGTGAATTTTCT+TGG | + | tig0017348:9904-9923 | Msa1361110:intergenic | 25.0% |
| ! | GCAAAATCACTCAAAAAAAA+AGG | + | tig0017348:10202-10221 | Msa1361110:intergenic | 25.0% |
| ! | AAGTGCAATTAAATACAAGA+AGG | + | tig0017348:10260-10279 | Msa1361110:intergenic | 25.0% |
| ! | CAAAATCATCATTAAAAGAG+GGG | + | tig0017348:10372-10391 | Msa1361110:intergenic | 25.0% |
| !! | GATTTTGAACAAAACACAAT+TGG | - | tig0017348:10385-10404 | Msa1361110:intron | 25.0% |
| ! | TAAATCGCTCAAAAAAAAGA+GGG | - | tig0017348:10423-10442 | Msa1361110:intron | 25.0% |
| ! | CTAATCATATTTCAATAACC+TGG | - | tig0017348:10519-10538 | Msa1361110:intron | 25.0% |
| !!! | TCTATCTTTAGGATTAATGT+TGG | + | tig0017348:10616-10635 | Msa1361110:intergenic | 25.0% |
| ! | TTACATTAGCTAGCATTAAT+TGG | + | tig0017348:10649-10668 | Msa1361110:intergenic | 25.0% |
| !! | TGTCTTTGAAAACAAAAATG+AGG | + | tig0017348:10700-10719 | Msa1361110:intergenic | 25.0% |
| !! | ACAACGATTTTATCTTCTTT+TGG | - | tig0017348:10717-10736 | Msa1361110:intron | 25.0% |
| ! | CAGTAAAATCTAAAAGCAAT+GGG | + | tig0017348:10960-10979 | Msa1361110:intergenic | 25.0% |
| ! | ACAGTAAAATCTAAAAGCAA+TGG | + | tig0017348:10961-10980 | Msa1361110:intergenic | 25.0% |
| ! | TTAAAAATTAATATGGACGG+TGG | + | tig0017348:11066-11085 | Msa1361110:intergenic | 25.0% |
| !! | TTTCTCTTTTGGTACTTTAA+GGG | + | tig0017348:11493-11512 | Msa1361110:intergenic | 25.0% |
| !! | TATTCATCAAGTTTCTCTTT+TGG | + | tig0017348:11504-11523 | Msa1361110:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | + | tig0017348:11567-11586 | Msa1361110:intergenic | 25.0% |
| ! | ATATAAACTAAGTGAAAGTG+TGG | - | tig0017348:11883-11902 | Msa1361110:intron | 25.0% |
| ! | AAAAAAAAAAAACAAAGGGG+TGG | - | tig0017348:12021-12040 | Msa1361110:intron | 25.0% |
| !!! | TCATATTTTTTGGTCAATTG+GGG | + | tig0017348:12057-12076 | Msa1361110:intergenic | 25.0% |
| !!! | CTTCATATTTTTTGGTCAAT+TGG | + | tig0017348:12059-12078 | Msa1361110:intergenic | 25.0% |
| ! | CATTTCAATGCTACATATTA+AGG | - | tig0017348:12084-12103 | Msa1361110:intron | 25.0% |
| !! | ACTTCTAGAAAATAAAGTGA+TGG | - | tig0017348:12111-12130 | Msa1361110:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | tig0017348:12263-12282 | Msa1361110:intergenic | 25.0% |
| !!! | TAAGCAAAAAACCACTTTTT+AGG | - | tig0017348:12165-12184 | Msa1361110:intron | 25.0% |
| ! | TATTCAATGAACCTAAAAAG+TGG | + | tig0017348:12179-12198 | Msa1361110:intergenic | 25.0% |
| !!! | TAAGCAAAAAACCACTTTTT+AGG | + | tig0017348:12165-12184 | Msa1361110:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | tig0017348:12263-12282 | Msa1361110:intron | 25.0% |
| !!! | ATTGAGTTTGTTACAACTTA+AGG | - | tig0017348:12317-12336 | Msa1361110:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | tig0017348:12764-12783 | Msa1361110:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | tig0017348:12763-12782 | Msa1361110:intergenic | 25.0% |
| !! | TGAAGATGGAAAATTTTTGA+GGG | + | tig0017348:12420-12439 | Msa1361110:intergenic | 25.0% |
| !! | AAATTTTCCATCTTCACTTT+TGG | - | tig0017348:12424-12443 | Msa1361110:intron | 25.0% |
| ! | TTATAAGGACTAAAAGTTGA+AGG | - | tig0017348:12750-12769 | Msa1361110:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | tig0017348:12763-12782 | Msa1361110:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | tig0017348:12764-12783 | Msa1361110:intron | 25.0% |
| !!! | CGAAAAGTTGATATATTTGT+AGG | - | tig0017348:12794-12813 | Msa1361110:intron | 25.0% |
| ! | CATCAAGTTTAAATAATGTC+TGG | - | tig0017348:12930-12949 | Msa1361110:intron | 25.0% |
| ! | CATTAAAAATGTGACATGAA+TGG | + | tig0017348:13100-13119 | Msa1361110:intergenic | 25.0% |
| !! | CATGTCACATTTTTAATGTA+CGG | - | tig0017348:13102-13121 | Msa1361110:intron | 25.0% |
| ! | TACCTGTTAAAATTCATGTT+TGG | + | tig0017348:13195-13214 | Msa1361110:intergenic | 25.0% |
| !! | TAACAGGTAAATAGTCATTT+TGG | - | tig0017348:13206-13225 | Msa1361110:intron | 25.0% |
| ! | TTCGATATATTGAGGAATTA+TGG | + | tig0017348:13257-13276 | Msa1361110:intergenic | 25.0% |
| ! | AATTAAAAGAAAAAGTGGAC+CGG | + | tig0017348:13332-13351 | Msa1361110:intergenic | 25.0% |
| !! | TTACCATGTTTTGTATCAAT+AGG | - | tig0017348:13438-13457 | Msa1361110:intron | 25.0% |
| ! | AAACCTATTGATACAAAACA+TGG | + | tig0017348:13444-13463 | Msa1361110:intergenic | 25.0% |
| !!! | GTTTTATTATCCTTAAACTC+AGG | - | tig0017348:14086-14105 | Msa1361110:intron | 25.0% |
| ! | TGTTTCAATTCATAATAAGC+TGG | - | tig0017348:14208-14227 | Msa1361110:CDS | 25.0% |
| ! | TCATATTCTTCTTTAAGCTT+TGG | + | tig0017348:4571-4590 | Msa1361110:intergenic | 25.0% |
| ! | AAATGGTTGAATTGAATAGA+AGG | - | tig0017348:4635-4654 | Msa1361110:CDS | 25.0% |
| !! | ATCTTTGGTTACATTGTTTT+TGG | + | tig0017348:4713-4732 | Msa1361110:intergenic | 25.0% |
| ! | ATGGTTTGGAAATGCTAATT+AGG | + | tig0017348:4252-4271 | Msa1149520:intergenic | 30.0% |
| GATATGATGTTGATATGGTT+TGG | + | tig0017348:4266-4285 | Msa1149520:intergenic | 30.0% | |
| ! | AAAGAGAGCATATAGAACAA+TGG | - | tig0017348:4444-4463 | Msa1361110:CDS | 30.0% |
| !! | ATATGACTTTGAGTTGAGTT+TGG | - | tig0017348:4585-4604 | Msa1361110:CDS | 30.0% |
| !! | TATGACTTTGAGTTGAGTTT+GGG | - | tig0017348:4586-4605 | Msa1361110:CDS | 30.0% |
| GTTGTTATCATGATCATCTT+TGG | + | tig0017348:4728-4747 | Msa1361110:intergenic | 30.0% | |
| !! | TTTTATTTGTGACTTGTGAG+CGG | - | tig0017348:4892-4911 | Msa1361110:intron | 30.0% |
| ATCCGATTATAATAGTTTGG+AGG | + | tig0017348:4918-4937 | Msa1361110:intergenic | 30.0% | |
| GCAATCCGATTATAATAGTT+TGG | + | tig0017348:4921-4940 | Msa1361110:intergenic | 30.0% | |
| TATTGATCTATTGAAGTGGA+TGG | - | tig0017348:4986-5005 | Msa1361110:intron | 30.0% | |
| TATATTCTCACATAGTGAAG+CGG | + | tig0017348:5089-5108 | Msa1361110:intergenic | 30.0% | |
