AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428050 MtrunA17_Chr3g0131161 96.930 456 13 1 1 456 1 455 0.0 912
Msa0428050 MtrunA17_Chr8g0356141 42.654 211 111 2 107 316 350 551 9.14e-45 166
Msa0428050 MtrunA17_Chr7g0267221 46.354 192 95 4 108 292 195 385 6.93e-44 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428050 AT5G23610.1 37.736 371 199 6 108 452 124 488 6.43e-77 249
Msa0428050 AT5G23610.2 37.634 372 199 6 108 452 124 489 9.17e-77 248
Msa0428050 AT5G51330.2 43.842 203 97 2 107 292 290 492 5.47e-45 166
Msa0428050 AT5G51330.1 43.842 203 97 2 107 292 294 496 6.07e-45 166

Find 184 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTTCTTCGCGCTTCT+TGG 0.208719 3_2:+78814134 Msa0428050:five_prime_UTR
TTTCTTGCAGGAGATGTTTA+TGG 0.210272 3_2:+78816734 Msa0428050:intron
CAACTTGTTGATAATGTTTC+AGG 0.228577 3_2:+78816632 Msa0428050:CDS
TTACTATCTGGAAAATATAT+TGG 0.261036 3_2:-78814990 None:intergenic
CGTAAATACATTGGTGATAC+TGG 0.271676 3_2:+78815401 Msa0428050:CDS
CCCGCCACCATTAAACTAAA+AGG 0.280995 3_2:-78817332 None:intergenic
AAGTTCAGTACTTCTTCATT+TGG 0.283704 3_2:-78815676 None:intergenic
CTTAGTACAGGTCGGGTTAT+TGG 0.284312 3_2:-78815368 None:intergenic
AGATCAAACTATACTGTAAA+AGG 0.292421 3_2:-78817046 None:intergenic
GGTGGTTATAATCCTATTCT+AGG 0.293975 3_2:-78816861 None:intergenic
TCCCTCCAGGTGCCACTTTA+CGG 0.303889 3_2:-78815454 None:intergenic
GTTCAACCCTGACGGAATTA+TGG 0.307173 3_2:+78815496 Msa0428050:CDS
TTTGCCAACCACTAAGTTCA+TGG 0.323165 3_2:+78816968 Msa0428050:three_prime_UTR
GTATTATTGTCTTGTTGGTT+AGG 0.328584 3_2:+78817106 Msa0428050:three_prime_UTR
GTCTTCAACAGGAATGAAAT+TGG 0.332023 3_2:+78817081 Msa0428050:three_prime_UTR
AGACATCTCTTTGAGGTATC+AGG 0.343221 3_2:+78816838 Msa0428050:exon
GATGACGTCCGCGAGGAGGC+TGG 0.343634 3_2:+78815545 Msa0428050:CDS
CATCGTCAACAGGCATTCAT+TGG 0.346643 3_2:+78814882 Msa0428050:CDS
TGAAGTGGAGCAACATCTTA+TGG 0.347796 3_2:+78816143 Msa0428050:CDS
CAGTATCACCAATGTATTTA+CGG 0.351183 3_2:-78815400 None:intergenic
GGTCTTTAGGTAGGCTTTGC+CGG 0.351234 3_2:+78817151 Msa0428050:three_prime_UTR
GTATATTAACAGGGCAAGTA+TGG 0.358640 3_2:+78816099 Msa0428050:intron
GGATACCACCATCCACTGTT+AGG 0.358688 3_2:+78815585 Msa0428050:CDS
TTAACAGTTGTAGAAGAATC+TGG 0.359007 3_2:-78816591 None:intergenic
CATTAGATCTACATTATTGT+AGG 0.362477 3_2:-78817486 None:intergenic
TCTTCATTGAGTGGCTGAAT+TGG 0.364573 3_2:-78816366 None:intergenic
CCGTCATCCTGAGTATTGTC+TGG 0.369164 3_2:-78816264 None:intergenic
GGTTGATCCTCTTGCATTGT+GGG 0.373824 3_2:-78816558 None:intergenic
GTGGATGGTGGTATCCAATA+GGG 0.379280 3_2:-78815578 None:intergenic
TTAGTACAGGTCGGGTTATT+GGG 0.379451 3_2:-78815367 None:intergenic
AACCTCTTCCATGAACTTAG+TGG 0.380359 3_2:-78816976 None:intergenic
CTGGGGTTGATGACCCCTAT+TGG 0.380387 3_2:+78815564 Msa0428050:CDS
AGTTCAGTACTTCTTCATTT+GGG 0.387011 3_2:-78815675 None:intergenic
GGCCATCCGTGCCCCTTGTC+AGG 0.402712 3_2:+78815607 Msa0428050:CDS
AGGTGTTACTGTTGTGTTAA+CGG 0.403039 3_2:-78813920 None:intergenic
GGATTCTTTGAAGAATTTGC+AGG 0.406927 3_2:+78815977 Msa0428050:CDS
GAAGAATCTGGGGTGACATT+AGG 0.411888 3_2:-78816579 None:intergenic
GATGTATCAAACACTGTATA+TGG 0.414656 3_2:+78816798 Msa0428050:CDS
TTCTTCTTTACTCTTAAAAC+TGG 0.421159 3_2:+78816899 Msa0428050:three_prime_UTR
ATTCAAATGGAAAGAAAAGA+TGG 0.422345 3_2:+78816761 Msa0428050:CDS
CGTCAGGGTTGAACCATCTT+CGG 0.426408 3_2:-78815487 None:intergenic
AGTGGATGGTGGTATCCAAT+AGG 0.428009 3_2:-78815579 None:intergenic
ACCAACTCGCACTGTGTTGT+CGG 0.428213 3_2:+78814097 Msa0428050:five_prime_UTR
AGTATGGTGAGTTCGCGATA+TGG 0.430148 3_2:+78816115 Msa0428050:CDS
TGCAAGTGCAAGTGCTTTGT+CGG 0.430693 3_2:-78814813 None:intergenic
TAGTTTAATGGTGGCGGGTG+GGG 0.432405 3_2:+78817337 Msa0428050:three_prime_UTR
GAAGAAAACTTGTGAAGAAA+AGG 0.432818 3_2:-78816882 None:intergenic
AAGTACAAGTTCTCATTGAA+TGG 0.433501 3_2:-78817195 None:intergenic
TTTGTTTAACTTAGAGCTGC+AGG 0.433568 3_2:+78814840 Msa0428050:five_prime_UTR
TGGTTGTATTATTGTCTTGT+TGG 0.436350 3_2:+78817101 Msa0428050:three_prime_UTR
GAGAAAGAAGCATGACAGTA+AGG 0.439317 3_2:+78815160 Msa0428050:CDS
GAAACTGCTTAAAATAGAAA+TGG 0.441793 3_2:+78815652 Msa0428050:CDS
GTTGCTAATGCAGCTGACTT+TGG 0.445231 3_2:+78814786 Msa0428050:intron
AGGATGACGGATTGGCAACT+TGG 0.448641 3_2:+78816277 Msa0428050:CDS
TGTTTATGGATTTATTCAAA+TGG 0.448971 3_2:+78816748 Msa0428050:CDS
AGCTGCAGGGATGGATAGGT+GGG 0.450023 3_2:+78814854 Msa0428050:exon
GTGGGGTTATGTGTCGCATA+TGG 0.455859 3_2:+78817354 Msa0428050:three_prime_UTR
AGTATCACCAATGTATTTAC+GGG 0.456584 3_2:-78815399 None:intergenic
TCATCTTGTAGATGTCCTAT+AGG 0.457242 3_2:+78817254 Msa0428050:three_prime_UTR
ATTTGAGGCAGGTCTTCAAC+AGG 0.457533 3_2:+78817070 Msa0428050:three_prime_UTR
