AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010150 MtrunA17_Chr1g0159211 95.755 212 8 1 1 211 1 212 1.61e-144 409
Msa0010150 MtrunA17_Chr1g0159211 73.077 208 21 4 212 385 3 209 4.08e-92 276
Msa0010150 MtrunA17_Chr1g0159221 91.509 212 17 1 1 211 1 212 5.01e-136 387
Msa0010150 MtrunA17_Chr1g0159221 80.097 206 8 2 213 385 4 209 2.27e-107 314
Msa0010150 MtrunA17_Chr3g0126121 68.116 207 65 1 6 211 5 211 4.76e-99 293
Msa0010150 MtrunA17_Chr3g0126121 55.446 202 56 3 218 385 7 208 2.17e-65 207
Msa0010150 MtrunA17_Chr1g0187451 33.146 178 115 1 35 212 19 192 2.70e-32 120
Msa0010150 MtrunA17_Chr1g0187451 25.862 174 92 3 245 385 19 188 1.29e-13 69.3
Msa0010150 MtrunA17_Chr1g0166501 30.899 178 119 1 35 212 19 192 1.37e-28 110
Msa0010150 MtrunA17_Chr1g0166501 24.500 200 124 4 198 385 4 188 1.34e-11 63.5
Msa0010150 MtrunA17_Chr1g0187431 36.634 101 64 0 62 162 1 101 5.21e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010150 AT1G21360.1 52.113 213 99 2 1 211 1 212 8.71e-71 221
Msa0010150 AT1G21360.1 40.580 207 87 4 214 385 4 209 1.22e-39 141
Msa0010150 AT3G21260.3 50.450 222 99 2 1 211 1 222 2.05e-62 200
Msa0010150 AT3G21260.3 40.107 187 74 3 219 367 15 201 3.09e-32 121
Msa0010150 AT1G21360.3 55.422 166 71 2 1 164 1 165 8.88e-56 182
Msa0010150 AT1G21360.3 39.264 163 63 4 214 341 4 165 9.90e-25 100
Msa0010150 AT1G21360.2 51.333 150 73 0 62 211 1 150 4.73e-48 160
Msa0010150 AT1G21360.2 44.118 136 64 1 262 385 12 147 4.11e-30 114
Msa0010150 AT3G21260.2 53.285 137 64 0 75 211 2 138 1.17e-39 138
Msa0010150 AT3G21260.2 49.138 116 47 1 264 367 2 117 2.10e-28 108
Msa0010150 AT3G21260.1 52.632 133 63 0 79 211 1 133 5.08e-38 134
Msa0010150 AT3G21260.1 48.214 112 46 1 268 367 1 112 8.35e-27 104
Msa0010150 AT2G33470.2 33.918 171 109 1 42 212 26 192 5.88e-30 114
Msa0010150 AT2G33470.2 27.381 168 85 3 251 385 25 188 5.48e-13 67.8
Msa0010150 AT2G33470.1 33.918 171 109 1 42 212 26 192 5.88e-30 114
Msa0010150 AT2G33470.1 27.381 168 85 3 251 385 25 188 5.48e-13 67.8

Find 67 sgRNAs with CRISPR-Local

Find 651 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTTGAAATATTGAAAT+TGG 0.200840 1_1:+15175358 Msa0010150:CDS
TTTCCTCTCTATATATTATT+TGG 0.201233 1_1:+15173761 Msa0010150:CDS
TTTGGTAGAAATATTGAAAA+TGG 0.207243 1_1:+15182659 Msa0010150:CDS
CTAATAATTACAGATAAAAT+AGG 0.259826 1_1:+15173919 Msa0010150:intron
TCCAACAACGAATCTAAATT+TGG 0.270826 1_1:+15182641 Msa0010150:CDS
TAAGCAGAAAATGCAAATAT+TGG 0.279728 1_1:+15176040 Msa0010150:CDS
TAAGCAGAAAATGCAGATAT+TGG 0.283442 1_1:+15184857 Msa0010150:CDS
TATAGAGAGGAAAGGCTTAA+TGG 0.287772 1_1:-15173751 None:intergenic
AAAAGATCCTGAAAAGAAAA+TGG 0.298748 1_1:+15175622 Msa0010150:CDS
CAATGATCCTGAAAAGAAAA+TGG 0.314820 1_1:+15184232 Msa0010150:CDS
GTTGTGATAGTTAAACCTTC+TGG 0.315301 1_1:+15173702 Msa0010150:CDS
GAGTGGTAAGAGAGAAATAA+TGG 0.318341 1_1:+15181449 Msa0010150:intron
TATTTGGTTCTACAAGTTCT+TGG 0.334643 1_1:+15173777 Msa0010150:CDS
TGTCATTGAAGAACTTTCTA+TGG 0.343601 1_1:+15181494 Msa0010150:CDS
ATAGAGAGGAAAGGCTTAAT+GGG 0.344250 1_1:-15173750 None:intergenic
GAAGAGTGCAAAGAGAGAAA+TGG 0.385943 1_1:+15173635 Msa0010150:CDS
GCTGCAGTAAAGCCTTTGTT+TGG 0.386553 1_1:+15175414 Msa0010150:CDS
ACTAAATTTAGATTTGTTGT+TGG 0.392467 1_1:-15175341 None:intergenic
ACCAAATTTAGATTCGTTGT+TGG 0.393140 1_1:-15182642 None:intergenic
TGGGGATATGAGCAGCTTCA+TGG 0.400821 1_1:-15181545 None:intergenic
GGTGGCTCTAAGATTAGTTC+CGG 0.420560 1_1:+15175962 Msa0010150:intron
GGATTTCATCAACTGCTGTC+AGG 0.429044 1_1:+15184306 Msa0010150:CDS
TGTCTCAAAACAGCCATTGT+TGG 0.436087 1_1:-15173943 None:intergenic
TAATAATTACAGATAAAATA+GGG 0.451699 1_1:+15173920 Msa0010150:intron
AACAGAAGGCAATGCAAAGA+AGG 0.452284 1_1:+15175385 Msa0010150:CDS
CATTAAAACCATGGCATGGA+TGG 0.453685 1_1:+15175675 Msa0010150:CDS
CATTAAAACCGTGGCATGGA+TGG 0.458818 1_1:+15184285 Msa0010150:CDS
AACGGAAGGCATTGCAAAGA+AGG 0.467244 1_1:+15182686 Msa0010150:CDS
GGAGCTATTATGCAGGACCT+TGG 0.493446 1_1:+15184178 Msa0010150:intron
GGTCTTCATCTTCAGTCATA+AGG 0.495479 1_1:-15184824 None:intergenic
CAGTGAATATCTTCAAGAAA+AGG 0.501677 1_1:-15184894 None:intergenic
TGAAAAGAAAATGGAGAAAG+TGG 0.505804 1_1:+15184241 Msa0010150:CDS
ATAGAGAGAAAAGGCTTGGT+GGG 0.506837 1_1:-15181564 None:intergenic
GGATAGTATTTGTAATAATG+AGG 0.508394 1_1:-15184210 None:intergenic
CAATGGATATCCTCAAGAAA+AGG 0.520025 1_1:-15176077 None:intergenic
AAGCCTTTGTTTGGCTCACA+AGG 0.523024 1_1:+15175423 Msa0010150:CDS
GCATATATTCTGCAGGACCC+TGG 0.523277 1_1:+15175568 Msa0010150:intron
ACAACGACGAGGTGAAATCC+AGG 0.531035 1_1:-15175586 None:intergenic
GAATAACATATAGAGAGAAA+AGG 0.539202 1_1:-15181573 None:intergenic
ACATATAGAGAGAAAAGGCT+TGG 0.544110 1_1:-15181568 None:intergenic
ACAGAAGGCAATGCAAAGAA+GGG 0.552195 1_1:+15175386 Msa0010150:CDS
AATATTGAAAATGGAAGCAA+CGG 0.559253 1_1:+15182668 Msa0010150:CDS
CAAAGCTTACTAGGATACAA+TGG 0.561451 1_1:-15176094 None:intergenic
TATAGAGAGAAAAGGCTTGG+TGG 0.564749 1_1:-15181565 None:intergenic
GATTTCATCAACTGCTGTCA+GGG 0.567407 1_1:+15184307 Msa0010150:CDS
ACGGAAGGCATTGCAAAGAA+GGG 0.573082 1_1:+15182687 Msa0010150:CDS
AGATGTGTATCAAAATATCA+AGG 0.576462 1_1:+15173966 Msa0010150:CDS
GATGAAATCCATCCATGCCA+TGG 0.583812 1_1:-15175683 None:intergenic
TTGAAATTGGAAGCAACAGA+AGG 0.584098 1_1:+15175371 Msa0010150:CDS
ATGAAATTACATTAAAACCA+TGG 0.587709 1_1:+15175666 Msa0010150:CDS
TTGAAAATGGAAGCAACGGA+AGG 0.595410 1_1:+15182672 Msa0010150:CDS
TAATGAGGAGGTAAAATCCA+AGG 0.597945 1_1:-15184195 None:intergenic
GAACCAAATAATATATAGAG+AGG 0.599010 1_1:-15173764 None:intergenic
ATTACATTAAAACCATGGCA+TGG 0.602589 1_1:+15175671 Msa0010150:CDS
GATGAAATCCATCCATGCCA+CGG 0.603497 1_1:-15184293 None:intergenic
GCTACATTAAAACCGTGGCA+TGG 0.611773 1_1:+15184281 Msa0010150:CDS
AAATAATATATAGAGAGGAA+AGG 0.619843 1_1:-15173759 None:intergenic
AGATAAAATAGGGCCAACAA+TGG 0.630676 1_1:+15173930 Msa0010150:intron
TAGAGAGGAAAGGCTTAATG+GGG 0.634982 1_1:-15173749 None:intergenic
CGGAAGGCATTGCAAAGAAG+GGG 0.639295 1_1:+15182688 Msa0010150:CDS
CAGAAGGCAATGCAAAGAAG+GGG 0.645808 1_1:+15175387 Msa0010150:CDS
TCACCTTGTGAGCCAAACAA+AGG 0.647841 1_1:-15175426 None:intergenic
TAGTATTTGTAATAATGAGG+AGG 0.660461 1_1:-15184207 None:intergenic
TAGAGAGAAAAGGCTTGGTG+GGG 0.681540 1_1:-15181563 None:intergenic
CAACGACGAGGTGAAATCCA+GGG 0.691741 1_1:-15175585 None:intergenic
ATGAAGCTACATTAAAACCG+TGG 0.696283 1_1:+15184276 Msa0010150:CDS
TAGTATTTGTAACAACGACG+AGG 0.749903 1_1:-15175597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATAAATTATTTTT+TGG - chr1_1:15181218-15181237 None:intergenic 0.0%
!! TAATAATAATAATAATAATA+AGG + chr1_1:15183025-15183044 Msa0010150:intron 0.0%
!! AATAATAATAATAATAATAA+GGG + chr1_1:15183026-15183045 Msa0010150:intron 0.0%
!! TATTATTATTATTATTATTA+GGG - chr1_1:15180629-15180648 None:intergenic 0.0%
!! TTATTATTATTATTATTATT+AGG - chr1_1:15180628-15180647 None:intergenic 0.0%
!! TAATAATTACAGATAAAATA+GGG + chr1_1:15173920-15173939 Msa0010150:intron 10.0%
!! TAGATTATTAAAGATATTAA+CGG - chr1_1:15174665-15174684 None:intergenic 10.0%
!!! TTCTTTTTTCATTATAATAT+GGG + chr1_1:15175156-15175175 Msa0010150:intron 10.0%
!! TATTGAAGAAATTTATAAAT+AGG + chr1_1:15175521-15175540 Msa0010150:intron 10.0%
!! CAAAAAAAAAAAAAGATATT+TGG + chr1_1:15176601-15176620 Msa0010150:intron 10.0%
!!! AATCTTATTTAATTTATGTT+TGG - chr1_1:15176870-15176889 None:intergenic 10.0%
!!! TCAATTTTATAAGTATTTAT+AGG + chr1_1:15177399-15177418 Msa0010150:intron 10.0%
!!! TAATAAATTGCAAAAATTTT+GGG - chr1_1:15178959-15178978 None:intergenic 10.0%
!!! ATAATAAATTGCAAAAATTT+TGG - chr1_1:15178960-15178979 None:intergenic 10.0%
