Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365070 | XP_003604024.1 | 93.103 | 261 | 10 | 2 | 1 | 253 | 1 | 261 | 2.52e-170 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365070 | sp|Q7XA67|MTN2_ARATH | 60.569 | 246 | 90 | 1 | 15 | 253 | 9 | 254 | 2.11e-115 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365070 | G7J8G7 | 93.103 | 261 | 10 | 2 | 1 | 253 | 1 | 261 | 1.20e-170 | 480 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365070 | Msa1367360 | 0.878015 | 3.950726e-69 | -8.615850e-47 |
| Msa1365070 | Msa1443100 | 0.891027 | 5.777489e-74 | -8.615850e-47 |
| Msa0524180 | Msa1365070 | 0.893876 | 4.178399e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365070 | MtrunA17_Chr3g0145451 | 93.103 | 261 | 10 | 2 | 1 | 253 | 1 | 261 | 2.32e-174 | 480 |
| Msa1365070 | MtrunA17_Chr4g0018461 | 84.946 | 93 | 14 | 0 | 161 | 253 | 1 | 93 | 8.01e-50 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365070 | AT4G34840.1 | 60.569 | 246 | 90 | 1 | 15 | 253 | 9 | 254 | 2.15e-116 | 333 |
| Msa1365070 | AT4G38800.1 | 59.231 | 260 | 99 | 1 | 1 | 253 | 8 | 267 | 1.18e-114 | 330 |
| Msa1365070 | AT4G34840.2 | 61.373 | 233 | 83 | 1 | 28 | 253 | 1 | 233 | 6.45e-111 | 319 |
| Msa1365070 | AT4G34840.4 | 63.547 | 203 | 67 | 1 | 58 | 253 | 2 | 204 | 3.16e-96 | 281 |
| Msa1365070 | AT4G34840.5 | 58.564 | 181 | 68 | 1 | 15 | 188 | 9 | 189 | 7.81e-81 | 241 |
| Msa1365070 | AT4G34840.3 | 58.564 | 181 | 68 | 1 | 15 | 188 | 9 | 189 | 7.81e-81 | 241 |
Find 60 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAATTCCTACAAAATT+TGG | 0.166272 | tig0018197:-123221 | Msa1365070:CDS |
| CCTGGTAAAGATCCTTCTTT+TGG | 0.203643 | tig0018197:-126761 | Msa1365070:CDS |
| GTCTCAATTTGAACTTGATT+TGG | 0.264829 | tig0018197:-126784 | Msa1365070:CDS |
| ACATGAAACAATATTCGATT+TGG | 0.276638 | tig0018197:-127249 | Msa1365070:five_prime_UTR |
| CTGCTGGTGGCTTCAAGGCC+AGG | 0.284627 | tig0018197:-126649 | Msa1365070:CDS |
| CGTACCCAAGGAACACCTTC+TGG | 0.300889 | tig0018197:+126827 | None:intergenic |
| AGAATTGGAAAGATGAAATT+AGG | 0.304732 | tig0018197:+123115 | None:intergenic |
| TGGCACTGCTGGTGGCTTCA+AGG | 0.343540 | tig0018197:-126654 | Msa1365070:CDS |
| ATGAATGACACATACAATAT+TGG | 0.356948 | tig0018197:+122967 | None:intergenic |
| ATCATTAATGCTGGCACTGC+TGG | 0.358624 | tig0018197:-126665 | Msa1365070:CDS |
| GTTGTACACTACCAATTGAT+TGG | 0.362358 | tig0018197:-123071 | Msa1365070:three_prime_UTR |
| CTCACATATTTCCAATCAAT+TGG | 0.370222 | tig0018197:+123060 | None:intergenic |
| TGTAACAAGAGCAGAGGATA+TGG | 0.391669 | tig0018197:+126721 | None:intergenic |
| TTAAGTTCCTTTACAAGGTT+GGG | 0.394633 | tig0018197:+124964 | None:intergenic |
| TGCTGGTGGCTTCAAGGCCA+GGG | 0.397697 | tig0018197:-126648 | Msa1365070:CDS |
| CATGAAACAATATTCGATTT+GGG | 0.398491 | tig0018197:-127248 | Msa1365070:five_prime_UTR |
| AGCTCAAATTTATTGACAAC+AGG | 0.399480 | tig0018197:+126960 | None:intergenic |
| TGTAACTTCTGCACTTGATC+TGG | 0.402973 | tig0018197:-123194 | Msa1365070:CDS |
| ACTTGATCTGGCTGTCGAAC+AGG | 0.406655 | tig0018197:-123182 | Msa1365070:CDS |
| CCAGCATTAATGATCAAATC+AGG | 0.413935 | tig0018197:+126674 | None:intergenic |
| GACTATGACGATGTTGGAAA+TGG | 0.417905 | tig0018197:+127089 | None:intergenic |
| TCCAACATCGTCATAGTCAT+TGG | 0.422187 | tig0018197:-127084 | Msa1365070:intron |
| TGATGCAACTGTCAAAGATA+TGG | 0.423834 | tig0018197:-123534 | Msa1365070:CDS |
| GTTCCTTGGGTACGTTATCA+TGG | 0.425081 | tig0018197:-126818 | Msa1365070:CDS |
| ATTAAGTTCCTTTACAAGGT+TGG | 0.433930 | tig0018197:+124963 | None:intergenic |
| GGATTTAGACTTACAGGAAT+GGG | 0.445539 | tig0018197:+126566 | None:intergenic |
| AAACAGAGTTGGACTGCAAA+TGG | 0.458970 | tig0018197:-127160 | Msa1365070:exon |
| TACAAGGTTGGGTGTTTCAA+AGG | 0.482086 | tig0018197:+124975 | None:intergenic |
| CTAACGGAGAGTTAGGATCT+TGG | 0.490412 | tig0018197:+126934 | None:intergenic |
| GAATGGCGATATAAATTAAG+AGG | 0.498221 | tig0018197:+122923 | None:intergenic |
| TGTAGGAATTCTTCAGCAGT+TGG | 0.499721 | tig0018197:+123229 | None:intergenic |
| AATTTGAACTTGATTTGGCC+TGG | 0.507460 | tig0018197:-126779 | Msa1365070:CDS |
| GTCACCAACAGTAGCTCCCC+TGG | 0.526826 | tig0018197:+126631 | None:intergenic |
| CCTGATTTGATCATTAATGC+TGG | 0.529062 | tig0018197:-126674 | Msa1365070:CDS |
| GAAAAGAAACGAAACAGAGT+TGG | 0.532121 | tig0018197:-127171 | Msa1365070:five_prime_UTR |
| ATTAATGCTGGCACTGCTGG+TGG | 0.533938 | tig0018197:-126662 | Msa1365070:CDS |
