Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028610 | XP_003590594.1 | 98.628 | 656 | 9 | 0 | 1 | 656 | 1 | 656 | 0.0 | 1336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028610 | sp|Q9SV13|SUT31_ARATH | 74.394 | 660 | 163 | 4 | 1 | 656 | 1 | 658 | 0.0 | 1018 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028610 | G7IDK9 | 98.628 | 656 | 9 | 0 | 1 | 656 | 1 | 656 | 0.0 | 1336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028610 | Msa0030710 | 0.800270 | 1.559101e-48 | -8.615850e-47 |
| Msa0028610 | Msa0035090 | 0.867840 | 1.016854e-65 | -8.615850e-47 |
| Msa0028610 | Msa0040190 | 0.802114 | 6.542732e-49 | -8.615850e-47 |
| Msa0028610 | Msa0074310 | 0.829711 | 4.416847e-55 | -8.615850e-47 |
| Msa0028610 | Msa0076280 | 0.990981 | 2.728449e-185 | -8.615850e-47 |
| Msa0028610 | Msa0083200 | 0.813208 | 2.875198e-51 | -8.615850e-47 |
| Msa0028610 | Msa0083570 | 0.812675 | 3.763222e-51 | -8.615850e-47 |
| Msa0028610 | Msa0092750 | 0.815519 | 8.867779e-52 | -8.615850e-47 |
| Msa0028610 | Msa0096230 | 0.824988 | 5.989257e-54 | -8.615850e-47 |
| Msa0028610 | Msa0099830 | 0.823033 | 1.722258e-53 | -8.615850e-47 |
| Msa0028610 | Msa0119000 | 0.806055 | 9.903907e-50 | -8.615850e-47 |
| Msa0028610 | Msa0124310 | 0.981016 | 1.417287e-151 | -8.615850e-47 |
| Msa0028610 | Msa0130120 | 0.855622 | 5.576723e-62 | -8.615850e-47 |
| Msa0028610 | Msa0134550 | 0.801172 | 1.020809e-48 | -8.615850e-47 |
| Msa0028610 | Msa0143360 | 0.805506 | 1.291851e-49 | -8.615850e-47 |
| Msa0028610 | Msa0168680 | 0.955561 | 2.282110e-113 | -8.615850e-47 |
| Msa0028610 | Msa0175900 | 0.861050 | 1.346863e-63 | -8.615850e-47 |
| Msa0028610 | Msa0180980 | 0.808082 | 3.688799e-50 | -8.615850e-47 |
| Msa0028610 | Msa0187720 | 0.830384 | 3.027381e-55 | -8.615850e-47 |
| Msa0028610 | Msa0189050 | 0.804887 | 1.740569e-49 | -8.615850e-47 |
| Msa0028610 | Msa0207530 | 0.839110 | 1.927323e-57 | -8.615850e-47 |
| Msa0028610 | Msa0207900 | 0.826502 | 2.619575e-54 | -8.615850e-47 |
| Msa0028610 | Msa0207990 | 0.806814 | 6.850317e-50 | -8.615850e-47 |
| Msa0028610 | Msa0216010 | 0.806593 | 7.630268e-50 | -8.615850e-47 |
| Msa0028610 | Msa0231310 | 0.805804 | 1.118289e-49 | -8.615850e-47 |
| Msa0028610 | Msa0268180 | 0.813585 | 2.376503e-51 | -8.615850e-47 |
| Msa0028610 | Msa0268420 | 0.807431 | 5.072902e-50 | -8.615850e-47 |
| Msa0028610 | Msa0268540 | 0.819712 | 1.005560e-52 | -8.615850e-47 |
| Msa0028610 | Msa0269060 | 0.807524 | 4.846538e-50 | -8.615850e-47 |
| Msa0028610 | Msa0285710 | 0.800876 | 1.173431e-48 | -8.615850e-47 |