| TTCTGACTAAATCTGTTGTT+TGG | - | tig0017348:5169-5188 | Msa1361110:intron | 30.0% | |
| !! | TTCTTATCCTTAGTTTTTGG+TGG | - | tig0017348:5256-5275 | Msa1361110:intron | 30.0% |
| !!! | TCTTATCCTTAGTTTTTGGT+GGG | - | tig0017348:5257-5276 | Msa1361110:intron | 30.0% |
| TGAAGAAACATGGAAAAAGA+GGG | + | tig0017348:5347-5366 | Msa1361110:intergenic | 30.0% | |
| ATGAAGAAACATGGAAAAAG+AGG | + | tig0017348:5348-5367 | Msa1361110:intergenic | 30.0% | |
| GAACAAAACATGAAGAAACA+TGG | + | tig0017348:5357-5376 | Msa1361110:intergenic | 30.0% | |
| AAATTCATTGGGAAGATATC+AGG | + | tig0017348:5470-5489 | Msa1361110:intergenic | 30.0% | |
| ! | ATCTTCCCAATGAATTTTCT+TGG | - | tig0017348:5473-5492 | Msa1361110:intron | 30.0% |
| TTATCCCAATCAATTTCAAC+CGG | - | tig0017348:5636-5655 | Msa1361110:intron | 30.0% | |
| TTTCAACCGGATGAAATTAA+AGG | - | tig0017348:5649-5668 | Msa1361110:intron | 30.0% | |
| CAATTATCCTATCATGTGTT+TGG | + | tig0017348:5969-5988 | Msa1361110:intergenic | 30.0% | |
| !!! | ATAGATTTTTAGGGTCTGAT+TGG | + | tig0017348:6065-6084 | Msa1361110:intergenic | 30.0% |
| ! | AAATACTGAGCATTGTCATT+AGG | + | tig0017348:6107-6126 | Msa1361110:intergenic | 30.0% |
| TCATTTCGATGATATAGTTG+TGG | + | tig0017348:6320-6339 | Msa1361110:intergenic | 30.0% | |
| TATGACGATGTTCATCATAA+GGG | + | tig0017348:6438-6457 | Msa1361110:intergenic | 30.0% | |
| ATGTATTAGTACCATTCAGA+GGG | - | tig0017348:6556-6575 | Msa1361110:intron | 30.0% | |
| !! | ATTACATTTCCTGGTTCTAT+AGG | - | tig0017348:6640-6659 | Msa1361110:intron | 30.0% |
| !! | TTACATTTCCTGGTTCTATA+GGG | - | tig0017348:6641-6660 | Msa1361110:intron | 30.0% |
| GAGGGTAAGAAACATTTAAT+TGG | - | tig0017348:6823-6842 | Msa1361110:intron | 30.0% | |
| ACCACGTACAATTATCTATA+CGG | - | tig0017348:6865-6884 | Msa1361110:intron | 30.0% | |
| TTGTTTAATCGACAATCTAC+TGG | + | tig0017348:6897-6916 | Msa1361110:intergenic | 30.0% | |
| ! | GATTGTCGATTAAACAAAGT+TGG | - | tig0017348:6900-6919 | Msa1361110:intron | 30.0% |
| GAACAATTTGTAACTTCTCA+TGG | - | tig0017348:7234-7253 | Msa1361110:intron | 30.0% | |
| ACAATTTGTAACTTCTCATG+GGG | - | tig0017348:7236-7255 | Msa1361110:intron | 30.0% | |
| ! | CATAGAGCATATTTAAGACA+TGG | + | tig0017348:7396-7415 | Msa1361110:intergenic | 30.0% |
| !! | TGCTCTATGTATTTTTGTAG+TGG | - | tig0017348:7407-7426 | Msa1361110:intron | 30.0% |
| !! | GCTCTATGTATTTTTGTAGT+GGG | - | tig0017348:7408-7427 | Msa1361110:intron | 30.0% |
| TTGAATGTAATCACATGTGT+TGG | + | tig0017348:7508-7527 | Msa1361110:intergenic | 30.0% | |
| ! | AAAGGAAAGCATATGGTATT+TGG | + | tig0017348:7607-7626 | Msa1361110:intergenic | 30.0% |
| ! | CTCTATCTTTCTTCCTATTT+TGG | - | tig0017348:7656-7675 | Msa1361110:intron | 30.0% |
| ! | CTATCTTTCTTCCTATTTTG+GGG | - | tig0017348:7658-7677 | Msa1361110:intron | 30.0% |
| !! | TATCTTTCTTCCTATTTTGG+GGG | - | tig0017348:7659-7678 | Msa1361110:intron | 30.0% |
| CTGGTTAAAGAATCTAAGAA+AGG | - | tig0017348:7973-7992 | Msa1361110:intron | 30.0% | |
| !! | TATATCCTCTAGGGTATAAT+TGG | - | tig0017348:8139-8158 | Msa1361110:intron | 30.0% |
| TAAAACCAATTATACCCTAG+AGG | + | tig0017348:8147-8166 | Msa1361110:intergenic | 30.0% | |
| !! | AAAAAGGTACCCTGTATTTA+AGG | + | tig0017348:8234-8253 | Msa1361110:intergenic | 30.0% |
| CTCAAATCATGTTACTCAAT+CGG | + | tig0017348:8389-8408 | Msa1361110:intergenic | 30.0% | |
| ATGCTCCATTTACTTCATTT+AGG | - | tig0017348:8548-8567 | Msa1361110:intron | 30.0% | |
| TGTGGCAAAAAGAGATTTAA+TGG | - | tig0017348:8588-8607 | Msa1361110:intron | 30.0% | |
| GTTTCTCATAGAAACTGAAA+GGG | + | tig0017348:8700-8719 | Msa1361110:intergenic | 30.0% | |
| AGTTTCTCATAGAAACTGAA+AGG | + | tig0017348:8701-8720 | Msa1361110:intergenic | 30.0% | |
| AGACTGTACAAGAAAATGAT+GGG | + | tig0017348:8787-8806 | Msa1361110:intergenic | 30.0% | |
| AAGACTGTACAAGAAAATGA+TGG | + | tig0017348:8788-8807 | Msa1361110:intergenic | 30.0% | |
| ! | TATCTGACCTATGATTTTGA+CGG | - | tig0017348:8828-8847 | Msa1361110:intron | 30.0% |
| AAACAAACCGTCAAAATCAT+AGG | + | tig0017348:8838-8857 | Msa1361110:intergenic | 30.0% | |
| !! | TGATTTTGACGGTTTGTTTA+AGG | - | tig0017348:8839-8858 | Msa1361110:intron | 30.0% |
| CAAAAAAGGATTCAATGGTT+CGG | + | tig0017348:9079-9098 | Msa1361110:intergenic | 30.0% | |
| TGTGACAAAAAAGGATTCAA+TGG | + | tig0017348:9084-9103 | Msa1361110:intergenic | 30.0% | |
| TGAATGACATGTGACAAAAA+AGG | + | tig0017348:9093-9112 | Msa1361110:intergenic | 30.0% | |
| TTCGAGAGAAAGTAGTAATT+TGG | + | tig0017348:9625-9644 | Msa1361110:intergenic | 30.0% | |
| ! | GTAAATTAATTTGAGGCTAG+GGG | + | tig0017348:9793-9812 | Msa1361110:intergenic | 30.0% |
| CATTTCTTGCACATAATTGA+AGG | + | tig0017348:9975-9994 | Msa1361110:intergenic | 30.0% | |
| CACAATTAACAAAAGATAGG+GGG | + | tig0017348:10167-10186 | Msa1361110:intergenic | 30.0% | |
| GCACAATTAACAAAAGATAG+GGG | + | tig0017348:10168-10187 | Msa1361110:intergenic | 30.0% | |
| CGCACAATTAACAAAAGATA+GGG | + | tig0017348:10169-10188 | Msa1361110:intergenic | 30.0% | |
| TCGCACAATTAACAAAAGAT+AGG | + | tig0017348:10170-10189 | Msa1361110:intergenic | 30.0% | |
| CGCTCAAAAAAAAAAGAAGA+GGG | + | tig0017348:10321-10340 | Msa1361110:intergenic | 30.0% | |
| TCGCTCAAAAAAAAAAGAAG+AGG | + | tig0017348:10322-10341 | Msa1361110:intergenic | 30.0% | |
| AAAACACAATTGGCAAAAGA+TGG | - | tig0017348:10395-10414 | Msa1361110:intron | 30.0% | |
| AAACACAATTGGCAAAAGAT+GGG | - | tig0017348:10396-10415 | Msa1361110:intron | 30.0% | |
| CTAAATCGCTCAAAAAAAAG+AGG | - | tig0017348:10422-10441 | Msa1361110:intron | 30.0% | |
| AAATCGCTCAAAAAAAAGAG+GGG | - | tig0017348:10424-10443 | Msa1361110:intron | 30.0% | |
| TCGCACAATTAGTAAAAGAT+AGG | - | tig0017348:10455-10474 | Msa1361110:intron | 30.0% | |