CGGAATTATGGAGTATTGGT+TGG 0.461416 3_2:+78815508 Msa0428050:CDS
TTTGGATAGCAGAGATATGC+AGG 0.462744 3_2:+78815760 Msa0428050:intron
CTGACGGAATTATGGAGTAT+TGG 0.463406 3_2:+78815504 Msa0428050:CDS
GTGGGAGGTGCTGAAGGCAG+AGG 0.464284 3_2:+78815328 Msa0428050:CDS
ATGACGTCCGCGAGGAGGCT+GGG 0.464713 3_2:+78815546 Msa0428050:CDS
CAATACTCCATAATTCCGTC+AGG 0.466213 3_2:-78815503 None:intergenic
CTAAAAGTGGTGCACTCTCT+TGG 0.466483 3_2:-78816198 None:intergenic
TTAGTTTAATGGTGGCGGGT+GGG 0.466736 3_2:+78817336 Msa0428050:three_prime_UTR
CAACCGCCTAACTGAAATCA+TGG 0.467995 3_2:+78815956 Msa0428050:CDS
TTTAGTACAGGTCTTTAGGT+AGG 0.472068 3_2:+78817142 Msa0428050:three_prime_UTR
TGAGGTATCAGGCCTAGAAT+AGG 0.473853 3_2:+78816849 Msa0428050:three_prime_UTR
GTGGGGTGTTCATCGTCAAC+AGG 0.476341 3_2:+78814872 Msa0428050:CDS
ACCTCAATAAGCTGACCATA+AGG 0.476397 3_2:-78815095 None:intergenic
GTATAGTTTGATCTAATTTG+AGG 0.478849 3_2:+78817055 Msa0428050:three_prime_UTR
GAGCTGCAGGGATGGATAGG+TGG 0.485530 3_2:+78814853 Msa0428050:exon
TTTAGTTTAATGGTGGCGGG+TGG 0.486710 3_2:+78817335 Msa0428050:three_prime_UTR
AAGAATCCATGATTTCAGTT+AGG 0.487830 3_2:-78815962 None:intergenic
GGCATAAGAACAACTTAGTC+GGG 0.487977 3_2:-78817296 None:intergenic
TGGGAGGTGCTGAAGGCAGA+GGG 0.492323 3_2:+78815329 Msa0428050:CDS
TAACAGTTGTAGAAGAATCT+GGG 0.496287 3_2:-78816590 None:intergenic
AGCTGATCTTAGTACAGGTC+GGG 0.496477 3_2:-78815375 None:intergenic
AGCATGACAGTAAGGATAGA+TGG 0.497539 3_2:+78815168 Msa0428050:CDS
GGACTGATCGGTTCCGAAGA+TGG 0.500965 3_2:+78815474 Msa0428050:CDS
GCCTTATGGTCAGCTTATTG+AGG 0.505640 3_2:+78815094 Msa0428050:CDS
TGACGTCCGCGAGGAGGCTG+GGG 0.505696 3_2:+78815547 Msa0428050:CDS
CTAGCTAACATGTAAAATAC+CGG 0.506948 3_2:-78817170 None:intergenic
GACTATGATTTGAGCAATGT+GGG 0.508900 3_2:+78813987 Msa0428050:five_prime_UTR
AGGTTGATCCTCTTGCATTG+TGG 0.510835 3_2:-78816559 None:intergenic
AGTTTGATCTAATTTGAGGC+AGG 0.512861 3_2:+78817059 Msa0428050:three_prime_UTR
TTGGTTGGAGAGGGCTGACT+TGG 0.513352 3_2:+78815523 Msa0428050:CDS
ATCCTGACAAGGGGCACGGA+TGG 0.514234 3_2:-78815609 None:intergenic
TTAGTCAGTTCTTCATTGAG+TGG 0.514458 3_2:-78816375 None:intergenic
GAGGTGAAAGAGGAGTATGC+TGG 0.516120 3_2:+78815113 Msa0428050:CDS
GAAGAATCAGCATCCTGACA+AGG 0.520021 3_2:-78815620 None:intergenic
TTAGAGCTGCAGGGATGGAT+AGG 0.521038 3_2:+78814850 Msa0428050:exon
ATGAAGTAGACATCTCTTTG+AGG 0.522762 3_2:+78816831 Msa0428050:exon
GTCAACAGGCATTCATTGGT+TGG 0.523113 3_2:+78814886 Msa0428050:CDS
TTCTGTTACTAGGAAGGAAG+AGG 0.524484 3_2:+78814926 Msa0428050:CDS
GACGGATTGGCAACTTGGAT+AGG 0.527728 3_2:+78816282 Msa0428050:CDS
CTGAATTGGCATGCCTGAGT+AGG 0.528503 3_2:-78816352 None:intergenic
TTCTACAACTGTTAATTCAA+AGG 0.528922 3_2:+78816599 Msa0428050:CDS
AACCACTAAGTTCATGGAAG+AGG 0.533655 3_2:+78816974 Msa0428050:three_prime_UTR
GGTCAATGTGCTTCAGTAAG+TGG 0.534563 3_2:-78815433 None:intergenic
CGGGCAGCTGATCTTAGTAC+AGG 0.536563 3_2:-78815380 None:intergenic
GAAGCTTAGAGAGGTGAAAG+AGG 0.537563 3_2:+78815070 Msa0428050:CDS
TTGAAATAATAGTCATGTTG+AGG 0.537928 3_2:+78816527 Msa0428050:intron
CAGCTGATCTTAGTACAGGT+CGG 0.541011 3_2:-78815376 None:intergenic
ACGGATTGGCAACTTGGATA+GGG 0.541184 3_2:+78816283 Msa0428050:CDS
AAGCATGTGGGAGGTGCTGA+AGG 0.543073 3_2:+78815322 Msa0428050:CDS
GGGCATAAGAACAACTTAGT+CGG 0.545080 3_2:-78817297 None:intergenic
TTTCTTGAAGATCCCTACTC+AGG 0.547860 3_2:+78816339 Msa0428050:CDS
TCACCTCTCTAAGCTGACTA+AGG 0.547878 3_2:-78815031 None:intergenic
AAAGATGGAGCAGCAGCTGT+TGG 0.548685 3_2:+78816776 Msa0428050:CDS
TTCTGAAGGAGGACTAAAAG+TGG 0.548840 3_2:-78816211 None:intergenic
GATACCACCATCCACTGTTA+GGG 0.550025 3_2:+78815586 Msa0428050:CDS
GAAAACTGAAAGTAACATGA+TGG 0.552332 3_2:+78815805 Msa0428050:CDS
GGAGGTGCTGAAGGCAGAGG+GGG 0.552568 3_2:+78815331 Msa0428050:CDS
TATGGAGTATTGGTTGGAGA+GGG 0.553818 3_2:+78815514 Msa0428050:CDS
AGGTGAAAGAGGAGTATGCT+GGG 0.555325 3_2:+78815114 Msa0428050:CDS
TTGTTTAACTTAGAGCTGCA+GGG 0.555987 3_2:+78814841 Msa0428050:five_prime_UTR
CGGAACCGATCAGTCCCTCC+AGG 0.556285 3_2:-78815467 None:intergenic
TTAACTTAGAGCTGCAGGGA+TGG 0.557996 3_2:+78814845 Msa0428050:exon
GAAAACTTGTGAAGAAAAGG+TGG 0.559690 3_2:-78816879 None:intergenic
TTAGAATTCAACATCAGTGA+AGG 0.562148 3_2:-78817413 None:intergenic
CAATTTGCAGCTCAACAAGC+AGG 0.562189 3_2:-78817007 None:intergenic
CTCTAAGCTGACTAAGGCTG+AGG 0.562519 3_2:-78815025 None:intergenic
GCAGGAGCTCATTGCCCAGA+AGG 0.562853 3_2:+78815778 Msa0428050:CDS
AAGAACTGACTAACAAGAAG+AGG 0.565105 3_2:+78816385 Msa0428050:CDS
TGCAGCTCAACAAGCAGGTG+AGG 0.569589 3_2:-78817002 None:intergenic
GAAGCACATTGACCGTAAAG+TGG 0.570384 3_2:+78815442 Msa0428050:CDS
CTAAAAGGCAAGAGTAGCGA+GGG 0.571358 3_2:-78817317 None:intergenic
TGAATTGGCATGCCTGAGTA+GGG 0.572022 3_2:-78816351 None:intergenic