| CAGGTGGCTAAATTGTCTAC+TGG | 0.538602 | tig0018197:-123605 | Msa1365070:CDS |
| GCTGGTGGCTTCAAGGCCAG+GGG | 0.541743 | tig0018197:-126647 | Msa1365070:CDS |
| AGGATTTAGACTTACAGGAA+TGG | 0.544029 | tig0018197:+126565 | None:intergenic |
| CGTTATCATGGAAAATTCAA+AGG | 0.546606 | tig0018197:-126806 | Msa1365070:CDS |
| ACTATGACGATGTTGGAAAT+GGG | 0.546835 | tig0018197:+127090 | None:intergenic |
| AAATTGCAGGAACTTTAAGA+AGG | 0.556348 | tig0018197:+123290 | None:intergenic |
| CCAAAAGAAGGATCTTTACC+AGG | 0.561581 | tig0018197:+126761 | None:intergenic |
| ACCAATGACTATGACGATGT+TGG | 0.562519 | tig0018197:+127083 | None:intergenic |
| ACACTGTCAACCCCAAAAGA+AGG | 0.562843 | tig0018197:+126749 | None:intergenic |
| TTTGCAGGAGTAGACGTGAA+TGG | 0.572420 | tig0018197:+122906 | None:intergenic |
| CCACAAGAGAGTGGTATGGT+TGG | 0.578175 | tig0018197:+122990 | None:intergenic |
| TCCAATATCAGCTATGCAGA+CGG | 0.581725 | tig0018197:-126991 | Msa1365070:intron |
| CTCTTTAGATATGACACCGC+AGG | 0.586462 | tig0018197:-123579 | Msa1365070:CDS |
| GCTGTGACTGATATTATTGA+CGG | 0.587769 | tig0018197:-123259 | Msa1365070:CDS |
| AAGGCCAGGGGAGCTACTGT+TGG | 0.594473 | tig0018197:-126635 | Msa1365070:CDS |
| AGCATATGTAACAAGAGCAG+AGG | 0.596717 | tig0018197:+126715 | None:intergenic |
| TTTCCATGATAACGTACCCA+AGG | 0.610898 | tig0018197:+126815 | None:intergenic |
| TTGGCCACAAGAGAGTGGTA+TGG | 0.634094 | tig0018197:+122986 | None:intergenic |
| GCAGGATGAATCATCAATCA+CGG | 0.637150 | tig0018197:-123561 | Msa1365070:CDS |
| CAATATTGGCCACAAGAGAG+TGG | 0.638924 | tig0018197:+122981 | None:intergenic |
| TGCAACTGTCAAAGATATGG+AGG | 0.640472 | tig0018197:-123531 | Msa1365070:intron |
| CCAACCATACCACTCTCTTG+TGG | 0.644862 | tig0018197:-122990 | Msa1365070:three_prime_UTR |
| GTGATTGATGATTCATCCTG+CGG | 0.661402 | tig0018197:+123563 | None:intergenic |
| AATATCAGCTATGCAGACGG+AGG | 0.702961 | tig0018197:-126988 | Msa1365070:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATTAATAATTATAT+TGG | + | tig0018197:123961-123980 | None:intergenic | 0.0% |
| !! | ATTATTAATTAATAATTATT+TGG | - | tig0018197:123966-123985 | Msa1365070:intron | 0.0% |
| !! | TAATAATTATTTGGTATAAT+AGG | - | tig0018197:123975-123994 | Msa1365070:intron | 10.0% |
| !!! | TTTAATAATTATTTCTTACA+AGG | + | tig0018197:124293-124312 | None:intergenic | 10.0% |
| !! | TTTAATACATATACAAATAA+AGG | - | tig0018197:124591-124610 | Msa1365070:intron | 10.0% |
| !! | TAATAAAGTAAAAAGACTAA+CGG | + | tig0018197:123256-123275 | None:intergenic | 15.0% |
| !!! | TCTTTTTACTTTATTAGATT+AGG | - | tig0018197:123260-123279 | Msa1365070:CDS | 15.0% |
| !!! | CTTTTTACTTTATTAGATTA+GGG | - | tig0018197:123261-123280 | Msa1365070:CDS | 15.0% |
| !! | AGTATTTAAATTAATGAATC+TGG | - | tig0018197:123910-123929 | Msa1365070:intron | 15.0% |
| !! | GTATTTAAATTAATGAATCT+GGG | - | tig0018197:123911-123930 | Msa1365070:intron | 15.0% |
| !! | TAAGTTAGTAGTATTAATTA+GGG | + | tig0018197:124549-124568 | None:intergenic | 15.0% |
| !! | ATAAGTTAGTAGTATTAATT+AGG | + | tig0018197:124550-124569 | None:intergenic | 15.0% |
| !! | TATAAAGAAAACTCTATTAT+AGG | - | tig0018197:125532-125551 | Msa1365070:intron | 15.0% |
| !!! | TGATTTTATCAAATTATTAC+CGG | - | tig0018197:126363-126382 | Msa1365070:intron | 15.0% |
| !! | TGAATAAAGTAATTAAGAAA+AGG | + | tig0018197:126509-126528 | None:intergenic | 15.0% |
| !!! | TTTATTAGATTAGGGTTTTT+AGG | - | tig0018197:123269-123288 | Msa1365070:CDS | 20.0% |
| !!! | TTATTAGATTAGGGTTTTTA+GGG | - | tig0018197:123270-123289 | Msa1365070:CDS | 20.0% |
| !! | CAATTGAATTGAATTGAATT+AGG | + | tig0018197:123313-123332 | None:intergenic | 20.0% |
| !! | ATCCTACAAAATTCATATAT+AGG | - | tig0018197:123704-123723 | Msa1365070:intron | 20.0% |
| !!! | AACCTATATATGAATTTTGT+AGG | + | tig0018197:123709-123728 | None:intergenic | 20.0% |
| !!! | TTATTACATTTTTACGAAAC+CGG | - | tig0018197:124064-124083 | Msa1365070:intron | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | tig0018197:124548-124567 | None:intergenic | 20.0% |
| !!! | GTATTTCTAAACATTACATT+AGG | + | tig0018197:124973-124992 | None:intergenic | 20.0% |
| !!! | GAGCAAGAAATAATATATTT+TGG | + | tig0018197:125287-125306 | None:intergenic | 20.0% |
| !!! | ACTCTATTTTATTAACATGT+AGG | - | tig0018197:126028-126047 | Msa1365070:intron | 20.0% |
| !! | TTAACATGTAGGAAAATTTA+TGG | - | tig0018197:126039-126058 | Msa1365070:intron | 20.0% |
| !! | CAAAATAATAAGTAATCTCA+AGG | + | tig0018197:126120-126139 | None:intergenic | 20.0% |
