AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0150910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150910 MtrunA17_Chr1g0159221 95.964 223 9 0 1 223 1 223 2.16e-158 437
Msa0150910 MtrunA17_Chr1g0159211 89.286 224 22 2 1 223 1 223 6.64e-143 398
Msa0150910 MtrunA17_Chr3g0126121 68.056 216 68 1 9 223 7 222 1.78e-107 308
Msa0150910 MtrunA17_Chr1g0187451 34.043 188 120 1 36 223 19 202 5.23e-39 133
Msa0150910 MtrunA17_Chr1g0166501 33.511 188 121 1 36 223 19 202 1.66e-36 127
Msa0150910 MtrunA17_Chr1g0187431 36.634 101 64 0 63 163 1 101 7.78e-19 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150910 AT1G21360.1 50.909 220 105 2 5 222 4 222 3.62e-74 224
Msa0150910 AT3G21260.3 51.835 218 100 1 10 222 15 232 1.47e-66 205
Msa0150910 AT1G21360.3 53.988 163 72 2 5 165 4 165 3.58e-55 175
Msa0150910 AT1G21360.2 50.625 160 79 0 63 222 1 160 2.95e-53 169
Msa0150910 AT3G21260.2 53.741 147 68 0 76 222 2 148 1.36e-44 146
Msa0150910 AT3G21260.1 53.147 143 67 0 80 222 1 143 8.07e-43 142
Msa0150910 AT2G33470.2 34.615 182 115 1 42 223 25 202 8.25e-37 128
Msa0150910 AT2G33470.1 34.615 182 115 1 42 223 25 202 8.25e-37 128

Find 40 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTAGAAATATTGAAAA+TGG 0.207243 1_4:-12650372 Msa0150910:CDS
TCCAACAACGAATCTAAATT+TGG 0.270826 1_4:-12650390 Msa0150910:CDS
TAAGCAGAAAATGCAGATAT+TGG 0.283442 1_4:-12648199 Msa0150910:CDS
TATTCAGTTCTGCATGTTCT+TGG 0.290813 1_4:-12651456 Msa0150910:intron
CAATGATCCTGAAAAGAAAA+TGG 0.314820 1_4:-12648825 Msa0150910:CDS
GAGTGGTAAGAGAGAAATAA+TGG 0.318341 1_4:-12651598 Msa0150910:CDS
TGTCATTGAAGAACTTTCTA+TGG 0.343601 1_4:-12651553 Msa0150910:CDS
GGTCTTCATCTTCAGTCTTA+AGG 0.359906 1_4:+12648232 None:intergenic
ACCAAATTTAGATTCGTTGT+TGG 0.393140 1_4:+12650389 None:intergenic
TGGGGATATGAGCAGCTTCA+TGG 0.400821 1_4:+12651502 None:intergenic
GCTGCAGTAAGGCCTTTGTT+TGG 0.415497 1_4:-12650316 Msa0150910:CDS
GGATTTCATCAACTGCTGTC+AGG 0.429044 1_4:-12648751 Msa0150910:CDS
TGTCTCAAAACAGCCATTGT+TGG 0.436087 1_4:+12651316 None:intergenic
CATTAAAACCGTGGCATGGA+TGG 0.458818 1_4:-12648772 Msa0150910:CDS
AACGGAAGGCATTGCAAAGA+AGG 0.467244 1_4:-12650345 Msa0150910:CDS
GGAGCTATTATGCAGGACCT+TGG 0.493446 1_4:-12648879 Msa0150910:intron
TTTGCAGAGATTATTTAACT+TGG 0.500380 1_4:-12647981 Msa0150910:intron
CAGTGAATATCTTCAAGAAA+AGG 0.501677 1_4:+12648162 None:intergenic
TGAAAAGAAAATGGAGAAAG+TGG 0.505804 1_4:-12648816 Msa0150910:CDS
ATAGAGAGAAAAGGCTTGGT+GGG 0.506837 1_4:+12651483 None:intergenic
GGATAGTATTTGTAATAATG+AGG 0.508394 1_4:+12648847 None:intergenic
AGGCCTTTGTTTGGCTCACA+AGG 0.523024 1_4:-12650307 Msa0150910:intron
GAATAACATATAGAGAGAAA+AGG 0.539202 1_4:+12651474 None:intergenic