CGCGATATGGAAAACTGAAG+TGG 0.573314 3_2:+78816128 Msa0428050:CDS
TCAGCTTATTGAGGTGAAAG+AGG 0.574832 3_2:+78815103 Msa0428050:CDS
AATCCATGATTTCAGTTAGG+CGG 0.575656 3_2:-78815959 None:intergenic
TGGCACCTGGAGGGACTGAT+CGG 0.577271 3_2:+78815462 Msa0428050:CDS
CGTCATCCTGAGTATTGTCT+GGG 0.578265 3_2:-78816263 None:intergenic
CGAAGATGGTTCAACCCTGA+CGG 0.579824 3_2:+78815488 Msa0428050:CDS
TACTAGGAAGGAAGAGGACT+CGG 0.580045 3_2:+78814932 Msa0428050:CDS
ATTGTAGTATATGCCAAGGT+AGG 0.581707 3_2:-78817445 None:intergenic
CTTGGATGACGTCCGCGAGG+AGG 0.584682 3_2:+78815541 Msa0428050:CDS
TCTTCCATGAACTTAGTGGT+TGG 0.588265 3_2:-78816972 None:intergenic
CAGCATCCTGACAAGGGGCA+CGG 0.588448 3_2:-78815613 None:intergenic
CAATACTCAGGATGACGGAT+TGG 0.588917 3_2:+78816269 Msa0428050:CDS
CGGATGGCCCTAACAGTGGA+TGG 0.589422 3_2:-78815593 None:intergenic
CTTGCAAGGAACTTATGAAG+TGG 0.591648 3_2:+78815919 Msa0428050:CDS
TCTTCAAGAAAACACTCTTG+TGG 0.592785 3_2:-78816327 None:intergenic
TCTTCCTTCCTAGTAACAGA+AGG 0.594292 3_2:-78814924 None:intergenic
TTATGGAGTATTGGTTGGAG+AGG 0.594798 3_2:+78815513 Msa0428050:CDS
ACCGTAAAGTGGCACCTGGA+GGG 0.600671 3_2:+78815453 Msa0428050:CDS
TCAGCTGCCCGTAAATACAT+TGG 0.601607 3_2:+78815392 Msa0428050:CDS
GAGGTGAAAGAGGAGCCTTA+TGG 0.602537 3_2:+78815080 Msa0428050:CDS
AGGATAGATGGTCAAGCGAG+AGG 0.602598 3_2:+78815180 Msa0428050:CDS
CAGCCTTAGTCAGCTTAGAG+AGG 0.603304 3_2:+78815028 Msa0428050:CDS
CACTAACCCAGACAATACTC+AGG 0.613204 3_2:+78816257 Msa0428050:CDS
AAGAATCAGCATCCTGACAA+GGG 0.613306 3_2:-78815619 None:intergenic
TAGAATTCAACATCAGTGAA+GGG 0.620272 3_2:-78817412 None:intergenic
AATCTAATGTAGGTACAAGT+CGG 0.623854 3_2:+78815292 Msa0428050:intron
GAATATTGTAGTATATGCCA+AGG 0.623890 3_2:-78817449 None:intergenic
GGCACGGATGGCCCTAACAG+TGG 0.626312 3_2:-78815597 None:intergenic
ATTGACCGTAAAGTGGCACC+TGG 0.626391 3_2:+78815449 Msa0428050:CDS
GCTGATACCCACAATGCAAG+AGG 0.632260 3_2:+78816551 Msa0428050:CDS
ACTAAAAGGCAAGAGTAGCG+AGG 0.637851 3_2:-78817318 None:intergenic
CCAGACAATACTCAGGATGA+CGG 0.639358 3_2:+78816264 Msa0428050:CDS
AACAGTTGTAGAAGAATCTG+GGG 0.639407 3_2:-78816589 None:intergenic
TGACTATGATTTGAGCAATG+TGG 0.639748 3_2:+78813986 Msa0428050:five_prime_UTR
GCCGACAACACAGTGCGAGT+TGG 0.640849 3_2:-78814098 None:intergenic
TGGATGGTGGTATCCAATAG+GGG 0.643639 3_2:-78815577 None:intergenic
AGTCGGCTGAACAAAGCATG+TGG 0.643899 3_2:+78815309 Msa0428050:CDS
GTCGGCTGAACAAAGCATGT+GGG 0.649689 3_2:+78815310 Msa0428050:CDS
GTCTTGTGAGAAGCTTAGAG+AGG 0.651620 3_2:+78815061 Msa0428050:CDS
GGCTGAACAAAGCATGTGGG+AGG 0.654214 3_2:+78815313 Msa0428050:CDS
AACTGAAAGTAACATGATGG+AGG 0.656525 3_2:+78815808 Msa0428050:CDS
CATCAACCCCAGCCTCCTCG+CGG 0.661718 3_2:-78815553 None:intergenic
AGAATCAGCATCCTGACAAG+GGG 0.662008 3_2:-78815618 None:intergenic
GGGAGGTGCTGAAGGCAGAG+GGG 0.662463 3_2:+78815330 Msa0428050:CDS
GACCGTAAAGTGGCACCTGG+AGG 0.665408 3_2:+78815452 Msa0428050:CDS
TCTTTCACTACTTTCTCGCG+AGG 0.672061 3_2:-78813940 None:intergenic
AATACTCCATAATTCCGTCA+GGG 0.681790 3_2:-78815502 None:intergenic
TCAATGGCAGAAGACTTGCA+AGG 0.688837 3_2:+78815905 Msa0428050:intron
GCTGCAGGGATGGATAGGTG+GGG 0.693071 3_2:+78814855 Msa0428050:exon
ATGGCCCTAACAGTGGATGG+TGG 0.700088 3_2:-78815590 None:intergenic
ACTATGATTTGAGCAATGTG+GGG 0.707382 3_2:+78813988 Msa0428050:five_prime_UTR
TGACTTGGATGACGTCCGCG+AGG 0.712793 3_2:+78815538 Msa0428050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTAATAATTTTATT+TGG + chr3_2:78815742-78815761 Msa0428050:intron 10.0%
!! ATTAACTCTATATAATTACT+TGG - chr3_2:78815267-78815286 None:intergenic 15.0%
!!! TGAATGCTTTAATATTTTAA+TGG + chr3_2:78815838-78815857 Msa0428050:intron 15.0%
!! GTATATATTCAAGATTTAAT+GGG + chr3_2:78815999-78816018 Msa0428050:intron 15.0%
!! TTACTATCTGGAAAATATAT+TGG - chr3_2:78814993-78815012 None:intergenic 20.0%
!! GCTATCCAAATAAAATTATT+AGG - chr3_2:78815750-78815769 None:intergenic 20.0%
!! GGTATATATTCAAGATTTAA+TGG + chr3_2:78815998-78816017 Msa0428050:intron 20.0%
!!! AAATTAACTTTTTTCCTTCT+TGG - chr3_2:78816483-78816502 None:intergenic 20.0%
!! AATAGATCATGAATATAAGA+AGG - chr3_2:78816711-78816730 None:intergenic 20.0%
!! TGTTTATGGATTTATTCAAA+TGG + chr3_2:78816748-78816767 Msa0428050:CDS 20.0%
!!! TTCTCTTCTTACGTTATTTT+TGG + chr3_2:78814071-78814090 Msa0428050:five_prime_UTR 25.0%
! ATTGAAAAAATGGGAGAAAT+TGG - chr3_2:78814175-78814194 None:intergenic 25.0%
! AAAACGCGAATTGAAAAAAT+GGG - chr3_2:78814184-78814203 None:intergenic 25.0%
!! TCGTACTTTGTTTCTTAATT+TGG + chr3_2:78814241-78814260 Msa0428050:intron 25.0%
!! CGTACTTTGTTTCTTAATTT+GGG + chr3_2:78814242-78814261 Msa0428050:intron 25.0%
!! TTGTTTCTTAATTTGGGATT+AGG + chr3_2:78814248-78814267 Msa0428050:intron 25.0%