| !!! | TTTGATTTGTGTTCTTTTTA+AGG | - | tig0018197:126171-126190 | Msa1365070:intron | 20.0% |
| !!! | AAACAAATCAAGATGTATTT+TGG | - | tig0018197:126463-126482 | Msa1365070:intron | 20.0% |
| !! | AAAGTAATTAAGAAAAGGAT+TGG | + | tig0018197:126504-126523 | None:intergenic | 20.0% |
| !!! | ATCTTTCCAATTCTTTTTAT+AGG | - | tig0018197:127065-127084 | Msa1365070:intron | 20.0% |
| ! | ACATGAAACAATATTCGATT+TGG | - | tig0018197:122922-122941 | Msa1365070:three_prime_UTR | 25.0% |
| ! | CATGAAACAATATTCGATTT+GGG | - | tig0018197:122923-122942 | Msa1365070:three_prime_UTR | 25.0% |
| ! | TATACTTTATCCTTCAGATT+GGG | - | tig0018197:123652-123671 | Msa1365070:intron | 25.0% |
| !!! | ACAGCAAAAAAAGTGTTTTT+TGG | - | tig0018197:124021-124040 | Msa1365070:intron | 25.0% |
| !! | TATTACATTTTTACGAAACC+GGG | - | tig0018197:124065-124084 | Msa1365070:intron | 25.0% |
| ! | TAAGAAAAGTAAGACTAAAG+TGG | - | tig0018197:124385-124404 | Msa1365070:intron | 25.0% |
| ! | GGACAAAAATAAAGTCAAAT+GGG | + | tig0018197:124466-124485 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | tig0018197:124501-124520 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | tig0018197:124502-124521 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | tig0018197:124538-124557 | None:intergenic | 25.0% |
| ! | TATACAAATAAAGGACAATG+TGG | - | tig0018197:124600-124619 | Msa1365070:intron | 25.0% |
| ! | AAGAAATGTGAAAAAAGCAA+AGG | - | tig0018197:124673-124692 | Msa1365070:intron | 25.0% |
| ! | AGAAATGTGAAAAAAGCAAA+GGG | - | tig0018197:124674-124693 | Msa1365070:intron | 25.0% |
| ! | AAAAGGAAACAAAAAGAAGA+TGG | + | tig0018197:124766-124785 | None:intergenic | 25.0% |
| ! | AATACAGATGCAAGTTTAAA+AGG | + | tig0018197:124783-124802 | None:intergenic | 25.0% |
| ! | TTAAACTTGCATCTGTATTA+TGG | - | tig0018197:124784-124803 | Msa1365070:intron | 25.0% |
| ! | TGTAATGTTTAGAAATACGA+AGG | - | tig0018197:124975-124994 | Msa1365070:intron | 25.0% |
| !!! | ATTTCTTTTGTTTTCTGGTT+GGG | - | tig0018197:125041-125060 | Msa1365070:intron | 25.0% |
| !! | ATATAATTGTTGTCTTTTGC+AGG | - | tig0018197:125140-125159 | Msa1365070:intron | 25.0% |
| ! | TTAGATTAAGTTCCTTTACA+AGG | + | tig0018197:125215-125234 | None:intergenic | 25.0% |
| ! | TGTAAAGGAACTTAATCTAA+AGG | - | tig0018197:125215-125234 | Msa1365070:intron | 25.0% |
| ! | CAAGACAATCATAAACAATA+GGG | + | tig0018197:125711-125730 | None:intergenic | 25.0% |
| ! | TTATATATGCATAGTGAACT+AGG | - | tig0018197:125785-125804 | Msa1365070:intron | 25.0% |
| ! | TATATATGCATAGTGAACTA+GGG | - | tig0018197:125786-125805 | Msa1365070:intron | 25.0% |
| ! | AACAAATTCAGCTATTAGAA+TGG | - | tig0018197:125889-125908 | Msa1365070:intron | 25.0% |
| !!! | TTGCTAACTTTTTTTTGAAG+AGG | + | tig0018197:125965-125984 | None:intergenic | 25.0% |
| ! | TCATTCTGAATTGAAACATA+TGG | - | tig0018197:126438-126457 | Msa1365070:intron | 25.0% |
| !! | GAACATTTGGTTGATTTATT+GGG | - | tig0018197:126702-126721 | Msa1365070:CDS | 25.0% |
| !! | AACATTTGGTTGATTTATTG+GGG | - | tig0018197:126703-126722 | Msa1365070:CDS | 25.0% |
| ! | TTAGAAGGTGATTTATTTGA+TGG | + | tig0018197:126770-126789 | None:intergenic | 25.0% |
| ! | TTAGGTCTCTATAATTTAGA+AGG | + | tig0018197:126785-126804 | None:intergenic | 25.0% |
| ! | TGAAGAATTCCTACAAAATT+TGG | - | tig0018197:126950-126969 | Msa1365070:CDS | 25.0% |
| !! | AGGTCATTAATTTTATCGAT+GGG | - | tig0018197:127009-127028 | Msa1365070:intron | 25.0% |
| ! | AGAATTGGAAAGATGAAATT+AGG | + | tig0018197:127059-127078 | None:intergenic | 25.0% |
| ! | ATGAATGACACATACAATAT+TGG | + | tig0018197:127207-127226 | None:intergenic | 25.0% |
| !! | TCGATTTGGGTACTAAAAAA+AGG | - | tig0018197:122936-122955 | Msa1365070:three_prime_UTR | 30.0% |
| TGGGTACTAAAAAAAGGAAA+AGG | - | tig0018197:122942-122961 | Msa1365070:three_prime_UTR | 30.0% | |
| AGCTCAAATTTATTGACAAC+AGG | + | tig0018197:123214-123233 | None:intergenic | 30.0% | |
| CGTTATCATGGAAAATTCAA+AGG | - | tig0018197:123365-123384 | Msa1365070:intron | 30.0% | |
| GTCTCAATTTGAACTTGATT+TGG | - | tig0018197:123387-123406 | Msa1365070:intron | 30.0% | |
| GATAAAGGATTTAGACTTAC+AGG | + | tig0018197:123614-123633 | None:intergenic | 30.0% | |
| GTAAGTCTAAATCCTTTATC+TGG | - | tig0018197:123614-123633 | Msa1365070:intron | 30.0% | |
| TAGAAAGCAAAACCAGATAA+AGG | + | tig0018197:123629-123648 | None:intergenic | 30.0% | |
| CTATACTTTATCCTTCAGAT+TGG | - | tig0018197:123651-123670 | Msa1365070:intron | 30.0% | |
| !! | GTTGTTTTCTATGCATATGT+AGG | + | tig0018197:123732-123751 | None:intergenic | 30.0% |