ACATATAGAGAGAAAAGGCT+TGG 0.544110 1_4:+12651479 None:intergenic
GAAGGGGTCTAGCTGCAGTA+AGG 0.554936 1_4:-12650327 Msa0150910:CDS
AATATTGAAAATGGAAGCAA+CGG 0.559253 1_4:-12650363 Msa0150910:CDS
TATAGAGAGAAAAGGCTTGG+TGG 0.564749 1_4:+12651482 None:intergenic
GATTTCATCAACTGCTGTCA+GGG 0.567407 1_4:-12648750 Msa0150910:intron
ACGGAAGGCATTGCAAAGAA+GGG 0.573082 1_4:-12650344 Msa0150910:CDS
AGATGTGTATCAAAATATCA+AGG 0.576462 1_4:-12651293 Msa0150910:intron
TTGAAAATGGAAGCAACGGA+AGG 0.595410 1_4:-12650359 Msa0150910:CDS
TAATGAGGAGGTAAAATCCA+AGG 0.597945 1_4:+12648862 None:intergenic
GATGAAATCCATCCATGCCA+CGG 0.603497 1_4:+12648764 None:intergenic
GGTTGGTGAAATATGAAGAG+TGG 0.607296 1_4:-12651615 None:intergenic
GCTACATTAAAACCGTGGCA+TGG 0.611773 1_4:-12648776 Msa0150910:CDS
CGGAAGGCATTGCAAAGAAG+GGG 0.639295 1_4:-12650343 Msa0150910:CDS
TCACCTTGTGAGCCAAACAA+AGG 0.647841 1_4:+12650304 None:intergenic
TAGTATTTGTAATAATGAGG+AGG 0.660461 1_4:+12648850 None:intergenic
TAGAGAGAAAAGGCTTGGTG+GGG 0.681540 1_4:+12651484 None:intergenic
ATGAAGCTACATTAAAACCG+TGG 0.696283 1_4:-12648781 Msa0150910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAATA+AGG - chr1_4:12649556-12649575 Msa0150910:intron 0.0%
!! AATAATAATAATAATAATAA+GGG - chr1_4:12649557-12649576 Msa0150910:intron 0.0%
!! TATTATTATTATTATTATTA+GGG + chr1_4:12649556-12649575 None:intergenic 0.0%
!! TTATTATTATTATTATTATT+AGG + chr1_4:12649557-12649576 None:intergenic 0.0%
!!! TTTTTTATAGATAAAATGTT+AGG - chr1_4:12648390-12648409 Msa0150910:intron 10.0%
!!! TTTTTATAGATAAAATGTTA+GGG - chr1_4:12648391-12648410 Msa0150910:intron 10.0%
!! AAAGTTATATGTTTATATAT+AGG + chr1_4:12649290-12649309 None:intergenic 10.0%
!! TATTGAAATAAAATTATCAA+TGG + chr1_4:12649378-12649397 None:intergenic 10.0%
!!! TAAGAAAAATTTAAAATGAA+TGG + chr1_4:12650253-12650272 None:intergenic 10.0%
!!! AAATTAAGATATTTTTTCTT+TGG + chr1_4:12650663-12650682 None:intergenic 10.0%
!!! ACTTTATTTATTTATTTTTG+GGG + chr1_4:12651058-12651077 None:intergenic 10.0%
!!! TTTTTCCATAATATCAAATT+AGG - chr1_4:12648724-12648743 Msa0150910:intron 15.0%
!!! GTTATTTAAATTTAAGGTAT+TGG + chr1_4:12648894-12648913 None:intergenic 15.0%
!!! AGTTCTGTTATTTAAATTTA+AGG + chr1_4:12648900-12648919 None:intergenic 15.0%
!!! TTATTTTGAGAAATTGTTTT+TGG + chr1_4:12649331-12649350 None:intergenic 15.0%
!!! ATTCAGTTTTTACAAAAAAA+TGG + chr1_4:12649532-12649551 None:intergenic 15.0%
!!! AAGTGTGATTTTATTTTTTA+GGG + chr1_4:12649691-12649710 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTTT+AGG + chr1_4:12649692-12649711 None:intergenic 15.0%
!!! AAGTGTGATTTTATTTTATA+AGG - chr1_4:12649849-12649868 Msa0150910:intron 15.0%
!! CAAAATTGTGAATATTTATA+GGG - chr1_4:12649880-12649899 Msa0150910:intron 15.0%