!! TGTTTCTTAATTTGGGATTA+GGG + chr3_2:78814249-78814268 Msa0428050:intron 25.0%
!!! TTGATTACTCTTTGATTTGA+TGG + chr3_2:78814398-78814417 Msa0428050:intron 25.0%
! AGGTTATATAGAGAAGATAT+TGG + chr3_2:78814442-78814461 Msa0428050:intron 25.0%
! AGTAAAAACATTGGATTTCT+TGG - chr3_2:78814537-78814556 None:intergenic 25.0%
! AATAGCTCATACATTAGAAA+AGG - chr3_2:78814566-78814585 None:intergenic 25.0%
!! TTTTCTAATGTATGAGCTAT+TGG + chr3_2:78814565-78814584 Msa0428050:intron 25.0%
! TTTCTAATGTATGAGCTATT+GGG + chr3_2:78814566-78814585 Msa0428050:intron 25.0%
! TTACAAACGACAGTTAATTA+TGG - chr3_2:78814621-78814640 None:intergenic 25.0%
! ATATGTGATTAAATCAACCT+TGG + chr3_2:78814705-78814724 Msa0428050:intron 25.0%
!! ATTTTCCAGATAGTAAGAAA+AGG + chr3_2:78814997-78815016 Msa0428050:CDS 25.0%
! AACTCTATATAATTACTTGG+TGG - chr3_2:78815264-78815283 None:intergenic 25.0%
! TTAATCATGCAATCTAATGT+AGG + chr3_2:78815282-78815301 Msa0428050:intron 25.0%
! GAAACTGCTTAAAATAGAAA+TGG + chr3_2:78815652-78815671 Msa0428050:CDS 25.0%
! TGCTTTATGTTGAATTTCAA+TGG + chr3_2:78815889-78815908 Msa0428050:intron 25.0%
! GGAGAAATCAAACAAATAAA+AGG - chr3_2:78816048-78816067 None:intergenic 25.0%
!! TGTAGTTCTGTATATTAACA+GGG + chr3_2:78816090-78816109 Msa0428050:intron 25.0%
! CAACATGACTATTATTTCAA+AGG - chr3_2:78816527-78816546 None:intergenic 25.0%
! TTGAAATAATAGTCATGTTG+AGG + chr3_2:78816527-78816546 Msa0428050:intron 25.0%
! TTCTACAACTGTTAATTCAA+AGG + chr3_2:78816599-78816618 Msa0428050:CDS 25.0%
!!! TGATCTATTATTTTTCTTGC+AGG + chr3_2:78816722-78816741 Msa0428050:intron 25.0%
! ATTCAAATGGAAAGAAAAGA+TGG + chr3_2:78816761-78816780 Msa0428050:CDS 25.0%
! TTCTTCTTTACTCTTAAAAC+TGG + chr3_2:78816899-78816918 Msa0428050:three_prime_UTR 25.0%
! AGATCAAACTATACTGTAAA+AGG - chr3_2:78817049-78817068 None:intergenic 25.0%
! GTATAGTTTGATCTAATTTG+AGG + chr3_2:78817055-78817074 Msa0428050:three_prime_UTR 25.0%
!! ATTTTGTAATTCACACCTAT+AGG - chr3_2:78817272-78817291 None:intergenic 25.0%
!! CTAATATAATTTTCCTACCT+TGG + chr3_2:78817432-78817451 Msa0428050:three_prime_UTR 25.0%
! CATTAGATCTACATTATTGT+AGG - chr3_2:78817489-78817508 None:intergenic 25.0%
!!! TAATCTGTTTTTGCATGTTA+AGG - chr3_2:78817521-78817540 None:intergenic 25.0%
AAAATGGGAGAAATTGGAAA+AGG - chr3_2:78814169-78814188 None:intergenic 30.0%
CAAAACGCGAATTGAAAAAA+TGG - chr3_2:78814185-78814204 None:intergenic 30.0%
!! TTCGTGATAATGTATTTTGC+TGG + chr3_2:78814360-78814379 Msa0428050:intron 30.0%
! ATAGAGAAGATATTGGTTGT+AGG + chr3_2:78814449-78814468 Msa0428050:intron 30.0%
! TAGAGAAGATATTGGTTGTA+GGG + chr3_2:78814450-78814469 Msa0428050:intron 30.0%
CAATAACCTAAAAGCTTAGT+AGG - chr3_2:78814746-78814765 None:intergenic 30.0%
AATCTAATGTAGGTACAAGT+CGG + chr3_2:78815292-78815311 Msa0428050:intron 30.0%
AGTATCACCAATGTATTTAC+GGG - chr3_2:78815402-78815421 None:intergenic 30.0%
CAGTATCACCAATGTATTTA+CGG - chr3_2:78815403-78815422 None:intergenic 30.0%
AGTTCAGTACTTCTTCATTT+GGG - chr3_2:78815678-78815697 None:intergenic 30.0%
AAGTTCAGTACTTCTTCATT+TGG - chr3_2:78815679-78815698 None:intergenic 30.0%
! TTCAGTTTTCTTTTCCTTCT+GGG - chr3_2:78815795-78815814 None:intergenic 30.0%
! TTTCAGTTTTCTTTTCCTTC+TGG - chr3_2:78815796-78815815 None:intergenic 30.0%
GAAAACTGAAAGTAACATGA+TGG + chr3_2:78815805-78815824 Msa0428050:CDS 30.0%
AAGAATCCATGATTTCAGTT+AGG - chr3_2:78815965-78815984 None:intergenic 30.0%
TAAGTCAGATATCACATAAG+TGG - chr3_2:78816069-78816088 None:intergenic 30.0%
! CTGTAGTTCTGTATATTAAC+AGG + chr3_2:78816089-78816108 Msa0428050:intron 30.0%
!! CAATCTTTCCATTTTTCTGA+AGG - chr3_2:78816228-78816247 None:intergenic 30.0%
CTTCAGAAAAATGGAAAGAT+TGG + chr3_2:78816226-78816245 Msa0428050:CDS 30.0%
TAACAGTTGTAGAAGAATCT+GGG - chr3_2:78816593-78816612 None:intergenic 30.0%
TTAACAGTTGTAGAAGAATC+TGG - chr3_2:78816594-78816613 None:intergenic 30.0%
!! CAACTTGTTGATAATGTTTC+AGG + chr3_2:78816632-78816651 Msa0428050:CDS 30.0%
AAGGAAAAAATGGGAATAAG+TGG - chr3_2:78816682-78816701 None:intergenic 30.0%
AGATCATGAATATAAGAAGG+TGG - chr3_2:78816708-78816727 None:intergenic 30.0%
GATGTATCAAACACTGTATA+TGG + chr3_2:78816798-78816817 Msa0428050:CDS 30.0%
GAAGAAAACTTGTGAAGAAA+AGG - chr3_2:78816885-78816904 None:intergenic 30.0%
TGGTTGTATTATTGTCTTGT+TGG + chr3_2:78817101-78817120 Msa0428050:three_prime_UTR 30.0%
! GTATTATTGTCTTGTTGGTT+AGG + chr3_2:78817106-78817125 Msa0428050:three_prime_UTR 30.0%
!! TTACCAGTTCTTTTTAGTAC+AGG + chr3_2:78817130-78817149 Msa0428050:three_prime_UTR 30.0%
!! TCTTTTTAGTACAGGTCTTT+AGG + chr3_2:78817138-78817157 Msa0428050:three_prime_UTR 30.0%
CTAGCTAACATGTAAAATAC+CGG - chr3_2:78817173-78817192 None:intergenic 30.0%
AAGTACAAGTTCTCATTGAA+TGG - chr3_2:78817198-78817217 None:intergenic 30.0%
!!! ACTCTTGCCTTTTAGTTTAA+TGG + chr3_2:78817325-78817344 Msa0428050:three_prime_UTR 30.0%