| Msa0028610 | Msa0301800 | 0.831091 | 2.031393e-55 | -8.615850e-47 |
| Msa0028610 | Msa0307490 | 0.857148 | 1.988870e-62 | -8.615850e-47 |
| Msa0028610 | Msa0309160 | 0.800928 | 1.145086e-48 | -8.615850e-47 |
| Msa0028610 | Msa0370510 | 0.817234 | 3.664929e-52 | -8.615850e-47 |
| Msa0028610 | Msa0377460 | 0.801996 | 6.918034e-49 | -8.615850e-47 |
| Msa0028610 | Msa0390950 | 0.805874 | 1.081099e-49 | -8.615850e-47 |
| Msa0028610 | Msa0392410 | 0.822280 | 2.577725e-53 | -8.615850e-47 |
| Msa0028610 | Msa0392450 | 0.813066 | 3.089072e-51 | -8.615850e-47 |
| Msa0028610 | Msa0392480 | 0.818677 | 1.729917e-52 | -8.615850e-47 |
| Msa0028610 | Msa0420080 | 0.823065 | 1.693103e-53 | -8.615850e-47 |
| Msa0028610 | Msa0433350 | 0.829016 | 6.515286e-55 | -8.615850e-47 |
| Msa0028610 | Msa0434630 | 0.815131 | 1.081932e-51 | -8.615850e-47 |
| Msa0028610 | Msa0466090 | 0.806254 | 8.994191e-50 | -8.615850e-47 |
| Msa0028610 | Msa0477070 | 0.826965 | 2.031095e-54 | -8.615850e-47 |
| Msa0028610 | Msa0487560 | 0.818784 | 1.635630e-52 | -8.615850e-47 |
| Msa0028610 | Msa0487620 | 0.811154 | 8.067881e-51 | -8.615850e-47 |
| Msa0028610 | Msa0493640 | 0.834203 | 3.433675e-56 | -8.615850e-47 |
| Msa0028610 | Msa0521440 | 0.830414 | 2.976304e-55 | -8.615850e-47 |
| Msa0028610 | Msa0570310 | 0.806127 | 9.566438e-50 | -8.615850e-47 |
| Msa0028610 | Msa0577140 | 0.858394 | 8.488300e-63 | -8.615850e-47 |
| Msa0028610 | Msa0581440 | 0.823849 | 1.110077e-53 | -8.615850e-47 |
| Msa0028610 | Msa0587060 | 0.817060 | 4.010465e-52 | -8.615850e-47 |
| Msa0028610 | Msa0624890 | 0.818612 | 1.789867e-52 | -8.615850e-47 |
| Msa0028610 | Msa0659640 | 0.804912 | 1.719914e-49 | -8.615850e-47 |
| Msa0028610 | Msa0665010 | 0.814876 | 1.232516e-51 | -8.615850e-47 |
| Msa0028610 | Msa0681040 | 0.810728 | 9.976702e-51 | -8.615850e-47 |
| Msa0028610 | Msa0704750 | 0.841666 | 4.138733e-58 | -8.615850e-47 |
| Msa0028610 | Msa0706710 | 0.816349 | 5.790813e-52 | -8.615850e-47 |
| Msa0028610 | Msa0727020 | 0.806786 | 6.944828e-50 | -8.615850e-47 |
| Msa0028610 | Msa0733570 | 0.817239 | 3.655842e-52 | -8.615850e-47 |
| Msa0028610 | Msa0736330 | 0.820128 | 8.080075e-53 | -8.615850e-47 |
| Msa0028610 | Msa0736930 | 0.808487 | 3.023020e-50 | -8.615850e-47 |
| Msa0028610 | Msa0766880 | 0.801700 | 7.955992e-49 | -8.615850e-47 |
| Msa0028610 | Msa0774680 | 0.815333 | 9.753101e-52 | -8.615850e-47 |
| Msa0028610 | Msa0778060 | 0.808305 | 3.306482e-50 | -8.615850e-47 |
| Msa0028610 | Msa0786970 | 0.846892 | 1.632520e-59 | -8.615850e-47 |
