AlfalfaGEDB | Msa1408760

M. sativa cultivar zhongmu-4 / Msa1408760

KEGG: K09008
GO: -
PFAM: PF04430.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408760	XP_013443964.1	94.413	179	8	2	1	179	1	177	9.16e-118	341

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408760	sp\|Q6DFN1\|NDUF3_XENTR	35.780	109	70	0	66	174	66	174	8.80e-21	87.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408760	B7FHB1	94.413	179	8	2	1	179	1	177	4.38e-118	341

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1408760	0.845461	4.003663e-59	-8.615850e-47
Msa0022750	Msa1408760	0.820896	5.381964e-53	-8.615850e-47
Msa0032320	Msa1408760	-0.801853	7.399850e-49	-8.615850e-47
Msa0032370	Msa1408760	-0.805911	1.061821e-49	-8.615850e-47
Msa0032840	Msa1408760	0.802829	4.658119e-49	-8.615850e-47
Msa0048000	Msa1408760	-0.833200	6.113293e-56	-8.615850e-47
Msa0050730	Msa1408760	-0.815889	7.336743e-52	-8.615850e-47
Msa0050760	Msa1408760	-0.829630	4.623902e-55	-8.615850e-47
Msa0104610	Msa1408760	-0.801491	8.782858e-49	-8.615850e-47
Msa0114540	Msa1408760	0.841436	4.758580e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408760	MtrunA17_Chr8g0337221	94.413	179	8	2	1	179	1	177	8.42e-122	341

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408760	AT2G44525.1	72.626	179	40	2	1	179	1	170	4.11e-92	266
Msa1408760	AT3G60150.1	71.508	179	42	2	1	179	1	170	1.84e-89	259
Msa1408760	AT3G60150.4	65.789	152	43	2	1	152	1	143	2.03e-68	205
Msa1408760	AT3G60150.2	67.619	105	25	2	1	105	1	96	9.84e-44	142
Msa1408760	AT3G60150.3	67.619	105	25	2	1	105	1	96	9.84e-44	142