| TCTTAAAATTCTGGGTTTGT+GGG | + | tig0018197:124103-124122 | None:intergenic | 30.0% | |
| TTCTTAAAATTCTGGGTTTG+TGG | + | tig0018197:124104-124123 | None:intergenic | 30.0% | |
| GATGGTCTTCTTAAAATTCT+GGG | + | tig0018197:124111-124130 | None:intergenic | 30.0% | |
| !! | CAGAATTTTAAGAAGACCAT+CGG | - | tig0018197:124110-124129 | Msa1365070:intron | 30.0% |
| AAAGTAACGCATGACATAAA+AGG | + | tig0018197:124415-124434 | None:intergenic | 30.0% | |
| CAAAAATAAAGTCAAATGGG+TGG | + | tig0018197:124463-124482 | None:intergenic | 30.0% | |
| GGGACAAAAATAAAGTCAAA+TGG | + | tig0018197:124467-124486 | None:intergenic | 30.0% | |
| TGAAAAGGGGTTTAGATTTA+GGG | + | tig0018197:124487-124506 | None:intergenic | 30.0% | |
| TTGAAAAGGGGTTTAGATTT+AGG | + | tig0018197:124488-124507 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | tig0018197:124500-124519 | None:intergenic | 30.0% | |
| !!! | ATAGCTCTAACTGTTTTTAC+TGG | - | tig0018197:124867-124886 | Msa1365070:intron | 30.0% |
| ATGTTTAGAAATACGAAGGT+TGG | - | tig0018197:124979-124998 | Msa1365070:CDS | 30.0% | |
| TAGGCACTAAGAAACATTTA+GGG | + | tig0018197:125006-125025 | None:intergenic | 30.0% | |
| ATAGGCACTAAGAAACATTT+AGG | + | tig0018197:125007-125026 | None:intergenic | 30.0% | |
| AAAAGAAATGTAGCTGTGAT+AGG | + | tig0018197:125030-125049 | None:intergenic | 30.0% | |
| !!! | GCTACATTTCTTTTGTTTTC+TGG | - | tig0018197:125036-125055 | Msa1365070:intron | 30.0% |
| !!! | CATTTCTTTTGTTTTCTGGT+TGG | - | tig0018197:125040-125059 | Msa1365070:intron | 30.0% |
| !!! | TTTCTTTTGTTTTCTGGTTG+GGG | - | tig0018197:125042-125061 | Msa1365070:intron | 30.0% |
| TTAAGTTCCTTTACAAGGTT+GGG | + | tig0018197:125210-125229 | None:intergenic | 30.0% | |
| ATTAAGTTCCTTTACAAGGT+TGG | + | tig0018197:125211-125230 | None:intergenic | 30.0% | |
| TGTCTACAATAAACCTACAA+TGG | + | tig0018197:125418-125437 | None:intergenic | 30.0% | |
| CTTACATTTGCATTTGTGAA+AGG | - | tig0018197:125440-125459 | Msa1365070:intron | 30.0% | |
| ATATATGTGTGTTCATGTGA+AGG | + | tig0018197:125515-125534 | None:intergenic | 30.0% | |
| ! | ACATGTTTTGTCATCCAAAT+TGG | - | tig0018197:125600-125619 | Msa1365070:intron | 30.0% |
| GTAAACAATGGTATCCAATT+TGG | + | tig0018197:125617-125636 | None:intergenic | 30.0% | |
| GATATAATTCACGTTCTCAA+AGG | + | tig0018197:125689-125708 | None:intergenic | 30.0% | |
| CCAAGACAATCATAAACAAT+AGG | + | tig0018197:125712-125731 | None:intergenic | 30.0% | |
| CCTATTGTTTATGATTGTCT+TGG | - | tig0018197:125709-125728 | Msa1365070:intron | 30.0% | |
| ATATATGCATAGTGAACTAG+GGG | - | tig0018197:125787-125806 | Msa1365070:intron | 30.0% | |
| GAAGCAAGCATATAATAATG+TGG | - | tig0018197:125819-125838 | Msa1365070:intron | 30.0% | |
| ! | TTGCTAACTTATAGTGGAAT+GGG | + | tig0018197:125935-125954 | None:intergenic | 30.0% |
| ! | ATTGCTAACTTATAGTGGAA+TGG | + | tig0018197:125936-125955 | None:intergenic | 30.0% |
| TATGCATTGCTAACTTATAG+TGG | + | tig0018197:125941-125960 | None:intergenic | 30.0% | |
| CGATGTATATCATAAATGAG+TGG | - | tig0018197:125995-126014 | Msa1365070:intron | 30.0% | |
| !!! | TTTTGGCTGTTATTTTTGAC+AGG | - | tig0018197:126074-126093 | Msa1365070:intron | 30.0% |
| TAATAAGTAATCTCAAGGAG+AGG | + | tig0018197:126115-126134 | None:intergenic | 30.0% | |
| TTGAAAGTAACTACATATGC+CGG | + | tig0018197:126337-126356 | None:intergenic | 30.0% | |
| TATCAAATTATTACCGGTGT+CGG | - | tig0018197:126369-126388 | Msa1365070:intron | 30.0% | |
| AATGAAACATTGACACAAAC+GGG | + | tig0018197:126423-126442 | None:intergenic | 30.0% | |
| GAATGAAACATTGACACAAA+CGG | + | tig0018197:126424-126443 | None:intergenic | 30.0% | |
| ! | GGAACATTTGGTTGATTTAT+TGG | - | tig0018197:126701-126720 | Msa1365070:CDS | 30.0% |
| TCCTTTGTTAAATATTCCAC+AGG | - | tig0018197:126833-126852 | Msa1365070:CDS | 30.0% | |
| CCTTTGTTAAATATTCCACA+GGG | - | tig0018197:126834-126853 | Msa1365070:CDS | 30.0% | |
| ! | AAATTGCAGGAACTTTAAGA+AGG | + | tig0018197:126884-126903 | None:intergenic | 30.0% |
| ! | ACAGCTTTTACAAAAATTGC+AGG | + | tig0018197:126897-126916 | None:intergenic | 30.0% |
| ! | CAGGTCATTAATTTTATCGA+TGG | - | tig0018197:127008-127027 | Msa1365070:intron | 30.0% |
| GTGTTGCCTATAAAAAGAAT+TGG | + | tig0018197:127074-127093 | None:intergenic | 30.0% | |
| CTCACATATTTCCAATCAAT+TGG | + | tig0018197:127114-127133 | None:intergenic | 30.0% | |
| GAATGGCGATATAAATTAAG+AGG | + | tig0018197:127251-127270 | None:intergenic | 30.0% | |