!! AATTTAATATAAACCATTAT+AGG + chr1_1:15180585-15180604 Msa0010150:intron 10.0%
!!! ATGTTTTAAAAAACATTATT+TGG + chr1_1:15181105-15181124 Msa0010150:intron 10.0%
!!! TTTTTTATAGATAAAATGTT+AGG + chr1_1:15181873-15181892 Msa0010150:intron 10.0%
!!! TTTTTATAGATAAAATGTTA+GGG + chr1_1:15181874-15181893 Msa0010150:intron 10.0%
!! AAAGTTATATGTTTATATAT+AGG - chr1_1:15182757-15182776 None:intergenic 10.0%
!!! TAAGAAAAATTTAAAATGAA+TGG - chr1_1:15183643-15183662 None:intergenic 10.0%
!!! TAAGAAAAATTTAAAATGAA+TGG - chr1_1:15183643-15183662 None:intergenic 10.0%
!!! AAATTAAGATATTTTTTCTT+TGG - chr1_1:15184156-15184175 None:intergenic 10.0%
!!! ACTTTATTTATTTATTTTTG+GGG - chr1_1:15184550-15184569 None:intergenic 10.0%
!! CTAATAATTACAGATAAAAT+AGG + chr1_1:15173919-15173938 Msa0010150:intron 15.0%
!! ACAAAATTATAATAAGAGAA+GGG - chr1_1:15174062-15174081 None:intergenic 15.0%
!! AACAAAATTATAATAAGAGA+AGG - chr1_1:15174063-15174082 None:intergenic 15.0%
!! ATAAATAACAATGCTTAAAA+AGG - chr1_1:15174312-15174331 None:intergenic 15.0%
!!! AACCAATAAAATTTGTTATT+TGG + chr1_1:15174372-15174391 Msa0010150:intron 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + chr1_1:15174772-15174791 Msa0010150:intron 15.0%
!! AGGTATAAAAAAATTTGTAT+AGG - chr1_1:15174922-15174941 None:intergenic 15.0%
!! TAAGAAGAAATTTAACATAA+AGG + chr1_1:15175099-15175118 Msa0010150:intron 15.0%
!! AAGAAGAAATTTAACATAAA+GGG + chr1_1:15175100-15175119 Msa0010150:intron 15.0%
!!! CTTCTTTTTTCATTATAATA+TGG + chr1_1:15175155-15175174 Msa0010150:intron 15.0%
!!! TCTTTTTTCATTATAATATG+GGG + chr1_1:15175157-15175176 Msa0010150:intron 15.0%
!! TTTAGTTGAAATATTGAAAT+TGG + chr1_1:15175358-15175377 Msa0010150:CDS 15.0%
!!! AGGTGTTATTATATTATTAT+AGG - chr1_1:15175456-15175475 None:intergenic 15.0%
!!! ATTAGAGAAGTATTATTATT+AGG - chr1_1:15175476-15175495 None:intergenic 15.0%
!! AAAAGATAAAAGTAATAATG+AGG + chr1_1:15176252-15176271 Msa0010150:intron 15.0%
!! ATTTGAAAACAAAAGATATT+TGG + chr1_1:15176571-15176590 Msa0010150:intron 15.0%
!! AACTCGTTTAAAAATTTAAA+GGG - chr1_1:15176789-15176808 None:intergenic 15.0%
!!! TTGAAAAATGCTAATTTTTT+TGG - chr1_1:15176847-15176866 None:intergenic 15.0%
!! TAAAATCAAAGGAAAAATTT+AGG + chr1_1:15177056-15177075 Msa0010150:intron 15.0%
!!! TCAAGGATTAAATATTTTTT+TGG - chr1_1:15177115-15177134 None:intergenic 15.0%
!! GAATTAAGTAAAAAAAATCA+AGG - chr1_1:15177132-15177151 None:intergenic 15.0%
!! TATAAAATTGAGTTTCAAAT+AGG - chr1_1:15177390-15177409 None:intergenic 15.0%
!! ATATTGATACTAATTCTTAA+GGG + chr1_1:15177429-15177448 Msa0010150:intron 15.0%
!!! TTTATTGATTTGAAAATTGT+TGG - chr1_1:15178066-15178085 None:intergenic 15.0%
!!! ATTTTGTTTATAATAGTAAC+CGG - chr1_1:15178599-15178618 None:intergenic 15.0%
!! TATTCATTTAATGAAGTATA+TGG + chr1_1:15178634-15178653 Msa0010150:intron 15.0%
!! AAAGTAGAATATATTGAATT+GGG - chr1_1:15179496-15179515 None:intergenic 15.0%
!! TAAAGTAGAATATATTGAAT+TGG - chr1_1:15179497-15179516 None:intergenic 15.0%
!! AATAATATATATGCCTATAA+TGG - chr1_1:15180601-15180620 None:intergenic 15.0%
!!! TTTTTCCATAATATCAAATT+AGG + chr1_1:15182211-15182230 Msa0010150:intron 15.0%
!!! AGTTCTGTTATTTAAATTTA+AGG - chr1_1:15182367-15182386 None:intergenic 15.0%
!!! TTATTTTGAGAAATTGTTTT+TGG - chr1_1:15182798-15182817 None:intergenic 15.0%
!!! TCAGTTTTTACAAAAAAAAA+TGG - chr1_1:15182999-15183018 None:intergenic 15.0%
!!! AAGTGTGATTTTATTTTTTA+GGG - chr1_1:15183103-15183122 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTTT+AGG - chr1_1:15183104-15183123 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG + chr1_1:15183260-15183279 Msa0010150:intron 15.0%
!!! AAGTGTGATTTTATTTTATA+GGG + chr1_1:15183261-15183280 Msa0010150:intron 15.0%
!! ACAAAATTGTGAATATTTAT+AGG + chr1_1:15183291-15183310 Msa0010150:intron 15.0%
!! CAAAATTGTGAATATTTATA+GGG + chr1_1:15183292-15183311 Msa0010150:intron 15.0%
!! AGAAAAAATATCTTAATTTC+AGG + chr1_1:15184157-15184176 Msa0010150:intron 15.0%
!!! AATATCGTATATCTTTTTTT+AGG + chr1_1:15184407-15184426 Msa0010150:intron 15.0%
!!! ATATCGTATATCTTTTTTTA+GGG + chr1_1:15184408-15184427 Msa0010150:intron 15.0%
!!! CTTTATTTATTTATTTTTGG+GGG - chr1_1:15184549-15184568 None:intergenic 15.0%
!!! TTTTTTTGTGATTGAAATTT+AGG + chr1_1:15184653-15184672 Msa0010150:intron 15.0%
!!! TTTTTTGTGATTGAAATTTA+GGG + chr1_1:15184654-15184673 Msa0010150:intron 15.0%
!! AAATAATATATAGAGAGGAA+AGG - chr1_1:15173762-15173781 None:intergenic 20.0%
!! TTTCCTCTCTATATATTATT+TGG + chr1_1:15173761-15173780 Msa0010150:CDS 20.0%
!!! TAGATGTTTTGTTTTTTTTG+AGG - chr1_1:15173887-15173906 None:intergenic 20.0%
!! ATGAATGATGTTAGTTATTA+GGG + chr1_1:15174110-15174129 Msa0010150:intron 20.0%
!! CTATTAATCTAATAACTACT+TGG - chr1_1:15174218-15174237 None:intergenic 20.0%
!! TTCTCCAATAGTTAAAATTA+TGG + chr1_1:15174267-15174286 Msa0010150:intron 20.0%
!!! TCAACCATAATTTTAACTAT+TGG - chr1_1:15174274-15174293 None:intergenic 20.0%
!! AAGCTACTCAAATTATTAAA+AGG - chr1_1:15174505-15174524 None:intergenic 20.0%
!!! ATACGAAATAGAATGTTTTT+AGG + chr1_1:15174540-15174559 Msa0010150:intron 20.0%
!!! TACGAAATAGAATGTTTTTA+GGG + chr1_1:15174541-15174560 Msa0010150:intron 20.0%
!!! ACTAAATTTAGATTTGTTGT+TGG - chr1_1:15175344-15175363 None:intergenic 20.0%
!! AGGTATCATCTTATAATTTA+TGG + chr1_1:15175541-15175560 Msa0010150:intron 20.0%
!! ATGAAATTACATTAAAACCA+TGG + chr1_1:15175666-15175685 Msa0010150:CDS 20.0%
!! TTTGCAAATTTACATATGAT+AGG + chr1_1:15175911-15175930 Msa0010150:intron 20.0%
!! TGAAACGCAATATATATTTA+GGG - chr1_1:15175942-15175961 None:intergenic 20.0%
!! CAAAAAAATATACACACATA+AGG - chr1_1:15176164-15176183 None:intergenic 20.0%
!!! ATGTGTGTATATTTTTTTGA+AGG + chr1_1:15176165-15176184 Msa0010150:intron 20.0%
!!! CAAAGATTTTATTCAATGAA+AGG + chr1_1:15176303-15176322 Msa0010150:intron 20.0%
!! AAAGATATTTGGTTAAAATG+AGG + chr1_1:15176612-15176631 Msa0010150:intron 20.0%
!!! AAAAACTTTTGAGGAATAAA+AGG - chr1_1:15176723-15176742 None:intergenic 20.0%
!! GAACTCGTTTAAAAATTTAA+AGG - chr1_1:15176790-15176809 None:intergenic 20.0%
!!! ATTTAAGCACCAATTTATTT+TGG + chr1_1:15176919-15176938 Msa0010150:intron 20.0%
!!! TTTAAGCACCAATTTATTTT+GGG + chr1_1:15176920-15176939 Msa0010150:intron 20.0%
!! ACGAAAAGATGATATTTATA+AGG + chr1_1:15177088-15177107 Msa0010150:intron 20.0%
!! CATATTGATACTAATTCTTA+AGG + chr1_1:15177428-15177447 Msa0010150:intron 20.0%
!! TATTGATACTAATTCTTAAG+GGG + chr1_1:15177430-15177449 Msa0010150:intron 20.0%
!!! TTTTCAAATCAATAAAGTAG+TGG + chr1_1:15178070-15178089 Msa0010150:intron 20.0%
!! AGTTAGATGTTAATTGTTTA+CGG + chr1_1:15178463-15178482 Msa0010150:intron 20.0%
!! TATATAAACCCCTATAAATT+TGG + chr1_1:15179000-15179019 Msa0010150:intron 20.0%
!! AAGAAATTGCCAAATTTATA+GGG - chr1_1:15179012-15179031 None:intergenic 20.0%
!! AAAGAAATTGCCAAATTTAT+AGG - chr1_1:15179013-15179032 None:intergenic 20.0%
!! AAAATTTGCAACATATTTGT+AGG - chr1_1:15179076-15179095 None:intergenic 20.0%
!! TATAAAATGCAATATACTCA+CGG - chr1_1:15179313-15179332 None:intergenic 20.0%
!!! TATTGCATTGTTTTCTATTT+TGG + chr1_1:15179719-15179738 Msa0010150:intron 20.0%
!!! CTTTTATAAATTGGTGTTTA+TGG + chr1_1:15179998-15180017 Msa0010150:intron 20.0%
!!! TTTCTACCATATTATGTTTT+AGG - chr1_1:15180812-15180831 None:intergenic 20.0%
!! TATTCAATTATTATGCAAGT+GGG - chr1_1:15180913-15180932 None:intergenic 20.0%
!! ATATTCAATTATTATGCAAG+TGG - chr1_1:15180914-15180933 None:intergenic 20.0%
!! TTGGATAAAGAATAATTACA+AGG + chr1_1:15181124-15181143 Msa0010150:intron 20.0%
!! TAAAAAAATGCATTAAGAGA+AGG - chr1_1:15181860-15181879 None:intergenic 20.0%
!! AGTATATAATGTAAAGAGAA+GGG - chr1_1:15182477-15182496 None:intergenic 20.0%