| CGCACAATTAGTAAAAGATA+GGG | - | tig0017348:10456-10475 | Msa1361110:intron | 30.0% | |
| GCACAATTAGTAAAAGATAG+GGG | - | tig0017348:10457-10476 | Msa1361110:intron | 30.0% | |
| CACAATTAGTAAAAGATAGG+GGG | - | tig0017348:10458-10477 | Msa1361110:intron | 30.0% | |
| ACAATTAGTAAAAGATAGGG+GGG | - | tig0017348:10459-10478 | Msa1361110:intron | 30.0% | |
| GTTGGATAATTTGACTACAT+TGG | + | tig0017348:10598-10617 | Msa1361110:intergenic | 30.0% | |
| !! | TCTTCTTTTGGCTATGTTTT+TGG | - | tig0017348:10729-10748 | Msa1361110:intron | 30.0% |
| CAGAAACTTGAAATGTTCAT+TGG | - | tig0017348:10763-10782 | Msa1361110:intron | 30.0% | |
| TATGAAAAGAAGAAGGGATT+AGG | - | tig0017348:10793-10812 | Msa1361110:intron | 30.0% | |
| TTTACATTTATATAGTCCGC+CGG | + | tig0017348:10883-10902 | Msa1361110:intergenic | 30.0% | |
| AAGACGTGATTATGTTGTTA+TGG | + | tig0017348:10994-11013 | Msa1361110:intergenic | 30.0% | |
| TAACAACATAATCACGTCTT+AGG | - | tig0017348:10994-11013 | Msa1361110:intron | 30.0% | |
| ! | AAAAAACAAAAGTGTGTTCG+CGG | - | tig0017348:11135-11154 | Msa1361110:intron | 30.0% |
| AAGCGACATATATTGTGAAA+CGG | + | tig0017348:11215-11234 | Msa1361110:intergenic | 30.0% | |
| !!! | TTCACAATATATGTCGCTTT+TGG | - | tig0017348:11216-11235 | Msa1361110:intron | 30.0% |
| !! | CACAATACTTATCGTTTTTG+AGG | + | tig0017348:11449-11468 | Msa1361110:intergenic | 30.0% |
| ! | GATAAGTATTGTGAAACAGA+GGG | - | tig0017348:11456-11475 | Msa1361110:intron | 30.0% |
| ! | GTTTCTCTTTTGGTACTTTA+AGG | + | tig0017348:11494-11513 | Msa1361110:intergenic | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | + | tig0017348:11585-11604 | Msa1361110:intergenic | 30.0% | |
| TAACAGTCAAAATTGTGCAT+TGG | - | tig0017348:11747-11766 | Msa1361110:intron | 30.0% | |
| ! | GTGAAGATGGAAAATTTTTG+AGG | + | tig0017348:12421-12440 | Msa1361110:intergenic | 30.0% |
| ! | GTTGTAGGGAAATATGTTTT+TGG | + | tig0017348:12822-12841 | Msa1361110:intergenic | 30.0% |
| CGTACTAGCAAATGATTTAA+TGG | + | tig0017348:13063-13082 | Msa1361110:intergenic | 30.0% | |
| ! | ACATTTTTAATGTACGGTCT+TGG | - | tig0017348:13108-13127 | Msa1361110:intron | 30.0% |
| CATGTTTGGCATAATTCAAT+AGG | + | tig0017348:13181-13200 | Msa1361110:intergenic | 30.0% | |
| !! | TGCCAAACATGAATTTTAAC+AGG | - | tig0017348:13190-13209 | Msa1361110:intron | 30.0% |
| GATATATTGAGGAATTATGG+TGG | + | tig0017348:13254-13273 | Msa1361110:intergenic | 30.0% | |
| AGTCAAAATAAAAACACGAC+CGG | - | tig0017348:13310-13329 | Msa1361110:intron | 30.0% | |
| !!! | TAAGTGATTGTTTTTTCTGG+AGG | + | tig0017348:13421-13440 | Msa1361110:intergenic | 30.0% |
| !!! | TGGTAAGTGATTGTTTTTTC+TGG | + | tig0017348:13424-13443 | Msa1361110:intergenic | 30.0% |
| ATAATAAATAGCACTGCTCT+TGG | - | tig0017348:13473-13492 | Msa1361110:intron | 30.0% | |
| AAATCTCTAATTAATGCGAG+AGG | + | tig0017348:13543-13562 | Msa1361110:intergenic | 30.0% | |
| TAACGACACAAAACAACTTT+AGG | + | tig0017348:13633-13652 | Msa1361110:intergenic | 30.0% | |
| ! | ATGGTTTGGAAATGCTAATT+AGG | + | tig0017348:4252-4271 | Msa1361110:intergenic | 30.0% |
| GATATGATGTTGATATGGTT+TGG | + | tig0017348:4266-4285 | Msa1361110:intergenic | 30.0% | |
| ! | AAAGAGAGCATATAGAACAA+TGG | - | tig0017348:4444-4463 | Msa1361110:CDS | 30.0% |
| !! | ATATGACTTTGAGTTGAGTT+TGG | - | tig0017348:4585-4604 | Msa1361110:CDS | 30.0% |
| !! | TATGACTTTGAGTTGAGTTT+GGG | - | tig0017348:4586-4605 | Msa1361110:CDS | 30.0% |
| GTTGTTATCATGATCATCTT+TGG | + | tig0017348:4728-4747 | Msa1361110:intergenic | 30.0% | |
| GGAAGGATATGATGTTGATA+TGG | + | tig0017348:4271-4290 | Msa1149520:intergenic | 35.0% | |
| TCATTCAACTCGTGATGAAT+TGG | + | tig0017348:4358-4377 | Msa1149520:intergenic | 35.0% | |
| ! | GAGTTGAATGATGATGATGA+TGG | - | tig0017348:4367-4386 | Msa1361110:CDS | 35.0% |
| ! | TCATCCATTGTTGCACTTTT+AGG | + | tig0017348:4421-4440 | Msa1361110:intergenic | 35.0% |
| TCATGATCGTTTGAAGAAAG+AGG | - | tig0017348:4492-4511 | Msa1361110:CDS | 35.0% | |
| TTTGAGAAGAAGTAGATGGA+TGG | - | tig0017348:4609-4628 | Msa1361110:CDS | 35.0% | |
| AAGTAGATGGATGGAACAAA+TGG | - | tig0017348:4618-4637 | Msa1361110:CDS | 35.0% | |
| GGCCTCCAAACTATTATAAT+CGG | - | tig0017348:4913-4932 | Msa1361110:intron | 35.0% | |
| CTATTGAAGTGGATGGAAAT+TGG | - | tig0017348:4993-5012 | Msa1361110:intron | 35.0% | |
| ACTCAAAAGTTTCGAGATGT+TGG | - | tig0017348:5041-5060 | Msa1361110:intron | 35.0% | |
| AAGAAACATGGAAAAAGAGG+GGG | + | tig0017348:5345-5364 | Msa1361110:intergenic | 35.0% | |
| GAAGAAACATGGAAAAAGAG+GGG | + | tig0017348:5346-5365 | Msa1361110:intergenic | 35.0% | |
| AGGTTGGGAAGATATAGATT+GGG | + | tig0017348:5509-5528 | Msa1361110:intergenic | 35.0% | |
| TCATCCGGTTGAAATTGATT+GGG | + | tig0017348:5643-5662 | Msa1361110:intergenic | 35.0% | |
| TTCATCCGGTTGAAATTGAT+TGG | + | tig0017348:5644-5663 | Msa1361110:intergenic | 35.0% | |
| TGGTTTGATGGAATGACAAA+GGG | - | tig0017348:5823-5842 | Msa1361110:intron | 35.0% | |
| GACAATGCTCAGTATTTATG+AGG | - | tig0017348:6110-6129 | Msa1361110:intron | 35.0% | |
| ! | GTATTTATGAGGAGTTGGTT+TGG | - | tig0017348:6121-6140 | Msa1361110:intron | 35.0% |
| !! | TGTCTTTAAGGTCTAAGCTA+TGG | - | tig0017348:6255-6274 | Msa1361110:intron | 35.0% |
| TTAAGGTCTAAGCTATGGAT+TGG | - | tig0017348:6260-6279 | Msa1361110:intron | 35.0% | |
| !! | TATGGATTGGAGCATTTCAT+TGG | - | tig0017348:6273-6292 | Msa1361110:intron | 35.0% |
| GTATGACGATGTTCATCATA+AGG | + | tig0017348:6439-6458 | Msa1361110:intergenic | 35.0% | |
| TCATCACAAGTTCAACAAAG+TGG | + | tig0017348:6526-6545 | Msa1361110:intergenic | 35.0% | |
| GATGTATTAGTACCATTCAG+AGG | - | tig0017348:6555-6574 | Msa1361110:intron | 35.0% | |
| GACATTCATCTCTGATATGA+CGG | + | tig0017348:6588-6607 | Msa1361110:intergenic | 35.0% | |
