AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156240 MtrunA17_Chr7g0249621 97.122 695 10 3 1 691 1 689 0.0 1395
Msa1156240 MtrunA17_Chr4g0032631 53.269 413 121 10 103 508 51 398 5.26e-130 395
Msa1156240 MtrunA17_Chr2g0328971 65.878 296 71 4 162 455 92 359 2.37e-127 387
Msa1156240 MtrunA17_Chr8g0343851 50.108 463 177 11 5 447 3 431 2.06e-124 382
Msa1156240 MtrunA17_Chr4g0072291 87.310 197 21 2 254 447 149 344 1.27e-121 372
Msa1156240 MtrunA17_Chr3g0135161 68.635 271 73 5 192 460 247 507 2.22e-116 363
Msa1156240 MtrunA17_Chr1g0152161 51.961 408 137 9 65 463 158 515 8.24e-116 362
Msa1156240 MtrunA17_Chr4g0054351 77.073 205 44 1 253 454 299 503 2.46e-106 337
Msa1156240 MtrunA17_Chr5g0412151 76.549 226 38 4 227 449 198 411 5.61e-106 332
Msa1156240 MtrunA17_Chr5g0400871 76.263 198 44 1 260 454 245 442 4.42e-104 328
Msa1156240 MtrunA17_Chr4g0073521 65.979 194 60 2 235 428 24 211 2.69e-84 270
Msa1156240 MtrunA17_Chr6g0452911 59.624 213 74 2 226 428 25 235 4.22e-79 257
Msa1156240 MtrunA17_Chr7g0216601 69.231 169 49 1 263 428 64 232 8.02e-78 254
Msa1156240 MtrunA17_Chr8g0355191 67.630 173 56 0 263 435 54 226 3.46e-76 250
Msa1156240 MtrunA17_Chr8g0367311 74.510 153 38 1 301 453 22 173 6.04e-75 241
Msa1156240 MtrunA17_Chr4g0002011 67.039 179 53 2 253 428 28 203 1.73e-71 235
Msa1156240 MtrunA17_Chr8g0355181 68.072 166 53 0 263 428 55 220 7.22e-70 233
Msa1156240 MtrunA17_Chr8g0362541 60.914 197 63 1 246 428 51 247 9.39e-69 231
Msa1156240 MtrunA17_Chr2g0305821 62.319 138 48 2 236 373 23 156 5.57e-45 158
Msa1156240 MtrunA17_Chr7g0257361 61.832 131 42 2 262 389 55 180 1.22e-39 151
Msa1156240 MtrunA17_Chr5g0401891 48.990 198 86 5 244 437 128 314 1.08e-38 150
Msa1156240 MtrunA17_Chr4g0053181 52.121 165 65 4 268 429 177 330 2.68e-38 149
Msa1156240 MtrunA17_Chr7g0263581 43.719 199 96 4 268 458 140 330 6.06e-38 147
Msa1156240 MtrunA17_Chr4g0030191 45.556 180 82 5 268 444 132 298 2.46e-35 139
Msa1156240 MtrunA17_Chr2g0325911 45.455 165 61 5 268 429 135 273 1.20e-28 119
Msa1156240 MtrunA17_Chr2g0305831 74.576 59 15 0 370 428 1 59 2.83e-24 101
Msa1156240 MtrunA17_Chr8g0367321 63.492 63 20 1 243 302 131 193 1.31e-20 90.5
Msa1156240 MtrunA17_Chr3g0126151 43.158 95 53 1 312 406 47 140 1.82e-20 88.2
Msa1156240 MtrunA17_Chr1g0170761 39.024 123 61 4 264 383 134 245 1.18e-12 70.1
Msa1156240 MtrunA17_Chr5g0432821 44.304 79 43 1 357 435 114 191 6.23e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156240 AT5G17430.1 49.910 555 168 20 1 534 1 466 1.50e-141 426
Msa1156240 AT5G17430.2 59.635 384 89 10 167 534 71 404 5.65e-134 405
Msa1156240 AT1G51190.1 61.207 348 102 9 112 455 64 382 4.50e-129 394
Msa1156240 AT3G20840.1 72.388 268 55 4 192 455 121 373 9.04e-129 393
Msa1156240 AT5G57390.2 79.111 225 33 4 223 443 49 263 8.01e-121 368
Msa1156240 AT5G57390.1 79.111 225 33 4 223 443 167 381 1.10e-119 369
Msa1156240 AT1G72570.1 57.012 328 106 7 140 446 92 405 1.97e-113 348
Msa1156240 AT4G37750.1 51.880 399 122 10 95 447 92 466 2.25e-110 345
Msa1156240 AT5G10510.2 85.641 195 27 1 255 449 218 411 4.15e-108 338
Msa1156240 AT5G10510.7 84.343 198 27 2 255 449 218 414 6.26e-106 333
Msa1156240 AT5G10510.5 84.343 198 27 2 255 449 218 414 6.26e-106 333
Msa1156240 AT5G10510.1 84.343 198 27 2 255 449 241 437 9.22e-106 333
Msa1156240 AT5G10510.6 84.343 198 27 2 255 449 256 452 1.21e-105 333
Msa1156240 AT5G10510.4 84.343 198 27 2 255 449 256 452 1.21e-105 333
Msa1156240 AT5G65510.2 80.102 196 35 2 255 447 219 413 5.37e-102 321
Msa1156240 AT5G65510.1 80.102 196 35 2 255 447 219 413 5.37e-102 321
Msa1156240 AT5G65510.4 80.102 196 35 2 255 447 161 355 5.53e-102 319
Msa1156240 AT5G10510.3 76.147 218 28 2 255 449 256 472 2.14e-101 323
Msa1156240 AT5G65510.3 84.932 146 19 1 255 397 161 306 1.10e-86 275
Msa1156240 AT3G54320.3 63.736 182 62 2 263 441 61 241 8.21e-67 226
Msa1156240 AT3G54320.1 63.736 182 62 2 263 441 61 241 9.22e-67 226
Msa1156240 AT1G16060.1 63.731 193 64 2 242 428 30 222 2.23e-63 214
Msa1156240 AT1G79700.2 69.822 169 48 1 263 428 48 216 3.04e-63 213
Msa1156240 AT1G79700.1 65.680 169 45 2 263 428 48 206 8.82e-56 192
Msa1156240 AT3G54320.4 69.531 128 39 0 301 428 36 163 1.25e-48 175
Msa1156240 AT3G54320.5 69.531 128 39 0 301 428 36 163 1.25e-48 175
Msa1156240 AT1G79700.4 70.312 128 38 0 301 428 7 134 1.62e-44 159
Msa1156240 AT1G79700.3 70.312 128 38 0 301 428 13 140 1.97e-44 159
Msa1156240 AT1G16060.3 66.418 134 45 0 295 428 19 152 9.55e-43 156
Msa1156240 AT4G36920.1 49.495 198 85 5 247 440 110 296 5.32e-40 152
Msa1156240 AT4G36920.2 49.495 198 85 5 247 440 110 296 5.32e-40 152
Msa1156240 AT2G41710.1 60.606 132 44 2 260 388 63 189 5.13e-39 149
Msa1156240 AT2G41710.4 60.606 132 44 2 260 388 63 189 8.57e-39 150
Msa1156240 AT2G41710.2 58.394 137 44 3 260 388 63 194 8.70e-37 143
Msa1156240 AT2G28550.3 49.390 164 69 4 268 428 154 306 6.45e-36 142