| GAAAAGAAACGAAACAGAGT+TGG | - | tig0018197:123000-123019 | Msa1365070:three_prime_UTR | 35.0% | |
| !! | GTTGGAAATGGGTTTTTCAT+CGG | + | tig0018197:123073-123092 | None:intergenic | 35.0% |
| ACTATGACGATGTTGGAAAT+GGG | + | tig0018197:123084-123103 | None:intergenic | 35.0% | |
| AAAAAGACTAACGGAGAGTT+AGG | + | tig0018197:123247-123266 | None:intergenic | 35.0% | |
| !! | ATTGATTCCAGTTTTCCAGA+AGG | - | tig0018197:123329-123348 | Msa1365070:intron | 35.0% |
| !! | AATTTGAACTTGATTTGGCC+TGG | - | tig0018197:123392-123411 | Msa1365070:intron | 35.0% |
| ! | CTGGTAAAGATCCTTCTTTT+GGG | - | tig0018197:123411-123430 | Msa1365070:intron | 35.0% |
| ! | TGGTAAAGATCCTTCTTTTG+GGG | - | tig0018197:123412-123431 | Msa1365070:intron | 35.0% |
| CCAGCATTAATGATCAAATC+AGG | + | tig0018197:123500-123519 | None:intergenic | 35.0% | |
| ! | CCTGATTTGATCATTAATGC+TGG | - | tig0018197:123497-123516 | Msa1365070:intron | 35.0% |
| GGATTTAGACTTACAGGAAT+GGG | + | tig0018197:123608-123627 | None:intergenic | 35.0% | |
| AGGATTTAGACTTACAGGAA+TGG | + | tig0018197:123609-123628 | None:intergenic | 35.0% | |
| CGATGGTCTTCTTAAAATTC+TGG | + | tig0018197:124112-124131 | None:intergenic | 35.0% | |
| ATCCAGAATCAGAAATTGGT+GGG | + | tig0018197:124196-124215 | None:intergenic | 35.0% | |
| GTAGATCCAGAATCAGAAAT+TGG | + | tig0018197:124200-124219 | None:intergenic | 35.0% | |
| TAGTAGAAACACATGAGACT+AGG | + | tig0018197:124249-124268 | None:intergenic | 35.0% | |
| CAAATGGGTGGTTAGATATA+GGG | + | tig0018197:124451-124470 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTAGATAT+AGG | + | tig0018197:124452-124471 | None:intergenic | 35.0% | |
| AATGTGAAAAAAGCAAAGGG+AGG | - | tig0018197:124677-124696 | Msa1365070:intron | 35.0% | |
| !! | TATGTCAAGTTGCGTTTTGA+AGG | - | tig0018197:124731-124750 | Msa1365070:intron | 35.0% |
| ! | ATTAGGAGAGTCTGTAGTTT+TGG | + | tig0018197:124956-124975 | None:intergenic | 35.0% |
| AGGCACTAAGAAACATTTAG+GGG | + | tig0018197:125005-125024 | None:intergenic | 35.0% | |
| AAATGTAGCTGTGATAGGAT+AGG | + | tig0018197:125025-125044 | None:intergenic | 35.0% | |
| !!! | TTCTTTTGTTTTCTGGTTGG+GGG | - | tig0018197:125043-125062 | Msa1365070:intron | 35.0% |
| ! | TTGCAGGTTTTTGATCTGTA+TGG | - | tig0018197:125156-125175 | Msa1365070:intron | 35.0% |
| ! | GTTTTTGATCTGTATGGAGT+TGG | - | tig0018197:125162-125181 | Msa1365070:intron | 35.0% |
| ACATGTGATGTCAAGGAATT+TGG | + | tig0018197:125586-125605 | None:intergenic | 35.0% | |
| TGACAAAACATGTGATGTCA+AGG | + | tig0018197:125593-125612 | None:intergenic | 35.0% | |
| !! | TGATTGTCTTGGCTTTGATT+AGG | - | tig0018197:125720-125739 | Msa1365070:intron | 35.0% |
| ! | TAGCTGAATTTGTTCATGTC+AGG | + | tig0018197:125883-125902 | None:intergenic | 35.0% |
| CAGTTTAAACTATCCCAAGA+AGG | + | tig0018197:126207-126226 | None:intergenic | 35.0% | |
| TCTAACACACTGACACATAT+CGG | + | tig0018197:126301-126320 | None:intergenic | 35.0% | |
| TAATATATTGACACCGACAC+CGG | + | tig0018197:126385-126404 | None:intergenic | 35.0% | |
| ATACGTGCAAATATGGTTGA+AGG | + | tig0018197:126544-126563 | None:intergenic | 35.0% | |
| TGATGCAACTGTCAAAGATA+TGG | - | tig0018197:126637-126656 | Msa1365070:CDS | 35.0% | |
| CCCTGTGGAATATTTAACAA+AGG | + | tig0018197:126837-126856 | None:intergenic | 35.0% | |
| GCTGTGACTGATATTATTGA+CGG | - | tig0018197:126912-126931 | Msa1365070:intron | 35.0% | |
| ! | TTACAGCAGCCAAATTTTGT+AGG | + | tig0018197:126962-126981 | None:intergenic | 35.0% |
| GTTGTACACTACCAATTGAT+TGG | - | tig0018197:127100-127119 | Msa1365070:CDS | 35.0% | |
| AAACAGAGTTGGACTGCAAA+TGG | - | tig0018197:123011-123030 | Msa1365070:three_prime_UTR | 40.0% | |
| GACTATGACGATGTTGGAAA+TGG | + | tig0018197:123085-123104 | None:intergenic | 40.0% | |
| TCCAACATCGTCATAGTCAT+TGG | - | tig0018197:123087-123106 | Msa1365070:three_prime_UTR | 40.0% | |
| ACCAATGACTATGACGATGT+TGG | + | tig0018197:123091-123110 | None:intergenic | 40.0% | |
| TCTGCATAGCTGATATTGGA+GGG | + | tig0018197:123180-123199 | None:intergenic | 40.0% | |
| TCCAATATCAGCTATGCAGA+CGG | - | tig0018197:123180-123199 | Msa1365070:CDS | 40.0% | |
| !!! | TTTTCCAGAAGGTGTTCCTT+GGG | - | tig0018197:123340-123359 | Msa1365070:intron | 40.0% |
| ! | TTTCCATGATAACGTACCCA+AGG | + | tig0018197:123359-123378 | None:intergenic | 40.0% |
| CCAAAAGAAGGATCTTTACC+AGG | + | tig0018197:123413-123432 | None:intergenic | 40.0% | |
| ! | CCTGGTAAAGATCCTTCTTT+TGG | - | tig0018197:123410-123429 | Msa1365070:intron | 40.0% |