| !! | GCACTTCTAGTTTGTCTATT+TGG | + | tig0017348:6613-6632 | Msa1361110:intergenic | 35.0% |
| ! | GACAAACTAGAAGTGCATAT+CGG | - | tig0017348:6617-6636 | Msa1361110:intron | 35.0% |
| ATGAAATACCCTATAGAACC+AGG | + | tig0017348:6652-6671 | Msa1361110:intergenic | 35.0% | |
| AAAGTAGTGACTCCAATCAA+GGG | - | tig0017348:6675-6694 | Msa1361110:intron | 35.0% | |
| AAATACCCTATACCCTTGAT+TGG | + | tig0017348:6690-6709 | Msa1361110:intergenic | 35.0% | |
| GGTATTTCATTCCAAAGTAG+TGG | - | tig0017348:6662-6681 | Msa1361110:intron | 35.0% | |
| AAAGTAGTGGTTCCAATCAA+GGG | - | tig0017348:6716-6735 | Msa1361110:intron | 35.0% | |
| ACCGTATAGATAATTGTACG+TGG | + | tig0017348:6869-6888 | Msa1361110:intergenic | 35.0% | |
| ATCAAGTCACACATAAGAGA+CGG | - | tig0017348:6932-6951 | Msa1361110:intron | 35.0% | |
| TCGTGTGTTGAATTATGCTT+CGG | - | tig0017348:7166-7185 | Msa1361110:intron | 35.0% | |
| TTACAAACAATCCCTAGATC+AGG | + | tig0017348:7199-7218 | Msa1361110:intergenic | 35.0% | |
| CTTCTGATCAAATGTGTGTT+TGG | - | tig0017348:7456-7475 | Msa1361110:intron | 35.0% | |
| TGTCGTGTTTAGTATATGTC+TGG | - | tig0017348:7572-7591 | Msa1361110:intron | 35.0% | |
| GTCGTGTTTAGTATATGTCT+GGG | - | tig0017348:7573-7592 | Msa1361110:intron | 35.0% | |
| AAAGCATATGGTATTTGGCA+TGG | + | tig0017348:7602-7621 | Msa1361110:intergenic | 35.0% | |
| ! | AGTGTGTAAAGGAAAGCATA+TGG | + | tig0017348:7614-7633 | Msa1361110:intergenic | 35.0% |
| ! | AATCAACAGGAAGTGTGTAA+AGG | + | tig0017348:7625-7644 | Msa1361110:intergenic | 35.0% |
| !! | CTTCCTGTTGATTTCTTTCT+CGG | - | tig0017348:7632-7651 | Msa1361110:intron | 35.0% |
| CTTATTGGATCATGGTTGTA+TGG | - | tig0017348:7716-7735 | Msa1361110:intron | 35.0% | |
| AAAATGCACGGCATACAATA+TGG | - | tig0017348:7865-7884 | Msa1361110:intron | 35.0% | |
| ACTGGTGAAGAAGACAAATA+TGG | + | tig0017348:8083-8102 | Msa1361110:intergenic | 35.0% | |
| TTGTTAAGGGAAATGCTAAC+CGG | + | tig0017348:8117-8136 | Msa1361110:intergenic | 35.0% | |
| GTAAGCACGTCACTAAAAAA+AGG | + | tig0017348:8250-8269 | Msa1361110:intergenic | 35.0% | |
| AGGTATTAACTATTACGTGG+TGG | + | tig0017348:8330-8349 | Msa1361110:intergenic | 35.0% | |
| TGCCCTTCTTATATCCATTT+AGG | + | tig0017348:8350-8369 | Msa1361110:intergenic | 35.0% | |
| TGGATATAAGAAGGGCAATA+TGG | - | tig0017348:8353-8372 | Msa1361110:intron | 35.0% | |
| CGATTGAGTAACATGATTTG+AGG | - | tig0017348:8387-8406 | Msa1361110:intron | 35.0% | |
| TACAAGGACGTTGATATAGA+GGG | - | tig0017348:8486-8505 | Msa1361110:intron | 35.0% | |
| ! | GATTTTGGATGAATGACATG+TGG | - | tig0017348:8570-8589 | Msa1361110:intron | 35.0% |
| CATTCATCCAAGATCCTAAA+TGG | - | tig0017348:9107-9126 | Msa1361110:intron | 35.0% | |
| ATTTACCACATGCTCCATTT+AGG | + | tig0017348:9124-9143 | Msa1361110:intergenic | 35.0% | |
| TAAATGGAGCATGTGGTAAA+TGG | - | tig0017348:9123-9142 | Msa1361110:intron | 35.0% | |
| TCTCCACTACTCTATACTTA+AGG | - | tig0017348:9162-9181 | Msa1361110:intron | 35.0% | |
| TGGTTGTTGAAATTGTGGTT+GGG | + | tig0017348:9605-9624 | Msa1361110:intergenic | 35.0% | |
| TTGGTTGTTGAAATTGTGGT+TGG | + | tig0017348:9606-9625 | Msa1361110:intergenic | 35.0% | |
| CTCGAACATGATCATATTGA+GGG | + | tig0017348:9863-9882 | Msa1361110:intergenic | 35.0% | |
| !!! | CTCATTTTTGGCCTCATTAT+TGG | - | tig0017348:9946-9965 | Msa1361110:intron | 35.0% |
| ATTGAAGGTGACCAATAATG+AGG | + | tig0017348:9960-9979 | Msa1361110:intergenic | 35.0% | |
| !!! | CTTTATTTTTTAGTGGCAGC+CGG | + | tig0017348:10128-10147 | Msa1361110:intergenic | 35.0% |
| CACAATTGGCAAAAAGATAG+GGG | + | tig0017348:10286-10305 | Msa1361110:intergenic | 35.0% | |
| GCACAATTGGCAAAAAGATA+GGG | + | tig0017348:10287-10306 | Msa1361110:intergenic | 35.0% | |
| TCATTAAAAGAGGGGAAATG+CGG | + | tig0017348:10364-10383 | Msa1361110:intergenic | 35.0% | |
| AACACAATTGGCAAAAGATG+GGG | - | tig0017348:10397-10416 | Msa1361110:intron | 35.0% | |
| AATCGCTCAAAAAAAAGAGG+GGG | - | tig0017348:10425-10444 | Msa1361110:intron | 35.0% | |
| CATTGACATGCATATATACC+AGG | + | tig0017348:10540-10559 | Msa1361110:intergenic | 35.0% | |
| ATTAGCTAGCATTAATTGGC+AGG | + | tig0017348:10645-10664 | Msa1361110:intergenic | 35.0% | |
| ! | TTCAAGTTTCTGTGTCCATA+AGG | + | tig0017348:10755-10774 | Msa1361110:intergenic | 35.0% |
| GGGTCAAATGGTTCATTTAT+AGG | + | tig0017348:10858-10877 | Msa1361110:intergenic | 35.0% | |
| ! | CAAACACAAATTGGGTTGTT+TGG | - | tig0017348:10917-10936 | Msa1361110:intron | 35.0% |
| ! | TTGTTTGGAACAGTCAAACA+TGG | - | tig0017348:10932-10951 | Msa1361110:intron | 35.0% |
| GACATATATTGTGAAACGGA+AGG | + | tig0017348:11211-11230 | Msa1361110:intergenic | 35.0% | |
| ! | CGATAAGTATTGTGAAACAG+AGG | - | tig0017348:11455-11474 | Msa1361110:intron | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | tig0017348:11792-11811 | Msa1361110:intergenic | 35.0% |
| TATATGTGAAGTGGTTGACT+GGG | - | tig0017348:11770-11789 | Msa1361110:intron | 35.0% | |
| !! | CTGGGACATGTATTTTGAAA+CGG | - | tig0017348:11788-11807 | Msa1361110:intron | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+TGG | - | tig0017348:11792-11811 | Msa1361110:intron | 35.0% |
| ! | AAGTGAAAGTGTGGCATTAA+AGG | - | tig0017348:11892-11911 | Msa1361110:intron | 35.0% |
| ! | AGTGAAAGTGTGGCATTAAA+GGG | - | tig0017348:11893-11912 | Msa1361110:intron | 35.0% |
| GGTGAACAGTGAATATTCAT+GGG | + | tig0017348:11924-11943 | Msa1361110:intergenic | 35.0% | |
| AACACCGTGTAATACAACAA+AGG | - | tig0017348:11976-11995 | Msa1361110:intron | 35.0% | |
| ACACCGTGTAATACAACAAA+GGG | - | tig0017348:11977-11996 | Msa1361110:intron | 35.0% | |
| !!! | ATTTTTTGGTCAATTGGGGT+GGG | + | tig0017348:12053-12072 | Msa1361110:intergenic | 35.0% |
| !!! | TATTTTTTGGTCAATTGGGG+TGG | + | tig0017348:12054-12073 | Msa1361110:intergenic | 35.0% |