Msa1156240 AT5G67180.2 47.701 174 77 4 268 438 97 259 1.10e-35 137
Msa1156240 AT5G67180.1 47.701 174 77 4 268 438 97 259 4.90e-35 136
Msa1156240 AT5G67180.3 46.512 172 84 3 268 439 97 260 5.30e-35 134
Msa1156240 AT2G41710.3 47.904 167 44 3 260 388 63 224 1.34e-32 132
Msa1156240 AT1G16060.2 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1156240 AT1G16060.4 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1156240 AT1G16060.6 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1156240 AT1G16060.5 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1156240 AT3G54320.2 63.366 101 36 1 341 441 1 100 8.96e-31 122
Msa1156240 AT2G28550.4 47.143 140 60 4 268 404 154 282 4.92e-28 116
Msa1156240 AT2G28550.1 45.122 164 61 5 268 428 154 291 5.57e-28 118
Msa1156240 AT5G67180.4 44.366 142 71 3 268 409 97 230 5.46e-26 108
Msa1156240 AT2G28550.2 46.825 126 53 4 268 390 154 268 1.35e-23 101
Msa1156240 AT2G28550.6 46.825 126 53 4 268 390 154 268 1.35e-23 101
Msa1156240 AT2G39250.2 41.071 112 53 3 268 376 109 210 3.05e-21 94.0
Msa1156240 AT2G28550.5 45.312 128 54 2 301 428 14 125 3.86e-21 94.7
Msa1156240 AT2G39250.1 41.071 112 53 3 268 376 109 210 7.13e-21 94.7
Msa1156240 AT5G60120.6 38.509 161 70 6 264 421 157 291 3.03e-17 85.5
Msa1156240 AT5G60120.1 38.509 161 70 6 264 421 157 291 3.84e-17 85.5
Msa1156240 AT5G60120.2 38.509 161 70 6 264 421 157 291 5.23e-17 85.1
Msa1156240 AT5G60120.4 43.411 129 59 4 264 389 157 274 6.63e-17 84.0
Msa1156240 AT5G60120.3 43.411 129 59 4 264 389 157 274 6.63e-17 84.0
Msa1156240 AT5G60120.5 43.411 129 59 4 264 389 157 274 6.63e-17 84.0
Msa1156240 AT1G16060.7 77.193 57 13 0 372 428 10 66 1.02e-16 79.3
Msa1156240 AT3G54990.2 43.396 106 47 3 268 370 123 218 4.98e-15 75.9
Msa1156240 AT3G54990.1 43.396 106 47 3 268 370 123 218 1.28e-14 76.3

Find 149 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGCTTGTTCTGTTAAA+TGG 0.095178 7_4:+44503144 None:intergenic
TATTGTTGCTTCTTTGATTT+TGG 0.129662 7_4:+44502742 None:intergenic
GGATCTAATTCTGTTGTTTA+TGG 0.168865 7_4:-44502837 Msa1156240:CDS
GGTTATTGTTGTTCATATTT+TGG 0.176947 7_4:+44505654 None:intergenic
CAAAGAAGCAACAATAATTT+TGG 0.188537 7_4:-44502735 Msa1156240:CDS
CAAACGGTGGCTTCTCGTTT+TGG 0.188561 7_4:-44506191 Msa1156240:CDS
CCTTGTTACTCCTCGGTAAA+TGG 0.210629 7_4:+44503980 None:intergenic
CCTTGTTACACCACGGTAAA+TGG 0.220419 7_4:+44505157 None:intergenic
ATTTGGCAGCACTAAAATAT+TGG 0.237264 7_4:-44504552 Msa1156240:CDS
AACAATACTCACAATTTCTT+TGG 0.250983 7_4:-44502909 Msa1156240:CDS
CTGTTGATCAAGGATCAAAT+TGG 0.252268 7_4:-44502605 Msa1156240:CDS
TGCATTTGTTGCTGCATAAA+TGG 0.259450 7_4:+44503127 None:intergenic
TCAGAATCTGAGATTTCATT+AGG 0.264425 7_4:+44506161 None:intergenic
GGTGGAGATCATGGTGGTTA+TGG 0.278181 7_4:-44502813 Msa1156240:CDS
CAACAACCAAAACCTACTAT+TGG 0.300403 7_4:-44505693 Msa1156240:CDS
TTTGGCAGCACTAAAATATT+GGG 0.305185 7_4:-44504551 Msa1156240:CDS
AGAAAATCCATTGATACATT+TGG 0.320046 7_4:-44505191 Msa1156240:CDS
CAGCAACAAATGCATCTAAT+TGG 0.322210 7_4:-44503118 Msa1156240:CDS
GCTTCCATGGATAATAGTTC+TGG 0.326230 7_4:-44502858 Msa1156240:CDS
TATGGTCTTGCTCAGTTCTA+TGG 0.330974 7_4:+44503186 None:intergenic
ATGGCCTCTATGAACTTGTT+AGG 0.336794 7_4:-44506257 Msa1156240:CDS
GAGAGTGAGATTAAGGGATT+TGG 0.337891 7_4:-44502711 Msa1156240:CDS
TAATGTGCTGCTCTCAAGTA+TGG 0.346258 7_4:+44503283 None:intergenic
TGTGTGGAAAGCTTCATAAA+TGG 0.358443 7_4:+44506061 None:intergenic
CGAGCTTTGGTTGTGCTTGT+TGG 0.361890 7_4:+44505633 None:intergenic
AATCATGTGAATGTTGATAT+TGG 0.362393 7_4:-44503209 Msa1156240:CDS
GATATTCATCAACTACAGTT+AGG 0.380988 7_4:-44502942 Msa1156240:CDS
CACTTTCAACTACACTGGTT+TGG 0.382624 7_4:+44505222 None:intergenic
ATGTTCCCAATAGTAGGTTT+TGG 0.383308 7_4:+44505687 None:intergenic
AAAGCTTCATAAATGGAAAA+AGG 0.383369 7_4:+44506068 None:intergenic
GCTAGGATTGGAAGAGTTGC+AGG 0.384571 7_4:-44503644 Msa1156240:CDS
CAGAATCTGAGATTTCATTA+GGG 0.392363 7_4:+44506162 None:intergenic
CAACTACAGAATTATCCTTA+TGG 0.402202 7_4:-44503038 Msa1156240:CDS
ACAAGTAACAATAACTCAAT+AGG 0.403671 7_4:-44505470 Msa1156240:CDS
CTTGCTGCTTGTGCATGATA+AGG 0.405059 7_4:+44502657 None:intergenic
AATGGCTTGTTCTGTTAAAT+GGG 0.406601 7_4:+44503145 None:intergenic
AACAACCAAAACCTACTATT+GGG 0.407661 7_4:-44505692 Msa1156240:CDS
GAATTGATTGAAGGCATAGA+TGG 0.410587 7_4:-44504973 Msa1156240:intron
GAAGATATGAAGCTCACCTT+TGG 0.414893 7_4:-44504946 Msa1156240:CDS
ACCGTTTGATCTTGAGTTGA+TGG 0.416817 7_4:+44506206 None:intergenic
TTTGGTGAGAGTGAGATTAA+GGG 0.417815 7_4:-44502717 Msa1156240:CDS
GGTGACGGTGGTGGTGGTGA+TGG 0.418439 7_4:-44505497 Msa1156240:CDS
CCAGCGCCACAGGATGCTTC+CGG 0.419126 7_4:+44505521 None:intergenic
GTTTATGGTGGTGGAGATCA+TGG 0.419499 7_4:-44502822 Msa1156240:CDS
CGCTTTGCAGCACCACCAAT+TGG 0.426039 7_4:+44503260 None:intergenic
GACATCATCAACATGGTAGA+TGG 0.429729 7_4:-44503670 Msa1156240:CDS
GTACTCAAACTCAAAAGCTT+TGG 0.432762 7_4:-44503016 Msa1156240:CDS