| TGTAACAAGAGCAGAGGATA+TGG | + | tig0018197:123453-123472 | None:intergenic | 40.0% | |
| AGCATATGTAACAAGAGCAG+AGG | + | tig0018197:123459-123478 | None:intergenic | 40.0% | |
| TTATCCTTCAGATTGGGAAG+TGG | - | tig0018197:123658-123677 | Msa1365070:intron | 40.0% | |
| TATCCTTCAGATTGGGAAGT+GGG | - | tig0018197:123659-123678 | Msa1365070:intron | 40.0% | |
| AGGATGTAACAATCCGTGTT+AGG | + | tig0018197:123689-123708 | None:intergenic | 40.0% | |
| AAATTCTGGGTTTGTGGGTT+GGG | + | tig0018197:124098-124117 | None:intergenic | 40.0% | |
| AAAATTCTGGGTTTGTGGGT+TGG | + | tig0018197:124099-124118 | None:intergenic | 40.0% | |
| GATCCAGAATCAGAAATTGG+TGG | + | tig0018197:124197-124216 | None:intergenic | 40.0% | |
| AGCAAAGGGAGGTTACATTA+AGG | - | tig0018197:124688-124707 | Msa1365070:intron | 40.0% | |
| GCAAAGGGAGGTTACATTAA+GGG | - | tig0018197:124689-124708 | Msa1365070:intron | 40.0% | |
| TACAAGGTTGGGTGTTTCAA+AGG | + | tig0018197:125199-125218 | None:intergenic | 40.0% | |
| TGAAACACCCAACCTTGTAA+AGG | - | tig0018197:125200-125219 | Msa1365070:intron | 40.0% | |
| AGGTTACATCACATGTTTGC+GGG | + | tig0018197:125472-125491 | None:intergenic | 40.0% | |
| GAGGTTACATCACATGTTTG+CGG | + | tig0018197:125473-125492 | None:intergenic | 40.0% | |
| GTAACCTCCAATTGTTACAC+AGG | - | tig0018197:125485-125504 | Msa1365070:intron | 40.0% | |
| TAAGCCTGTGTAACAATTGG+AGG | + | tig0018197:125492-125511 | None:intergenic | 40.0% | |
| AGGTAAGCCTGTGTAACAAT+TGG | + | tig0018197:125495-125514 | None:intergenic | 40.0% | |
| CAGTTCTTCTGGGTAAACAA+TGG | + | tig0018197:125629-125648 | None:intergenic | 40.0% | |
| CATTGTTTACCCAGAAGAAC+TGG | - | tig0018197:125627-125646 | Msa1365070:intron | 40.0% | |
| TCCTTCAATCCAGTTCTTCT+GGG | + | tig0018197:125639-125658 | None:intergenic | 40.0% | |
| !! | GAAAATTTATGGTGCCACCA+GGG | - | tig0018197:126050-126069 | Msa1365070:intron | 40.0% |
| !! | AAAATTTATGGTGCCACCAG+GGG | - | tig0018197:126051-126070 | Msa1365070:intron | 40.0% |
| AAAATAACAGCCAAAACCCC+TGG | + | tig0018197:126070-126089 | None:intergenic | 40.0% | |
| ! | AAACTATCCCAAGAAGGTAC+TGG | + | tig0018197:126201-126220 | None:intergenic | 40.0% |
| CCATATCCTGCACGTAAATT+GGG | + | tig0018197:126233-126252 | None:intergenic | 40.0% | |
| TCCATATCCTGCACGTAAAT+TGG | + | tig0018197:126234-126253 | None:intergenic | 40.0% | |
| GCACAGACGCATTAGATTAA+AGG | - | tig0018197:126265-126284 | Msa1365070:intron | 40.0% | |
| !! | CGCATTAGATTAAAGGTGTC+TGG | - | tig0018197:126272-126291 | Msa1365070:intron | 40.0% |
| ACCATATTTGCACGTATTCC+AGG | - | tig0018197:126547-126566 | Msa1365070:intron | 40.0% | |
| ACCTGGAATACGTGCAAATA+TGG | + | tig0018197:126551-126570 | None:intergenic | 40.0% | |
| ATATTTGCACGTATTCCAGG+TGG | - | tig0018197:126550-126569 | Msa1365070:intron | 40.0% | |
| ! | GTGATTGATGATTCATCCTG+CGG | + | tig0018197:126611-126630 | None:intergenic | 40.0% |
| GCAGGATGAATCATCAATCA+CGG | - | tig0018197:126610-126629 | Msa1365070:CDS | 40.0% | |
| TGCAACTGTCAAAGATATGG+AGG | - | tig0018197:126640-126659 | Msa1365070:CDS | 40.0% | |
| ! | ATATGGAGGTATGCAGTACA+TGG | - | tig0018197:126654-126673 | Msa1365070:CDS | 40.0% |
| !!! | GTTTTCTAGAGCTTCGAAGT+TGG | - | tig0018197:126680-126699 | Msa1365070:CDS | 40.0% |
| AGCTTCGAAGTTGGAACATT+TGG | - | tig0018197:126689-126708 | Msa1365070:CDS | 40.0% | |
| CGAACAACTGTCAGTTACTT+AGG | + | tig0018197:126803-126822 | None:intergenic | 40.0% | |
| TGTAGGAATTCTTCAGCAGT+TGG | + | tig0018197:126945-126964 | None:intergenic | 40.0% | |
| TGTAACTTCTGCACTTGATC+TGG | - | tig0018197:126977-126996 | Msa1365070:CDS | 40.0% | |
| !! | GGAAATGGGTTTTTCATCGG+CGG | + | tig0018197:123070-123089 | None:intergenic | 45.0% |
| GTCTGCATAGCTGATATTGG+AGG | + | tig0018197:123181-123200 | None:intergenic | 45.0% | |
| TCCGTCTGCATAGCTGATAT+TGG | + | tig0018197:123184-123203 | None:intergenic | 45.0% | |
| AATATCAGCTATGCAGACGG+AGG | - | tig0018197:123183-123202 | Msa1365070:CDS | 45.0% | |
| CTAACGGAGAGTTAGGATCT+TGG | + | tig0018197:123240-123259 | None:intergenic | 45.0% | |
| ! | AGGAACACCTTCTGGAAAAC+TGG | + | tig0018197:123339-123358 | None:intergenic | 45.0% |
| !!! | GTTTTCCAGAAGGTGTTCCT+TGG | - | tig0018197:123339-123358 | Msa1365070:intron | 45.0% |
| GTTCCTTGGGTACGTTATCA+TGG | - | tig0018197:123353-123372 | Msa1365070:intron | 45.0% | |
| ACACTGTCAACCCCAAAAGA+AGG | + | tig0018197:123425-123444 | None:intergenic | 45.0% | |
| !!! | TCTTTTGGGGTTGACAGTGT+TGG | - | tig0018197:123425-123444 | Msa1365070:intron | 45.0% |