| TTTGAGGGACTAAAAGTTGA+AGG | + | tig0017348:12405-12424 | Msa1361110:intergenic | 35.0% | |
| TGGCATAATTCAATAGGTTC+AGG | + | tig0017348:13175-13194 | Msa1361110:intergenic | 35.0% | |
| GCTTGATAGATTTCAAGAGA+GGG | + | tig0017348:13393-13412 | Msa1361110:intergenic | 35.0% | |
| TGCTTGATAGATTTCAAGAG+AGG | + | tig0017348:13394-13413 | Msa1361110:intergenic | 35.0% | |
| GGTTGTATATGATCAGGAAA+TGG | + | tig0017348:13580-13599 | Msa1361110:intergenic | 35.0% | |
| AACTTCGGTTGTATATGATC+AGG | + | tig0017348:13586-13605 | Msa1361110:intergenic | 35.0% | |
| GGAAGGATATGATGTTGATA+TGG | + | tig0017348:4271-4290 | Msa1361110:intergenic | 35.0% | |
| ! | TCATCCATTGTTGCACTTTT+AGG | + | tig0017348:4421-4440 | Msa1361110:intergenic | 35.0% |
| AAACGATCATGACACAAATC+AGG | + | tig0017348:14335-14354 | Msa1361110:intergenic | 35.0% | |
| TCATGATCGTTTGAAGAAAG+AGG | - | tig0017348:4492-4511 | Msa1361110:CDS | 35.0% | |
| TTTGAGAAGAAGTAGATGGA+TGG | - | tig0017348:4609-4628 | Msa1361110:CDS | 35.0% | |
| AAGTAGATGGATGGAACAAA+TGG | - | tig0017348:4618-4637 | Msa1361110:CDS | 35.0% | |
| GTTGTCTATTTGAGAGTGGA+AGG | + | tig0017348:4288-4307 | Msa1149520:intergenic | 40.0% | |
| ! | GAGTCCTAAAAGTGCAACAA+TGG | - | tig0017348:4414-4433 | Msa1361110:CDS | 40.0% |
| AAACGATCATGACACACATC+AGG | + | tig0017348:4484-4503 | Msa1361110:intergenic | 40.0% | |
| TGAAGAAAGAGGAATCAACG+AGG | - | tig0017348:4503-4522 | Msa1361110:CDS | 40.0% | |
| TGGGTTTGAGAAGAAGTAGA+TGG | - | tig0017348:4605-4624 | Msa1361110:CDS | 40.0% | |
| ATCATGGGGTAGTAGAATGA+GGG | - | tig0017348:4687-4706 | Msa1361110:CDS | 40.0% | |
| GAAGCGGTACAGTAACATAT+GGG | + | tig0017348:5073-5092 | Msa1361110:intergenic | 40.0% | |
| TGAAGCGGTACAGTAACATA+TGG | + | tig0017348:5074-5093 | Msa1361110:intergenic | 40.0% | |
| ! | GAAGGTTTTACTACGAATGG+AGG | + | tig0017348:5320-5339 | Msa1361110:intergenic | 40.0% |
| ! | GTCGAAGGTTTTACTACGAA+TGG | + | tig0017348:5323-5342 | Msa1361110:intergenic | 40.0% |
| ! | CAGGTTGGGAAGATATAGAT+TGG | + | tig0017348:5510-5529 | Msa1361110:intergenic | 40.0% |
| TTGGTTGCTGCACATGAATT+AGG | - | tig0017348:5726-5745 | Msa1361110:intron | 40.0% | |
| TGGTTGCTGCACATGAATTA+GGG | - | tig0017348:5727-5746 | Msa1361110:intron | 40.0% | |
| GAGACAATTGCCCATGAATT+GGG | - | tig0017348:5792-5811 | Msa1361110:intron | 40.0% | |
| AGACAATTGCCCATGAATTG+GGG | - | tig0017348:5793-5812 | Msa1361110:intron | 40.0% | |
| CAGATTCATCCCCAATTCAT+GGG | + | tig0017348:5805-5824 | Msa1361110:intergenic | 40.0% | |
| ! | CTGGTTTGATGGAATGACAA+AGG | - | tig0017348:5822-5841 | Msa1361110:intron | 40.0% |
| GGTTTGATGGAATGACAAAG+GGG | - | tig0017348:5824-5843 | Msa1361110:intron | 40.0% | |
| GCTCAGTATTTATGAGGAGT+TGG | - | tig0017348:6116-6135 | Msa1361110:intron | 40.0% | |
| TCGAAATGACATATGCAGTG+CGG | - | tig0017348:6331-6350 | Msa1361110:intron | 40.0% | |
| GTCTATTCGACGACATATGT+AGG | - | tig0017348:6461-6480 | Msa1361110:intron | 40.0% | |
| ! | GAACTTGTGATGACGCAATA+TGG | - | tig0017348:6533-6552 | Msa1361110:intron | 40.0% |
| ! | TTCATCTCTGATATGACGGA+AGG | + | tig0017348:6584-6603 | Msa1361110:intergenic | 40.0% |
| GCATATCGGATTACATTTCC+TGG | - | tig0017348:6631-6650 | Msa1361110:intron | 40.0% | |
| CTTGATTGGAGTCACTACTT+TGG | + | tig0017348:6676-6695 | Msa1361110:intergenic | 40.0% | |
| CAAAGTAGTGACTCCAATCA+AGG | - | tig0017348:6674-6693 | Msa1361110:intron | 40.0% | |
| ! | TGACTCCAATCAAGGGTATA+GGG | - | tig0017348:6682-6701 | Msa1361110:intron | 40.0% |
| CTTGATTGGAACCACTACTT+TGG | + | tig0017348:6717-6736 | Msa1361110:intergenic | 40.0% | |
| CAAAGTAGTGGTTCCAATCA+AGG | - | tig0017348:6715-6734 | Msa1361110:intron | 40.0% | |
| TGGACACCTTGAAGCTATTT+AGG | - | tig0017348:6801-6820 | Msa1361110:intron | 40.0% | |
| ACACCTTGAAGCTATTTAGG+AGG | - | tig0017348:6804-6823 | Msa1361110:intron | 40.0% | |
| CACCTTGAAGCTATTTAGGA+GGG | - | tig0017348:6805-6824 | Msa1361110:intron | 40.0% | |
| TACCCTCCTAAATAGCTTCA+AGG | + | tig0017348:6810-6829 | Msa1361110:intergenic | 40.0% | |
| ATGTGTGACTTGATACTGAG+TGG | + | tig0017348:6926-6945 | Msa1361110:intergenic | 40.0% | |
| ACATTCAAGGGGAATTGTTG+AGG | + | tig0017348:7027-7046 | Msa1361110:intergenic | 40.0% | |
| ! | TTCGGTGTAATTCCTGATCT+AGG | - | tig0017348:7184-7203 | Msa1361110:intron | 40.0% |
| TCGGTGTAATTCCTGATCTA+GGG | - | tig0017348:7185-7204 | Msa1361110:intron | 40.0% | |
| TGGCTTTCTTAACCAATGTC+TGG | - | tig0017348:7313-7332 | Msa1361110:intron | 40.0% | |
| AGACCGAGAAAGAAATCAAC+AGG | + | tig0017348:7638-7657 | Msa1361110:intergenic | 40.0% | |
| AATCTGTCAACCCCCAAAAT+AGG | + | tig0017348:7672-7691 | Msa1361110:intergenic | 40.0% | |
| GGTTGACAGATTGATTGCAA+TGG | - | tig0017348:7680-7699 | Msa1361110:intron | 40.0% | |
| GACAGATTGATTGCAATGGA+AGG | - | tig0017348:7684-7703 | Msa1361110:intron | 40.0% | |
| CATGATCCAATAAGTGTCCA+TGG | + | tig0017348:7710-7729 | Msa1361110:intergenic | 40.0% | |
| CATGGACACTTATTGGATCA+TGG | - | tig0017348:7708-7727 | Msa1361110:intron | 40.0% | |
| ! | CATTTGGATGATGGTTTCAG+TGG | + | tig0017348:7903-7922 | Msa1361110:intergenic | 40.0% |
| AACAATAGGGTCATGCTAAC+CGG | - | tig0017348:7937-7956 | Msa1361110:intron | 40.0% | |
| !! | CTAGCTTGGCCTTAAATACA+GGG | - | tig0017348:8222-8241 | Msa1361110:intron | 40.0% |
| TACCCATTCAAATGCTCACT+TGG | - | tig0017348:8267-8286 | Msa1361110:intron | 40.0% | |
| CACCAAGTGAGCATTTGAAT+GGG | + | tig0017348:8272-8291 | Msa1361110:intergenic | 40.0% | |
| TCACCAAGTGAGCATTTGAA+TGG | + | tig0017348:8273-8292 | Msa1361110:intergenic | 40.0% | |
| !! | TTACGTGGTGGCTTTATTGT+AGG | + | tig0017348:8318-8337 | Msa1361110:intergenic | 40.0% |
| CTACAAGGACGTTGATATAG+AGG | - | tig0017348:8485-8504 | Msa1361110:intron | 40.0% | |