CATGGTGGTTATGGAGGAAA+TGG 0.438514 7_4:-44502804 Msa1156240:CDS
CCATCATTTGCAATAGCCAT+TGG 0.439632 7_4:+44502768 None:intergenic
GCTGGTGGTGACGGTGGTGG+TGG 0.442442 7_4:-44505503 Msa1156240:CDS
AATTCTGTTGTTTATGGTGG+TGG 0.443451 7_4:-44502831 Msa1156240:CDS
GGCGCTGGTGGTGACGGTGG+TGG 0.445823 7_4:-44505506 Msa1156240:CDS
AAGATATGAAGCTCACCTTT+GGG 0.446101 7_4:-44504945 Msa1156240:CDS
GGCAGCTAGAGCCTATGATT+TGG 0.446802 7_4:-44504569 Msa1156240:CDS
ATTCTGTAGTTGCATGTTGT+TGG 0.446869 7_4:+44503049 None:intergenic
TCTTTGTCCAAATGTATCAA+TGG 0.448794 7_4:+44505184 None:intergenic
CCGGAAGCATCCTGTGGCGC+TGG 0.451035 7_4:-44505521 Msa1156240:CDS
TCCTGTGGCGCTGGTGGTGA+CGG 0.457671 7_4:-44505512 Msa1156240:CDS
ATCTAGTACAACTGCAGTTG+TGG 0.462528 7_4:+44505250 None:intergenic
ATCTCAGATTCTGATGTTCA+AGG 0.465843 7_4:-44506152 Msa1156240:CDS
AGGTTATGACAAAGAAGAAA+AGG 0.471219 7_4:-44504590 Msa1156240:CDS
AGAGAGACATTGGTAGTCCT+TGG 0.480632 7_4:+44502555 None:intergenic
TGTTGATCAAGGATCAAATT+GGG 0.482329 7_4:-44502604 Msa1156240:CDS
TTAGCTTACTGAAAGTTCCT+AGG 0.482351 7_4:+44503606 None:intergenic
GAGAGCAGCACATTACCAAT+TGG 0.487985 7_4:-44503275 Msa1156240:CDS
TTTACCGACCATCATGAATA+CGG 0.492970 7_4:-44505587 Msa1156240:CDS
CCAATGGCTATTGCAAATGA+TGG 0.493694 7_4:-44502768 Msa1156240:CDS
CTGATGAGGTGGAAGGTGTA+AGG 0.495711 7_4:+44505544 None:intergenic
AACAACATTCACACCACTCA+AGG 0.496373 7_4:-44506035 Msa1156240:intron
GATTGAAGGCATAGATGGAC+AGG 0.498328 7_4:-44504968 Msa1156240:intron
TGCATGATGTTCCCAATAGT+AGG 0.502983 7_4:+44505681 None:intergenic
CAGGATGCTTCCGGCTGATG+AGG 0.503669 7_4:+44505530 None:intergenic
AACAACAATAACAATGAAAG+TGG 0.507141 7_4:-44505395 Msa1156240:CDS
GGTAGATGGCAAGCTAGGAT+TGG 0.507927 7_4:-44503656 Msa1156240:CDS
TTTACAAAATATCATGAGCA+TGG 0.510195 7_4:-44502886 Msa1156240:CDS
AGGAGGACAAAGAGAGACAT+TGG 0.511641 7_4:+44502545 None:intergenic
GAGCATGGATTCTGCTTCCA+TGG 0.513611 7_4:-44502871 Msa1156240:CDS
GTTGATGGATGTTGTTCTTG+TGG 0.519936 7_4:+44506221 None:intergenic
TCTAATTCTGTTGTTTATGG+TGG 0.520329 7_4:-44502834 Msa1156240:CDS
TCCATCAACTCAAGATCAAA+CGG 0.521228 7_4:-44506207 Msa1156240:CDS
CACTCAAGAAGAGGCAGCAG+AGG 0.522745 7_4:-44503384 Msa1156240:CDS
TGACTGTGAGCCAGTACTCA+TGG 0.522920 7_4:+44505346 None:intergenic
CTATCACTTTCCATGAGTAC+TGG 0.523226 7_4:-44505356 Msa1156240:CDS
ACCGTCACCACCAGCGCCAC+AGG 0.525901 7_4:+44505511 None:intergenic
GGTGGTTATGGAGGAAATGG+TGG 0.526912 7_4:-44502801 Msa1156240:CDS
TCTAGTACAACTGCAGTTGT+GGG 0.529325 7_4:+44505251 None:intergenic
ATATTCATCAACTACAGTTA+GGG 0.529923 7_4:-44502941 Msa1156240:CDS
CCATTTACCGTGGTGTAACA+AGG 0.530421 7_4:-44505157 Msa1156240:intron
CAACAATTATCTGTTGATCA+AGG 0.532166 7_4:-44502615 Msa1156240:CDS
TTGGCATTGTAATGATGATG+TGG 0.537975 7_4:+44503068 None:intergenic
GTAGTCCTTGGAGCAAGTGT+TGG 0.539572 7_4:+44502567 None:intergenic
GATGATGTGGTTGTTGCTGT+TGG 0.542188 7_4:+44503081 None:intergenic
AAGTGTTGTTGATGATGCTA+TGG 0.542471 7_4:+44503168 None:intergenic
ATCACATTTGCATTGAGAAG+AGG 0.545455 7_4:+44505311 None:intergenic
CACAGCACTTTCAACTACAC+TGG 0.549624 7_4:+44505217 None:intergenic
GGAGATCATGGTGGTTATGG+AGG 0.550320 7_4:-44502810 Msa1156240:CDS
GCAAGTGTTGGAATAGCAGT+TGG 0.551281 7_4:+44502579 None:intergenic
GACAATAGTTGTAGAAGAGA+GGG 0.552085 7_4:-44504923 Msa1156240:CDS
AGGGGCAGACTCGCAAAGGA+AGG 0.556032 7_4:-44504904 Msa1156240:CDS
TGTGAATGTTGTTATTTGTG+TGG 0.561378 7_4:+44506045 None:intergenic
GAGTGGTGAGATTTCATCAT+CGG 0.562716 7_4:-44505288 Msa1156240:CDS
GATGCTTCCGGCTGATGAGG+TGG 0.563493 7_4:+44505533 None:intergenic
AAATGTACCTTGTTACTCCT+CGG 0.570528 7_4:+44503973 None:intergenic
GAAGCATCCTGTGGCGCTGG+TGG 0.570788 7_4:-44505518 Msa1156240:CDS
TTCTACAACTATTGTCCCAA+AGG 0.572108 7_4:+44504930 None:intergenic
ACACCTTCCACCTCATCAGC+CGG 0.572285 7_4:-44505540 Msa1156240:CDS
AGATCCAGAACTATTATCCA+TGG 0.572634 7_4:+44502854 None:intergenic
AACATGGTAGATGGCAAGCT+AGG 0.575560 7_4:-44503661 Msa1156240:CDS
TATTCATGCAACAAAGTGAA+AGG 0.582944 7_4:+44502525 None:intergenic
GGACAATAGTTGTAGAAGAG+AGG 0.583749 7_4:-44504924 Msa1156240:CDS
GGCAGCAGAGGCATATGATG+TGG 0.586081 7_4:-44503372 Msa1156240:CDS
TGCAAAGCGTTTAAAAGACA+TGG 0.586229 7_4:-44503246 Msa1156240:CDS
GAAACCTAACAAGTTCATAG+AGG 0.589571 7_4:+44506253 None:intergenic
AGCAGCACATTACCAATTGG+TGG 0.591768 7_4:-44503272 Msa1156240:CDS
CCAAAGCTCGAAAACTTCCT+CGG 0.593046 7_4:-44505620 Msa1156240:CDS
AGAGAGGGGCAGACTCGCAA+AGG 0.594516 7_4:-44504908 Msa1156240:CDS
CTATTCCAACACTTGCTCCA+AGG 0.594901 7_4:-44502572 Msa1156240:CDS
AAGAAATGAAGCACATGACA+AGG 0.607294 7_4:-44504171 Msa1156240:CDS
TGTGGCGCTGGTGGTGACGG+TGG 0.610630 7_4:-44505509 Msa1156240:CDS
TATTGACACAGGAAAAGTAG+TGG 0.611077 7_4:-44504020 Msa1156240:intron
TTGGCAGCACTAAAATATTG+GGG 0.612951 7_4:-44504550 Msa1156240:CDS
AGTATGTTGCGTCATTGAGA+AGG 0.616585 7_4:-44504144 Msa1156240:intron
TGCTACCACCGTATTCATGA+TGG 0.619805 7_4:+44505579 None:intergenic