!! AGAAAAAATATCTTAATTTC+AGG - chr1_4:12650664-12650683 Msa0150910:intron 15.0%
!!! AATATCGTATATCTTTTTTT+AGG - chr1_4:12650914-12650933 Msa0150910:intron 15.0%
!!! ATATCGTATATCTTTTTTTA+GGG - chr1_4:12650915-12650934 Msa0150910:intron 15.0%
!!! CTTTATTTATTTATTTTTGG+GGG + chr1_4:12651057-12651076 None:intergenic 15.0%
!!! TTTTTTTGTGATTGAAATTT+AGG - chr1_4:12651161-12651180 Msa0150910:intron 15.0%
!!! TTTTTTGTGATTGAAATTTA+GGG - chr1_4:12651162-12651181 Msa0150910:intron 15.0%
!! TAAAAAAATGCATTAAGAGA+AGG + chr1_4:12648377-12648396 None:intergenic 20.0%
!!! ATATTTTATGAGACCATATT+TGG + chr1_4:12648573-12648592 None:intergenic 20.0%
!! AGTATATAATGTAAAGAGAA+GGG + chr1_4:12649010-12649029 None:intergenic 20.0%
!! TAGTATATAATGTAAAGAGA+AGG + chr1_4:12649011-12649030 None:intergenic 20.0%
!! TCTCTTTACATTATATACTA+TGG - chr1_4:12649011-12649030 Msa0150910:intron 20.0%
!! CTCTTTACATTATATACTAT+GGG - chr1_4:12649012-12649031 Msa0150910:intron 20.0%
!! TCTTTACATTATATACTATG+GGG - chr1_4:12649013-12649032 Msa0150910:intron 20.0%
!! TTTAATACACAACTAATCAT+TGG + chr1_4:12649112-12649131 None:intergenic 20.0%
!! TTTGGTAGAAATATTGAAAA+TGG - chr1_4:12649192-12649211 Msa0150910:intron 20.0%
!!! AGAAATTGTTTTTGGTTAAT+CGG + chr1_4:12649323-12649342 None:intergenic 20.0%
!!! ATGTCATTTTATGTTTTCAA+TGG - chr1_4:12649351-12649370 Msa0150910:intron 20.0%
!!! TGTCATTTTATGTTTTCAAT+GGG - chr1_4:12649352-12649371 Msa0150910:intron 20.0%
!! TATCATGTGTATGTTTAATA+TGG - chr1_4:12649474-12649493 Msa0150910:intron 20.0%
!!! AATTTTTCCATCAACATTTT+TGG + chr1_4:12649752-12649771 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - chr1_4:12649756-12649775 Msa0150910:intron 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - chr1_4:12649756-12649775 Msa0150910:intron 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG - chr1_4:12649757-12649776 Msa0150910:intron 20.0%
!!! TGATGATGGAAAATTTTATA+AGG - chr1_4:12649820-12649839 Msa0150910:intron 20.0%
!!! CCTATAAATATTCACAATTT+TGG + chr1_4:12649882-12649901 None:intergenic 20.0%
!! CCAAAATTGTGAATATTTAT+AGG - chr1_4:12649879-12649898 Msa0150910:intron 20.0%
!! AATGAAACACATAATATAGA+AGG - chr1_4:12650606-12650625 Msa0150910:intron 20.0%
!! ATGAAACACATAATATAGAA+GGG - chr1_4:12650607-12650626 Msa0150910:intron 20.0%
!!! AGATATTTTTTCTTTGGTAA+TGG + chr1_4:12650657-12650676 None:intergenic 20.0%
!!! CTTTTAGTGAAGAAATTAAA+AGG - chr1_4:12651238-12651257 Msa0150910:intron 20.0%
!!! ATTTTCTGGAACTAATTTTA+GGG + chr1_4:12651295-12651314 None:intergenic 20.0%
!!! TATTTTCTGGAACTAATTTT+AGG + chr1_4:12651296-12651315 None:intergenic 20.0%
!!! TCAATGAATGTTTTATTTTC+TGG + chr1_4:12651309-12651328 None:intergenic 20.0%
! GAATAACATATAGAGAGAAA+AGG + chr1_4:12648093-12648112 None:intergenic 25.0%