!! TAGTATATAATGTAAAGAGA+AGG - chr1_1:15182478-15182497 None:intergenic 20.0%
!! TCTCTTTACATTATATACTA+TGG + chr1_1:15182478-15182497 Msa0010150:intron 20.0%
!! CTCTTTACATTATATACTAT+GGG + chr1_1:15182479-15182498 Msa0010150:intron 20.0%
!! TCTTTACATTATATACTATG+GGG + chr1_1:15182480-15182499 Msa0010150:intron 20.0%
!! TTTAATACACAACTAATCAT+TGG - chr1_1:15175278-15175297 None:intergenic 20.0%
!! TTTGGTAGAAATATTGAAAA+TGG + chr1_1:15182659-15182678 Msa0010150:CDS 20.0%
!!! AGAAATTGTTTTTGGTTAAT+CGG - chr1_1:15182790-15182809 None:intergenic 20.0%
!!! ATGTCATTTTATGTTTTCAA+TGG + chr1_1:15182818-15182837 Msa0010150:intron 20.0%
!!! TGTCATTTTATGTTTTCAAT+GGG + chr1_1:15182819-15182838 Msa0010150:intron 20.0%
!! TATCATGTGTATGTTTAATA+TGG + chr1_1:15182941-15182960 Msa0010150:intron 20.0%
!!! AATTTTTCCATCAACATTTT+TGG - chr1_1:15183164-15183183 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG + chr1_1:15183168-15183187 Msa0010150:intron 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG + chr1_1:15183169-15183188 Msa0010150:intron 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG + chr1_1:15183168-15183187 Msa0010150:intron 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG + chr1_1:15183169-15183188 Msa0010150:intron 20.0%
!!! TGATGATGGAAAATTTTATA+AGG + chr1_1:15183232-15183251 Msa0010150:intron 20.0%
!! TGAAAATTACCAAAAATATG+AGG + chr1_1:15183470-15183489 Msa0010150:intron 20.0%
!! GAAAATTACCAAAAATATGA+GGG + chr1_1:15183471-15183490 Msa0010150:intron 20.0%
!! AAATGAACACATAATATAGA+AGG + chr1_1:15184096-15184115 Msa0010150:intron 20.0%
!! AATGAACACATAATATAGAA+GGG + chr1_1:15184097-15184116 Msa0010150:intron 20.0%
!!! CTTTTAGTGAAGAAATTAAA+AGG + chr1_1:15184730-15184749 Msa0010150:intron 20.0%
!!! ATTTTCTGGAACTAATTTTA+GGG - chr1_1:15184787-15184806 None:intergenic 20.0%
!!! TATTTTCTGGAACTAATTTT+AGG - chr1_1:15184788-15184807 None:intergenic 20.0%
!!! TCAATGAATGTTTTATTTTC+TGG - chr1_1:15184801-15184820 None:intergenic 20.0%
!! TTTTATTGAAGAGCTTTCTA+TGG + chr1_1:15173680-15173699 Msa0010150:CDS 25.0%
! GAACCAAATAATATATAGAG+AGG - chr1_1:15173767-15173786 None:intergenic 25.0%
! AGATGTGTATCAAAATATCA+AGG + chr1_1:15173966-15173985 Msa0010150:CDS 25.0%
! TAATAAGAGAAGGGTTAAAT+GGG - chr1_1:15174053-15174072 None:intergenic 25.0%
! ATAATAAGAGAAGGGTTAAA+TGG - chr1_1:15174054-15174073 None:intergenic 25.0%
! GATGAATGATGTTAGTTATT+AGG + chr1_1:15174109-15174128 Msa0010150:intron 25.0%
! ATAGACATCATAACTACAAT+TGG + chr1_1:15174234-15174253 Msa0010150:intron 25.0%
! TAGACATCATAACTACAATT+GGG + chr1_1:15174235-15174254 Msa0010150:intron 25.0%
!! CGCCAAATAACAAATTTTAT+TGG - chr1_1:15174377-15174396 None:intergenic 25.0%
! ATAGTGCATATTGCAAAAAT+TGG + chr1_1:15174813-15174832 Msa0010150:intron 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG + chr1_1:15174831-15174850 Msa0010150:intron 25.0%
! AATCTACAAACTTAGATCAA+TGG - chr1_1:15175024-15175043 None:intergenic 25.0%
! TAACATAAAGGGTTAACTTA+AGG + chr1_1:15175111-15175130 Msa0010150:intron 25.0%
! AACATAAAGGGTTAACTTAA+GGG + chr1_1:15175112-15175131 Msa0010150:intron 25.0%
! TAACTTAAGGGTTATAAGTT+AGG + chr1_1:15175124-15175143 Msa0010150:intron 25.0%
! AAAAGATCCTGAAAAGAAAA+TGG + chr1_1:15175622-15175641 Msa0010150:CDS 25.0%
! TAGTATTTCATGCTATTAGA+TGG + chr1_1:15175759-15175778 Msa0010150:intron 25.0%
! CTGAAACGCAATATATATTT+AGG - chr1_1:15175943-15175962 None:intergenic 25.0%
! CTAAATATATATTGCGTTTC+AGG + chr1_1:15175941-15175960 Msa0010150:intron 25.0%
!! TCAATGAATGTTTTACTTTC+CGG - chr1_1:15175984-15176003 None:intergenic 25.0%
! TAAGCAGAAAATGCAAATAT+TGG + chr1_1:15176040-15176059 Msa0010150:CDS 25.0%
! ATTGATAAACAAAGCTTACT+AGG - chr1_1:15176106-15176125 None:intergenic 25.0%
!!! AGTAAGCTTTGTTTATCAAT+TGG + chr1_1:15176106-15176125 Msa0010150:intron 25.0%
! GGTAAAGTTTGCAATATTTA+GGG - chr1_1:15176143-15176162 None:intergenic 25.0%
! AGGTAAAGTTTGCAATATTT+AGG - chr1_1:15176144-15176163 None:intergenic 25.0%
! AAAACAAATACACACACATA+AGG - chr1_1:15176193-15176212 None:intergenic 25.0%
! TTTGCAGAGATTATATAACT+TGG + chr1_1:15176210-15176229 Msa0010150:intron 25.0%
!! AACAACACAAATCAAGTTTT+TGG + chr1_1:15176496-15176515 Msa0010150:intron 25.0%
!!! ATGAGGTTGAATTGATTTTT+AGG + chr1_1:15176629-15176648 Msa0010150:intron 25.0%
! AAAAGGCAAAGAAATTGTTT+AGG - chr1_1:15176706-15176725 None:intergenic 25.0%
!! AAAAGTATGGACAAAAAATG+TGG - chr1_1:15176749-15176768 None:intergenic 25.0%
!!! TTTTGTCCATACTTTTAAGT+TGG + chr1_1:15176753-15176772 Msa0010150:intron 25.0%
!! AAAAATTTAAAGGGTACACA+TGG - chr1_1:15176780-15176799 None:intergenic 25.0%
! GAATATCTCCCAAAATAAAT+TGG - chr1_1:15176931-15176950 None:intergenic 25.0%
!!! TTTTAGAGGACTAAAATCAA+AGG + chr1_1:15177045-15177064 Msa0010150:intron 25.0%
! ATCAAAGGAAAAATTTAGGA+AGG + chr1_1:15177060-15177079 Msa0010150:intron 25.0%
! TAAAGCTGAGTATGAAATAT+AGG - chr1_1:15177361-15177380 None:intergenic 25.0%
! ATATTTCATACTCAGCTTTA+TGG + chr1_1:15177361-15177380 Msa0010150:intron 25.0%
!! TATTTCATACTCAGCTTTAT+GGG + chr1_1:15177362-15177381 Msa0010150:intron 25.0%
! AAGTTATGTGATAACTGATA+CGG - chr1_1:15177704-15177723 None:intergenic 25.0%
! ACAAAAAATTGTTGTGTACT+CGG + chr1_1:15178171-15178190 Msa0010150:intron 25.0%
!!! TCCTTTCTTACTTTTAAAGA+AGG + chr1_1:15178402-15178421 Msa0010150:intron 25.0%
!! TCCTTCTTTAAAAGTAAGAA+AGG - chr1_1:15178406-15178425 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG - chr1_1:15178673-15178692 None:intergenic 25.0%
!!! TGTATTGACTAATCATACAA+GGG + chr1_1:15178756-15178775 Msa0010150:intron 25.0%
!! TATTTATGGTGGTGTTTATT+GGG - chr1_1:15178847-15178866 None:intergenic 25.0%
!! ATATTTATGGTGGTGTTTAT+TGG - chr1_1:15178848-15178867 None:intergenic 25.0%
! GGTTTATATAAGAAATTCAG+AGG - chr1_1:15178990-15179009 None:intergenic 25.0%
! AGAAATTGCCAAATTTATAG+GGG - chr1_1:15179011-15179030 None:intergenic 25.0%
! GTTGTATTGAAAACTGAAAT+GGG - chr1_1:15179422-15179441 None:intergenic 25.0%
! TGTTGTATTGAAAACTGAAA+TGG - chr1_1:15179423-15179442 None:intergenic 25.0%
!! TTTTCTTAATCTGTGTGAAA+AGG + chr1_1:15179599-15179618 Msa0010150:intron 25.0%
! TAAACTAGCTCAGTTAAATT+GGG + chr1_1:15179622-15179641 Msa0010150:intron 25.0%
!! ACTACATTCAAAAAGTGTAT+AGG + chr1_1:15179745-15179764 Msa0010150:intron 25.0%
! TAAACTGATTGAAAACTTGT+GGG + chr1_1:15179868-15179887 Msa0010150:intron 25.0%
!! GCAAAGGAACTTTTATAAAT+TGG + chr1_1:15179989-15180008 Msa0010150:intron 25.0%
! GTTAATTCTTATATGTAGTG+TGG - chr1_1:15180034-15180053 None:intergenic 25.0%
! TTGGAGTTTAATGTAACAAT+GGG + chr1_1:15180085-15180104 Msa0010150:intron 25.0%
!!! TAGACATTTTAACATCAACA+CGG - chr1_1:15180131-15180150 None:intergenic 25.0%
! AACTATACTAACCAATTATC+AGG - chr1_1:15180313-15180332 None:intergenic 25.0%
! AATTGGTTAGTATAGTTCAA+AGG + chr1_1:15180316-15180335 Msa0010150:intron 25.0%
! ATTGGTTAGTATAGTTCAAA+GGG + chr1_1:15180317-15180336 Msa0010150:intron 25.0%
! AAATTTCTTCCTATATCATG+GGG - chr1_1:15180406-15180425 None:intergenic 25.0%
! CAAATTTCTTCCTATATCAT+GGG - chr1_1:15180407-15180426 None:intergenic 25.0%
! TCAAATTTCTTCCTATATCA+TGG - chr1_1:15180408-15180427 None:intergenic 25.0%
! GACATACCTAAAACATAATA+TGG + chr1_1:15180803-15180822 Msa0010150:intron 25.0%
! AGAGTTTAGATAAGTACAAA+TGG + chr1_1:15180856-15180875 Msa0010150:intron 25.0%
! ATTCAATTATTATGCAAGTG+GGG - chr1_1:15180912-15180931 None:intergenic 25.0%
! CATGTCTAAAAGATTATAGT+AGG - chr1_1:15181042-15181061 None:intergenic 25.0%
! TAGACATGTCAATTTCAATA+TGG + chr1_1:15181054-15181073 Msa0010150:intron 25.0%
! TAAGTAGATAAAATCCATGT+AGG - chr1_1:15181081-15181100 None:intergenic 25.0%
!!! GATTTCAAGTTTCTTCTTTA+AGG - chr1_1:15181340-15181359 None:intergenic 25.0%