TGATCAACAGATAATTGTTG+TGG 0.624333 7_4:+44502618 None:intergenic
CCATTTACCGAGGAGTAACA+AGG 0.628541 7_4:-44503980 Msa1156240:intron
CTTATCATGCACAAGCAGCA+AGG 0.629083 7_4:-44502656 Msa1156240:CDS
CATCAGCCGGAAGCATCCTG+TGG 0.636585 7_4:-44505527 Msa1156240:CDS
CTTCCGGCTGATGAGGTGGA+AGG 0.639887 7_4:+44505537 None:intergenic
TGGTGGATATATGATTCCAA+TGG 0.641072 7_4:-44502784 Msa1156240:CDS
GTGGCAGCTATAAAATTCAG+AGG 0.650585 7_4:-44503353 Msa1156240:CDS
CAGACTCGCAAAGGAAGGCA+AGG 0.652221 7_4:-44504899 Msa1156240:intron
CGTGGTGCATCCATTTACCG+AGG 0.653077 7_4:-44503990 Msa1156240:CDS
TATGGTGGTGGAGATCATGG+TGG 0.659784 7_4:-44502819 Msa1156240:CDS
TCATGCAACAAAGTGAAAGG+AGG 0.660215 7_4:+44502528 None:intergenic
ACAATAGTTGTAGAAGAGAG+GGG 0.663901 7_4:-44504922 Msa1156240:CDS
GAAAGGTTGAGTGAATGATG+AGG 0.665325 7_4:+44506095 None:intergenic
GGCAACAAAGATCTCTACCT+AGG 0.670359 7_4:-44503623 Msa1156240:CDS
GTTTATCTATGATCAAAACA+TGG 0.674927 7_4:-44505448 Msa1156240:CDS
CTCAATGCAAATGTGATGAG+TGG 0.677659 7_4:-44505305 Msa1156240:CDS
AAGCTCGAAAACTTCCTCGG+TGG 0.682363 7_4:-44505617 Msa1156240:CDS
CAAAGAACTTCCATTTACCG+TGG 0.683820 7_4:-44505167 Msa1156240:CDS
TAGAGAACCTTGTTACACCA+CGG 0.689510 7_4:+44505150 None:intergenic
AGTACAACTGCAGTTGTGGG+TGG 0.690635 7_4:+44505254 None:intergenic
GATTGCAGACATCATCAACA+TGG 0.696140 7_4:-44503677 Msa1156240:intron
GAAAGAAATGAAACCTTGAG+TGG 0.697848 7_4:+44506022 None:intergenic
ACCACCGTATTCATGATGGT+CGG 0.701815 7_4:+44505583 None:intergenic
ACCGACCATCATGAATACGG+TGG 0.718644 7_4:-44505584 Msa1156240:CDS
ATCAACTCAAGATCAAACGG+TGG 0.736375 7_4:-44506204 Msa1156240:CDS
CGGTAAAAGAGTGTCCACCG+AGG 0.771614 7_4:+44505603 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAGTATACATTA+GGG + chr7_4:44503929-44503948 None:intergenic 10.0%
!!! AAAAAAAAAAAGTATACATT+AGG + chr7_4:44503930-44503949 None:intergenic 10.0%
!! GAAAAAAAATTACTAGTATA+TGG - chr7_4:44502814-44502833 Msa1156240:CDS 15.0%
!! AATAGATAAGAAGAAAAATA+AGG + chr7_4:44502856-44502875 None:intergenic 15.0%
!!! ATCTAAAAATATTTGAGTTT+TGG + chr7_4:44503019-44503038 None:intergenic 15.0%
!!! AACTTTTTATTTTTTCAGAT+TGG - chr7_4:44503054-44503073 Msa1156240:CDS 15.0%
!!! ATAAGATTCTTTGAAATAAT+TGG - chr7_4:44504095-44504114 Msa1156240:intron 15.0%
!! TATATTATCACAATGAATTA+AGG - chr7_4:44504318-44504337 Msa1156240:intron 15.0%
!! ATTAAATTCGATTAAAATTG+TGG - chr7_4:44505013-44505032 Msa1156240:intron 15.0%
!! AAATATATATACTATTGGAT+TGG + chr7_4:44505309-44505328 None:intergenic 15.0%
!!! ATTTTTGCTTTATTTATATC+TGG + chr7_4:44505342-44505361 None:intergenic 15.0%
!!! TTTTTCTTGAGGAAATTAAT+TGG + chr7_4:44502800-44502819 None:intergenic 20.0%
!!! ACTAGTAATTTTTTTTCTTG+AGG + chr7_4:44502811-44502830 None:intergenic 20.0%
!!! TTTTATTTTTTCAGATTGGA+AGG - chr7_4:44503058-44503077 Msa1156240:CDS 20.0%
!!! AAGTTCTTTTTTCTTCAAAA+TGG + chr7_4:44503731-44503750 None:intergenic 20.0%
!!! ATTTTGAAGAAAAAAGAACT+TGG - chr7_4:44503730-44503749 Msa1156240:intron 20.0%
!!! GGAAATTAATTTACTTTTCA+TGG + chr7_4:44504439-44504458 None:intergenic 20.0%
!! AAATTAATTTCCTCATTTGA+TGG - chr7_4:44504447-44504466 Msa1156240:intron 20.0%
!! TATAAAGCTTTGCATTATAA+GGG + chr7_4:44504496-44504515 None:intergenic 20.0%
!! ATATAAAGCTTTGCATTATA+AGG + chr7_4:44504497-44504516 None:intergenic 20.0%
!! TGATAACAACTTATTGATAT+TGG - chr7_4:44504524-44504543 Msa1156240:intron 20.0%
!! TTAATTGATATTATTGACAC+AGG - chr7_4:44504750-44504769 Msa1156240:intron 20.0%
!!! AATTGCTATTGAAATAACTT+CGG - chr7_4:44504949-44504968 Msa1156240:CDS 20.0%
!! TTTATCTATGTTAAAATGTG+AGG + chr7_4:44505247-44505266 None:intergenic 20.0%
!!! AAGTGATCATCAATTATTTT+AGG - chr7_4:44505374-44505393 Msa1156240:CDS 20.0%
!!! TTTGGTTATGAAAATGTTTT+TGG - chr7_4:44506088-44506107 Msa1156240:CDS 20.0%
!!! TTGGTTATGAAAATGTTTTT+GGG - chr7_4:44506089-44506108 Msa1156240:CDS 20.0%
! AAAGCTTCATAAATGGAAAA+AGG + chr7_4:44502716-44502735 None:intergenic 25.0%
!!! GGTTATTGTTGTTCATATTT+TGG + chr7_4:44503130-44503149 None:intergenic 25.0%
! ACAAGTAACAATAACTCAAT+AGG - chr7_4:44503311-44503330 Msa1156240:CDS 25.0%
! GTTTATCTATGATCAAAACA+TGG - chr7_4:44503333-44503352 Msa1156240:CDS 25.0%
!!! TTATTGTTGTTGTTGTTTTC+TGG + chr7_4:44503377-44503396 None:intergenic 25.0%
! AACAACAATAACAATGAAAG+TGG - chr7_4:44503386-44503405 Msa1156240:CDS 25.0%
!!! AATGTATCAATGGATTTTCT+AGG + chr7_4:44503590-44503609 None:intergenic 25.0%
! AGAAAATCCATTGATACATT+TGG - chr7_4:44503590-44503609 Msa1156240:intron 25.0%
! ATGGCAAAGAAAATACTTAT+AGG + chr7_4:44503712-44503731 None:intergenic 25.0%
!!! TATTTTTTTGAGATGCATGA+TGG - chr7_4:44503770-44503789 Msa1156240:intron 25.0%
!!! GTGTTAAAATTTGTTGATGT+TGG - chr7_4:44504150-44504169 Msa1156240:CDS 25.0%
!!! AATTTACTTTTCATGGTACA+TGG + chr7_4:44504432-44504451 None:intergenic 25.0%
! ATAAAGCTTTGCATTATAAG+GGG + chr7_4:44504495-44504514 None:intergenic 25.0%