! TACGTGTAAACAGAAAAAAT+TGG - chr1_4:12648224-12648243 Msa0150910:CDS 25.0%
! ACGTGTAAACAGAAAAAATT+GGG - chr1_4:12648225-12648244 Msa0150910:CDS 25.0%
! AGATGTGTATCAAAATATCA+AGG - chr1_4:12648271-12648290 Msa0150910:CDS 25.0%
! TGAATTGAAAGATTTAGCTA+TGG + chr1_4:12648309-12648328 None:intergenic 25.0%
! ATTAAGAGAAGGTTAAGTAA+GGG + chr1_4:12648366-12648385 None:intergenic 25.0%
! TATGTTAACCCTTAGATTAT+CGG - chr1_4:12648509-12648528 Msa0150910:intron 25.0%
! ATAGGCCTAATTTGATATTA+TGG + chr1_4:12648732-12648751 None:intergenic 25.0%
! GTGAATATAAATAGAGAGAA+TGG + chr1_4:12648848-12648867 None:intergenic 25.0%
! TCTACAAACTTATAGATCAT+TGG + chr1_4:12648870-12648889 None:intergenic 25.0%
! GTTAGGTGGTTAATAAATTA+AGG - chr1_4:12648980-12648999 Msa0150910:intron 25.0%
! GTATATAATGTAAAGAGAAG+GGG + chr1_4:12649009-12649028 None:intergenic 25.0%
! AATATTGAAAATGGAAGCAA+CGG - chr1_4:12649201-12649220 Msa0150910:intron 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG - chr1_4:12649724-12649743 Msa0150910:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG - chr1_4:12649725-12649744 Msa0150910:intron 25.0%
! ATAGGAACTAAAAATGTTGA+TGG - chr1_4:12649774-12649793 Msa0150910:intron 25.0%
! TGAAACTTACCAAAAATATG+AGG - chr1_4:12650079-12650098 Msa0150910:intron 25.0%
! GAAACTTACCAAAAATATGA+GGG - chr1_4:12650080-12650099 Msa0150910:intron 25.0%
!! ATGGAAAAGTGTAATAATTG+AGG + chr1_4:12650234-12650253 None:intergenic 25.0%
!!! TGGACTAGTAAAATTCTATT+TGG + chr1_4:12650349-12650368 None:intergenic 25.0%
!! TCTTTGTTTGATGAATAGAA+TGG + chr1_4:12650369-12650388 None:intergenic 25.0%
! ACATAATATAGAAGGGTTAA+GGG - chr1_4:12650614-12650633 Msa0150910:intron 25.0%
! TAGTATTTGTAATAATGAGG+AGG + chr1_4:12650717-12650736 None:intergenic 25.0%
! GGATAGTATTTGTAATAATG+AGG + chr1_4:12650720-12650739 None:intergenic 25.0%
! AAGGTGTGAACAAATATAAT+TGG - chr1_4:12651257-12651276 Msa0150910:intron 25.0%
! TATCAACTTGTCATGAAAAT+TGG - chr1_4:12651459-12651478 Msa0150910:CDS 25.0%
! TCTTCTTCAAGAAACAAATT+AGG - chr1_4:12651507-12651526 Msa0150910:CDS 25.0%
! TTTGCAGAGATTATTTAACT+TGG - chr1_4:12651583-12651602 Msa0150910:CDS 25.0%
TGTCATTGAAGAACTTTCTA+TGG - chr1_4:12648011-12648030 Msa0150910:intron 30.0%
CATTAAGAGAAGGTTAAGTA+AGG + chr1_4:12648367-12648386 None:intergenic 30.0%
! GAGATCTAGAGTTTAAATCT+TGG + chr1_4:12648430-12648449 None:intergenic 30.0%
ATCGTAAATCAAGTAGCTAT+AGG + chr1_4:12648452-12648471 None:intergenic 30.0%
ATGTTAACCCTTAGATTATC+GGG - chr1_4:12648510-12648529 Msa0150910:intron 30.0%
! CACTTTGGTAATTTGAAGTT+AGG - chr1_4:12648540-12648559 Msa0150910:intron 30.0%
!!! AGAACTCGAGTTCAATTTTT+TGG + chr1_4:12648604-12648623 None:intergenic 30.0%