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Find 70 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAACCTGGAATAGGG+CGG	0.690412	tig0023416:+16686	None:intergenic
AAATGAAGAAGGTCGCATTG+TGG	0.696515	tig0023416:-15027	Msa1408760:CDS
AACAAGAAGTTCGTGGGTTT+GGG	0.250066	tig0023416:-18786	Msa1408760:five_prime_UTR
AACTCCATATGGAAGAAGTG+CGG	0.679978	tig0023416:+15001	None:intergenic
AATACTCTCTTCCAAATTAA+TGG	0.249280	tig0023416:+14481	None:intergenic
ACAACACAACAAGAAGTTCG+TGG	0.601920	tig0023416:-18793	Msa1408760:five_prime_UTR
ACAAGAAGTTCGTGGGTTTG+GGG	0.622996	tig0023416:-18785	Msa1408760:five_prime_UTR
ACGGAGAGAGGGCAAGGAAT+TGG	0.326466	tig0023416:+18627	None:intergenic
ACTTCTTGTTGTGTTGTTTC+TGG	0.118738	tig0023416:+18799	None:intergenic
AGACGGTTTATTCGGTCTAC+TGG	0.478171	tig0023416:-16124	Msa1408760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTCAGAGAAACAAAAAGA+TGG	-	tig0023416:14541-14560	Msa1408760:three_prime_UTR	30.0%
GCCAATAATTGTATTGTTGA+AGG	-	tig0023416:14961-14980	Msa1408760:three_prime_UTR	30.0%
CCCTTCAACAATACAATTAT+TGG	+	tig0023416:14965-14984	None:intergenic	30.0%
AACATGATTGTTTCGATATG+GGG	-	tig0023416:14989-15008	Msa1408760:exon	30.0%
GATACTGGATTTACTGTAAA+TGG	-	tig0023416:15155-15174	Msa1408760:intron	30.0%
GTAAATGGAGTTGAATATGA+AGG	-	tig0023416:15170-15189	Msa1408760:intron	30.0%
TTGGAAATTTGATCATGTCT+TGG	-	tig0023416:15207-15226	Msa1408760:intron	30.0%
TTCCACTTTAAACTTCTTAG+CGG	+	tig0023416:15642-15661	None:intergenic	30.0%
TACCTCTTAATCTCTCTTAA+TGG	-	tig0023416:15949-15968	Msa1408760:intron	30.0%
TACCATTAAGAGAGATTAAG+AGG	+	tig0023416:15954-15973	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023416	gene	14462	18853	14462	ID=Msa1408760;Name=Msa1408760
tig0023416	mRNA	14462	18853	14462	ID=Msa1408760-mRNA-1;Parent=Msa1408760;Name=Msa1408760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=98\|1\|1\|1\|0.75\|1\|5\|530\|179
tig0023416	exon	14462	15078	14462	ID=Msa1408760-mRNA-1:exon:25708;Parent=Msa1408760-mRNA-1
tig0023416	exon	16099	16199	16099	ID=Msa1408760-mRNA-1:exon:25707;Parent=Msa1408760-mRNA-1
tig0023416	exon	16695	16729	16695	ID=Msa1408760-mRNA-1:exon:25706;Parent=Msa1408760-mRNA-1
tig0023416	exon	18051	18167	18051	ID=Msa1408760-mRNA-1:exon:25705;Parent=Msa1408760-mRNA-1
tig0023416	exon	18556	18853	18556	ID=Msa1408760-mRNA-1:exon:25704;Parent=Msa1408760-mRNA-1
tig0023416	five_prime_UTR	18756	18853	18756	ID=Msa1408760-mRNA-1:five_prime_utr;Parent=Msa1408760-mRNA-1
tig0023416	CDS	18556	18755	18556	ID=Msa1408760-mRNA-1:cds;Parent=Msa1408760-mRNA-1
tig0023416	CDS	18051	18167	18051	ID=Msa1408760-mRNA-1:cds;Parent=Msa1408760-mRNA-1
tig0023416	CDS	16695	16729	16695	ID=Msa1408760-mRNA-1:cds;Parent=Msa1408760-mRNA-1
tig0023416	CDS	16099	16199	16099	ID=Msa1408760-mRNA-1:cds;Parent=Msa1408760-mRNA-1
tig0023416	CDS	14992	15078	14992	ID=Msa1408760-mRNA-1:cds;Parent=Msa1408760-mRNA-1
tig0023416	three_prime_UTR	14462	14991	14462	ID=Msa1408760-mRNA-1:three_prime_utr;Parent=Msa1408760-mRNA-1

Gene Sequence

>Msa1408760

ATGGCTGTTCGTCAAAGAGCAGTAACAGCACTTCCAAACCTCATACGCAATCTCCGCAACGAACAACCTCTCAAGCTCAACAAACCTTCTCCACATAACAATCATCCCAATTCCTTGCCCTCTCTCCGTCGCGCTTTCTCTTTATACGATCAGATCAATCTCATTGACAATGTCCCCGAAGACCAACTCCGTTTTCAAGGGTTTAAAGATACTGGATTTACTGTAAATGGAGTTGAATATGAAGGAAGTTTGCTTTGTGTTGGAAATTTGATCATGTCTTGGAAACCAAACAAGTTTTCAGAGATCACTGCTGATAGCTTGTCACTCTTTCAAATTGTCCGCCCTATTCCAGAGATTCTGATTATTGGCTGTGGAAGGAGCATTCAACATGTTGATCCTGAACTTAGACGGTTTATTCGGTCTACTGGCATGAAGTTAGAAGCTGTTGACTCGAGAAATGCAGCATCAACTTACAACATACTAAATGAAGAAGGTCGCATTGTGGCTGCCGCACTTCTTCCATATGGAGTTACTTCATGA

Protein sequence

>Msa1408760

MAVRQRAVTALPNLIRNLRNEQPLKLNKPSPHNNHPNSLPSLRRAFSLYDQINLIDNVPEDQLRFQGFKDTGFTVNGVEYEGSLLCVGNLIMSWKPNKFSEITADSLSLFQIVRPIPEILIIGCGRSIQHVDPELRRFIRSTGMKLEAVDSRNAASTYNILNEEGRIVAAALLPYGVTS*