! CAAATTAGTAATAGTTCATG+TGG + chr7_4:44504681-44504700 None:intergenic 25.0%
! AATTCATGCTCAATAAACTA+AGG + chr7_4:44504713-44504732 None:intergenic 25.0%
!!! CTTTACTATTGGTCTTTATT+TGG + chr7_4:44504836-44504855 None:intergenic 25.0%
! AATCATGTGAATGTTGATAT+TGG - chr7_4:44505572-44505591 Msa1156240:CDS 25.0%
! ATATTCATCAACTACAGTTA+GGG - chr7_4:44505840-44505859 Msa1156240:intron 25.0%
! AACAATACTCACAATTTCTT+TGG - chr7_4:44505872-44505891 Msa1156240:intron 25.0%
! TTTACAAAATATCATGAGCA+TGG - chr7_4:44505895-44505914 Msa1156240:intron 25.0%
!!! TATTGTTGCTTCTTTGATTT+TGG + chr7_4:44506042-44506061 None:intergenic 25.0%
!! CAAAGAAGCAACAATAATTT+TGG - chr7_4:44506046-44506065 Msa1156240:CDS 25.0%
! CAGAATCTGAGATTTCATTA+GGG + chr7_4:44502622-44502641 None:intergenic 30.0%
! TCAGAATCTGAGATTTCATT+AGG + chr7_4:44502623-44502642 None:intergenic 30.0%
AAATGGAAAAAGGATGAGAA+AGG + chr7_4:44502706-44502725 None:intergenic 30.0%
!! TGTGAATGTTGTTATTTGTG+TGG + chr7_4:44502739-44502758 None:intergenic 30.0%
! ATTAATTGGTGAAGAGGTAT+TGG + chr7_4:44502786-44502805 None:intergenic 30.0%
!! CTTATCTATTTCTAGCTACA+AGG - chr7_4:44502866-44502885 Msa1156240:CDS 30.0%
AACAACCAAAACCTACTATT+GGG - chr7_4:44503089-44503108 Msa1156240:CDS 30.0%
TCTTTGTCCAAATGTATCAA+TGG + chr7_4:44503600-44503619 None:intergenic 30.0%
!!! TAGGGTTTTGAATTGATTGA+AGG - chr7_4:44503799-44503818 Msa1156240:intron 30.0%
ATGAAGACAATAGAGGAAAA+GGG + chr7_4:44504037-44504056 None:intergenic 30.0%
TACATTGATGAAGACAATAG+AGG + chr7_4:44504044-44504063 None:intergenic 30.0%
ATTGTCTTCATCAATGTACA+TGG - chr7_4:44504046-44504065 Msa1156240:intron 30.0%
! GTTGGTTTATGTACTATTGT+AGG - chr7_4:44504168-44504187 Msa1156240:CDS 30.0%
AGGTTATGACAAAGAAGAAA+AGG - chr7_4:44504191-44504210 Msa1156240:CDS 30.0%
ATTTGGCAGCACTAAAATAT+TGG - chr7_4:44504229-44504248 Msa1156240:intron 30.0%
TTTGGCAGCACTAAAATATT+GGG - chr7_4:44504230-44504249 Msa1156240:intron 30.0%
CAATGAATTAAGGAACATGT+TGG - chr7_4:44504328-44504347 Msa1156240:intron 30.0%
TAGCCATTATGAAAAAGAAG+TGG - chr7_4:44504587-44504606 Msa1156240:CDS 30.0%
!! CTTCCACTTCTTTTTCATAA+TGG + chr7_4:44504593-44504612 None:intergenic 30.0%
ACACACACAAACTTTACTAT+TGG + chr7_4:44504847-44504866 None:intergenic 30.0%
GTGGACATTTATGATTTCAT+GGG + chr7_4:44504901-44504920 None:intergenic 30.0%
AGTGGACATTTATGATTTCA+TGG + chr7_4:44504902-44504921 None:intergenic 30.0%
TCTATGTTAAAATGTGAGGT+AGG + chr7_4:44505243-44505262 None:intergenic 30.0%
!! AATGGCTTGTTCTGTTAAAT+GGG + chr7_4:44505639-44505658 None:intergenic 30.0%
!! AAATGGCTTGTTCTGTTAAA+TGG + chr7_4:44505640-44505659 None:intergenic 30.0%
CAACTACAGAATTATCCTTA+TGG - chr7_4:44505743-44505762 Msa1156240:intron 30.0%
!!! TTTTGAGTTTGAGTACCATA+AGG + chr7_4:44505761-44505780 None:intergenic 30.0%
GATATTCATCAACTACAGTT+AGG - chr7_4:44505839-44505858 Msa1156240:intron 30.0%
! GGATCTAATTCTGTTGTTTA+TGG - chr7_4:44505944-44505963 Msa1156240:intron 30.0%
! TCTAATTCTGTTGTTTATGG+TGG - chr7_4:44505947-44505966 Msa1156240:intron 30.0%
TGATCAACAGATAATTGTTG+TGG + chr7_4:44506166-44506185 None:intergenic 30.0%
CAACAATTATCTGTTGATCA+AGG - chr7_4:44506166-44506185 Msa1156240:CDS 30.0%
TGTTGATCAAGGATCAAATT+GGG - chr7_4:44506177-44506196 Msa1156240:CDS 30.0%
TATTCATGCAACAAAGTGAA+AGG + chr7_4:44506259-44506278 None:intergenic 30.0%
GAAACCTAACAAGTTCATAG+AGG + chr7_4:44502531-44502550 None:intergenic 35.0%
TCCATCAACTCAAGATCAAA+CGG - chr7_4:44502574-44502593 Msa1156240:CDS 35.0%
ATCTCAGATTCTGATGTTCA+AGG - chr7_4:44502629-44502648 Msa1156240:CDS 35.0%
TGTGTGGAAAGCTTCATAAA+TGG + chr7_4:44502723-44502742 None:intergenic 35.0%
GAAAGAAATGAAACCTTGAG+TGG + chr7_4:44502762-44502781 None:intergenic 35.0%
GAGGAAATTAATTGGTGAAG+AGG + chr7_4:44502792-44502811 None:intergenic 35.0%
TTCTCATTAAGTGCTAACCA+AGG + chr7_4:44502897-44502916 None:intergenic 35.0%
CAACAACCAAAACCTACTAT+TGG - chr7_4:44503088-44503107 Msa1156240:CDS 35.0%
! ATGTTCCCAATAGTAGGTTT+TGG + chr7_4:44503097-44503116 None:intergenic 35.0%
TTTACCGACCATCATGAATA+CGG - chr7_4:44503194-44503213 Msa1156240:CDS 35.0%
!!! TTGTTGTTGTTGTTTTCTGG+TGG + chr7_4:44503374-44503393 None:intergenic 35.0%
ATCACATTTGCATTGAGAAG+AGG + chr7_4:44503473-44503492 None:intergenic 35.0%
! GAATTGATTGAAGGCATAGA+TGG - chr7_4:44503808-44503827 Msa1156240:intron 35.0%
AAGATATGAAGCTCACCTTT+GGG - chr7_4:44503836-44503855 Msa1156240:intron 35.0%
TTCTACAACTATTGTCCCAA+AGG + chr7_4:44503854-44503873 None:intergenic 35.0%
GACAATAGTTGTAGAAGAGA+GGG - chr7_4:44503858-44503877 Msa1156240:intron 35.0%
ACAATAGTTGTAGAAGAGAG+GGG - chr7_4:44503859-44503878 Msa1156240:intron 35.0%
GATGAAGACAATAGAGGAAA+AGG + chr7_4:44504038-44504057 None:intergenic 35.0%
!! ACATGGTTTTGCAGTTTACT+TGG - chr7_4:44504063-44504082 Msa1156240:intron 35.0%
!! CATGGTTTTGCAGTTTACTT+GGG - chr7_4:44504064-44504083 Msa1156240:intron 35.0%
GGTTTATGTACTATTGTAGG+AGG - chr7_4:44504171-44504190 Msa1156240:CDS 35.0%