TAGAATTCAACATCAGTGAA+GGG - chr3_2:78817415-78817434 None:intergenic 30.0%
TTAGAATTCAACATCAGTGA+AGG - chr3_2:78817416-78817435 None:intergenic 30.0%
GAATATTGTAGTATATGCCA+AGG - chr3_2:78817452-78817471 None:intergenic 30.0%
!! AGGTGTTACTGTTGTGTTAA+CGG - chr3_2:78813923-78813942 None:intergenic 35.0%
TGACTATGATTTGAGCAATG+TGG + chr3_2:78813986-78814005 Msa0428050:five_prime_UTR 35.0%
GACTATGATTTGAGCAATGT+GGG + chr3_2:78813987-78814006 Msa0428050:five_prime_UTR 35.0%
ACTATGATTTGAGCAATGTG+GGG + chr3_2:78813988-78814007 Msa0428050:five_prime_UTR 35.0%
GAAACAAAGTACGAAGAAAC+TGG - chr3_2:78814235-78814254 None:intergenic 35.0%
TAGTGAAGTGAAATGCGATA+AGG + chr3_2:78814422-78814441 Msa0428050:intron 35.0%
AGGCAAGCAAGTAAAAACAT+TGG - chr3_2:78814546-78814565 None:intergenic 35.0%
! TTTGTTTAACTTAGAGCTGC+AGG + chr3_2:78814840-78814859 Msa0428050:five_prime_UTR 35.0%
! TTGTTTAACTTAGAGCTGCA+GGG + chr3_2:78814841-78814860 Msa0428050:five_prime_UTR 35.0%
! GTTCTTTTCCTTCTGTTACT+AGG + chr3_2:78814916-78814935 Msa0428050:CDS 35.0%
! TTTTCCTTCTGTTACTAGGA+AGG + chr3_2:78814920-78814939 Msa0428050:CDS 35.0%
! CGTAAATACATTGGTGATAC+TGG + chr3_2:78815401-78815420 Msa0428050:CDS 35.0%
AATACTCCATAATTCCGTCA+GGG - chr3_2:78815505-78815524 None:intergenic 35.0%
AACTGAAAGTAACATGATGG+AGG + chr3_2:78815808-78815827 Msa0428050:CDS 35.0%
AATCCATGATTTCAGTTAGG+CGG - chr3_2:78815962-78815981 None:intergenic 35.0%
! GGATTCTTTGAAGAATTTGC+AGG + chr3_2:78815977-78815996 Msa0428050:CDS 35.0%
GTATATTAACAGGGCAAGTA+TGG + chr3_2:78816099-78816118 Msa0428050:intron 35.0%
TTAGTCCTCCTTCAGAAAAA+TGG + chr3_2:78816217-78816236 Msa0428050:CDS 35.0%
!! TCTTTCCATTTTTCTGAAGG+AGG - chr3_2:78816225-78816244 None:intergenic 35.0%
TCTTCAAGAAAACACTCTTG+TGG - chr3_2:78816330-78816349 None:intergenic 35.0%
TTAGTCAGTTCTTCATTGAG+TGG - chr3_2:78816378-78816397 None:intergenic 35.0%
AAGAACTGACTAACAAGAAG+AGG + chr3_2:78816385-78816404 Msa0428050:CDS 35.0%
AACAGTTGTAGAAGAATCTG+GGG - chr3_2:78816592-78816611 None:intergenic 35.0%
AGGTGGTAGAAGGAAAAAAT+GGG - chr3_2:78816691-78816710 None:intergenic 35.0%
AAGGTGGTAGAAGGAAAAAA+TGG - chr3_2:78816692-78816711 None:intergenic 35.0%
GAATATAAGAAGGTGGTAGA+AGG - chr3_2:78816701-78816720 None:intergenic 35.0%
TTTCTTGCAGGAGATGTTTA+TGG + chr3_2:78816734-78816753 Msa0428050:intron 35.0%
ATGAAGTAGACATCTCTTTG+AGG + chr3_2:78816831-78816850 Msa0428050:exon 35.0%
GGTGGTTATAATCCTATTCT+AGG - chr3_2:78816864-78816883 None:intergenic 35.0%
GAAAACTTGTGAAGAAAAGG+TGG - chr3_2:78816882-78816901 None:intergenic 35.0%
! AGTTTGATCTAATTTGAGGC+AGG + chr3_2:78817059-78817078 Msa0428050:three_prime_UTR 35.0%
GTCTTCAACAGGAATGAAAT+TGG + chr3_2:78817081-78817100 Msa0428050:three_prime_UTR 35.0%
AGACCTGTACTAAAAAGAAC+TGG - chr3_2:78817136-78817155 None:intergenic 35.0%
TTTAGTACAGGTCTTTAGGT+AGG + chr3_2:78817142-78817161 Msa0428050:three_prime_UTR 35.0%
TCATCTTGTAGATGTCCTAT+AGG + chr3_2:78817254-78817273 Msa0428050:three_prime_UTR 35.0%
!!! CTTGCCTTTTAGTTTAATGG+TGG + chr3_2:78817328-78817347 Msa0428050:three_prime_UTR 35.0%
ATTGTAGTATATGCCAAGGT+AGG - chr3_2:78817448-78817467 None:intergenic 35.0%
!!! CTGTTTTTGCATGTTAAGGT+AGG - chr3_2:78817517-78817536 None:intergenic 35.0%
! TTTGAGCAATGTGGGGTTTT+TGG + chr3_2:78813995-78814014 Msa0428050:five_prime_UTR 40.0%
! AATCAACCTTGGTGATCCAA+TGG + chr3_2:78814716-78814735 Msa0428050:intron 40.0%
AAGCTTAGTAGGTGATCCAT+TGG - chr3_2:78814735-78814754 None:intergenic 40.0%
! GGATCACCTACTAAGCTTTT+AGG + chr3_2:78814737-78814756 Msa0428050:intron 40.0%
TCTTCCTTCCTAGTAACAGA+AGG - chr3_2:78814927-78814946 None:intergenic 40.0%
TTCTGTTACTAGGAAGGAAG+AGG + chr3_2:78814926-78814945 Msa0428050:CDS 40.0%
! CGCTTCCTTTTCTTACTATC+TGG - chr3_2:78815005-78815024 None:intergenic 40.0%
ACCTCAATAAGCTGACCATA+AGG - chr3_2:78815098-78815117 None:intergenic 40.0%
TCAGCTTATTGAGGTGAAAG+AGG + chr3_2:78815103-78815122 Msa0428050:CDS 40.0%
! GAGAAAGAAGCATGACAGTA+AGG + chr3_2:78815160-78815179 Msa0428050:CDS 40.0%
AGCATGACAGTAAGGATAGA+TGG + chr3_2:78815168-78815187 Msa0428050:CDS 40.0%
TTAGTACAGGTCGGGTTATT+GGG - chr3_2:78815370-78815389 None:intergenic 40.0%
CAATACTCCATAATTCCGTC+AGG - chr3_2:78815506-78815525 None:intergenic 40.0%
CTGACGGAATTATGGAGTAT+TGG + chr3_2:78815504-78815523 Msa0428050:CDS 40.0%
!! CGGAATTATGGAGTATTGGT+TGG + chr3_2:78815508-78815527 Msa0428050:CDS 40.0%
!! TTATGGAGTATTGGTTGGAG+AGG + chr3_2:78815513-78815532 Msa0428050:CDS 40.0%
!! TATGGAGTATTGGTTGGAGA+GGG + chr3_2:78815514-78815533 Msa0428050:CDS 40.0%
AAGAATCAGCATCCTGACAA+GGG - chr3_2:78815622-78815641 None:intergenic 40.0%
TTTGGATAGCAGAGATATGC+AGG + chr3_2:78815760-78815779 Msa0428050:intron 40.0%