| ATCATTAATGCTGGCACTGC+TGG | - | tig0018197:123506-123525 | Msa1365070:intron | 45.0% | |
| ATCCTTCAGATTGGGAAGTG+GGG | - | tig0018197:123660-123679 | Msa1365070:intron | 45.0% | |
| ACAGTCGAGGGTTGTTGTAT+CGG | - | tig0018197:123833-123852 | Msa1365070:intron | 45.0% | |
| TGTATCGGGTGAGAAGGAAA+AGG | - | tig0018197:123848-123867 | Msa1365070:intron | 45.0% | |
| ATCTGGGCGTATCACTTCAT+TGG | - | tig0018197:123927-123946 | Msa1365070:intron | 45.0% | |
| TCTGGGCGTATCACTTCATT+GGG | - | tig0018197:123928-123947 | Msa1365070:intron | 45.0% | |
| GCAGCGAAAACACATGAAAG+CGG | + | tig0018197:124160-124179 | None:intergenic | 45.0% | |
| ! | ATGTGTTTTCGCTGCGATAC+CGG | - | tig0018197:124165-124184 | Msa1365070:intron | 45.0% |
| CTCCCACCAATTTCTGATTC+TGG | - | tig0018197:124191-124210 | Msa1365070:intron | 45.0% | |
| TGGTTAGATATAGGGACGGA+GGG | + | tig0018197:124443-124462 | None:intergenic | 45.0% | |
| TGGGTGGTTAGATATAGGGA+CGG | + | tig0018197:124447-124466 | None:intergenic | 45.0% | |
| AGGGAGGTTACATTAAGGGA+CGG | - | tig0018197:124693-124712 | Msa1365070:intron | 45.0% | |
| AGGTTACATTAAGGGACGGA+GGG | - | tig0018197:124697-124716 | Msa1365070:intron | 45.0% | |
| !!! | TTTGTTTTCTGGTTGGGGGA+AGG | - | tig0018197:125047-125066 | Msa1365070:intron | 45.0% |
| CACACACACTACTCAAGCAA+TGG | + | tig0018197:125318-125337 | None:intergenic | 45.0% | |
| GTGTGTGTGTGTGTGTCTAA+CGG | - | tig0018197:125339-125358 | Msa1365070:intron | 45.0% | |
| ! | AGCTGGTAATGTATAGCTCC+TGG | - | tig0018197:125364-125383 | Msa1365070:intron | 45.0% |
| ! | GCTGGTAATGTATAGCTCCT+GGG | - | tig0018197:125365-125384 | Msa1365070:intron | 45.0% |
| GGAAGGGTTAGATCCATTGT+AGG | - | tig0018197:125402-125421 | Msa1365070:intron | 45.0% | |
| ACCCAGAAGAACTGGATTGA+AGG | - | tig0018197:125635-125654 | Msa1365070:intron | 45.0% | |
| GTCCTTCAATCCAGTTCTTC+TGG | + | tig0018197:125640-125659 | None:intergenic | 45.0% | |
| !! | GGAAAATTTATGGTGCCACC+AGG | - | tig0018197:126049-126068 | Msa1365070:intron | 45.0% |
| AAGGTAGACCAGTACCTTCT+TGG | - | tig0018197:126190-126209 | Msa1365070:intron | 45.0% | |
| AGGTAGACCAGTACCTTCTT+GGG | - | tig0018197:126191-126210 | Msa1365070:intron | 45.0% | |
| CTGAAACCCAATTTACGTGC+AGG | - | tig0018197:126224-126243 | Msa1365070:intron | 45.0% | |
| CCCAATTTACGTGCAGGATA+TGG | - | tig0018197:126230-126249 | Msa1365070:intron | 45.0% | |
| GTTAGACACCAACACAACAC+CGG | - | tig0018197:126315-126334 | Msa1365070:intron | 45.0% | |
| !! | TACATATGCCGGTGTTGTGT+TGG | + | tig0018197:126326-126345 | None:intergenic | 45.0% |
| CAGTAGACAATTTAGCCACC+TGG | + | tig0018197:126568-126587 | None:intergenic | 45.0% | |
| CAGGTGGCTAAATTGTCTAC+TGG | - | tig0018197:126566-126585 | Msa1365070:intron | 45.0% | |
| CTCTTTAGATATGACACCGC+AGG | - | tig0018197:126592-126611 | Msa1365070:CDS | 45.0% | |
| CAATATTGGCCACAAGAGAG+TGG | + | tig0018197:127193-127212 | None:intergenic | 45.0% | |
| ATTAATGCTGGCACTGCTGG+TGG | - | tig0018197:123509-123528 | Msa1365070:intron | 50.0% | |
| TCCTTCAGATTGGGAAGTGG+GGG | - | tig0018197:123661-123680 | Msa1365070:intron | 50.0% | |
| !! | ACTGTTTCTGGTGGCTGTTG+TGG | + | tig0018197:123818-123837 | None:intergenic | 50.0% |
| CAACAACCCTCGACTGTTTC+TGG | + | tig0018197:123830-123849 | None:intergenic | 50.0% | |
| CAGTCGAGGGTTGTTGTATC+GGG | - | tig0018197:123834-123853 | Msa1365070:intron | 50.0% | |
| GGTTGTTGTATCGGGTGAGA+AGG | - | tig0018197:123842-123861 | Msa1365070:intron | 50.0% | |
| GGCGTATCACTTCATTGGGA+AGG | - | tig0018197:123932-123951 | Msa1365070:intron | 50.0% | |
| AGAAGACCATCGGAATCGAC+AGG | - | tig0018197:124120-124139 | Msa1365070:intron | 50.0% | |
| !! | TGCATTCCTGTCGATTCCGA+TGG | + | tig0018197:124129-124148 | None:intergenic | 50.0% |
| GCGAAAACACATGAAAGCGG+TGG | + | tig0018197:124157-124176 | None:intergenic | 50.0% | |
| GATCTACTCAAGCACGCAGA+TGG | - | tig0018197:124213-124232 | Msa1365070:intron | 50.0% | |
| GTGGTTAGATATAGGGACGG+AGG | + | tig0018197:124444-124463 | None:intergenic | 50.0% | |
| GAGGTTACATTAAGGGACGG+AGG | - | tig0018197:124696-124715 | Msa1365070:intron | 50.0% | |
| !!! | GGAGAGTCTGTAGTTTTGGC+AGG | + | tig0018197:124952-124971 | None:intergenic | 50.0% |
| CGTGCATGCCAAAATCTGCT+CGG | - | tig0018197:125075-125094 | Msa1365070:intron | 50.0% | |
| !!! | TGCAAGCACCGAGCAGATTT+TGG | + | tig0018197:125086-125105 | None:intergenic | 50.0% |
| ! | TCGGTGCTTGCAATGTTGTG+CGG | - | tig0018197:125094-125113 | Msa1365070:intron | 50.0% |