! TTTTAGTGCTGCCAAATCAT+AGG + chr7_4:44504226-44504245 None:intergenic 35.0%
TTGGCAGCACTAAAATATTG+GGG - chr7_4:44504231-44504250 Msa1156240:intron 35.0%
GAGCAAATTAAAAGAGTGAG+TGG + chr7_4:44504294-44504313 None:intergenic 35.0%
!!! TAAGGAACATGTTGGTCTTT+TGG - chr7_4:44504336-44504355 Msa1156240:intron 35.0%
ACCAAAAATAACCAAGCAAC+AGG - chr7_4:44504383-44504402 Msa1156240:intron 35.0%
CCAAAAATAACCAAGCAACA+GGG - chr7_4:44504384-44504403 Msa1156240:intron 35.0%
CAAAAATAACCAAGCAACAG+GGG - chr7_4:44504385-44504404 Msa1156240:intron 35.0%
AAGAAATGAAGCACATGACA+AGG - chr7_4:44504610-44504629 Msa1156240:intron 35.0%
TATTGACACAGGAAAAGTAG+TGG - chr7_4:44504761-44504780 Msa1156240:intron 35.0%
! AAAAGTAGTGGTTTTTCTCG+TGG - chr7_4:44504773-44504792 Msa1156240:intron 35.0%
AAATGTACCTTGTTACTCCT+CGG + chr7_4:44504811-44504830 None:intergenic 35.0%
! CTATTGACTGAGTTCTTAAG+TGG + chr7_4:44504920-44504939 None:intergenic 35.0%
TTAGCTTACTGAAAGTTCCT+AGG + chr7_4:44505178-44505197 None:intergenic 35.0%
!! TATTTTAGGCACTCAAGAAG+AGG - chr7_4:44505388-44505407 Msa1156240:CDS 35.0%
! TGCAAAGCGTTTAAAAGACA+TGG - chr7_4:44505535-44505554 Msa1156240:CDS 35.0%
!! AAGTGTTGTTGATGATGCTA+TGG + chr7_4:44505616-44505635 None:intergenic 35.0%
! TGCATTTGTTGCTGCATAAA+TGG + chr7_4:44505657-44505676 None:intergenic 35.0%
CAGCAACAAATGCATCTAAT+TGG - chr7_4:44505663-44505682 Msa1156240:CDS 35.0%
! TTGGCATTGTAATGATGATG+TGG + chr7_4:44505716-44505735 None:intergenic 35.0%
ATTCTGTAGTTGCATGTTGT+TGG + chr7_4:44505735-44505754 None:intergenic 35.0%
GTACTCAAACTCAAAAGCTT+TGG - chr7_4:44505765-44505784 Msa1156240:intron 35.0%
AGATCCAGAACTATTATCCA+TGG + chr7_4:44505930-44505949 None:intergenic 35.0%
! AATTCTGTTGTTTATGGTGG+TGG - chr7_4:44505950-44505969 Msa1156240:intron 35.0%
! TGGTGGATATATGATTCCAA+TGG - chr7_4:44505997-44506016 Msa1156240:intron 35.0%
! TTTTGGTGAGAGTGAGATTA+AGG - chr7_4:44506063-44506082 Msa1156240:CDS 35.0%
TTTGGTGAGAGTGAGATTAA+GGG - chr7_4:44506064-44506083 Msa1156240:CDS 35.0%
CTGTTGATCAAGGATCAAAT+TGG - chr7_4:44506176-44506195 Msa1156240:CDS 35.0%
! ATGGCCTCTATGAACTTGTT+AGG - chr7_4:44502524-44502543 Msa1156240:CDS 40.0%
! GTTGATGGATGTTGTTCTTG+TGG + chr7_4:44502563-44502582 None:intergenic 40.0%
!! ACCGTTTGATCTTGAGTTGA+TGG + chr7_4:44502578-44502597 None:intergenic 40.0%
ATCAACTCAAGATCAAACGG+TGG - chr7_4:44502577-44502596 Msa1156240:CDS 40.0%
GAAAGGTTGAGTGAATGATG+AGG + chr7_4:44502689-44502708 None:intergenic 40.0%
AACAACATTCACACCACTCA+AGG - chr7_4:44502746-44502765 Msa1156240:CDS 40.0%
TGCATGATGTTCCCAATAGT+AGG + chr7_4:44503103-44503122 None:intergenic 40.0%
!!! TTGTTGTTGTTTTCTGGTGG+TGG + chr7_4:44503371-44503390 None:intergenic 40.0%
CTATCACTTTCCATGAGTAC+TGG - chr7_4:44503425-44503444 Msa1156240:intron 40.0%
CTCAATGCAAATGTGATGAG+TGG - chr7_4:44503476-44503495 Msa1156240:intron 40.0%
GAGTGGTGAGATTTCATCAT+CGG - chr7_4:44503493-44503512 Msa1156240:intron 40.0%
TCTAGTACAACTGCAGTTGT+GGG + chr7_4:44503533-44503552 None:intergenic 40.0%
ATCTAGTACAACTGCAGTTG+TGG + chr7_4:44503534-44503553 None:intergenic 40.0%
! CACTTTCAACTACACTGGTT+TGG + chr7_4:44503562-44503581 None:intergenic 40.0%
CAAAGAACTTCCATTTACCG+TGG - chr7_4:44503614-44503633 Msa1156240:intron 40.0%
TAGAGAACCTTGTTACACCA+CGG + chr7_4:44503634-44503653 None:intergenic 40.0%
! AGATGCATGATGGTGAGTTT+AGG - chr7_4:44503780-44503799 Msa1156240:intron 40.0%
! GATGCATGATGGTGAGTTTA+GGG - chr7_4:44503781-44503800 Msa1156240:intron 40.0%
GAAGATATGAAGCTCACCTT+TGG - chr7_4:44503835-44503854 Msa1156240:intron 40.0%
GGACAATAGTTGTAGAAGAG+AGG - chr7_4:44503857-44503876 Msa1156240:intron 40.0%
GTGAGTGGAAATTAACTCAC+TGG + chr7_4:44504279-44504298 None:intergenic 40.0%
! TTGGTAACATCACTGTTGCT+TGG + chr7_4:44504368-44504387 None:intergenic 40.0%
!! CCCTGTTGCTTGGTTATTTT+TGG + chr7_4:44504387-44504406 None:intergenic 40.0%
AGGGGTGGTGATTCATATAT+TGG - chr7_4:44504403-44504422 Msa1156240:intron 40.0%
CAGACACATTCCATCAAATG+AGG + chr7_4:44504460-44504479 None:intergenic 40.0%
AGTATGTTGCGTCATTGAGA+AGG - chr7_4:44504637-44504656 Msa1156240:intron 40.0%
GATTGCAGACATCATCAACA+TGG - chr7_4:44505104-44505123 Msa1156240:intron 40.0%
GACATCATCAACATGGTAGA+TGG - chr7_4:44505111-44505130 Msa1156240:intron 40.0%
GTGGCAGCTATAAAATTCAG+AGG - chr7_4:44505428-44505447 Msa1156240:CDS 40.0%
! TAATGTGCTGCTCTCAAGTA+TGG + chr7_4:44505501-44505520 None:intergenic 40.0%
! TATGGTCTTGCTCAGTTCTA+TGG + chr7_4:44505598-44505617 None:intergenic 40.0%
GCTTCCATGGATAATAGTTC+TGG - chr7_4:44505923-44505942 Msa1156240:intron 40.0%
CCATCATTTGCAATAGCCAT+TGG + chr7_4:44506016-44506035 None:intergenic 40.0%
CCAATGGCTATTGCAAATGA+TGG - chr7_4:44506013-44506032 Msa1156240:intron 40.0%
GAGAGTGAGATTAAGGGATT+TGG - chr7_4:44506070-44506089 Msa1156240:CDS 40.0%
TCATGCAACAAAGTGAAAGG+AGG + chr7_4:44506256-44506275 None:intergenic 40.0%
! AAACGGTGGCTTCTCGTTTT+GGG - chr7_4:44502591-44502610 Msa1156240:CDS 45.0%