CTTGCAAGGAACTTATGAAG+TGG + chr3_2:78815919-78815938 Msa0428050:CDS 40.0%
TGAAGTGGAGCAACATCTTA+TGG + chr3_2:78816143-78816162 Msa0428050:CDS 40.0%
! TTCTGAAGGAGGACTAAAAG+TGG - chr3_2:78816214-78816233 None:intergenic 40.0%
TTTCTTGAAGATCCCTACTC+AGG + chr3_2:78816339-78816358 Msa0428050:CDS 40.0%
TCTTCATTGAGTGGCTGAAT+TGG - chr3_2:78816369-78816388 None:intergenic 40.0%
!! AGACATCTCTTTGAGGTATC+AGG + chr3_2:78816838-78816857 Msa0428050:exon 40.0%
TTTGCCAACCACTAAGTTCA+TGG + chr3_2:78816968-78816987 Msa0428050:three_prime_UTR 40.0%
TCTTCCATGAACTTAGTGGT+TGG - chr3_2:78816975-78816994 None:intergenic 40.0%
AACCACTAAGTTCATGGAAG+AGG + chr3_2:78816974-78816993 Msa0428050:three_prime_UTR 40.0%
AACCTCTTCCATGAACTTAG+TGG - chr3_2:78816979-78816998 None:intergenic 40.0%
GGCATAAGAACAACTTAGTC+GGG - chr3_2:78817299-78817318 None:intergenic 40.0%
GGGCATAAGAACAACTTAGT+CGG - chr3_2:78817300-78817319 None:intergenic 40.0%
!!! GCCTTTTAGTTTAATGGTGG+CGG + chr3_2:78817331-78817350 Msa0428050:three_prime_UTR 40.0%
!!! CCTTTTAGTTTAATGGTGGC+GGG + chr3_2:78817332-78817351 Msa0428050:three_prime_UTR 40.0%
TCTTTCACTACTTTCTCGCG+AGG - chr3_2:78813943-78813962 None:intergenic 45.0%
! GTTGCTAATGCAGCTGACTT+TGG + chr3_2:78814786-78814805 Msa0428050:intron 45.0%
TGCAAGTGCAAGTGCTTTGT+CGG - chr3_2:78814816-78814835 None:intergenic 45.0%
TTAACTTAGAGCTGCAGGGA+TGG + chr3_2:78814845-78814864 Msa0428050:exon 45.0%
CATCGTCAACAGGCATTCAT+TGG + chr3_2:78814882-78814901 Msa0428050:CDS 45.0%
GTCAACAGGCATTCATTGGT+TGG + chr3_2:78814886-78814905 Msa0428050:CDS 45.0%
TACTAGGAAGGAAGAGGACT+CGG + chr3_2:78814932-78814951 Msa0428050:CDS 45.0%
TCACCTCTCTAAGCTGACTA+AGG - chr3_2:78815034-78815053 None:intergenic 45.0%
GTCTTGTGAGAAGCTTAGAG+AGG + chr3_2:78815061-78815080 Msa0428050:CDS 45.0%
GAAGCTTAGAGAGGTGAAAG+AGG + chr3_2:78815070-78815089 Msa0428050:CDS 45.0%
GCCTTATGGTCAGCTTATTG+AGG + chr3_2:78815094-78815113 Msa0428050:CDS 45.0%
! AGGTGAAAGAGGAGTATGCT+GGG + chr3_2:78815114-78815133 Msa0428050:CDS 45.0%
CTTAGTACAGGTCGGGTTAT+TGG - chr3_2:78815371-78815390 None:intergenic 45.0%
AGCTGATCTTAGTACAGGTC+GGG - chr3_2:78815378-78815397 None:intergenic 45.0%
CAGCTGATCTTAGTACAGGT+CGG - chr3_2:78815379-78815398 None:intergenic 45.0%
TCAGCTGCCCGTAAATACAT+TGG + chr3_2:78815392-78815411 Msa0428050:CDS 45.0%
GGTCAATGTGCTTCAGTAAG+TGG - chr3_2:78815436-78815455 None:intergenic 45.0%
GAAGCACATTGACCGTAAAG+TGG + chr3_2:78815442-78815461 Msa0428050:CDS 45.0%
GTTCAACCCTGACGGAATTA+TGG + chr3_2:78815496-78815515 Msa0428050:CDS 45.0%
! TGGATGGTGGTATCCAATAG+GGG - chr3_2:78815580-78815599 None:intergenic 45.0%
! GTGGATGGTGGTATCCAATA+GGG - chr3_2:78815581-78815600 None:intergenic 45.0%
! AGTGGATGGTGGTATCCAAT+AGG - chr3_2:78815582-78815601 None:intergenic 45.0%
GATACCACCATCCACTGTTA+GGG + chr3_2:78815586-78815605 Msa0428050:CDS 45.0%
AGAATCAGCATCCTGACAAG+GGG - chr3_2:78815621-78815640 None:intergenic 45.0%
GAAGAATCAGCATCCTGACA+AGG - chr3_2:78815623-78815642 None:intergenic 45.0%
TCAATGGCAGAAGACTTGCA+AGG + chr3_2:78815905-78815924 Msa0428050:intron 45.0%
CAACCGCCTAACTGAAATCA+TGG + chr3_2:78815956-78815975 Msa0428050:CDS 45.0%
AGTATGGTGAGTTCGCGATA+TGG + chr3_2:78816115-78816134 Msa0428050:CDS 45.0%
CGCGATATGGAAAACTGAAG+TGG + chr3_2:78816128-78816147 Msa0428050:CDS 45.0%
CTAAAAGTGGTGCACTCTCT+TGG - chr3_2:78816201-78816220 None:intergenic 45.0%
CACTAACCCAGACAATACTC+AGG + chr3_2:78816257-78816276 Msa0428050:CDS 45.0%
! CGTCATCCTGAGTATTGTCT+GGG - chr3_2:78816266-78816285 None:intergenic 45.0%
CCAGACAATACTCAGGATGA+CGG + chr3_2:78816264-78816283 Msa0428050:CDS 45.0%
!! CAATACTCAGGATGACGGAT+TGG + chr3_2:78816269-78816288 Msa0428050:CDS 45.0%
!! ACGGATTGGCAACTTGGATA+GGG + chr3_2:78816283-78816302 Msa0428050:CDS 45.0%
TGAATTGGCATGCCTGAGTA+GGG - chr3_2:78816354-78816373 None:intergenic 45.0%
AGATGTGCGTGCATGTTTGA+GGG - chr3_2:78816443-78816462 None:intergenic 45.0%
!! TCTTGGTTTTTCCACCTCCA+AGG - chr3_2:78816466-78816485 None:intergenic 45.0%
TGGAGGTGGAAAAACCAAGA+AGG + chr3_2:78816466-78816485 Msa0428050:intron 45.0%
GGTTGATCCTCTTGCATTGT+GGG - chr3_2:78816561-78816580 None:intergenic 45.0%
! AGGTTGATCCTCTTGCATTG+TGG - chr3_2:78816562-78816581 None:intergenic 45.0%
! GAAGAATCTGGGGTGACATT+AGG - chr3_2:78816582-78816601 None:intergenic 45.0%
! TGAGGTATCAGGCCTAGAAT+AGG + chr3_2:78816849-78816868 Msa0428050:three_prime_UTR 45.0%
CAATTTGCAGCTCAACAAGC+AGG - chr3_2:78817010-78817029 None:intergenic 45.0%
! ATTTGAGGCAGGTCTTCAAC+AGG + chr3_2:78817070-78817089 Msa0428050:three_prime_UTR 45.0%
CTAAAAGGCAAGAGTAGCGA+GGG - chr3_2:78817320-78817339 None:intergenic 45.0%
ACTAAAAGGCAAGAGTAGCG+AGG - chr3_2:78817321-78817340 None:intergenic 45.0%
CCCGCCACCATTAAACTAAA+AGG - chr3_2:78817335-78817354 None:intergenic 45.0%