| TGAAGTAAATGGAGCATACC+AGG | + | tig0017348:8545-8564 | Msa1361110:intergenic | 40.0% | |
| GAAACTGAAAGGGAGAAGAA+AGG | + | tig0017348:8690-8709 | Msa1361110:intergenic | 40.0% | |
| ! | GTGACTTGCCCTACATAAAT+TGG | + | tig0017348:8897-8916 | Msa1361110:intergenic | 40.0% |
| ATCCTGCGAGGAAGATTAAT+TGG | - | tig0017348:8937-8956 | Msa1361110:intron | 40.0% | |
| TCCTGCGAGGAAGATTAATT+GGG | - | tig0017348:8938-8957 | Msa1361110:intron | 40.0% | |
| AAGATTAATTGGGCAGCCAT+GGG | - | tig0017348:8948-8967 | Msa1361110:intron | 40.0% | |
| ! | ACATGCTCCATTTAGGATCT+TGG | + | tig0017348:9117-9136 | Msa1361110:intergenic | 40.0% |
| AAGATCCTAAATGGAGCATG+TGG | - | tig0017348:9116-9135 | Msa1361110:intron | 40.0% | |
| GCACCTTAAGTATAGAGTAG+TGG | + | tig0017348:9168-9187 | Msa1361110:intergenic | 40.0% | |
| GGTTGTTGAAATTGTGGTTG+GGG | + | tig0017348:9604-9623 | Msa1361110:intergenic | 40.0% | |
| AGCTAAACATAACTCCCTCT+TGG | + | tig0017348:9743-9762 | Msa1361110:intergenic | 40.0% | |
| GCTCGAACATGATCATATTG+AGG | + | tig0017348:9864-9883 | Msa1361110:intergenic | 40.0% | |
| CAATATGATCATGTTCGAGC+TGG | - | tig0017348:9864-9883 | Msa1361110:intron | 40.0% | |
| ! | TTGTGAATTTTCTTGGGGCA+TGG | + | tig0017348:9897-9916 | Msa1361110:intergenic | 40.0% |
| ! | TGAGCTTAGCTTAGTTGGTA+AGG | - | tig0017348:10066-10085 | Msa1361110:intron | 40.0% |
| CGGCTGCCACTAAAAAATAA+AGG | - | tig0017348:10126-10145 | Msa1361110:intron | 40.0% | |
| AAGGTCCATCTAACCAGAAA+GGG | + | tig0017348:10241-10260 | Msa1361110:intergenic | 40.0% | |
| CGCACAATTGGCAAAAAGAT+AGG | + | tig0017348:10288-10307 | Msa1361110:intergenic | 40.0% | |
| GGAATGCAAAATCGCACAAT+TGG | + | tig0017348:10300-10319 | Msa1361110:intergenic | 40.0% | |
| ! | TTGCTGTCTCATTCCCTTTT+GGG | - | tig0017348:10570-10589 | Msa1361110:intron | 40.0% |
| !! | GCAGGCCTTATTCTATCTTT+AGG | + | tig0017348:10627-10646 | Msa1361110:intergenic | 40.0% |
| !!! | TGGCTATGTTTTTGGCCTTA+TGG | - | tig0017348:10737-10756 | Msa1361110:intron | 40.0% |
| TGGAGCTAGCAAACACAAAT+TGG | - | tig0017348:10908-10927 | Msa1361110:intron | 40.0% | |
| GGAGCTAGCAAACACAAATT+GGG | - | tig0017348:10909-10928 | Msa1361110:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | tig0017348:11791-11810 | Msa1361110:intergenic | 40.0% |
| ! | GTGCATTGGTATATGTGAAG+TGG | - | tig0017348:11761-11780 | Msa1361110:intron | 40.0% |
| GTATATGTGAAGTGGTTGAC+TGG | - | tig0017348:11769-11788 | Msa1361110:intron | 40.0% | |
| GGGTGAACAGTGAATATTCA+TGG | + | tig0017348:11925-11944 | Msa1361110:intergenic | 40.0% | |
| ! | TTAGTCTCTCGTTGTTTCGT+GGG | + | tig0017348:11957-11976 | Msa1361110:intergenic | 40.0% |
| ! | TTTAGTCTCTCGTTGTTTCG+TGG | + | tig0017348:11958-11977 | Msa1361110:intergenic | 40.0% |
| CACCGTGTAATACAACAAAG+GGG | - | tig0017348:11978-11997 | Msa1361110:intron | 40.0% | |
| ! | CACCCCTTTGTTGTATTACA+CGG | + | tig0017348:11983-12002 | Msa1361110:intergenic | 40.0% |
| GTATGTTGAAATACTCCCTC+CGG | - | tig0017348:12133-12152 | Msa1361110:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | tig0017348:12267-12286 | Msa1361110:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | tig0017348:12266-12285 | Msa1361110:intergenic | 40.0% | |
| ! | TGCTAGTACGACACTTTTAC+AGG | - | tig0017348:13073-13092 | Msa1361110:intron | 40.0% |
| ! | GCTAGTACGACACTTTTACA+GGG | - | tig0017348:13074-13093 | Msa1361110:intron | 40.0% |
| ! | TAATGTACGGTCTTGGTGTA+AGG | - | tig0017348:13115-13134 | Msa1361110:intron | 40.0% |
| ! | AATGTACGGTCTTGGTGTAA+GGG | - | tig0017348:13116-13135 | Msa1361110:intron | 40.0% |
| !! | AGGTCTTGTTGATCAAATGC+AGG | + | tig0017348:13155-13174 | Msa1361110:intergenic | 40.0% |
| TCTCTAATTAATGCGAGAGG+TGG | + | tig0017348:13540-13559 | Msa1361110:intergenic | 40.0% | |
| GATCAGGAAATGGTCTTCAT+CGG | + | tig0017348:13570-13589 | Msa1361110:intergenic | 40.0% | |
| ! | GTTTTCTGCATGGTGATCAT+CGG | + | tig0017348:13874-13893 | Msa1361110:intergenic | 40.0% |
| GCTAATTAGGCCTGAGTTTA+AGG | + | tig0017348:14099-14118 | Msa1361110:intergenic | 40.0% | |
| GTTGTCTATTTGAGAGTGGA+AGG | + | tig0017348:4288-4307 | Msa1361110:intergenic | 40.0% | |
| GAAACACAAAACTGCATACG+AGG | + | tig0017348:14170-14189 | Msa1361110:intergenic | 40.0% | |
| ! | GAGTCCTAAAAGTGCAACAA+TGG | - | tig0017348:4414-4433 | Msa1361110:CDS | 40.0% |
| TGAAGAAAGAGGAATCAACG+AGG | - | tig0017348:4503-4522 | Msa1361110:CDS | 40.0% | |
| TGGGTTTGAGAAGAAGTAGA+TGG | - | tig0017348:4605-4624 | Msa1361110:CDS | 40.0% | |
| ATCATGGGGTAGTAGAATGA+GGG | - | tig0017348:4687-4706 | Msa1361110:CDS | 40.0% | |
| CGAGGTTGTCTATTTGAGAG+TGG | + | tig0017348:4292-4311 | Msa1149520:intergenic | 45.0% | |
| GAAACGCAAAACTGCATACG+AGG | + | tig0017348:4310-4329 | Msa1149520:intergenic | 45.0% | |
| TAGAAGGTCTCATACACGTG+AGG | - | tig0017348:4651-4670 | Msa1361110:CDS | 45.0% | |
| AGGCTGGATCATCATCATCA+TGG | - | tig0017348:4671-4690 | Msa1361110:CDS | 45.0% | |
| GGCTGGATCATCATCATCAT+GGG | - | tig0017348:4672-4691 | Msa1361110:CDS | 45.0% | |
| GCTGGATCATCATCATCATG+GGG | - | tig0017348:4673-4692 | Msa1361110:CDS | 45.0% | |
| CATCATGGGGTAGTAGAATG+AGG | - | tig0017348:4686-4705 | Msa1361110:CDS | 45.0% | |
| ! | TTGGTATTTTCGGCGCACTA+CGG | - | tig0017348:4959-4978 | Msa1361110:intron | 45.0% |
| GCGCATCAAATATGCCGTTA+AGG | + | tig0017348:5117-5136 | Msa1361110:intergenic | 45.0% | |
| TGCTGACCCACCAAAAACTA+AGG | + | tig0017348:5266-5285 | Msa1361110:intergenic | 45.0% | |
| !! | TTTTTGGTGGGTCAGCAACA+TGG | - | tig0017348:5269-5288 | Msa1361110:intron | 45.0% |
| CGAGACAATTGCCCATGAAT+TGG | - | tig0017348:5791-5810 | Msa1361110:intron | 45.0% | |
| CCAGATTCATCCCCAATTCA+TGG | + | tig0017348:5806-5825 | Msa1361110:intergenic | 45.0% | |