! GAATAACATATAGAGAGAAA+AGG - chr1_1:15181576-15181595 None:intergenic 25.0%
! TACGTGTAAACAGAAAAAAT+TGG + chr1_1:15181707-15181726 Msa0010150:intron 25.0%
! ACGTGTAAACAGAAAAAATT+GGG + chr1_1:15181708-15181727 Msa0010150:intron 25.0%
! AGATGTGTATCAAAATATCA+AGG + chr1_1:15173966-15173985 Msa0010150:CDS 25.0%
! TGAATTGAAAGATTTAGCTA+TGG - chr1_1:15181792-15181811 None:intergenic 25.0%
! ATTAAGAGAAGGTTAAGTAA+GGG - chr1_1:15181849-15181868 None:intergenic 25.0%
! TATGTTAACCCTTAGATTAT+CGG + chr1_1:15181996-15182015 Msa0010150:intron 25.0%
!! AACTTTGGTAATTTGAAGTT+AGG + chr1_1:15182027-15182046 Msa0010150:intron 25.0%
!! ATATTTTATGAGACCATACT+TGG - chr1_1:15182060-15182079 None:intergenic 25.0%
!!! AGAACTCAAGTTCAATTTTT+TGG - chr1_1:15182091-15182110 None:intergenic 25.0%
! ATAGGCCTAATTTGATATTA+TGG - chr1_1:15182219-15182238 None:intergenic 25.0%
! TCTACAAACTTATAGATCAT+TGG - chr1_1:15182337-15182356 None:intergenic 25.0%
! GTTAGGTGGTTAATAAATTA+AGG + chr1_1:15182447-15182466 Msa0010150:intron 25.0%
! GTATATAATGTAAAGAGAAG+GGG - chr1_1:15182476-15182495 None:intergenic 25.0%
! AATATTGAAAATGGAAGCAA+CGG + chr1_1:15182668-15182687 Msa0010150:CDS 25.0%
!!! GTCATTTTATGTTTTCAATG+GGG + chr1_1:15182820-15182839 Msa0010150:intron 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr1_1:15183136-15183155 Msa0010150:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr1_1:15183137-15183156 Msa0010150:intron 25.0%
! AAAGTGTAATAATTGATGTG+AGG - chr1_1:15183719-15183738 None:intergenic 25.0%
!!! TGGACTAGTAAAATTCTATT+TGG - chr1_1:15183839-15183858 None:intergenic 25.0%
!! TCTTTGTTTGATGAATAGAA+TGG - chr1_1:15183859-15183878 None:intergenic 25.0%
! ACATAATATAGAAGGGTTAA+GGG + chr1_1:15184104-15184123 Msa0010150:intron 25.0%
! TAGTATTTGTAATAATGAGG+AGG - chr1_1:15184210-15184229 None:intergenic 25.0%
! GGATAGTATTTGTAATAATG+AGG - chr1_1:15184213-15184232 None:intergenic 25.0%
! AAGGTGTGAACAAATATAAT+TGG + chr1_1:15184749-15184768 Msa0010150:intron 25.0%
!! TATTTGGTTCTACAAGTTCT+TGG + chr1_1:15173777-15173796 Msa0010150:CDS 30.0%
!! TTGTTATTTGGCGTAAATCA+AGG + chr1_1:15174384-15174403 Msa0010150:intron 30.0%
! TGTTATTTGGCGTAAATCAA+GGG + chr1_1:15174385-15174404 Msa0010150:intron 30.0%
AATGGTGTGTAATTAAGGAA+AGG + chr1_1:15174412-15174431 Msa0010150:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG - chr1_1:15174607-15174626 None:intergenic 30.0%
CAAAGATAAGACACATGTTA+AGG - chr1_1:15174942-15174961 None:intergenic 30.0%
CTTAACATGTGTCTTATCTT+TGG + chr1_1:15174940-15174959 Msa0010150:intron 30.0%
AAGTGTGCGAGAAAAAAAAT+TGG - chr1_1:15174989-15175008 None:intergenic 30.0%
! ACTTTCTCCATTTTCTTTTC+AGG - chr1_1:15175632-15175651 None:intergenic 30.0%
ATTACATTAAAACCATGGCA+TGG + chr1_1:15175671-15175690 Msa0010150:CDS 30.0%
AATATATATTGCGTTTCAGG+TGG + chr1_1:15175944-15175963 Msa0010150:intron 30.0%
GTGTATGCTACAATGTTTAA+AGG + chr1_1:15176350-15176369 Msa0010150:intron 30.0%
! ATGTGGATGAAAAACTTTTG+AGG - chr1_1:15176732-15176751 None:intergenic 30.0%
! AAGTTTTTCATCACCACTTT+TGG - chr1_1:15177027-15177046 None:intergenic 30.0%
!! TGGTGATGAAAAACTTTTAG+AGG + chr1_1:15177031-15177050 Msa0010150:intron 30.0%
AAATATAGGTGATCAAAGCA+TGG - chr1_1:15177347-15177366 None:intergenic 30.0%
GATAAAACAGACACTTCAAA+CGG - chr1_1:15177543-15177562 None:intergenic 30.0%
!! GTTTGAAGTGTCTGTTTTAT+CGG + chr1_1:15177542-15177561 Msa0010150:intron 30.0%
!! TTTGAAGTGTCTGTTTTATC+GGG + chr1_1:15177543-15177562 Msa0010150:intron 30.0%
CAAAAAATTGTTGTGTACTC+GGG + chr1_1:15178172-15178191 Msa0010150:intron 30.0%
CATTGAAATTCAGTTTCAGA+CGG - chr1_1:15178252-15178271 None:intergenic 30.0%
! GTTTTGCTAACAATAGTAAC+TGG + chr1_1:15178708-15178727 Msa0010150:intron 30.0%
!! GTGTATTGACTAATCATACA+AGG + chr1_1:15178755-15178774 Msa0010150:intron 30.0%
!! GTATTGACTAATCATACAAG+GGG + chr1_1:15178757-15178776 Msa0010150:intron 30.0%
AGGAAAACCTATATTTATGG+TGG + chr1_1:15178780-15178799 Msa0010150:intron 30.0%
AGAAACACCACCATAAATAT+AGG - chr1_1:15178790-15178809 None:intergenic 30.0%
! TATATTTATGGTGGTGTTTC+TGG + chr1_1:15178789-15178808 Msa0010150:intron 30.0%
CATGGGAAAACTCATATTTA+TGG - chr1_1:15178861-15178880 None:intergenic 30.0%
! AAATTGCAAAAATTTTGGGC+CGG - chr1_1:15178955-15178974 None:intergenic 30.0%
ACAAATGACTCAGTTATTAC+AGG - chr1_1:15179372-15179391 None:intergenic 30.0%
TTGTAAAAAAATATCGTCCC+AGG + chr1_1:15179388-15179407 Msa0010150:intron 30.0%
AGAATATATTGAATTGGGAG+TGG - chr1_1:15179491-15179510 None:intergenic 30.0%
GTAAACTAGCTCAGTTAAAT+TGG + chr1_1:15179621-15179640 Msa0010150:intron 30.0%
! GCATAACACTATGTGTTTTA+TGG + chr1_1:15179666-15179685 Msa0010150:intron 30.0%
! CACAAGTTTTCAATCAGTTT+AGG - chr1_1:15179869-15179888 None:intergenic 30.0%
CTAAACTGATTGAAAACTTG+TGG + chr1_1:15179867-15179886 Msa0010150:intron 30.0%
GAAATGAACACTAATCTAGT+TGG + chr1_1:15180066-15180085 Msa0010150:intron 30.0%
GTTGGAGTTTAATGTAACAA+TGG + chr1_1:15180084-15180103 Msa0010150:intron 30.0%
! TGTTAAAATGTCTAGCTTGA+AGG + chr1_1:15180137-15180156 Msa0010150:intron 30.0%
TAGCTTGAAGGATCAAATAT+GGG + chr1_1:15180149-15180168 Msa0010150:intron 30.0%
TCAACCACAAAGTAACAAAA+AGG + chr1_1:15180189-15180208 Msa0010150:intron 30.0%
CAACCACAAAGTAACAAAAA+GGG + chr1_1:15180190-15180209 Msa0010150:intron 30.0%
TTGGTTAGTATAGTTCAAAG+GGG + chr1_1:15180318-15180337 Msa0010150:intron 30.0%
AGCATGAACAAATCTCATTA+AGG - chr1_1:15180363-15180382 None:intergenic 30.0%
! TGAGATTTGTTCATGCTATT+CGG + chr1_1:15180366-15180385 Msa0010150:intron 30.0%
GAGCAAACTTAATCTTCATA+TGG - chr1_1:15180446-15180465 None:intergenic 30.0%
ATTAAACACAAACAACGTCA+TGG - chr1_1:15180476-15180495 None:intergenic 30.0%
! AACATCTGATTTTTGCTGAT+AGG + chr1_1:15180830-15180849 Msa0010150:intron 30.0%
ATAAGTACAAATGGTTTCCA+TGG + chr1_1:15180865-15180884 Msa0010150:intron 30.0%
TAAGTACAAATGGTTTCCAT+GGG + chr1_1:15180866-15180885 Msa0010150:intron 30.0%
!! TATAGGTAAGTACTGGTATT+AGG - chr1_1:15180955-15180974 None:intergenic 30.0%
ACTCCAAATTACATCAACAA+AGG + chr1_1:15181006-15181025 Msa0010150:intron 30.0%
CTCCAAATTACATCAACAAA+GGG + chr1_1:15181007-15181026 Msa0010150:intron 30.0%
TTCCCTTTGTTGATGTAATT+TGG - chr1_1:15181012-15181031 None:intergenic 30.0%
AATTTCAATATGGACCTACA+TGG + chr1_1:15181064-15181083 Msa0010150:intron 30.0%
ATAAATGTACCTCACTACTA+TGG - chr1_1:15181362-15181381 None:intergenic 30.0%
TATATAGAACCCTAGTTGTA+CGG + chr1_1:15181389-15181408 Msa0010150:intron 30.0%
TGTCATTGAAGAACTTTCTA+TGG + chr1_1:15181494-15181513 Msa0010150:CDS 30.0%
CATTAAGAGAAGGTTAAGTA+AGG - chr1_1:15181850-15181869 None:intergenic 30.0%
! GAGATCTAGAGTTTAAATCT+TGG - chr1_1:15181917-15181936 None:intergenic 30.0%
ATCGTAAATCAAGTAGCTAT+AGG - chr1_1:15181939-15181958 None:intergenic 30.0%
ATGTTAACCCTTAGATTATC+GGG + chr1_1:15181997-15182016 Msa0010150:intron 30.0%
TGACATCATAACTACAATTG+AGG + chr1_1:15182183-15182202 Msa0010150:intron 30.0%
! TTTCTAAATTGCTGTTGCAT+AGG - chr1_1:15182237-15182256 None:intergenic 30.0%
TCGAACATAAAAGTTAACCA+AGG + chr1_1:15182417-15182436 Msa0010150:intron 30.0%
CGAACATAAAAGTTAACCAA+GGG + chr1_1:15182418-15182437 Msa0010150:intron 30.0%
TTAACCAAGGGTTATAAGTT+AGG + chr1_1:15182430-15182449 Msa0010150:intron 30.0%
!! TTCCTTTTGATTGTAGAGAT+TGG + chr1_1:15182599-15182618 Msa0010150:intron 30.0%
TTCCAATCTCTACAATCAAA+AGG - chr1_1:15182604-15182623 None:intergenic 30.0%
TCCAACAACGAATCTAAATT+TGG + chr1_1:15182641-15182660 Msa0010150:CDS 30.0%
ACCAAATTTAGATTCGTTGT+TGG - chr1_1:15182645-15182664 None:intergenic 30.0%
TTAATATGGACCTCTCAAAT+TGG + chr1_1:15182955-15182974 Msa0010150:intron 30.0%