!! TTTAGTTTAATGGTGGCGGG+TGG + chr3_2:78817335-78817354 Msa0428050:three_prime_UTR 45.0%
!! TTAGTTTAATGGTGGCGGGT+GGG + chr3_2:78817336-78817355 Msa0428050:three_prime_UTR 45.0%
!!! AATATCAAAATAATATTTTA+TGG + chr3_2:78815707-78815726 Msa0428050:intron 5.0%
!! GAGCAATGTGGGGTTTTTGG+CGG + chr3_2:78813998-78814017 Msa0428050:five_prime_UTR 50.0%
!!! ATGTGGGGTTTTTGGCGGTT+AGG + chr3_2:78814003-78814022 Msa0428050:five_prime_UTR 50.0%
!!! TGTGGGGTTTTTGGCGGTTA+GGG + chr3_2:78814004-78814023 Msa0428050:five_prime_UTR 50.0%
ACCAACTCGCACTGTGTTGT+CGG + chr3_2:78814097-78814116 Msa0428050:five_prime_UTR 50.0%
TCTCTCTTCTTCGCGCTTCT+TGG + chr3_2:78814134-78814153 Msa0428050:five_prime_UTR 50.0%
TCTTCTTCGCGCTTCTTGGT+AGG + chr3_2:78814138-78814157 Msa0428050:intron 50.0%
CTTCTTCGCGCTTCTTGGTA+GGG + chr3_2:78814139-78814158 Msa0428050:intron 50.0%
GGTGATCCATTGGATCACCA+AGG - chr3_2:78814725-78814744 None:intergenic 50.0%
TTAGAGCTGCAGGGATGGAT+AGG + chr3_2:78814850-78814869 Msa0428050:exon 50.0%
CTCTAAGCTGACTAAGGCTG+AGG - chr3_2:78815028-78815047 None:intergenic 50.0%
CAGCCTTAGTCAGCTTAGAG+AGG + chr3_2:78815028-78815047 Msa0428050:CDS 50.0%
GAGGTGAAAGAGGAGCCTTA+TGG + chr3_2:78815080-78815099 Msa0428050:CDS 50.0%
! GAGGTGAAAGAGGAGTATGC+TGG + chr3_2:78815113-78815132 Msa0428050:CDS 50.0%
AGGATAGATGGTCAAGCGAG+AGG + chr3_2:78815180-78815199 Msa0428050:CDS 50.0%
AGTCGGCTGAACAAAGCATG+TGG + chr3_2:78815309-78815328 Msa0428050:CDS 50.0%
GTCGGCTGAACAAAGCATGT+GGG + chr3_2:78815310-78815329 Msa0428050:CDS 50.0%
ATTGACCGTAAAGTGGCACC+TGG + chr3_2:78815449-78815468 Msa0428050:CDS 50.0%
CGTCAGGGTTGAACCATCTT+CGG - chr3_2:78815490-78815509 None:intergenic 50.0%
CGAAGATGGTTCAACCCTGA+CGG + chr3_2:78815488-78815507 Msa0428050:CDS 50.0%
GGATACCACCATCCACTGTT+AGG + chr3_2:78815585-78815604 Msa0428050:CDS 50.0%
! CCGTCATCCTGAGTATTGTC+TGG - chr3_2:78816267-78816286 None:intergenic 50.0%
!! AGGATGACGGATTGGCAACT+TGG + chr3_2:78816277-78816296 Msa0428050:CDS 50.0%
!! GACGGATTGGCAACTTGGAT+AGG + chr3_2:78816282-78816301 Msa0428050:CDS 50.0%
CTGAATTGGCATGCCTGAGT+AGG - chr3_2:78816355-78816374 None:intergenic 50.0%
TGCGTGCATGTTTGAGGGTT+TGG - chr3_2:78816438-78816457 None:intergenic 50.0%
GAGATGTGCGTGCATGTTTG+AGG - chr3_2:78816444-78816463 None:intergenic 50.0%
AACATGCACGCACATCTCCT+TGG + chr3_2:78816446-78816465 Msa0428050:intron 50.0%
GCTGATACCCACAATGCAAG+AGG + chr3_2:78816551-78816570 Msa0428050:CDS 50.0%
AAAGATGGAGCAGCAGCTGT+TGG + chr3_2:78816776-78816795 Msa0428050:CDS 50.0%
GGTCTTTAGGTAGGCTTTGC+CGG + chr3_2:78817151-78817170 Msa0428050:three_prime_UTR 50.0%
!! TAGTTTAATGGTGGCGGGTG+GGG + chr3_2:78817337-78817356 Msa0428050:three_prime_UTR 50.0%
GTGGGGTTATGTGTCGCATA+TGG + chr3_2:78817354-78817373 Msa0428050:three_prime_UTR 50.0%
AGCTGCAGGGATGGATAGGT+GGG + chr3_2:78814854-78814873 Msa0428050:exon 55.0%
! GTGGGGTGTTCATCGTCAAC+AGG + chr3_2:78814872-78814891 Msa0428050:CDS 55.0%
GGCTGAACAAAGCATGTGGG+AGG + chr3_2:78815313-78815332 Msa0428050:CDS 55.0%
!! AAGCATGTGGGAGGTGCTGA+AGG + chr3_2:78815322-78815341 Msa0428050:CDS 55.0%
CGGGCAGCTGATCTTAGTAC+AGG - chr3_2:78815383-78815402 None:intergenic 55.0%
ACCGTAAAGTGGCACCTGGA+GGG + chr3_2:78815453-78815472 Msa0428050:CDS 55.0%
!! TCCCTCCAGGTGCCACTTTA+CGG - chr3_2:78815457-78815476 None:intergenic 55.0%
! GGACTGATCGGTTCCGAAGA+TGG + chr3_2:78815474-78815493 Msa0428050:CDS 55.0%
TTGGTTGGAGAGGGCTGACT+TGG + chr3_2:78815523-78815542 Msa0428050:CDS 55.0%
!! CTGGGGTTGATGACCCCTAT+TGG + chr3_2:78815564-78815583 Msa0428050:CDS 55.0%
ATGGCCCTAACAGTGGATGG+TGG - chr3_2:78815593-78815612 None:intergenic 55.0%
ATGCACGCACATCTCCTTGG+AGG + chr3_2:78816449-78816468 Msa0428050:intron 55.0%
TGCAGCTCAACAAGCAGGTG+AGG - chr3_2:78817005-78817024 None:intergenic 55.0%
GCCGACAACACAGTGCGAGT+TGG - chr3_2:78814101-78814120 None:intergenic 60.0%
GAGCTGCAGGGATGGATAGG+TGG + chr3_2:78814853-78814872 Msa0428050:exon 60.0%
GCTGCAGGGATGGATAGGTG+GGG + chr3_2:78814855-78814874 Msa0428050:exon 60.0%
!! TGGGAGGTGCTGAAGGCAGA+GGG + chr3_2:78815329-78815348 Msa0428050:CDS 60.0%
GACCGTAAAGTGGCACCTGG+AGG + chr3_2:78815452-78815471 Msa0428050:CDS 60.0%
TGGCACCTGGAGGGACTGAT+CGG + chr3_2:78815462-78815481 Msa0428050:CDS 60.0%
! TGACTTGGATGACGTCCGCG+AGG + chr3_2:78815538-78815557 Msa0428050:CDS 60.0%
CGGATGGCCCTAACAGTGGA+TGG - chr3_2:78815596-78815615 None:intergenic 60.0%
! ATCCTGACAAGGGGCACGGA+TGG - chr3_2:78815612-78815631 None:intergenic 60.0%
CAGCATCCTGACAAGGGGCA+CGG - chr3_2:78815616-78815635 None:intergenic 60.0%
GCAGGAGCTCATTGCCCAGA+AGG + chr3_2:78815778-78815797 Msa0428050:CDS 60.0%
CACGCACATCTCCTTGGAGG+TGG + chr3_2:78816452-78816471 Msa0428050:intron 60.0%
!! GTGGGAGGTGCTGAAGGCAG+AGG + chr3_2:78815328-78815347 Msa0428050:CDS 65.0%