| CCATGAATTGGGGATGAATC+TGG | - | tig0017348:5803-5822 | Msa1361110:intron | 45.0% | |
| ! | TGGGGATGAATCTGGTTTGA+TGG | - | tig0017348:5811-5830 | Msa1361110:intron | 45.0% |
| TGATGGAATGACAAAGGGGA+CGG | - | tig0017348:5828-5847 | Msa1361110:intron | 45.0% | |
| GTGTGCACCAAACACATGAT+AGG | - | tig0017348:5906-5925 | Msa1361110:intron | 45.0% | |
| GTGTGCACCAAACACATGAT+AGG | - | tig0017348:5906-5925 | Msa1361110:intron | 45.0% | |
| ! | GTGACTCCAATCAAGGGTAT+AGG | - | tig0017348:6681-6700 | Msa1361110:intron | 45.0% |
| TTAGGCAGATCTCCCTTGAT+TGG | + | tig0017348:6731-6750 | Msa1361110:intergenic | 45.0% | |
| ATCAGAACCTCCACAATTGC+TGG | + | tig0017348:6755-6774 | Msa1361110:intergenic | 45.0% | |
| ! | GATAGAAGAAGAGCATGCCA+TGG | - | tig0017348:6772-6791 | Msa1361110:intron | 45.0% |
| AGAGCATGCCATGGATACTT+TGG | - | tig0017348:6781-6800 | Msa1361110:intron | 45.0% | |
| ! | CAAGGTGTCCAAAGTATCCA+TGG | + | tig0017348:6792-6811 | Msa1361110:intergenic | 45.0% |
| TTGATTGCAATGGAAGGCCA+TGG | - | tig0017348:7690-7709 | Msa1361110:intron | 45.0% | |
| ATCACGGTGCACACAAAGTT+TGG | + | tig0017348:8184-8203 | Msa1361110:intergenic | 45.0% | |
| GTGCTAAGATCCAACGATCA+CGG | + | tig0017348:8200-8219 | Msa1361110:intergenic | 45.0% | |
| !! | GCTAGCTTGGCCTTAAATAC+AGG | - | tig0017348:8221-8240 | Msa1361110:intron | 45.0% |
| ATGAATTCTCCACTGAGTCC+TGG | - | tig0017348:8524-8543 | Msa1361110:intron | 45.0% | |
| GAGAGGAGGAGAAATGTAGA+GGG | + | tig0017348:8662-8681 | Msa1361110:intergenic | 45.0% | |
| AGAGAGGAGGAGAAATGTAG+AGG | + | tig0017348:8663-8682 | Msa1361110:intergenic | 45.0% | |
| GAAGATTAATTGGGCAGCCA+TGG | - | tig0017348:8947-8966 | Msa1361110:intron | 45.0% | |
| AGACAATGCAACCTCAAGTG+CGG | - | tig0017348:9921-9940 | Msa1361110:intron | 45.0% | |
| AAAAATGAGACCCGCACTTG+AGG | + | tig0017348:9935-9954 | Msa1361110:intergenic | 45.0% | |
| ! | TCAAGTGCGGGTCTCATTTT+TGG | - | tig0017348:9934-9953 | Msa1361110:intron | 45.0% |
| CTTCGTGAGCTTAGCTTAGT+TGG | - | tig0017348:10061-10080 | Msa1361110:intron | 45.0% | |
| CAAAGTCTGGATTCGAACTC+CGG | - | tig0017348:10106-10125 | Msa1361110:intron | 45.0% | |
| TAACCAGAAAGGGGGCAAAA+AGG | + | tig0017348:10231-10250 | Msa1361110:intergenic | 45.0% | |
| AGGTCCATCTAACCAGAAAG+GGG | + | tig0017348:10240-10259 | Msa1361110:intergenic | 45.0% | |
| GAAGGTCCATCTAACCAGAA+AGG | + | tig0017348:10242-10261 | Msa1361110:intergenic | 45.0% | |
| ! | GTTGCTGTCTCATTCCCTTT+TGG | - | tig0017348:10569-10588 | Msa1361110:intron | 45.0% |
| ! | TGCTGTCTCATTCCCTTTTG+GGG | - | tig0017348:10571-10590 | Msa1361110:intron | 45.0% |
| GACTACATTGGACCCCAAAA+GGG | + | tig0017348:10586-10605 | Msa1361110:intergenic | 45.0% | |
| TGACTACATTGGACCCCAAA+AGG | + | tig0017348:10587-10606 | Msa1361110:intergenic | 45.0% | |
| AATGAACCATTTGACCCTGC+CGG | - | tig0017348:10861-10880 | Msa1361110:intron | 45.0% | |
| ATTTATATAGTCCGCCGGCA+GGG | + | tig0017348:10878-10897 | Msa1361110:intergenic | 45.0% | |
| ! | GAAAGTGTGGCATTAAAGGG+TGG | - | tig0017348:11896-11915 | Msa1361110:intron | 45.0% |
| TGTTTCGTGGGAAGAAGGTT+GGG | + | tig0017348:11945-11964 | Msa1361110:intergenic | 45.0% | |
| TTGTTTCGTGGGAAGAAGGT+TGG | + | tig0017348:11946-11965 | Msa1361110:intergenic | 45.0% | |
| CGTGTAATACAACAAAGGGG+TGG | - | tig0017348:11981-12000 | Msa1361110:intron | 45.0% | |
| AGAGCGACCAAAAGTGAAGA+TGG | + | tig0017348:12434-12453 | Msa1361110:intergenic | 45.0% | |
| ! | ATGTCTACGCGTTTTCTGCA+TGG | + | tig0017348:13884-13903 | Msa1361110:intergenic | 45.0% |
| CGAGGTTGTCTATTTGAGAG+TGG | + | tig0017348:4292-4311 | Msa1361110:intergenic | 45.0% | |
| AGGCTGGATCATCATCATCA+TGG | - | tig0017348:4671-4690 | Msa1361110:CDS | 45.0% | |
| GGCTGGATCATCATCATCAT+GGG | - | tig0017348:4672-4691 | Msa1361110:CDS | 45.0% | |
| GCTGGATCATCATCATCATG+GGG | - | tig0017348:4673-4692 | Msa1361110:CDS | 45.0% | |
| CATCATGGGGTAGTAGAATG+AGG | - | tig0017348:4686-4705 | Msa1361110:CDS | 45.0% | |
| !!! | ATTTTTAATTTAATATGTAT+TGG | - | tig0017348:6203-6222 | Msa1361110:intron | 5.0% |
| !! | TTTATAAATTTAAAAGTAAA+GGG | + | tig0017348:7348-7367 | Msa1361110:intergenic | 5.0% |
| !!! | TTTTATAAATTTAAAAGTAA+AGG | + | tig0017348:7349-7368 | Msa1361110:intergenic | 5.0% |
| !! | GAATAAAATATAAATAAATA+GGG | + | tig0017348:9721-9740 | Msa1361110:intergenic | 5.0% |
| !! | TAATAGAATAAAATAATAAA+TGG | - | tig0017348:11342-11361 | Msa1361110:intron | 5.0% |
| !!! | TTGTTTTTTTTTTTTTTTTT+TGG | + | tig0017348:12016-12035 | Msa1361110:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAAAACAA+AGG | - | tig0017348:12016-12035 | Msa1361110:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAACAAA+GGG | - | tig0017348:12017-12036 | Msa1361110:intron | 5.0% |
| !!! | AAAAATTCTAATTTTTTTTT+GGG | + | tig0017348:12536-12555 | Msa1361110:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+TGG | + | tig0017348:12537-12556 | Msa1361110:intergenic | 5.0% |
| !!! | ATGAATTTATATATTTTTTA+TGG | - | tig0017348:12576-12595 | Msa1361110:intron | 5.0% |
| !!! | AATTTTCTAATATTTATTTA+AGG | + | tig0017348:13751-13770 | Msa1361110:intergenic | 5.0% |
| ATGGAAAAAGAGGGGGTCGA+AGG | + | tig0017348:5338-5357 | Msa1361110:intergenic | 50.0% | |
| TATGCAGTGCGGTTCGTTCA+TGG | - | tig0017348:6342-6361 | Msa1361110:intron | 50.0% | |
| TCTGCCTAAGCCAGCAATTG+TGG | - | tig0017348:6742-6761 | Msa1361110:intron | 50.0% | |
| !! | ACCTCCACAATTGCTGGCTT+AGG | + | tig0017348:6749-6768 | Msa1361110:intergenic | 50.0% |
| GGGTCATGCTAACCAGACAT+TGG | + | tig0017348:7328-7347 | Msa1361110:intergenic | 50.0% | |
| GGAAGGCCATGGACACTTAT+TGG | - | tig0017348:7701-7720 | Msa1361110:intron | 50.0% | |
| TTCTTTAACCAGTGCCCCAG+AGG | + | tig0017348:7965-7984 | Msa1361110:intergenic | 50.0% | |