TGACATCATAACTACAATTG+AGG - chr1_4:12648696-12648715 Msa0150910:intron 30.0%
! TTTCTAAATTGCTGTTGCAT+AGG + chr1_4:12648750-12648769 None:intergenic 30.0%
TCGAACATAAAAGTTAACCA+AGG - chr1_4:12648950-12648969 Msa0150910:intron 30.0%
CGAACATAAAAGTTAACCAA+GGG - chr1_4:12648951-12648970 Msa0150910:intron 30.0%
TTAACCAAGGGTTATAAGTT+AGG - chr1_4:12648963-12648982 Msa0150910:intron 30.0%
TTCCAATCTCTACAATCAAA+CGG + chr1_4:12649137-12649156 None:intergenic 30.0%
TCCAACAACGAATCTAAATT+TGG - chr1_4:12649174-12649193 Msa0150910:intron 30.0%
ACCAAATTTAGATTCGTTGT+TGG + chr1_4:12649178-12649197 None:intergenic 30.0%
TTAATATGGACCTCTCAAAT+TGG - chr1_4:12649488-12649507 Msa0150910:intron 30.0%
AAATGGTAAATGTCAACCAT+TGG + chr1_4:12649515-12649534 None:intergenic 30.0%
ATAGGGACTAAAAATGATGA+TGG - chr1_4:12649806-12649825 Msa0150910:intron 30.0%
TGCATAAAATATGCAAGATC+CGG - chr1_4:12650160-12650179 Msa0150910:intron 30.0%
!! ATTGAGGATTTTTGATGATC+CGG + chr1_4:12650218-12650237 None:intergenic 30.0%
CACATAATATAGAAGGGTTA+AGG - chr1_4:12650613-12650632 Msa0150910:intron 30.0%
CATAATATAGAAGGGTTAAG+GGG - chr1_4:12650615-12650634 Msa0150910:intron 30.0%
!! CATTTTCTTTTCAGGATCAT+TGG + chr1_4:12650741-12650760 None:intergenic 30.0%
CAATGATCCTGAAAAGAAAA+TGG - chr1_4:12650739-12650758 Msa0150910:intron 30.0%
! ACTTTCTCCATTTTCTTTTC+AGG + chr1_4:12650749-12650768 None:intergenic 30.0%
TGAAAAGAAAATGGAGAAAG+TGG - chr1_4:12650748-12650767 Msa0150910:intron 30.0%
AGTAATGACTGAGATTAGAT+TGG + chr1_4:12651090-12651109 None:intergenic 30.0%
ACAAATATAATTGGCATTGC+AGG - chr1_4:12651266-12651285 Msa0150910:intron 30.0%
TAAGCAGAAAATGCAGATAT+TGG - chr1_4:12651365-12651384 Msa0150910:intron 30.0%
CAGTGAATATCTTCAAGAAA+AGG + chr1_4:12651405-12651424 None:intergenic 30.0%
!! CATGACAAGTTGATAACATT+AGG + chr1_4:12651454-12651473 None:intergenic 30.0%
AATGCAATACAAAAAACTGC+TGG + chr1_4:12651485-12651504 None:intergenic 30.0%
CTGCAAAACAAACATACATA+AGG + chr1_4:12651570-12651589 None:intergenic 30.0%
GAGTGGTAAGAGAGAAATAA+TGG - chr1_4:12647966-12647985 Msa0150910:CDS 35.0%
ACATATAGAGAGAAAAGGCT+TGG + chr1_4:12648088-12648107 None:intergenic 35.0%
TATTCAGTTCTGCATGTTCT+TGG - chr1_4:12648108-12648127 Msa0150910:intron 35.0%
AGAAAAAATTGGGCCAACAA+TGG - chr1_4:12648235-12648254 Msa0150910:CDS 35.0%
AGGTTAAGTAAGGGTTAACT+GGG + chr1_4:12648357-12648376 None:intergenic 35.0%
AAGGTTAAGTAAGGGTTAAC+TGG + chr1_4:12648358-12648377 None:intergenic 35.0%
GAGATCGTCAAAAGATGAAT+CGG + chr1_4:12648632-12648651 None:intergenic 35.0%
TTCCGTTTGATTGTAGAGAT+TGG - chr1_4:12649132-12649151 Msa0150910:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG + chr1_4:12649720-12649739 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG + chr1_4:12649721-12649740 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG + chr1_4:12649734-12649753 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG - chr1_4:12649742-12649761 Msa0150910:intron 35.0%