!! GGGAGGTGCTGAAGGCAGAG+GGG + chr3_2:78815330-78815349 Msa0428050:CDS 65.0%
!! GGAGGTGCTGAAGGCAGAGG+GGG + chr3_2:78815331-78815350 Msa0428050:CDS 65.0%
CGGAACCGATCAGTCCCTCC+AGG - chr3_2:78815470-78815489 None:intergenic 65.0%
CTTGGATGACGTCCGCGAGG+AGG + chr3_2:78815541-78815560 Msa0428050:CDS 65.0%
ATGACGTCCGCGAGGAGGCT+GGG + chr3_2:78815546-78815565 Msa0428050:CDS 65.0%
CATCAACCCCAGCCTCCTCG+CGG - chr3_2:78815556-78815575 None:intergenic 65.0%
GGCACGGATGGCCCTAACAG+TGG - chr3_2:78815600-78815619 None:intergenic 65.0%
GATGACGTCCGCGAGGAGGC+TGG + chr3_2:78815545-78815564 Msa0428050:CDS 70.0%
TGACGTCCGCGAGGAGGCTG+GGG + chr3_2:78815547-78815566 Msa0428050:CDS 70.0%
GGCCATCCGTGCCCCTTGTC+AGG + chr3_2:78815607-78815626 Msa0428050:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78813918 78817550 78813918 ID=Msa0428050;Name=Msa0428050
chr3_2 mRNA 78813918 78817550 78813918 ID=Msa0428050-mRNA-1;Parent=Msa0428050;Name=Msa0428050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=303|1|1|1|0.85|0.75|8|711|456
chr3_2 exon 78813918 78814155 78813918 ID=Msa0428050-mRNA-1:exon:21036;Parent=Msa0428050-mRNA-1
chr3_2 exon 78814799 78815201 78814799 ID=Msa0428050-mRNA-1:exon:21037;Parent=Msa0428050-mRNA-1
chr3_2 exon 78815304 78815687 78815304 ID=Msa0428050-mRNA-1:exon:21038;Parent=Msa0428050-mRNA-1
chr3_2 exon 78815772 78815829 78815772 ID=Msa0428050-mRNA-1:exon:21039;Parent=Msa0428050-mRNA-1
chr3_2 exon 78815915 78815998 78815915 ID=Msa0428050-mRNA-1:exon:21040;Parent=Msa0428050-mRNA-1
chr3_2 exon 78816111 78816406 78816111 ID=Msa0428050-mRNA-1:exon:21041;Parent=Msa0428050-mRNA-1
chr3_2 exon 78816539 78816653 78816539 ID=Msa0428050-mRNA-1:exon:21042;Parent=Msa0428050-mRNA-1
chr3_2 exon 78816744 78817550 78816744 ID=Msa0428050-mRNA-1:exon:21043;Parent=Msa0428050-mRNA-1
chr3_2 five_prime_UTR 78813918 78814155 78813918 ID=Msa0428050-mRNA-1:five_prime_utr;Parent=Msa0428050-mRNA-1
chr3_2 five_prime_UTR 78814799 78814863 78814799 ID=Msa0428050-mRNA-1:five_prime_utr;Parent=Msa0428050-mRNA-1
chr3_2 CDS 78814864 78815201 78814864 ID=Msa0428050-mRNA-1:cds;Parent=Msa0428050-mRNA-1
chr3_2 CDS 78815304 78815687 78815304 ID=Msa0428050-mRNA-1:cds;Parent=Msa0428050-mRNA-1
chr3_2 CDS 78815772 78815829 78815772 ID=Msa0428050-mRNA-1:cds;Parent=Msa0428050-mRNA-1
chr3_2 CDS 78815915 78815998 78815915 ID=Msa0428050-mRNA-1:cds;Parent=Msa0428050-mRNA-1
chr3_2 CDS 78816111 78816406 78816111 ID=Msa0428050-mRNA-1:cds;Parent=Msa0428050-mRNA-1
chr3_2 CDS 78816539 78816653 78816539 ID=Msa0428050-mRNA-1:cds;Parent=Msa0428050-mRNA-1
chr3_2 CDS 78816744 78816839 78816744 ID=Msa0428050-mRNA-1:cds;Parent=Msa0428050-mRNA-1
chr3_2 three_prime_UTR 78816840 78817550 78816840 ID=Msa0428050-mRNA-1:three_prime_utr;Parent=Msa0428050-mRNA-1
Gene Sequence

>Msa0428050

ATGGATAGGTGGGGTGTTCATCGTCAACAGGCATTCATTGGTTGGCGTGCAAGTTCTTTTCCTTCTGTTACTAGGAAGGAAGAGGACTCGGACAACGACAGAGAAGAAGTAAATGTTAAGAATGAACCAATATATTTTCCAGATAGTAAGAAAAGGAAGCGCCTCAGCCTTAGTCAGCTTAGAGAGGTGAAAGTAGAGTCTTGTGAGAAGCTTAGAGAGGTGAAAGAGGAGCCTTATGGTCAGCTTATTGAGGTGAAAGAGGAGTATGCTGGGAATCAAAGCAGTAGCAAGAATAAGAGAAAGAAGCATGACAGTAAGGATAGATGGTCAAGCGAGAGGTACAAGTCGGCTGAACAAAGCATGTGGGAGGTGCTGAAGGCAGAGGGGGCGACTTTTGAACACCCAATAACCCGACCTGTACTAAGATCAGCTGCCCGTAAATACATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGACCGTAAAGTGGCACCTGGAGGGACTGATCGGTTCCGAAGATGGTTCAACCCTGACGGAATTATGGAGTATTGGTTGGAGAGGGCTGACTTGGATGACGTCCGCGAGGAGGCTGGGGTTGATGACCCCTATTGGATACCACCATCCACTGTTAGGGCCATCCGTGCCCCTTGTCAGGATGCTGATTCTTCTGCTGAATTGAAACTGCTTAAAATAGAAATGGCCCAAATGAAGAAAGATATGCAGGAGCTCATTGCCCAGAAGGAAAAGAAAACTGAAAGTAACATGATGGAGAAGACTTGCAAGGAACTTATGAAGTGGAAAGCTAAAACTGACAACCGCCTAACTGAAATCATGGATTCTTTGAAGAATTTGCAGGGCAAGTATGGTGAGTTCGCGATATGGAAAACTGAAGTGGAGCAACATCTTATGGATATAACAAATAAATTGAATGCTCTTCAAGCACCAAGAGAGTGCACCACTTTTAGTCCTCCTTCAGAAAAATGGAAAGATTGGTTAGAAAACACTAACCCAGACAATACTCAGGATGACGGATTGGCAACTTGGATAGGGAGTTCAGAACTATTTAATGTTCCACAAGAGTGTTTTCTTGAAGATCCCTACTCAGGCATGCCAATTCAGCCACTCAATGAAGAACTGACTAACAAGAAGAGTCATGTTGAGGAGCTGATACCCACAATGCAAGAGGATCAACCTAATGTCACCCCAGATTCTTCTACAACTGTTAATTCAAAGGCAGACGTTGACAACTTGTTGATAATGTTTCAGGAGATGTTTATGGATTTATTCAAATGGAAAGAAAAGATGGAGCAGCAGCTGTTGGATGTATCAAACACTGTATATGGCATGCTAGCAATGAAGTAG

Protein sequence

>Msa0428050

MDRWGVHRQQAFIGWRASSFPSVTRKEEDSDNDREEVNVKNEPIYFPDSKKRKRLSLSQLREVKVESCEKLREVKEEPYGQLIEVKEEYAGNQSSSKNKRKKHDSKDRWSSERYKSAEQSMWEVLKAEGATFEHPITRPVLRSAARKYIGDTGLLDHLLKHIDRKVAPGGTDRFRRWFNPDGIMEYWLERADLDDVREEAGVDDPYWIPPSTVRAIRAPCQDADSSAELKLLKIEMAQMKKDMQELIAQKEKKTESNMMEKTCKELMKWKAKTDNRLTEIMDSLKNLQGKYGEFAIWKTEVEQHLMDITNKLNALQAPRECTTFSPPSEKWKDWLENTNPDNTQDDGLATWIGSSELFNVPQECFLEDPYSGMPIQPLNEELTNKKSHVEELIPTMQEDQPNVTPDSSTTVNSKADVDNLLIMFQEMFMDLFKWKEKMEQQLLDVSNTVYGMLAMK*