AAATGGTAAATGTCAACCAT+TGG - chr1_1:15182982-15183001 None:intergenic 30.0%
ATAGGGACTAAAAATGTTGA+TGG + chr1_1:15183186-15183205 Msa0010150:intron 30.0%
ATAGGGACTAAAAATGATGA+TGG + chr1_1:15183218-15183237 Msa0010150:intron 30.0%
!! ATTGAGGATTTTTGATGATC+CGG - chr1_1:15183608-15183627 None:intergenic 30.0%
CACATAATATAGAAGGGTTA+AGG + chr1_1:15184103-15184122 Msa0010150:intron 30.0%
CATAATATAGAAGGGTTAAG+GGG + chr1_1:15184105-15184124 Msa0010150:intron 30.0%
!! CATTTTCTTTTCAGGATCAT+TGG - chr1_1:15184234-15184253 None:intergenic 30.0%
CAATGATCCTGAAAAGAAAA+TGG + chr1_1:15184232-15184251 Msa0010150:CDS 30.0%
! ACTTTCTCCATTTTCTTTTC+AGG - chr1_1:15175632-15175651 None:intergenic 30.0%
TGAAAAGAAAATGGAGAAAG+TGG + chr1_1:15175631-15175650 Msa0010150:CDS 30.0%
AGTAATGACTGAGATTAGAT+TGG - chr1_1:15184582-15184601 None:intergenic 30.0%
ACAAATATAATTGGCATTGC+AGG + chr1_1:15184758-15184777 Msa0010150:intron 30.0%
TAAGCAGAAAATGCAGATAT+TGG + chr1_1:15184857-15184876 Msa0010150:CDS 30.0%
GTTGTGATAGTTAAACCTTC+TGG + chr1_1:15173702-15173721 Msa0010150:CDS 35.0%
ATAGAGAGGAAAGGCTTAAT+GGG - chr1_1:15173753-15173772 None:intergenic 35.0%
TATAGAGAGGAAAGGCTTAA+TGG - chr1_1:15173754-15173773 None:intergenic 35.0%
AGATAAAATAGGGCCAACAA+TGG + chr1_1:15173930-15173949 Msa0010150:intron 35.0%
AGTTATTAGGGTTTGAACCT+TGG + chr1_1:15174122-15174141 Msa0010150:intron 35.0%
GTTTGAACCTTGGATTTCTT+AGG + chr1_1:15174132-15174151 Msa0010150:intron 35.0%
! GAGGTAATGGTGTGTAATTA+AGG + chr1_1:15174407-15174426 Msa0010150:intron 35.0%
!!! GACATGTATTTTGAAACGGA+AGG - chr1_1:15174835-15174854 None:intergenic 35.0%
CATATGTGAAATGGTTGACT+TGG - chr1_1:15174625-15174644 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+GGG - chr1_1:15174648-15174667 None:intergenic 35.0%
TTAACGGTCAAAATTGTGCA+TGG - chr1_1:15174649-15174668 None:intergenic 35.0%
CTTAAGGGTTATAAGTTAGG+TGG + chr1_1:15175127-15175146 Msa0010150:intron 35.0%
!!! TATGGGGATTGTTTTTGTGT+CGG + chr1_1:15175173-15175192 Msa0010150:intron 35.0%
TTCCAATCTCTGCAATCAAA+CGG - chr1_1:15175303-15175322 None:intergenic 35.0%
TTGAAATTGGAAGCAACAGA+AGG + chr1_1:15175371-15175390 Msa0010150:CDS 35.0%
TAGTATTTGTAACAACGACG+AGG - chr1_1:15175600-15175619 None:intergenic 35.0%
! TTTTCTGCTTAAGCATGTCA+CGG - chr1_1:15176031-15176050 None:intergenic 35.0%
CAATGGATATCCTCAAGAAA+AGG - chr1_1:15176080-15176099 None:intergenic 35.0%
CAAAGCTTACTAGGATACAA+TGG - chr1_1:15176097-15176116 None:intergenic 35.0%
!! GGAACATCAAGCGTTATTTT+AGG + chr1_1:15176371-15176390 Msa0010150:intron 35.0%
!! CACAAATCAAGTTTTTGGAG+TGG + chr1_1:15176501-15176520 Msa0010150:intron 35.0%
!!! AAGTTTTTGGAGTGGTTGTT+TGG + chr1_1:15176509-15176528 Msa0010150:intron 35.0%
CATGGTCCAACTTAAAAGTA+TGG - chr1_1:15176762-15176781 None:intergenic 35.0%
CATGAGTTAACTGAAAAGCA+TGG + chr1_1:15177000-15177019 Msa0010150:intron 35.0%
AAGTGGTAGTCAACGTTAAT+TGG - chr1_1:15177228-15177247 None:intergenic 35.0%
GAATGAAGTTGTGAACAAAG+TGG - chr1_1:15177245-15177264 None:intergenic 35.0%
GTGATCATAATGACAGTATG+CGG - chr1_1:15177291-15177310 None:intergenic 35.0%
TGATACTAATTCTTAAGGGG+TGG + chr1_1:15177433-15177452 Msa0010150:intron 35.0%
TTTGAGAAGAGAAGGAGAAA+AGG + chr1_1:15177780-15177799 Msa0010150:intron 35.0%
GGAGAAAAGGAAGATGATAA+AGG + chr1_1:15177793-15177812 Msa0010150:intron 35.0%
AAGGAAGATGATAAAGGAGA+AGG + chr1_1:15177799-15177818 Msa0010150:intron 35.0%
ATAAAGGAGAAGGATGACAA+AGG + chr1_1:15177809-15177828 Msa0010150:intron 35.0%
TAAAGGAGAAGGATGACAAA+GGG + chr1_1:15177810-15177829 Msa0010150:intron 35.0%
! TGTTTTCAAATCCATTTCGC+TGG + chr1_1:15177840-15177859 Msa0010150:intron 35.0%
TGGAGTGAAGATGAAAGATA+TGG + chr1_1:15177863-15177882 Msa0010150:intron 35.0%
GGAGTGAAGATGAAAGATAT+GGG + chr1_1:15177864-15177883 Msa0010150:intron 35.0%
! TAGCTAGTTCTCAAAGAAGA+AGG + chr1_1:15177896-15177915 Msa0010150:intron 35.0%
TCTCAAAGAAGAAGGAATAG+AGG + chr1_1:15177904-15177923 Msa0010150:intron 35.0%
AAATTCAGTTTCAGACGGAT+TGG - chr1_1:15178247-15178266 None:intergenic 35.0%
!! AATATATGTGCCGTTTGCAA+AGG - chr1_1:15178498-15178517 None:intergenic 35.0%
AACGGCACATATATTTCTTG+CGG + chr1_1:15178503-15178522 Msa0010150:intron 35.0%
CAGCTGGTAAATAAAACATC+CGG + chr1_1:15178577-15178596 Msa0010150:intron 35.0%
TGCTAACAATAGTAACTGGA+AGG + chr1_1:15178712-15178731 Msa0010150:intron 35.0%
GGTGTATGTCACTATGTTAA+AGG + chr1_1:15178733-15178752 Msa0010150:intron 35.0%
GGGAGGAAAACCTATATTTA+TGG + chr1_1:15178777-15178796 Msa0010150:intron 35.0%
GGGAAAACTCATATTTATGG+TGG - chr1_1:15178858-15178877 None:intergenic 35.0%
CGTGTTGAGTAATCATACAT+GGG - chr1_1:15178878-15178897 None:intergenic 35.0%
CCAACACTATTACAAAGTCT+GGG - chr1_1:15179104-15179123 None:intergenic 35.0%
TCAGTATGTTATATCAGTGG+CGG - chr1_1:15179129-15179148 None:intergenic 35.0%
ACGTCAGTATGTTATATCAG+TGG - chr1_1:15179132-15179151 None:intergenic 35.0%
AAACAGTAATTGCATTCGCA+AGG + chr1_1:15179202-15179221 Msa0010150:intron 35.0%
ATGACTCAGTTATTACAGGA+CGG - chr1_1:15179368-15179387 None:intergenic 35.0%
TGAGTGTCTTTGACAAGTAT+TGG - chr1_1:15179543-15179562 None:intergenic 35.0%
GAAAGAGAGAGAGAGAAAAA+TGG - chr1_1:15179569-15179588 None:intergenic 35.0%
CGATTTATAGAATCTGAACC+AGG - chr1_1:15179790-15179809 None:intergenic 35.0%
TGATTGAAAACTTGTGGGTT+GGG + chr1_1:15179873-15179892 Msa0010150:intron 35.0%
CAAAAGATCTTGTCTTTCAC+TGG - chr1_1:15179931-15179950 None:intergenic 35.0%
! CTACCATACACCTACAATTT+TGG + chr1_1:15179955-15179974 Msa0010150:intron 35.0%
TGGGAAACCCATTATGTTTA+TGG + chr1_1:15180104-15180123 Msa0010150:intron 35.0%
ACACGGACCATAAACATAAT+GGG - chr1_1:15180114-15180133 None:intergenic 35.0%
AACACGGACCATAAACATAA+TGG - chr1_1:15180115-15180134 None:intergenic 35.0%
CTAGCTTGAAGGATCAAATA+TGG + chr1_1:15180148-15180167 Msa0010150:intron 35.0%
!!! TGACCCTTTTTGTTACTTTG+TGG - chr1_1:15180196-15180215 None:intergenic 35.0%
CTAACCAATTATCAGGAACA+GGG - chr1_1:15180306-15180325 None:intergenic 35.0%
ACTAACCAATTATCAGGAAC+AGG - chr1_1:15180307-15180326 None:intergenic 35.0%
! GAGATTTGTTCATGCTATTC+GGG + chr1_1:15180367-15180386 Msa0010150:intron 35.0%
AATTATTATGCAAGTGGGGA+AGG - chr1_1:15180908-15180927 None:intergenic 35.0%
TTTATGCGCATGATGATCTA+CGG - chr1_1:15180979-15180998 None:intergenic 35.0%
TGTCACCGTCAATAGTTTAA+AGG + chr1_1:15181158-15181177 Msa0010150:intron 35.0%
GTCACCGTCAATAGTTTAAA+GGG + chr1_1:15181159-15181178 Msa0010150:intron 35.0%
TCACCGTCAATAGTTTAAAG+GGG + chr1_1:15181160-15181179 Msa0010150:intron 35.0%
GTTCCCCTTTAAACTATTGA+CGG - chr1_1:15181166-15181185 None:intergenic 35.0%
! AAGTCTAAGAAGCTTTGACA+AGG + chr1_1:15181264-15181283 Msa0010150:intron 35.0%
ACTTGAAATCCATAGTAGTG+AGG + chr1_1:15181350-15181369 Msa0010150:intron 35.0%
TACGGAGAAGGAAGAAATTA+AGG + chr1_1:15181407-15181426 Msa0010150:intron 35.0%
GAGAAGGAAGAAATTAAGGA+AGG + chr1_1:15181411-15181430 Msa0010150:intron 35.0%
!! GGTTGATGAAATATGAAGAG+TGG + chr1_1:15181432-15181451 Msa0010150:intron 35.0%
GAGTGGTAAGAGAGAAATAA+TGG + chr1_1:15181449-15181468 Msa0010150:intron 35.0%
ACATATAGAGAGAAAAGGCT+TGG - chr1_1:15181571-15181590 None:intergenic 35.0%
TATTCAGTTCTGCATGTTCT+TGG + chr1_1:15181591-15181610 Msa0010150:intron 35.0%
AGAAAAAATTGGGCCAACAA+TGG + chr1_1:15181718-15181737 Msa0010150:intron 35.0%
AGGTTAAGTAAGGGTTAACT+GGG - chr1_1:15181840-15181859 None:intergenic 35.0%
AAGGTTAAGTAAGGGTTAAC+TGG - chr1_1:15181841-15181860 None:intergenic 35.0%
CTCTTATCCCGATAATCTAA+GGG - chr1_1:15182007-15182026 None:intergenic 35.0%
TCTCTTATCCCGATAATCTA+AGG - chr1_1:15182008-15182027 None:intergenic 35.0%
TTATCGGGATAAGAGAACTT+TGG + chr1_1:15182012-15182031 Msa0010150:intron 35.0%