!! GTTTTGGTGCAGTGAGATTC+TGG + chr7_4:44503003-44503022 None:intergenic 45.0%
CCAAAGCTCGAAAACTTCCT+CGG - chr7_4:44503161-44503180 Msa1156240:CDS 45.0%
ACCACCGTATTCATGATGGT+CGG + chr7_4:44503201-44503220 None:intergenic 45.0%
TGCTACCACCGTATTCATGA+TGG + chr7_4:44503205-44503224 None:intergenic 45.0%
!!! TGTTGTTTTCTGGTGGTGGT+TGG + chr7_4:44503367-44503386 None:intergenic 45.0%
CACAGCACTTTCAACTACAC+TGG + chr7_4:44503567-44503586 None:intergenic 45.0%
CCTTGTTACACCACGGTAAA+TGG + chr7_4:44503627-44503646 None:intergenic 45.0%
CCATTTACCGTGGTGTAACA+AGG - chr7_4:44503624-44503643 Msa1156240:CDS 45.0%
! GATTGAAGGCATAGATGGAC+AGG - chr7_4:44503813-44503832 Msa1156240:intron 45.0%
TTGCAGTTTACTTGGGTGAG+TGG - chr7_4:44504071-44504090 Msa1156240:intron 45.0%
TGCAGTTTACTTGGGTGAGT+GGG - chr7_4:44504072-44504091 Msa1156240:intron 45.0%
AAATAACCAAGCAACAGGGG+TGG - chr7_4:44504388-44504407 Msa1156240:intron 45.0%
CCTTGTTACTCCTCGGTAAA+TGG + chr7_4:44504804-44504823 None:intergenic 45.0%
CCATTTACCGAGGAGTAACA+AGG - chr7_4:44504801-44504820 Msa1156240:intron 45.0%
AACATGGTAGATGGCAAGCT+AGG - chr7_4:44505120-44505139 Msa1156240:intron 45.0%
GGCAACAAAGATCTCTACCT+AGG - chr7_4:44505158-44505177 Msa1156240:CDS 45.0%
GAGAGCAGCACATTACCAAT+TGG - chr7_4:44505506-44505525 Msa1156240:CDS 45.0%
AGCAGCACATTACCAATTGG+TGG - chr7_4:44505509-44505528 Msa1156240:CDS 45.0%
GATGATGTGGTTGTTGCTGT+TGG + chr7_4:44505703-44505722 None:intergenic 45.0%
!! GTTTATGGTGGTGGAGATCA+TGG - chr7_4:44505959-44505978 Msa1156240:intron 45.0%
CATGGTGGTTATGGAGGAAA+TGG - chr7_4:44505977-44505996 Msa1156240:intron 45.0%
! CTTGCTGCTTGTGCATGATA+AGG + chr7_4:44506127-44506146 None:intergenic 45.0%
CTTATCATGCACAAGCAGCA+AGG - chr7_4:44506125-44506144 Msa1156240:CDS 45.0%
!! GCAAGTGTTGGAATAGCAGT+TGG + chr7_4:44506205-44506224 None:intergenic 45.0%
CTATTCCAACACTTGCTCCA+AGG - chr7_4:44506209-44506228 Msa1156240:CDS 45.0%
! AGAGAGACATTGGTAGTCCT+TGG + chr7_4:44506229-44506248 None:intergenic 45.0%
AGGAGGACAAAGAGAGACAT+TGG + chr7_4:44506239-44506258 None:intergenic 45.0%
!! AAAATATAATAAAAATAGAA+AGG + chr7_4:44503756-44503775 None:intergenic 5.0%
!!! ATTTTAAATATATATACTAT+TGG + chr7_4:44505314-44505333 None:intergenic 5.0%
! CAAACGGTGGCTTCTCGTTT+TGG - chr7_4:44502590-44502609 Msa1156240:CDS 50.0%
CTAGCTACAAGGCTTCACCT+TGG - chr7_4:44502877-44502896 Msa1156240:CDS 50.0%
TGGTGCAGTGAGATTCTGGT+AGG + chr7_4:44502999-44503018 None:intergenic 50.0%
! CGAGCTTTGGTTGTGCTTGT+TGG + chr7_4:44503151-44503170 None:intergenic 50.0%
!! CCGAGGAAGTTTTCGAGCTT+TGG + chr7_4:44503164-44503183 None:intergenic 50.0%
AAGCTCGAAAACTTCCTCGG+TGG - chr7_4:44503164-44503183 Msa1156240:CDS 50.0%
ACCGACCATCATGAATACGG+TGG - chr7_4:44503197-44503216 Msa1156240:CDS 50.0%
! CTGATGAGGTGGAAGGTGTA+AGG + chr7_4:44503240-44503259 None:intergenic 50.0%
TGACTGTGAGCCAGTACTCA+TGG + chr7_4:44503438-44503457 None:intergenic 50.0%
AGTACAACTGCAGTTGTGGG+TGG + chr7_4:44503530-44503549 None:intergenic 50.0%
GGCAGCTAGAGCCTATGATT+TGG - chr7_4:44504212-44504231 Msa1156240:intron 50.0%
GGTAGATGGCAAGCTAGGAT+TGG - chr7_4:44505125-44505144 Msa1156240:intron 50.0%
GCTAGGATTGGAAGAGTTGC+AGG - chr7_4:44505137-44505156 Msa1156240:intron 50.0%
GAGCATGGATTCTGCTTCCA+TGG - chr7_4:44505910-44505929 Msa1156240:intron 50.0%
!! TATGGTGGTGGAGATCATGG+TGG - chr7_4:44505962-44505981 Msa1156240:intron 50.0%
GGTGGAGATCATGGTGGTTA+TGG - chr7_4:44505968-44505987 Msa1156240:intron 50.0%
GGAGATCATGGTGGTTATGG+AGG - chr7_4:44505971-44505990 Msa1156240:intron 50.0%
GGTGGTTATGGAGGAAATGG+TGG - chr7_4:44505980-44505999 Msa1156240:intron 50.0%
GTAGTCCTTGGAGCAAGTGT+TGG + chr7_4:44506217-44506236 None:intergenic 50.0%
!! CGGTAAAAGAGTGTCCACCG+AGG + chr7_4:44503181-44503200 None:intergenic 55.0%
ACACCTTCCACCTCATCAGC+CGG - chr7_4:44503241-44503260 Msa1156240:CDS 55.0%
CAGACTCGCAAAGGAAGGCA+AGG - chr7_4:44503882-44503901 Msa1156240:intron 55.0%
GAATCACCACCCCTGTTGCT+TGG + chr7_4:44504397-44504416 None:intergenic 55.0%
CGTGGTGCATCCATTTACCG+AGG - chr7_4:44504791-44504810 Msa1156240:intron 55.0%
CACTCAAGAAGAGGCAGCAG+AGG - chr7_4:44505397-44505416 Msa1156240:CDS 55.0%
! GGCAGCAGAGGCATATGATG+TGG - chr7_4:44505409-44505428 Msa1156240:CDS 55.0%
CGCTTTGCAGCACCACCAAT+TGG + chr7_4:44505524-44505543 None:intergenic 55.0%
CTTCCGGCTGATGAGGTGGA+AGG + chr7_4:44503247-44503266 None:intergenic 60.0%
GATGCTTCCGGCTGATGAGG+TGG + chr7_4:44503251-44503270 None:intergenic 60.0%
CAGGATGCTTCCGGCTGATG+AGG + chr7_4:44503254-44503273 None:intergenic 60.0%
!! CATCAGCCGGAAGCATCCTG+TGG - chr7_4:44503254-44503273 Msa1156240:CDS 60.0%
AGAGAGGGGCAGACTCGCAA+AGG - chr7_4:44503873-44503892 Msa1156240:intron 60.0%
AGGGGCAGACTCGCAAAGGA+AGG - chr7_4:44503877-44503896 Msa1156240:intron 60.0%
CCAGCGCCACAGGATGCTTC+CGG + chr7_4:44503263-44503282 None:intergenic 65.0%
! GAAGCATCCTGTGGCGCTGG+TGG - chr7_4:44503263-44503282 Msa1156240:CDS 65.0%