| GTGTGTGTCTAACGGTAAGC+TGG | - | tig0018197:125347-125366 | Msa1365070:intron | 50.0% | |
| GTATAGCTCCTGGGATAGCA+TGG | - | tig0018197:125374-125393 | Msa1365070:intron | 50.0% | |
| TCCTGGGATAGCATGGTCTA+GGG | - | tig0018197:125381-125400 | Msa1365070:intron | 50.0% | |
| GGATAGCATGGTCTAGGGAA+GGG | - | tig0018197:125386-125405 | Msa1365070:intron | 50.0% | |
| ATAACAGCCAAAACCCCTGG+TGG | + | tig0018197:126067-126086 | None:intergenic | 50.0% | |
| ACTTGATCTGGCTGTCGAAC+AGG | - | tig0018197:126989-127008 | Msa1365070:intron | 50.0% | |
| CCACAAGAGAGTGGTATGGT+TGG | + | tig0018197:127184-127203 | None:intergenic | 50.0% | |
| CCAACCATACCACTCTCTTG+TGG | - | tig0018197:127181-127200 | Msa1365070:five_prime_UTR | 50.0% | |
| TTGGCCACAAGAGAGTGGTA+TGG | + | tig0018197:127188-127207 | None:intergenic | 50.0% | |
| CGTACCCAAGGAACACCTTC+TGG | + | tig0018197:123347-123366 | None:intergenic | 55.0% | |
| TCCCCCACTTCCCAATCTGA+AGG | + | tig0018197:123665-123684 | None:intergenic | 55.0% | |
| GGAAGTGGGGGATCCTAACA+CGG | - | tig0018197:123673-123692 | Msa1365070:intron | 55.0% | |
| !! | GTTTCTGGTGGCTGTTGTGG+AGG | + | tig0018197:123815-123834 | None:intergenic | 55.0% |
| ACAGCCACCAGAAACAGTCG+AGG | - | tig0018197:123820-123839 | Msa1365070:intron | 55.0% | |
| CAGCCACCAGAAACAGTCGA+GGG | - | tig0018197:123821-123840 | Msa1365070:intron | 55.0% | |
| !! | CAACCCTCGACTGTTTCTGG+TGG | + | tig0018197:123827-123846 | None:intergenic | 55.0% |
| !! | CAGAAATTGGTGGGAGCGTC+CGG | + | tig0018197:124187-124206 | None:intergenic | 55.0% |
| CTCCTGGGATAGCATGGTCT+AGG | - | tig0018197:125380-125399 | Msa1365070:intron | 55.0% | |
| TCCCTAGACCATGCTATCCC+AGG | + | tig0018197:125385-125404 | None:intergenic | 55.0% | |
| GGGATAGCATGGTCTAGGGA+AGG | - | tig0018197:125385-125404 | Msa1365070:intron | 55.0% | |
| !!! | TATGGTGCCACCAGGGGTTT+TGG | - | tig0018197:126057-126076 | Msa1365070:intron | 55.0% |
| TAAGCAACAGCTGCTCCCTG+TGG | + | tig0018197:126852-126871 | None:intergenic | 55.0% | |
| TGGCACTGCTGGTGGCTTCA+AGG | - | tig0018197:123517-123536 | Msa1365070:intron | 60.0% | |
| TGCTGGTGGCTTCAAGGCCA+GGG | - | tig0018197:123523-123542 | Msa1365070:intron | 60.0% | |
| AAGGCCAGGGGAGCTACTGT+TGG | - | tig0018197:123536-123555 | Msa1365070:CDS | 60.0% | |
| GTCACCAACAGTAGCTCCCC+TGG | + | tig0018197:123543-123562 | None:intergenic | 60.0% | |
| !! | TGTGGGTTGGGTTCGCAACC+CGG | + | tig0018197:124086-124105 | None:intergenic | 60.0% |
| CTGCTGGTGGCTTCAAGGCC+AGG | - | tig0018197:123522-123541 | Msa1365070:intron | 65.0% | |
| GCTGGTGGCTTCAAGGCCAG+GGG | - | tig0018197:123524-123543 | Msa1365070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018197 | gene | 122908 | 127285 | 122908 | ID=Msa1365070;Name=Msa1365070 |
| tig0018197 | mRNA | 122908 | 127285 | 122908 | ID=Msa1365070-mRNA-1;Parent=Msa1365070;Name=Msa1365070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=122|0.8|0.83|1|1|1|6|233|253 |
| tig0018197 | exon | 122908 | 123338 | 122908 | ID=Msa1365070-mRNA-1:exon:14396;Parent=Msa1365070-mRNA-1 |
| tig0018197 | exon | 123532 | 123624 | 123532 | ID=Msa1365070-mRNA-1:exon:14395;Parent=Msa1365070-mRNA-1 |
| tig0018197 | exon | 124978 | 125031 | 124978 | ID=Msa1365070-mRNA-1:exon:14394;Parent=Msa1365070-mRNA-1 |
| tig0018197 | exon | 126580 | 126853 | 126580 | ID=Msa1365070-mRNA-1:exon:14393;Parent=Msa1365070-mRNA-1 |
| tig0018197 | exon | 126939 | 127002 | 126939 | ID=Msa1365070-mRNA-1:exon:14392;Parent=Msa1365070-mRNA-1 |
| tig0018197 | exon | 127085 | 127285 | 127085 | ID=Msa1365070-mRNA-1:exon:14391;Parent=Msa1365070-mRNA-1 |
| tig0018197 | five_prime_UTR | 127164 | 127285 | 127164 | ID=Msa1365070-mRNA-1:five_prime_utr;Parent=Msa1365070-mRNA-1 |
| tig0018197 | CDS | 127085 | 127163 | 127085 | ID=Msa1365070-mRNA-1:cds;Parent=Msa1365070-mRNA-1 |
| tig0018197 | CDS | 126939 | 127002 | 126939 | ID=Msa1365070-mRNA-1:cds;Parent=Msa1365070-mRNA-1 |
| tig0018197 | CDS | 126580 | 126853 | 126580 | ID=Msa1365070-mRNA-1:cds;Parent=Msa1365070-mRNA-1 |
| tig0018197 | CDS | 124978 | 125031 | 124978 | ID=Msa1365070-mRNA-1:cds;Parent=Msa1365070-mRNA-1 |
| tig0018197 | CDS | 123532 | 123624 | 123532 | ID=Msa1365070-mRNA-1:cds;Parent=Msa1365070-mRNA-1 |
| tig0018197 | CDS | 123141 | 123338 | 123141 | ID=Msa1365070-mRNA-1:cds;Parent=Msa1365070-mRNA-1 |
| tig0018197 | three_prime_UTR | 122908 | 123140 | 122908 | ID=Msa1365070-mRNA-1:three_prime_utr;Parent=Msa1365070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