GAGATCGTCAAAAGATGAAT+CGG - chr1_1:15182119-15182138 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr1_1:15183132-15183151 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr1_1:15183133-15183152 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr1_1:15183146-15183165 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr1_1:15183154-15183173 Msa0010150:intron 35.0%
GACGATGCATAAAATATGCA+AGG + chr1_1:15183546-15183565 Msa0010150:intron 35.0%
TGCATAAAATATGCAAGGTC+TGG + chr1_1:15183551-15183570 Msa0010150:intron 35.0%
GCATAAAATATGCAAGGTCT+GGG + chr1_1:15183552-15183571 Msa0010150:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG + chr1_1:15183553-15183572 Msa0010150:intron 35.0%
!!! TTGATGATCCGGGTTTTTTT+TGG - chr1_1:15183597-15183616 None:intergenic 35.0%
!! TTGAGGATTTTTGATGATCC+GGG - chr1_1:15183607-15183626 None:intergenic 35.0%
TGGAATTTCTGCTAATTGTG+AGG - chr1_1:15183819-15183838 None:intergenic 35.0%
TGTGCAAATCTCAAATGAGA+CGG - chr1_1:15183905-15183924 None:intergenic 35.0%
AATTTCAGGAGCTATTATGC+AGG + chr1_1:15184171-15184190 Msa0010150:intron 35.0%
TAATGAGGAGGTAAAATCCA+AGG - chr1_1:15184198-15184217 None:intergenic 35.0%
ATGAAGCTACATTAAAACCG+TGG + chr1_1:15184276-15184295 Msa0010150:CDS 35.0%
! TGTGATTGAAATTTAGGGTG+AGG + chr1_1:15184659-15184678 Msa0010150:intron 35.0%
! GTGATTGAAATTTAGGGTGA+GGG + chr1_1:15184660-15184679 Msa0010150:intron 35.0%
! TGATTGAAATTTAGGGTGAG+GGG + chr1_1:15184661-15184680 Msa0010150:intron 35.0%
AATATAATTGGCATTGCAGG+TGG + chr1_1:15184761-15184780 Msa0010150:intron 35.0%
! TTTTCTGCTTAAGCATGTCA+CGG - chr1_1:15176031-15176050 None:intergenic 35.0%
! GAAGAGTGCAAAGAGAGAAA+TGG + chr1_1:15173635-15173654 Msa0010150:CDS 40.0%
! GCTTCAAGATTTTCTCCAGA+AGG - chr1_1:15173720-15173739 None:intergenic 40.0%
TAGAGAGGAAAGGCTTAATG+GGG - chr1_1:15173752-15173771 None:intergenic 40.0%
TGTCTCAAAACAGCCATTGT+TGG - chr1_1:15173946-15173965 None:intergenic 40.0%
TAAGAGAAGGGTTAAATGGG+TGG - chr1_1:15174050-15174069 None:intergenic 40.0%
GGTACTACCTAAGAAATCCA+AGG - chr1_1:15174142-15174161 None:intergenic 40.0%
GTAAGTTGTGGGACACAAAA+GGG - chr1_1:15174163-15174182 None:intergenic 40.0%
AGTAAGTTGTGGGACACAAA+AGG - chr1_1:15174164-15174183 None:intergenic 40.0%
AGTGTCAAGCAGTAAGTTGT+GGG - chr1_1:15174174-15174193 None:intergenic 40.0%
TAGTGTCAAGCAGTAAGTTG+TGG - chr1_1:15174175-15174194 None:intergenic 40.0%
TATTTGGCGTAAATCAAGGG+AGG + chr1_1:15174388-15174407 Msa0010150:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr1_1:15174834-15174853 Msa0010150:intron 40.0%
TTCCGTTTGATTGCAGAGAT+TGG + chr1_1:15175298-15175317 Msa0010150:intron 40.0%
AACAGAAGGCAATGCAAAGA+AGG + chr1_1:15175385-15175404 Msa0010150:CDS 40.0%
ACAGAAGGCAATGCAAAGAA+GGG + chr1_1:15175386-15175405 Msa0010150:CDS 40.0%
CATTAAAACCATGGCATGGA+TGG + chr1_1:15175675-15175694 Msa0010150:CDS 40.0%
! TCTACTTGTGCCTTTTCTTG+AGG + chr1_1:15176067-15176086 Msa0010150:CDS 40.0%
AATGCAGAGATGCTAACATG+TGG + chr1_1:15176400-15176419 Msa0010150:intron 40.0%
! TTGGAGTGGTTGCAAGTTTT+TGG + chr1_1:15176528-15176547 Msa0010150:intron 40.0%
! TGAAAAGCATGGACCAAAAG+TGG + chr1_1:15177011-15177030 Msa0010150:intron 40.0%
TGGTAGTCAACGTTAATTGG+TGG - chr1_1:15177225-15177244 None:intergenic 40.0%
ATCATAATGACAGTATGCGG+CGG - chr1_1:15177288-15177307 None:intergenic 40.0%
ATTCTTAAGGGGTGGACATA+CGG + chr1_1:15177441-15177460 Msa0010150:intron 40.0%
! GTGTCTGTTTTATCGGGTAT+CGG + chr1_1:15177549-15177568 Msa0010150:intron 40.0%
!!! TGTTTTATCGGGTATCGGTT+TGG + chr1_1:15177554-15177573 Msa0010150:intron 40.0%
GACTGAGATTTGAGAAGAGA+AGG + chr1_1:15177772-15177791 Msa0010150:intron 40.0%
AAAGGAGAAGGATGACAAAG+GGG + chr1_1:15177811-15177830 Msa0010150:intron 40.0%
TTTCAAATCCATTTCGCTGG+TGG + chr1_1:15177843-15177862 Msa0010150:intron 40.0%
GTAGTATATAGTCCAAGCTG+TGG + chr1_1:15178132-15178151 Msa0010150:intron 40.0%
TTCACATTTCAACCACAGCT+TGG - chr1_1:15178147-15178166 None:intergenic 40.0%
AAAATTGTTGTGTACTCGGG+CGG + chr1_1:15178175-15178194 Msa0010150:intron 40.0%
!! AGTTTCAGACGGATTGGAAT+GGG - chr1_1:15178241-15178260 None:intergenic 40.0%
GATCTCTCTTCCTTTGCAAA+CGG + chr1_1:15178485-15178504 Msa0010150:intron 40.0%
!!! CGGATGTTTTATTTACCAGC+TGG - chr1_1:15178579-15178598 None:intergenic 40.0%
TTGACTAATCATACAAGGGG+AGG + chr1_1:15178760-15178779 Msa0010150:intron 40.0%
AGGGAGCAACATAAATGGAA+CGG - chr1_1:15178824-15178843 None:intergenic 40.0%
! TATGGTGGTGTTTATTGGGA+GGG - chr1_1:15178843-15178862 None:intergenic 40.0%
! TTATGGTGGTGTTTATTGGG+AGG - chr1_1:15178844-15178863 None:intergenic 40.0%
GCGTGTTGAGTAATCATACA+TGG - chr1_1:15178879-15178898 None:intergenic 40.0%
TCAACACGCATTTAACACAG+TGG + chr1_1:15178890-15178909 Msa0010150:intron 40.0%
CCCAGACTTTGTAATAGTGT+TGG + chr1_1:15179101-15179120 Msa0010150:intron 40.0%
GCCAACACTATTACAAAGTC+TGG - chr1_1:15179105-15179124 None:intergenic 40.0%
! TGACGTATTTGCTACATGCT+GGG + chr1_1:15179146-15179165 Msa0010150:intron 40.0%
GCAAATGATAGCCACAAGAT+CGG - chr1_1:15179277-15179296 None:intergenic 40.0%
TGAAATGGGTCAAGATTCCT+GGG - chr1_1:15179408-15179427 None:intergenic 40.0%
!! GTGTCTTTGACAAGTATTGG+TGG - chr1_1:15179540-15179559 None:intergenic 40.0%
CTAGCTCAGTTAAATTGGGA+CGG + chr1_1:15179626-15179645 Msa0010150:intron 40.0%
TGCAAAATCATGTGCATACC+TGG + chr1_1:15179769-15179788 Msa0010150:intron 40.0%
CTGATTGAAAACTTGTGGGT+TGG + chr1_1:15179872-15179891 Msa0010150:intron 40.0%
! GATTGAAAACTTGTGGGTTG+GGG + chr1_1:15179874-15179893 Msa0010150:intron 40.0%
CCACCAAAATTGTAGGTGTA+TGG - chr1_1:15179961-15179980 None:intergenic 40.0%
! CCATACACCTACAATTTTGG+TGG + chr1_1:15179958-15179977 Msa0010150:intron 40.0%
GTGCATACCACCAAAATTGT+AGG - chr1_1:15179968-15179987 None:intergenic 40.0%
TACTCATATCGTCGTTGTTC+TGG - chr1_1:15180283-15180302 None:intergenic 40.0%
AGTACCCTGTTCCTGATAAT+TGG + chr1_1:15180299-15180318 Msa0010150:intron 40.0%
!! TTTGACTTGCCCCATGATAT+AGG + chr1_1:15180394-15180413 Msa0010150:intron 40.0%
CTACGGTTATAGGTAAGTAC+TGG - chr1_1:15180962-15180981 None:intergenic 40.0%
GCATGATGATCTACGGTTAT+AGG - chr1_1:15180972-15180991 None:intergenic 40.0%
! AGAAGCTTTGACAAGGTACT+TGG + chr1_1:15181271-15181290 Msa0010150:intron 40.0%
! GCTTCATGGTTTTCTTCAGT+TGG - chr1_1:15181534-15181553 None:intergenic 40.0%
! ATAGAGAGAAAAGGCTTGGT+GGG - chr1_1:15181567-15181586 None:intergenic 40.0%
TATAGAGAGAAAAGGCTTGG+TGG - chr1_1:15181568-15181587 None:intergenic 40.0%
TGTCTCAAAACAGCCATTGT+TGG - chr1_1:15173946-15173965 None:intergenic 40.0%
TTAAGTAAGGGTTAACTGGG+TGG - chr1_1:15181837-15181856 None:intergenic 40.0%
ACCACTTGAGTTCAATCACT+TGG + chr1_1:15182143-15182162 Msa0010150:intron 40.0%
ACCAAGTGATTGAACTCAAG+TGG - chr1_1:15182147-15182166 None:intergenic 40.0%
CGTTCTCATTGAAAGAACAC+AGG - chr1_1:15182291-15182310 None:intergenic 40.0%
ACCAAGGGTTATAAGTTAGG+TGG + chr1_1:15182433-15182452 Msa0010150:intron 40.0%
ACCACCTAACTTATAACCCT+TGG - chr1_1:15175131-15175150 None:intergenic 40.0%
TTGAAAATGGAAGCAACGGA+AGG + chr1_1:15182672-15182691 Msa0010150:CDS 40.0%
AACCATTGGACCAATTTGAG+AGG - chr1_1:15182968-15182987 None:intergenic 40.0%
! ACAGTGGACCCTCATATTTT+TGG - chr1_1:15183482-15183501 None:intergenic 40.0%
!!! GTTTTTTTTGGTAGTGGTCG+GGG - chr1_1:15183585-15183604 None:intergenic 40.0%
!!! GGTTTTTTTTGGTAGTGGTC+GGG - chr1_1:15183586-15183605 None:intergenic 40.0%
!!! GGGTTTTTTTTGGTAGTGGT+CGG - chr1_1:15183587-15183606 None:intergenic 40.0%
GACCACTACCAAAAAAAACC+CGG + chr1_1:15183586-15183605 Msa0010150:intron 40.0%
!!! ATCCGGGTTTTTTTTGGTAG+TGG - chr1_1:15183591-15183610 None:intergenic 40.0%
GATTTCATCAACTGCTGTCA+GGG + chr1_1:15184307-15184326 Msa0010150:CDS 40.0%