| TTGTCTTCTTCACCAGTGCC+TGG | - | tig0017348:8086-8105 | Msa1361110:intron | 50.0% | |
| AAATGCTAACCGGTACCTCC+AGG | + | tig0017348:8107-8126 | Msa1361110:intergenic | 50.0% | |
| TTTGTGTGCACCGTGATCGT+TGG | - | tig0017348:8187-8206 | Msa1361110:intron | 50.0% | |
| GGATCTTAGCACAGCTAGCT+TGG | - | tig0017348:8208-8227 | Msa1361110:intron | 50.0% | |
| ! | GAAGAAAGGTACGAGAGAGG+AGG | + | tig0017348:8676-8695 | Msa1361110:intergenic | 50.0% |
| ! | GGAGAAGAAAGGTACGAGAG+AGG | + | tig0017348:8679-8698 | Msa1361110:intergenic | 50.0% |
| TGACGATTGAGCGCAATCAG+CGG | + | tig0017348:8753-8772 | Msa1361110:intergenic | 50.0% | |
| GCCCAATTAATCTTCCTCGC+AGG | + | tig0017348:8942-8961 | Msa1361110:intergenic | 50.0% | |
| CTCTCGTATCCATTCACCCA+TGG | + | tig0017348:8967-8986 | Msa1361110:intergenic | 50.0% | |
| GGGTGAATGGATACGAGAGA+AGG | - | tig0017348:8968-8987 | Msa1361110:intron | 50.0% | |
| TGTGGTAAATGGAGCATGCC+TGG | - | tig0017348:9134-9153 | Msa1361110:intron | 50.0% | |
| ! | AGAGTAGTGGAGAAGAGTCC+AGG | + | tig0017348:9155-9174 | Msa1361110:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | tig0017348:9360-9379 | Msa1361110:intron | 50.0% | |
| TGATCATGTTCGAGCTGGAC+AGG | - | tig0017348:9869-9888 | Msa1361110:intron | 50.0% | |
| GACAATGCAACCTCAAGTGC+GGG | - | tig0017348:9922-9941 | Msa1361110:intron | 50.0% | |
| CAGAAAGGGGGCAAAAAGGT+AGG | + | tig0017348:10227-10246 | Msa1361110:intergenic | 50.0% | |
| ! | CTACCTTTTTGCCCCCTTTC+TGG | - | tig0017348:10225-10244 | Msa1361110:intron | 50.0% |
| !! | TTGCCCCCTTTCTGGTTAGA+TGG | - | tig0017348:10233-10252 | Msa1361110:intron | 50.0% |
| GGTCCATCTAACCAGAAAGG+GGG | + | tig0017348:10239-10258 | Msa1361110:intergenic | 50.0% | |
| GGGAAATGCGGCAAAAGATG+GGG | + | tig0017348:10352-10371 | Msa1361110:intergenic | 50.0% | |
| GGGGAAATGCGGCAAAAGAT+GGG | + | tig0017348:10353-10372 | Msa1361110:intergenic | 50.0% | |
| AGGGGAAATGCGGCAAAAGA+TGG | + | tig0017348:10354-10373 | Msa1361110:intergenic | 50.0% | |
| CATTTATATAGTCCGCCGGC+AGG | + | tig0017348:10879-10898 | Msa1361110:intergenic | 50.0% | |
| ! | CTCGTTGTTTCGTGGGAAGA+AGG | + | tig0017348:11950-11969 | Msa1361110:intergenic | 50.0% |
| TTTGGTCAATTGGGGTGGGT+GGG | + | tig0017348:12049-12068 | Msa1361110:intergenic | 50.0% | |
| ! | TTTTGGTCAATTGGGGTGGG+TGG | + | tig0017348:12050-12069 | Msa1361110:intergenic | 50.0% |
| TAGAAGGTCTCATGCACGTG+AGG | - | tig0017348:14502-14521 | Msa1361110:CDS | 50.0% | |
| AGGTCTCATACACGTGAGGC+TGG | - | tig0017348:4655-4674 | Msa1361110:CDS | 55.0% | |
| GGAATGACAAAGGGGACGGA+CGG | - | tig0017348:5832-5851 | Msa1361110:intron | 55.0% | |
| GACGGAAGGAACCCTCTGAA+TGG | + | tig0017348:6570-6589 | Msa1361110:intergenic | 55.0% | |
| GCCTAAGCCAGCAATTGTGG+AGG | - | tig0017348:6745-6764 | Msa1361110:intron | 55.0% | |
| TCATGCTAACCGGTGCCTCT+GGG | - | tig0017348:7947-7966 | Msa1361110:intron | 55.0% | |
| TCTTCTTCACCAGTGCCTGG+AGG | - | tig0017348:8089-8108 | Msa1361110:intron | 55.0% | |
| TGGAGCATACCAGGACTCAG+TGG | + | tig0017348:8536-8555 | Msa1361110:intergenic | 55.0% | |
| TGAGCGCAATCAGCGGATCT+TGG | + | tig0017348:8746-8765 | Msa1361110:intergenic | 55.0% | |
| CCTCGCAGGATTCAAGTCGT+AGG | + | tig0017348:8928-8947 | Msa1361110:intergenic | 55.0% | |
| CCTACGACTTGAATCCTGCG+AGG | - | tig0017348:8925-8944 | Msa1361110:intron | 55.0% | |
| ATTGGGCAGCCATGGGTGAA+TGG | - | tig0017348:8955-8974 | Msa1361110:intron | 55.0% | |
| TGGGGTATATGACGCGACAG+TGG | + | tig0017348:9586-9605 | Msa1361110:intergenic | 55.0% | |
| ATGACAAAGGGGACGGACGG+TGG | - | tig0017348:5835-5854 | Msa1361110:intron | 60.0% | |
| GTCATGCTAACCGGTGCCTC+TGG | - | tig0017348:7946-7965 | Msa1361110:intron | 60.0% | |
| CATGCTAACCGGTGCCTCTG+GGG | - | tig0017348:7948-7967 | Msa1361110:intron | 60.0% | |
| ! | TCACCAGTGCCTGGAGGTAC+CGG | - | tig0017348:8095-8114 | Msa1361110:intron | 60.0% |
| TAACCGGTACCTCCAGGCAC+TGG | + | tig0017348:8101-8120 | Msa1361110:intergenic | 60.0% | |
| CGGATCTTGGCGGTGATGAG+AGG | + | tig0017348:8733-8752 | Msa1361110:intergenic | 60.0% | |
| GCGCAATCAGCGGATCTTGG+CGG | + | tig0017348:8743-8762 | Msa1361110:intergenic | 60.0% | |
| GAACCATTTGACCCTGCCGG+CGG | - | tig0017348:10864-10883 | Msa1361110:intron | 60.0% | |
| AGGTCTCATGCACGTGAGGC+TGG | - | tig0017348:14506-14525 | Msa1361110:CDS | 60.0% | |
| AAGGGGACGGACGGTGGAGA+TGG | - | tig0017348:5841-5860 | Msa1361110:intron | 65.0% | |
| ! | AACCAGTGCCCCAGAGGCAC+CGG | + | tig0017348:7959-7978 | Msa1361110:intergenic | 65.0% |
| AGTCCGCCGGCAGGGTCAAA+TGG | + | tig0017348:10870-10889 | Msa1361110:intergenic | 65.0% | |
| !! | AACCGGTGCCTCTGGGGCAC+TGG | - | tig0017348:7954-7973 | Msa1361110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017348 | gene | 4248 | 14598 | 4248 | ID=Msa1361110;Name=Msa1361110 |
| tig0017348 | mRNA | 4248 | 14598 | 4248 | ID=Msa1361110-mRNA-1;Parent=Msa1361110;Name=Msa1361110-mRNA-1;_AED=0.06;_eAED=0.13;_QI=65|0|0|1|0|0|3|0|284 |
| tig0017348 | exon | 14360 | 14598 | 14360 | ID=Msa1361110-mRNA-1:exon:12276;Parent=Msa1361110-mRNA-1 |
| tig0017348 | exon | 14152 | 14338 | 14152 | ID=Msa1361110-mRNA-1:exon:12275;Parent=Msa1361110-mRNA-1 |
| tig0017348 | exon | 4248 | 4738 | 4248 | ID=Msa1361110-mRNA-1:exon:12274;Parent=Msa1361110-mRNA-1 |
| tig0017348 | five_prime_UTR | 14534 | 14598 | 14534 | ID=Msa1361110-mRNA-1:five_prime_utr;Parent=Msa1361110-mRNA-1 |
| tig0017348 | CDS | 14360 | 14533 | 14360 | ID=Msa1361110-mRNA-1:cds;Parent=Msa1361110-mRNA-1 |
| tig0017348 | CDS | 14152 | 14338 | 14152 | ID=Msa1361110-mRNA-1:cds;Parent=Msa1361110-mRNA-1 |
| tig0017348 | CDS | 4248 | 4738 | 4248 | ID=Msa1361110-mRNA-1:cds;Parent=Msa1361110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