GCATAAAATATGCAAGATCC+GGG - chr1_4:12650161-12650180 Msa0150910:intron 35.0%
CATAAAATATGCAAGATCCG+GGG - chr1_4:12650162-12650181 Msa0150910:intron 35.0%
!!! TGATGATCCGGGTTTTTTTT+TGG + chr1_4:12650206-12650225 None:intergenic 35.0%
!! TTGAGGATTTTTGATGATCC+GGG + chr1_4:12650217-12650236 None:intergenic 35.0%
TGGAATTTCTGCTAATTGTG+AGG + chr1_4:12650329-12650348 None:intergenic 35.0%
TGTGCAAATCTCAAATGAGA+CGG + chr1_4:12650415-12650434 None:intergenic 35.0%
AATTTCAGGAGCTATTATGC+AGG - chr1_4:12650678-12650697 Msa0150910:intron 35.0%
TAATGAGGAGGTAAAATCCA+AGG + chr1_4:12650705-12650724 None:intergenic 35.0%
ATGAAGCTACATTAAAACCG+TGG - chr1_4:12650783-12650802 Msa0150910:intron 35.0%
! TGTGATTGAAATTTAGGGTG+AGG - chr1_4:12651167-12651186 Msa0150910:intron 35.0%
! GTGATTGAAATTTAGGGTGA+GGG - chr1_4:12651168-12651187 Msa0150910:intron 35.0%
! TGATTGAAATTTAGGGTGAG+GGG - chr1_4:12651169-12651188 Msa0150910:intron 35.0%
AATATAATTGGCATTGCAGG+TGG - chr1_4:12651269-12651288 Msa0150910:intron 35.0%
! TTTTCTGCTTAAGCATGTCA+CGG + chr1_4:12651356-12651375 None:intergenic 35.0%
! GCTTCATGGTTTTCTTCAGT+TGG + chr1_4:12648051-12648070 None:intergenic 40.0%
! ATAGAGAGAAAAGGCTTGGT+GGG + chr1_4:12648084-12648103 None:intergenic 40.0%
TATAGAGAGAAAAGGCTTGG+TGG + chr1_4:12648085-12648104 None:intergenic 40.0%
TGTCTCAAAACAGCCATTGT+TGG + chr1_4:12648251-12648270 None:intergenic 40.0%
TTAAGTAAGGGTTAACTGGG+TGG + chr1_4:12648354-12648373 None:intergenic 40.0%
CTCGTATCCCGATAATCTAA+GGG + chr1_4:12648520-12648539 None:intergenic 40.0%
GTTAGGCTATGAGCCAAATA+TGG - chr1_4:12648557-12648576 Msa0150910:intron 40.0%
ACCACTTGAGTTCAATCACT+TGG - chr1_4:12648656-12648675 Msa0150910:intron 40.0%
ACCAAGTGATTGAACTCAAG+TGG + chr1_4:12648660-12648679 None:intergenic 40.0%
CGTTCTCATTGAAAGAACAC+AGG + chr1_4:12648804-12648823 None:intergenic 40.0%
ACCAAGGGTTATAAGTTAGG+TGG - chr1_4:12648966-12648985 Msa0150910:intron 40.0%
ACCACCTAACTTATAACCCT+TGG + chr1_4:12648970-12648989 None:intergenic 40.0%
TTGAAAATGGAAGCAACGGA+AGG - chr1_4:12649205-12649224 Msa0150910:intron 40.0%
AACCATTGGACCAATTTGAG+AGG + chr1_4:12649501-12649520 None:intergenic 40.0%
! ACAGTGGACCCTCATATTTT+TGG + chr1_4:12650091-12650110 None:intergenic 40.0%
!!! TTTTTTTTTGGTAGTGGCCG+GGG + chr1_4:12650194-12650213 None:intergenic 40.0%
!!! GTTTTTTTTTGGTAGTGGCC+GGG + chr1_4:12650195-12650214 None:intergenic 40.0%
!!! GGTTTTTTTTTGGTAGTGGC+CGG + chr1_4:12650196-12650215 None:intergenic 40.0%
GCCACTACCAAAAAAAAACC+CGG - chr1_4:12650196-12650215 Msa0150910:intron 40.0%