! AAATTTAGGGTGAGGGGATT+AGG + chr1_1:15184667-15184686 Msa0010150:intron 40.0%
GGTCTTCATCTTCAGTCATA+AGG - chr1_1:15184827-15184846 None:intergenic 40.0%
GCGTAAATCAAGGGAGGTAA+TGG + chr1_1:15174394-15174413 Msa0010150:intron 45.0%
GTGCATGGGCATATGTGAAA+TGG - chr1_1:15174634-15174653 None:intergenic 45.0%
!!! GGGATTGTTTTTGTGTCGGA+CGG + chr1_1:15175177-15175196 Msa0010150:intron 45.0%
!!! GGATTGTTTTTGTGTCGGAC+GGG + chr1_1:15175178-15175197 Msa0010150:intron 45.0%
CAGAAGGCAATGCAAAGAAG+GGG + chr1_1:15175387-15175406 Msa0010150:CDS 45.0%
GCTGCAGTAAAGCCTTTGTT+TGG + chr1_1:15175414-15175433 Msa0010150:CDS 45.0%
! AAGCCTTTGTTTGGCTCACA+AGG + chr1_1:15175423-15175442 Msa0010150:CDS 45.0%
TCACCTTGTGAGCCAAACAA+AGG - chr1_1:15175429-15175448 None:intergenic 45.0%
!! TGGTGCTGCATATATTCTGC+AGG + chr1_1:15175561-15175580 Msa0010150:intron 45.0%
GATGAAATCCATCCATGCCA+TGG - chr1_1:15175686-15175705 None:intergenic 45.0%
!! GGTGGCTCTAAGATTAGTTC+CGG + chr1_1:15175962-15175981 Msa0010150:intron 45.0%
! TTTGGAGTGGTTGTTTGGAG+TGG + chr1_1:15176514-15176533 Msa0010150:intron 45.0%
GCAGTCAAGGTGATGATCAA+CGG - chr1_1:15177325-15177344 None:intergenic 45.0%
TGATCAAAGCATGGCAGTCA+AGG - chr1_1:15177338-15177357 None:intergenic 45.0%
TTCTTAAGGGGTGGACATAC+GGG + chr1_1:15177442-15177461 Msa0010150:intron 45.0%
!! TTATCGGGTATCGGTTTGGT+TGG + chr1_1:15177558-15177577 Msa0010150:intron 45.0%
!! TATCGGGTATCGGTTTGGTT+GGG + chr1_1:15177559-15177578 Msa0010150:intron 45.0%
!! TATCGGTTTGGTTGGGTGTT+GGG + chr1_1:15177566-15177585 Msa0010150:intron 45.0%
GTTTGTCGGGTGGTTTGAAA+CGG + chr1_1:15177588-15177607 Msa0010150:intron 45.0%
! TTTGTCGGGTGGTTTGAAAC+GGG + chr1_1:15177589-15177608 Msa0010150:intron 45.0%
AAATTGTTGTGTACTCGGGC+GGG + chr1_1:15178176-15178195 Msa0010150:intron 45.0%
! GTTTTCAAAAGCCAACCCAG+CGG - chr1_1:15178210-15178229 None:intergenic 45.0%
!! CAGTTTCAGACGGATTGGAA+TGG - chr1_1:15178242-15178261 None:intergenic 45.0%
GAACCGGAAAATGACCAAAC+GGG - chr1_1:15178305-15178324 None:intergenic 45.0%
CGAACCGGAAAATGACCAAA+CGG - chr1_1:15178306-15178325 None:intergenic 45.0%
!! CGTTTGGTCATTTTCCGGTT+CGG + chr1_1:15178304-15178323 Msa0010150:intron 45.0%
!!! CATTTTCCGGTTCGGTTTTC+CGG + chr1_1:15178312-15178331 Msa0010150:intron 45.0%
!!! ATTTTCCGGTTCGGTTTTCC+GGG + chr1_1:15178313-15178332 Msa0010150:intron 45.0%
! GTACCTTTAGGAGGTGTGAT+TGG + chr1_1:15178370-15178389 Msa0010150:intron 45.0%
AGACCAATCACACCTCCTAA+AGG - chr1_1:15178376-15178395 None:intergenic 45.0%
TTGGGAGGGAGCAACATAAA+TGG - chr1_1:15178829-15178848 None:intergenic 45.0%
! CTGACGTATTTGCTACATGC+TGG + chr1_1:15179145-15179164 Msa0010150:intron 45.0%
CGCGTTTGCTTAAACACATG+TGG - chr1_1:15179229-15179248 None:intergenic 45.0%
GCAAATGATAGCCGATCTTG+TGG + chr1_1:15179263-15179282 Msa0010150:intron 45.0%
CTCAGTTATTACAGGACGGA+GGG - chr1_1:15179364-15179383 None:intergenic 45.0%
ACTCAGTTATTACAGGACGG+AGG - chr1_1:15179365-15179384 None:intergenic 45.0%
CTGAAATGGGTCAAGATTCC+TGG - chr1_1:15179409-15179428 None:intergenic 45.0%
CTCAGTTAAATTGGGACGGA+GGG + chr1_1:15179630-15179649 Msa0010150:intron 45.0%
! TTTGGTGGTATGCACTGCAA+AGG + chr1_1:15179973-15179992 Msa0010150:intron 45.0%
GTTGTTCTGGCGTTTCATCT+GGG - chr1_1:15180270-15180289 None:intergenic 45.0%
GGTTTCCATGGGAAAAAGAG+TGG + chr1_1:15180877-15180896 Msa0010150:intron 45.0%
! ACATGCCACTCTTTTTCCCA+TGG - chr1_1:15180885-15180904 None:intergenic 45.0%
CTTCCTTCTCCGTACAACTA+GGG - chr1_1:15181401-15181420 None:intergenic 45.0%
TCTTCCTTCTCCGTACAACT+AGG - chr1_1:15181402-15181421 None:intergenic 45.0%
!! TAGAGAGAAAAGGCTTGGTG+GGG - chr1_1:15181566-15181585 None:intergenic 45.0%
GTTAGGCTATGAGCCAAGTA+TGG + chr1_1:15182044-15182063 Msa0010150:intron 45.0%
!! AACGGAAGGCATTGCAAAGA+AGG + chr1_1:15182686-15182705 Msa0010150:CDS 45.0%
!! ACGGAAGGCATTGCAAAGAA+GGG + chr1_1:15182687-15182706 Msa0010150:CDS 45.0%
TCACCTTGTGAGCCAAACAA+AGG - chr1_1:15175429-15175448 None:intergenic 45.0%
GACCTCTCAAATTGGTCCAA+TGG + chr1_1:15182963-15182982 Msa0010150:intron 45.0%
GGGCGTCTAATATGAGACAT+GGG + chr1_1:15184125-15184144 Msa0010150:intron 45.0%
GCTACATTAAAACCGTGGCA+TGG + chr1_1:15184281-15184300 Msa0010150:CDS 45.0%
CATTAAAACCGTGGCATGGA+TGG + chr1_1:15184285-15184304 Msa0010150:CDS 45.0%
GATGAAATCCATCCATGCCA+CGG - chr1_1:15175686-15175705 None:intergenic 45.0%
GGATTTCATCAACTGCTGTC+AGG + chr1_1:15184306-15184325 Msa0010150:CDS 45.0%
!!! TCTATTTTTATAAAATATTT+AGG + chr1_1:15175837-15175856 Msa0010150:intron 5.0%
!!! TTCATAATTTTTAAAATATT+TGG - chr1_1:15180510-15180529 None:intergenic 5.0%
!!! TATTTTAAAAATTATGAAAT+TGG + chr1_1:15180512-15180531 Msa0010150:intron 5.0%
!!! GTTTTTTAATTTAATAAAAT+GGG - chr1_1:15180740-15180759 None:intergenic 5.0%
!!! AGTTTTTTAATTTAATAAAA+TGG - chr1_1:15180741-15180760 None:intergenic 5.0%
!! ATTAATCATATTTAAAAAAA+TGG - chr1_1:15182546-15182565 None:intergenic 5.0%
!!! TTTTTTTAAATATGATTAAT+TGG + chr1_1:15182546-15182565 Msa0010150:intron 5.0%
!!! ATTTTTCAATTAAAAAAAAT+AGG + chr1_1:15183952-15183971 Msa0010150:intron 5.0%
!!! ATTAACTATTTTAATAAATA+AGG + chr1_1:15183994-15184013 Msa0010150:intron 5.0%
!!! TTAACTATTTTAATAAATAA+GGG + chr1_1:15183995-15184014 Msa0010150:intron 5.0%
!!! AACTTTATTTATTTATTTTT+GGG - chr1_1:15184551-15184570 None:intergenic 5.0%
!!! TAACTTTATTTATTTATTTT+TGG - chr1_1:15184552-15184571 None:intergenic 5.0%
!!! TATTAATTTTTAGAAATTTT+AGG + chr1_1:15184621-15184640 Msa0010150:intron 5.0%
GCATATATTCTGCAGGACCC+TGG + chr1_1:15175568-15175587 Msa0010150:intron 50.0%
CAACGACGAGGTGAAATCCA+GGG - chr1_1:15175588-15175607 None:intergenic 50.0%
ACAACGACGAGGTGAAATCC+AGG - chr1_1:15175589-15175608 None:intergenic 50.0%
GCGGTCAGATCAGAGATCAA+AGG - chr1_1:15177269-15177288 None:intergenic 50.0%
GTCAAGGTGATGATCAACGG+TGG - chr1_1:15177322-15177341 None:intergenic 50.0%
AGTTCATGTTTGCAGCCCGT+CGG - chr1_1:15177511-15177530 None:intergenic 50.0%
!! GTATCGGTTTGGTTGGGTGT+TGG + chr1_1:15177565-15177584 Msa0010150:intron 50.0%
!! TGGTTGGGTGTTGGGTTTGT+CGG + chr1_1:15177574-15177593 Msa0010150:intron 50.0%
TCTTCACTCCACCAGCGAAA+TGG - chr1_1:15177854-15177873 None:intergenic 50.0%
!! TTCAGACGGATTGGAATGGG+CGG - chr1_1:15178238-15178257 None:intergenic 50.0%
GTGGACAAAAACCCGTGAAC+CGG - chr1_1:15178344-15178363 None:intergenic 50.0%
!! ACACCTCCTAAAGGTACCCT+GGG - chr1_1:15178367-15178386 None:intergenic 50.0%
TGTCAACATGTGCTACCAGC+TGG + chr1_1:15178561-15178580 Msa0010150:intron 50.0%
! AAAAATTTTGGGCCGGAGCG+CGG - chr1_1:15178948-15178967 None:intergenic 50.0%
TGCTACATGCTGGGACATCT+TGG + chr1_1:15179155-15179174 Msa0010150:intron 50.0%
GCTCAGTTAAATTGGGACGG+AGG + chr1_1:15179629-15179648 Msa0010150:intron 50.0%
CGTTGTTCTGGCGTTTCATC+TGG - chr1_1:15180271-15180290 None:intergenic 50.0%
GAACCCTAGTTGTACGGAGA+AGG + chr1_1:15181395-15181414 Msa0010150:intron 50.0%
TGGGGATATGAGCAGCTTCA+TGG - chr1_1:15173734-15173753 None:intergenic 50.0%
!! CGGAAGGCATTGCAAAGAAG+GGG + chr1_1:15182688-15182707 Msa0010150:CDS 50.0%
GCTGCAGTAAGGCCTTTGTT+TGG + chr1_1:15182715-15182734 Msa0010150:intron 50.0%
! AGGCCTTTGTTTGGCTCACA+AGG + chr1_1:15182724-15182743 Msa0010150:intron 50.0%
TGAGGGTCCACTGTTAAACC+CGG + chr1_1:15183488-15183507 Msa0010150:intron 50.0%
CGATGATCCGGGTTTAACAG+TGG - chr1_1:15183498-15183517 None:intergenic 50.0%
! GGGGCGTCTAATATGAGACA+TGG + chr1_1:15184124-15184143 Msa0010150:intron 50.0%
GGAGCTATTATGCAGGACCT+TGG + chr1_1:15184178-15184197 Msa0010150:intron 50.0%
TTAAGGGGTGGACATACGGG+CGG + chr1_1:15177445-15177464 Msa0010150:intron 55.0%
TGCCCACCGAATGAAACCGA+CGG + chr1_1:15177492-15177511 Msa0010150:intron 55.0%
!! TGCAGCCCGTCGGTTTCATT+CGG - chr1_1:15177501-15177520 None:intergenic 55.0%