!! TCCTGTGGCGCTGGTGGTGA+CGG - chr7_4:44503269-44503288 Msa1156240:CDS 65.0%
!! GGTGACGGTGGTGGTGGTGA+TGG - chr7_4:44503284-44503303 Msa1156240:CDS 65.0%
!! CCGGAAGCATCCTGTGGCGC+TGG - chr7_4:44503260-44503279 Msa1156240:CDS 70.0%
ACCGTCACCACCAGCGCCAC+AGG + chr7_4:44503273-44503292 None:intergenic 70.0%
!! TGTGGCGCTGGTGGTGACGG+TGG - chr7_4:44503272-44503291 Msa1156240:CDS 70.0%
!! GCTGGTGGTGACGGTGGTGG+TGG - chr7_4:44503278-44503297 Msa1156240:CDS 70.0%
!! GGCGCTGGTGGTGACGGTGG+TGG - chr7_4:44503275-44503294 Msa1156240:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44502524 44506279 44502524 ID=Msa1156240;Name=Msa1156240
chr7_4 mRNA 44502524 44506279 44502524 ID=Msa1156240-mRNA-1;Parent=Msa1156240;Name=Msa1156240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|8|0|691
chr7_4 exon 44506036 44506279 44506036 ID=Msa1156240-mRNA-1:exon:11427;Parent=Msa1156240-mRNA-1
chr7_4 exon 44505158 44505731 44505158 ID=Msa1156240-mRNA-1:exon:11426;Parent=Msa1156240-mRNA-1
chr7_4 exon 44504900 44504982 44504900 ID=Msa1156240-mRNA-1:exon:11425;Parent=Msa1156240-mRNA-1
chr7_4 exon 44504525 44504613 44504525 ID=Msa1156240-mRNA-1:exon:11424;Parent=Msa1156240-mRNA-1
chr7_4 exon 44504145 44504218 44504145 ID=Msa1156240-mRNA-1:exon:11423;Parent=Msa1156240-mRNA-1
chr7_4 exon 44503981 44504031 44503981 ID=Msa1156240-mRNA-1:exon:11422;Parent=Msa1156240-mRNA-1
chr7_4 exon 44503615 44503691 44503615 ID=Msa1156240-mRNA-1:exon:11421;Parent=Msa1156240-mRNA-1
chr7_4 exon 44502524 44503407 44502524 ID=Msa1156240-mRNA-1:exon:11420;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44506036 44506279 44506036 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44505158 44505731 44505158 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44504900 44504982 44504900 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44504525 44504613 44504525 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44504145 44504218 44504145 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44503981 44504031 44503981 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44503615 44503691 44503615 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
chr7_4 CDS 44502524 44503407 44502524 ID=Msa1156240-mRNA-1:cds;Parent=Msa1156240-mRNA-1
Gene Sequence

>Msa1156240

ATGGCCTCTATGAACTTGTTAGGTTTCTCTTTATCTCCACAAGAACAACATCCATCAACTCAAGATCAAACGGTGGCTTCTCGTTTTGGGTTCAACCCTAATGAAATCTCAGATTCTGATGTTCAAGGAGATCACTGCTATGATCTCTCTTCTCACACAACTCCTCATCATTCACTCAACCTTTCTCATCCTTTTTCCATTTATGAAGCTTTCCACACAAATAACAACATTCACACCACTCAAGATTGGAAGGAGAACTACAACAACCAAAACCTACTATTGGGAACATCATGCATGAACCAAAATATGAACAACAATAACCAACAAGCACAACCAAAGCTCGAAAACTTCCTCGGTGGACACTCTTTTACCGACCATCATGAATACGGTGGTAGCAACTCATACTCTTCCTTACACCTTCCACCTCATCAGCCGGAAGCATCCTGTGGCGCTGGTGGTGACGGTGGTGGTGGTGATGGTAGCACAAGTAACAATAACTCAATAGGTTTATCTATGATCAAAACATGGCTCAGAAACCAACCACCACCAGAAAACAACAACAACAATAACAATGAAAGTGGTGCACGTGTGCAGACACTATCACTTTCCATGAGTACTGGCTCACAGTCAAGTTCATCTGTGCCTCTTCTCAATGCAAATGTGATGAGTGGTGAGATTTCATCATCGGAAAACAAACAACCACCCACAACTGCAGTTGTACTAGATAGCAACCAAACCAGTGTAGTTGAAAGTGCTGTGCCTAGAAAATCCATTGATACATTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCACCTTTGGGACAATAGTTGTAGAAGAGAGGGGCAGACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATATTGGGGAACAACTACTACAACAAATTTTCCAATTAGCCATTATGAAAAAGAAGTGGAAGAAATGAAGCACATGACAAGGCAAGAGTATGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGTGGTGCATCCATTTACCGAGGAGTAACAAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTGGCAGCTATAAAATTCAGAGGACTAAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTCAAAACCATACTTGAGAGCAGCACATTACCAATTGGTGGTGCTGCAAAGCGTTTAAAAGACATGGAGCAAGTTGAATTGAATCATGTGAATGTTGATATTGGCCATAGAACTGAGCAAGACCATAGCATCATCAACAACACTTCCCATTTAACAGAACAAGCCATTTATGCAGCAACAAATGCATCTAATTGGCATGCACTTTCATTCCAACAGCAACAACCACATCATCATTACAATGCCAACAACATGCAACTACAGAATTATCCTTATGGTACTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATAGTACTTATACTACTGCTACTGATATTCATCAACTACAGTTAGGGAATAATAGTAACAATACTCACAATTTCTTTGGTTTACAAAATATCATGAGCATGGATTCTGCTTCCATGGATAATAGTTCTGGATCTAATTCTGTTGTTTATGGTGGTGGAGATCATGGTGGTTATGGAGGAAATGGTGGATATATGATTCCAATGGCTATTGCAAATGATGGTAACCAAAATCAAAGAAGCAACAATAATTTTGGTGAGAGTGAGATTAAGGGATTTGGTTATGAAAATGTTTTTGGGACTAGCAATGATCCTTATCATGCACAAGCAGCAAGGAACTTGTATTATCAGCCACAACAATTATCTGTTGATCAAGGATCAAATTGGGTTCCAACTGCTATTCCAACACTTGCTCCAAGGACTACCAATGTCTCTCTTTGTCCTCCTTTCACTTTGTTGCATGAATAG

Protein sequence

>Msa1156240

MASMNLLGFSLSPQEQHPSTQDQTVASRFGFNPNEISDSDVQGDHCYDLSSHTTPHHSLNLSHPFSIYEAFHTNNNIHTTQDWKENYNNQNLLLGTSCMNQNMNNNNQQAQPKLENFLGGHSFTDHHEYGGSNSYSSLHLPPHQPEASCGAGGDGGGGDGSTSNNNSIGLSMIKTWLRNQPPPENNNNNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELNHVNVDIGHRTEQDHSIINNTSHLTEQAIYAATNASNWHALSFQQQQPHHHYNANNMQLQNYPYGTQTQKLWCKQEQDSDDHSTYTTATDIHQLQLGNNSNNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGGDHGGYGGNGGYMIPMAIANDGNQNQRSNNNFGESEIKGFGYENVFGTSNDPYHAQAARNLYYQPQQLSVDQGSNWVPTAIPTLAPRTTNVSLCPPFTLLHE*