!!! TCCGGGTTTTTTTTTGGTAG+TGG + chr1_4:12650200-12650219 None:intergenic 40.0%
GATTTCATCAACTGCTGTCA+GGG - chr1_4:12650814-12650833 Msa0150910:intron 40.0%
! AAATTTAGGGTGAGGGGATT+AGG - chr1_4:12651175-12651194 Msa0150910:intron 40.0%
GGTCTTCATCTTCAGTCTTA+AGG + chr1_4:12651335-12651354 None:intergenic 40.0%
!! TAGAGAGAAAAGGCTTGGTG+GGG + chr1_4:12648083-12648102 None:intergenic 45.0%
GCTCGTATCCCGATAATCTA+AGG + chr1_4:12648521-12648540 None:intergenic 45.0%
TTATCGGGATACGAGCACTT+TGG - chr1_4:12648525-12648544 Msa0150910:intron 45.0%
!! AACGGAAGGCATTGCAAAGA+AGG - chr1_4:12649219-12649238 Msa0150910:intron 45.0%
!! ACGGAAGGCATTGCAAAGAA+GGG - chr1_4:12649220-12649239 Msa0150910:intron 45.0%
TCACCTTGTGAGCCAAACAA+AGG + chr1_4:12649263-12649282 None:intergenic 45.0%
GACCTCTCAAATTGGTCCAA+TGG - chr1_4:12649496-12649515 Msa0150910:intron 45.0%
GCTACATTAAAACCGTGGCA+TGG - chr1_4:12650788-12650807 Msa0150910:intron 45.0%
CATTAAAACCGTGGCATGGA+TGG - chr1_4:12650792-12650811 Msa0150910:intron 45.0%
GATGAAATCCATCCATGCCA+CGG + chr1_4:12650803-12650822 None:intergenic 45.0%
GGATTTCATCAACTGCTGTC+AGG - chr1_4:12650813-12650832 Msa0150910:intron 45.0%
!! ATTAATCATATTTAAAAAAA+TGG + chr1_4:12649079-12649098 None:intergenic 5.0%
!!! TTTTTTTAAATATGATTAAT+TGG - chr1_4:12649079-12649098 Msa0150910:intron 5.0%
!!! AATTTTTCAATTAAAAAAAT+AGG - chr1_4:12650461-12650480 Msa0150910:intron 5.0%
!!! ATTAACTATTTTAATAAATA+AGG - chr1_4:12650503-12650522 Msa0150910:intron 5.0%
!!! TTAACTATTTTAATAAATAA+GGG - chr1_4:12650504-12650523 Msa0150910:intron 5.0%
!!! AACTTTATTTATTTATTTTT+GGG + chr1_4:12651059-12651078 None:intergenic 5.0%
!!! TAACTTTATTTATTTATTTT+TGG + chr1_4:12651060-12651079 None:intergenic 5.0%
!!! TATTAATTTTTAGAAATTTT+AGG - chr1_4:12651129-12651148 Msa0150910:intron 5.0%
!!! ATTTTTTTTTTTTCTTTTAT+AGG + chr1_4:12651544-12651563 None:intergenic 5.0%
TGGGGATATGAGCAGCTTCA+TGG + chr1_4:12648065-12648084 None:intergenic 50.0%
!! CGGAAGGCATTGCAAAGAAG+GGG - chr1_4:12649221-12649240 Msa0150910:intron 50.0%
GCTGCAGTAAGGCCTTTGTT+TGG - chr1_4:12649248-12649267 Msa0150910:intron 50.0%
! AGGCCTTTGTTTGGCTCACA+AGG - chr1_4:12649257-12649276 Msa0150910:intron 50.0%
TGAGGGTCCACTGTTAAACC+CGG - chr1_4:12650097-12650116 Msa0150910:intron 50.0%
CGATGATCCGGGTTTAACAG+TGG + chr1_4:12650107-12650126 None:intergenic 50.0%
TGAGCTTAGCTCAGCTGGTT+GGG - chr1_4:12650133-12650152 Msa0150910:intron 50.0%
GGAGCTATTATGCAGGACCT+TGG - chr1_4:12650685-12650704 Msa0150910:intron 50.0%
GAAGGGGTCTAGCTGCAGTA+AGG - chr1_4:12649237-12649256 Msa0150910:intron 55.0%
AGCTCACGAGGACGATGATC+CGG + chr1_4:12650119-12650138 None:intergenic 55.0%
GTGAGCTTAGCTCAGCTGGT+TGG - chr1_4:12650132-12650151 Msa0150910:intron 55.0%