!! GGTTGGGTGTTGGGTTTGTC+GGG + chr1_1:15177575-15177594 Msa0010150:intron 55.0%
GCAGTTGTGTGTCTCGAGAG+AGG + chr1_1:15178110-15178129 Msa0010150:intron 55.0%
!! TCAGACGGATTGGAATGGGC+GGG - chr1_1:15178237-15178256 None:intergenic 55.0%
CGGAAAATGACCAAACGGGC+GGG - chr1_1:15178301-15178320 None:intergenic 55.0%
CCGGAAAATGACCAAACGGG+CGG - chr1_1:15178302-15178321 None:intergenic 55.0%
!! CCGCCCGTTTGGTCATTTTC+CGG + chr1_1:15178299-15178318 Msa0010150:intron 55.0%
! ACGGGTTTTTGTCCACCCCA+GGG + chr1_1:15178348-15178367 Msa0010150:intron 55.0%
!! CACCTCCTAAAGGTACCCTG+GGG - chr1_1:15178366-15178385 None:intergenic 55.0%
!! CACACCTCCTAAAGGTACCC+TGG - chr1_1:15178368-15178387 None:intergenic 55.0%
GAAGGGGTCTAGCTGCAGTA+AGG + chr1_1:15175403-15175422 Msa0010150:CDS 55.0%
AGCTCACGAGGACGATGATC+CGG - chr1_1:15183510-15183529 None:intergenic 55.0%
TAAGGGGTGGACATACGGGC+GGG + chr1_1:15177446-15177465 Msa0010150:intron 60.0%
GCCCACCGAATGAAACCGAC+GGG + chr1_1:15177493-15177512 Msa0010150:intron 60.0%
!! GCCCGTCGGTTTCATTCGGT+GGG - chr1_1:15177497-15177516 None:intergenic 60.0%
!! AGCCCGTCGGTTTCATTCGG+TGG - chr1_1:15177498-15177517 None:intergenic 60.0%
!! TGGGTGTTGGGTTTGTCGGG+TGG + chr1_1:15177578-15177597 Msa0010150:intron 60.0%
! GTTGTGTACTCGGGCGGGTT+CGG + chr1_1:15178181-15178200 Msa0010150:intron 60.0%
! CGGATTGGAATGGGCGGGTT+CGG - chr1_1:15178232-15178251 None:intergenic 60.0%
GCGGGTAGTTGCAGGTTGTC+GGG - chr1_1:15178283-15178302 None:intergenic 60.0%
GGCGGGTAGTTGCAGGTTGT+CGG - chr1_1:15178284-15178303 None:intergenic 60.0%
!!! TCCGGTTCGGTTTTCCGGGT+TGG + chr1_1:15178317-15178336 Msa0010150:intron 60.0%
CCCAACCCGGAAAACCGAAC+CGG - chr1_1:15178321-15178340 None:intergenic 60.0%
!!! CCGGTTCGGTTTTCCGGGTT+GGG + chr1_1:15178318-15178337 Msa0010150:intron 60.0%
!! TTCGGTTTTCCGGGTTGGGC+CGG + chr1_1:15178322-15178341 Msa0010150:intron 60.0%
! CACGGGTTTTTGTCCACCCC+AGG + chr1_1:15178347-15178366 Msa0010150:intron 60.0%
! GTCCACCCCAGGGTACCTTT+AGG + chr1_1:15178358-15178377 Msa0010150:intron 60.0%
!! CTCCTAAAGGTACCCTGGGG+TGG - chr1_1:15178363-15178382 None:intergenic 60.0%
! CACCCCAGGGTACCTTTAGG+AGG + chr1_1:15178361-15178380 Msa0010150:intron 60.0%
! ACAGTGGCTGTTTCACCGCC+CGG + chr1_1:15178906-15178925 Msa0010150:intron 60.0%
GCTCACGAGGACGATGATCC+GGG - chr1_1:15183509-15183528 None:intergenic 60.0%
CCAGCTGAGCTAAGCTCACG+AGG - chr1_1:15183522-15183541 None:intergenic 60.0%
CCTCGTGAGCTTAGCTCAGC+TGG + chr1_1:15183519-15183538 Msa0010150:intron 60.0%
CCAAACGGGCGGGTAGTTGC+AGG - chr1_1:15178291-15178310 None:intergenic 65.0%
CCTGCAACTACCCGCCCGTT+TGG + chr1_1:15178288-15178307 Msa0010150:intron 65.0%
! TTCCGGGTTGGGCCGGTTCA+CGG + chr1_1:15178329-15178348 Msa0010150:intron 65.0%
GTTTCACCGCCCGGCAACCT+AGG + chr1_1:15178915-15178934 Msa0010150:intron 65.0%
GGTAGCGTGCCTAGGTTGCC+GGG - chr1_1:15178927-15178946 None:intergenic 65.0%
CGGTAGCGTGCCTAGGTTGC+CGG - chr1_1:15178928-15178947 None:intergenic 65.0%
GGTGGACATACGGGCGGGTC+AGG + chr1_1:15177451-15177470 Msa0010150:intron 70.0%
GGACATACGGGCGGGTCAGG+CGG + chr1_1:15177454-15177473 Msa0010150:intron 70.0%
GACATACGGGCGGGTCAGGC+GGG + chr1_1:15177455-15177474 Msa0010150:intron 70.0%
! GGGTTCGGTCACCGCTGGGT+TGG + chr1_1:15178196-15178215 Msa0010150:intron 70.0%
! TCCGGGTTGGGCCGGTTCAC+GGG + chr1_1:15178330-15178349 Msa0010150:intron 70.0%
ACCCGTGAACCGGCCCAACC+CGG - chr1_1:15178334-15178353 None:intergenic 70.0%
AGCGTGCCTAGGTTGCCGGG+CGG - chr1_1:15178924-15178943 None:intergenic 70.0%
CTAGGCACGCTACCGCGCTC+CGG + chr1_1:15178933-15178952 Msa0010150:intron 70.0%
! ACGGGCGGGTCAGGCGGGTT+CGG + chr1_1:15177460-15177479 Msa0010150:intron 75.0%
! GGGCGGGTTCGGTCACCGCT+GGG + chr1_1:15178192-15178211 Msa0010150:intron 75.0%
CGGAGCGCGGTAGCGTGCCT+AGG - chr1_1:15178935-15178954 None:intergenic 75.0%
!! CGGGCGGGTCAGGCGGGTTC+GGG + chr1_1:15177461-15177480 Msa0010150:intron 80.0%
!! CGGGTCAGGCGGGTTCGGGC+TGG + chr1_1:15177465-15177484 Msa0010150:intron 80.0%
!! CGGGCGGGTTCGGTCACCGC+TGG + chr1_1:15178191-15178210 Msa0010150:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 15173633 15184914 15173633 ID=Msa0010150;Name=Msa0010150
chr1_1 mRNA 15173633 15184914 15173633 ID=Msa0010150-mRNA-1;Parent=Msa0010150;Name=Msa0010150-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0.62|0.66|9|0|385
chr1_1 exon 15173633 15173798 15173633 ID=Msa0010150-mRNA-1:exon:5557;Parent=Msa0010150-mRNA-1
chr1_1 exon 15173932 15173987 15173932 ID=Msa0010150-mRNA-1:exon:5558;Parent=Msa0010150-mRNA-1
chr1_1 exon 15175314 15175444 15175314 ID=Msa0010150-mRNA-1:exon:5559;Parent=Msa0010150-mRNA-1
chr1_1 exon 15175583 15175718 15175583 ID=Msa0010150-mRNA-1:exon:5560;Parent=Msa0010150-mRNA-1
chr1_1 exon 15175963 15176106 15175963 ID=Msa0010150-mRNA-1:exon:5561;Parent=Msa0010150-mRNA-1
chr1_1 exon 15181450 15181605 15181450 ID=Msa0010150-mRNA-1:exon:5562;Parent=Msa0010150-mRNA-1
chr1_1 exon 15182615 15182709 15182615 ID=Msa0010150-mRNA-1:exon:5563;Parent=Msa0010150-mRNA-1
chr1_1 exon 15184193 15184328 15184193 ID=Msa0010150-mRNA-1:exon:5564;Parent=Msa0010150-mRNA-1
chr1_1 exon 15184780 15184914 15184780 ID=Msa0010150-mRNA-1:exon:5565;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15173633 15173798 15173633 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15173932 15173987 15173932 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15175314 15175444 15175314 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15175583 15175718 15175583 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15175963 15176106 15175963 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15181450 15181605 15181450 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15182615 15182709 15182615 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15184193 15184328 15184193 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
chr1_1 CDS 15184780 15184914 15184780 ID=Msa0010150-mRNA-1:cds;Parent=Msa0010150-mRNA-1
Gene Sequence

>Msa0010150

ATGAAGAGTGCAAAGAGAGAAATGGAGAAGAAATCAGAGATAAGTTGTTTTATTGAAGAGCTTTCTATGGTTGTGATAGTTAAACCTTCTGGAGAAAATCTTGAAGCTGCTCATATCCCCATTAAGCCTTTCCTCTCTATATATTATTTGGTTCTACAAGTTCTTGATAAAATAGGGCCAACAATGGCTGTTTTGAGACAAGATGTGTATCAAAATATCAAGAGATTGGAACTAATGCATGAATCAAATCCAACAACAAATCTAAATTTAGTTGAAATATTGAAATTGGAAGCAACAGAAGGCAATGCAAAGAAGGGGTCTAGCTGCAGTAAAGCCTTTGTTTGGCTCACAAGGACCCTGGATTTCACCTCGTCGTTGTTACAAATACTATCAAAAGATCCTGAAAAGAAAATGGAGAAAGTAGTTGAAGAATCTTATGAAATTACATTAAAACCATGGCATGGATGGATTTCATCAACTGCTGTTAGAGTGGCTCTAAGATTAGTTCCGGAAAGTAAAACATTCATTGATCTTCTTAAGACTGAAGATGAAGACCGTGACATGCTTAAGCAGAAAATGCAAATATTGGTTTCTCTACTTGTGCCTTTTCTTGAGGATATCCATTGTATCCTAAGTGGTAAGAGAGAAATAATGGAGAAGAAATCAGAGATAAGTTGTGTCATTGAAGAACTTTCTATGGTTGTAATAGTTAAACCAACTGAAGAAAACCATGAAGCTGCTCATATCCCCACCAAGCCTTTTCTCTCTATATGTTATTCAGTTCTGCATAGATTGGAACTAATGCATGAATCAAATCCAACAACGAATCTAAATTTGGTAGAAATATTGAAAATGGAAGCAACGGAAGGCATTGCAAAGAAGGGGACCTTGGATTTTACCTCCTCATTATTACAAATACTATCCAATGATCCTGAAAAGAAAATGGAGAAAGTGGTTGAAGAATCATATGAAGCTACATTAAAACCGTGGCATGGATGGATTTCATCAACTGCTGTCAGGGTGGCCCTAAAATTAGTTCCAGAAAATAAAACATTCATTGATCTCCTTATGACTGAAGATGAAGACCGTGACATGCTTAAGCAGAAAATGCAGATATTGGTTTCTCTACTAGTGCCTTTTCTTGAAGATATTCAC

Protein sequence

>Msa0010150

MKSAKREMEKKSEISCFIEELSMVVIVKPSGENLEAAHIPIKPFLSIYYLVLQVLDKIGPTMAVLRQDVYQNIKRLELMHESNPTTNLNLVEILKLEATEGNAKKGSSCSKAFVWLTRTLDFTSSLLQILSKDPEKKMEKVVEESYEITLKPWHGWISSTAVRVALRLVPESKTFIDLLKTEDEDRDMLKQKMQILVSLLVPFLEDIHCILSGKREIMEKKSEISCVIEELSMVVIVKPTEENHEAAHIPTKPFLSICYSVLHRLELMHESNPTTNLNLVEILKMEATEGIAKKGTLDFTSSLLQILSNDPEKKMEKVVEESYEATLKPWHGWISSTAVRVALKLVPENKTFIDLLMTEDEDRDMLKQKMQILVSLLVPFLEDIH