AAGATCCGGGGTTCAAACCC+CGG - chr1_4:12650174-12650193 Msa0150910:intron 55.0%
GCTCACGAGGACGATGATCC+GGG + chr1_4:12650118-12650137 None:intergenic 60.0%
CCAGCTGAGCTAAGCTCACG+AGG + chr1_4:12650131-12650150 None:intergenic 60.0%
CCTCGTGAGCTTAGCTCAGC+TGG - chr1_4:12650128-12650147 Msa0150910:intron 60.0%
AGTGGCCGGGGTTTGAACCC+CGG + chr1_4:12650182-12650201 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 12647961 12651625 12647961 ID=Msa0150910;Name=Msa0150910
chr1_4 mRNA 12647961 12651625 12647961 ID=Msa0150910-mRNA-1;Parent=Msa0150910;Name=Msa0150910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.8|0.66|6|0|223
chr1_4 exon 12651457 12651625 12651457 ID=Msa0150910-mRNA-1:exon:5085;Parent=Msa0150910-mRNA-1
chr1_4 exon 12651294 12651349 12651294 ID=Msa0150910-mRNA-1:exon:5084;Parent=Msa0150910-mRNA-1
chr1_4 exon 12650308 12650438 12650308 ID=Msa0150910-mRNA-1:exon:5083;Parent=Msa0150910-mRNA-1
chr1_4 exon 12648751 12648886 12648751 ID=Msa0150910-mRNA-1:exon:5082;Parent=Msa0150910-mRNA-1
chr1_4 exon 12648155 12648298 12648155 ID=Msa0150910-mRNA-1:exon:5081;Parent=Msa0150910-mRNA-1
chr1_4 exon 12647961 12647996 12647961 ID=Msa0150910-mRNA-1:exon:5080;Parent=Msa0150910-mRNA-1
chr1_4 CDS 12651457 12651625 12651457 ID=Msa0150910-mRNA-1:cds;Parent=Msa0150910-mRNA-1
chr1_4 CDS 12651294 12651349 12651294 ID=Msa0150910-mRNA-1:cds;Parent=Msa0150910-mRNA-1
chr1_4 CDS 12650308 12650438 12650308 ID=Msa0150910-mRNA-1:cds;Parent=Msa0150910-mRNA-1
chr1_4 CDS 12648751 12648886 12648751 ID=Msa0150910-mRNA-1:cds;Parent=Msa0150910-mRNA-1
chr1_4 CDS 12648155 12648298 12648155 ID=Msa0150910-mRNA-1:cds;Parent=Msa0150910-mRNA-1
chr1_4 CDS 12647961 12647996 12647961 ID=Msa0150910-mRNA-1:cds;Parent=Msa0150910-mRNA-1
Gene Sequence

>Msa0150910

ATGAAGAGTGGTAAGAGAGAAATAATGGAGAAGAAATCAGAGATAAGTTGTGTCATTGAAGAACTTTCTATGGTTGTAATAGTTAAACCAACTGAAGAAAACCATGAAGCTGCTCATATCCCCACCAAGCCTTTTCTCTCTATATGTTATTCAGTTCTGCATGTTCTTGAAAAAATTGGGCCAACAATGGCTGTTTTGAGACAAGATGTGTATCAAAATATCAAGAGATTGGAACTAATGCATGAATCAAATCCAACAACGAATCTAAATTTGGTAGAAATATTGAAAATGGAAGCAACGGAAGGCATTGCAAAGAAGGGGTCTAGCTGCAGTAAGGCCTTTGTTTGGCTCACAAGGACCTTGGATTTTACCTCCTCATTATTACAAATACTATCCAATGATCCTGAAAAGAAAATGGAGAAAGTGGTTGAAGAATCATATGAAGCTACATTAAAACCGTGGCATGGATGGATTTCATCAACTGCTGTCAGGGTGGCCCTAAAATTAGTTCCAGAAAATAAAACATTCATTGATCTCCTTAAGACTGAAGATGAAGACCGTGACATGCTTAAGCAGAAAATGCAGATATTGGTTTCTCTACTTGTGCCTTTTCTTGAAGATATTCACTGTATTTTAAGATTATTTAACTTGGACAAGCTGAAATCAACCTGA

Protein sequence

>Msa0150910

MKSGKREIMEKKSEISCVIEELSMVVIVKPTEENHEAAHIPTKPFLSICYSVLHVLEKIGPTMAVLRQDVYQNIKRLELMHESNPTTNLNLVEILKMEATEGIAKKGSSCSKAFVWLTRTLDFTSSLLQILSNDPEKKMEKVVEESYEATLKPWHGWISSTAVRVALKLVPENKTFIDLLKTEDEDRDMLKQKMQILVSLLVPFLEDIHCILRLFNLDKLKST*