| Msa0028610 | Msa0793700 | 0.802810 | 4.701982e-49 | -8.615850e-47 |
| Msa0028610 | Msa0794040 | 0.817876 | 2.626269e-52 | -8.615850e-47 |
| Msa0028610 | Msa0811710 | 0.803380 | 3.583104e-49 | -8.615850e-47 |
| Msa0028610 | Msa0812230 | 0.806845 | 6.750282e-50 | -8.615850e-47 |
| Msa0028610 | Msa0821490 | 0.806938 | 6.449664e-50 | -8.615850e-47 |
| Msa0028610 | Msa0822380 | 0.816807 | 4.570372e-52 | -8.615850e-47 |
| Msa0028610 | Msa0855490 | 0.831507 | 1.605402e-55 | -8.615850e-47 |
| Msa0028610 | Msa0866960 | 0.831789 | 1.367872e-55 | -8.615850e-47 |
| Msa0028610 | Msa0907520 | 0.802273 | 6.065396e-49 | -8.615850e-47 |
| Msa0028610 | Msa0931090 | 0.805015 | 1.636780e-49 | -8.615850e-47 |
| Msa0028610 | Msa0981300 | 0.807349 | 5.278895e-50 | -8.615850e-47 |
| Msa0028610 | Msa0983030 | 0.804639 | 1.961116e-49 | -8.615850e-47 |
| Msa0028610 | Msa1025610 | 0.804677 | 1.925950e-49 | -8.615850e-47 |
| Msa0028610 | Msa1042380 | 0.804154 | 2.474796e-49 | -8.615850e-47 |
| Msa0028610 | Msa1049440 | 0.820060 | 8.375267e-53 | -8.615850e-47 |
| Msa0028610 | Msa1051410 | 0.841497 | 4.583961e-58 | -8.615850e-47 |
| Msa0028610 | Msa1072770 | 0.805777 | 1.133034e-49 | -8.615850e-47 |
| Msa0028610 | Msa1084630 | 0.856302 | 3.526713e-62 | -8.615850e-47 |
| Msa0028610 | Msa1086060 | 0.839606 | 1.433333e-57 | -8.615850e-47 |
| Msa0028610 | Msa1086160 | 0.827535 | 1.483063e-54 | -8.615850e-47 |
| Msa0028610 | Msa1086170 | 0.817103 | 3.923142e-52 | -8.615850e-47 |
| Msa0028610 | Msa1086830 | 0.805190 | 1.504634e-49 | -8.615850e-47 |
| Msa0028610 | Msa1122480 | 0.821336 | 4.263109e-53 | -8.615850e-47 |
| Msa0028610 | Msa1125100 | 0.811471 | 6.887467e-51 | -8.615850e-47 |
| Msa0028610 | Msa1125150 | 0.818385 | 2.014708e-52 | -8.615850e-47 |
| Msa0028610 | Msa1132320 | 0.813961 | 1.963371e-51 | -8.615850e-47 |
| Msa0028610 | Msa1161120 | 0.821861 | 3.224368e-53 | -8.615850e-47 |
| Msa0028610 | Msa1195860 | 0.813216 | 2.863294e-51 | -8.615850e-47 |
| Msa0028610 | Msa1201610 | 0.801775 | 7.680354e-49 | -8.615850e-47 |
| Msa0028610 | Msa1203090 | 0.805950 | 1.041949e-49 | -8.615850e-47 |
| Msa0028610 | Msa1248400 | 0.800759 | 1.239358e-48 | -8.615850e-47 |
| Msa0028610 | Msa1252040 | 0.802184 | 6.329217e-49 | -8.615850e-47 |
| Msa0028610 | Msa1255500 | 0.812125 | 4.961914e-51 | -8.615850e-47 |
| Msa0028610 | Msa1264230 | 0.842293 | 2.825938e-58 | -8.615850e-47 |
| Msa0028610 | Msa1265250 | 0.822224 | 2.655607e-53 | -8.615850e-47 |
| Msa0028610 | Msa1294520 | 0.806529 | 7.870463e-50 | -8.615850e-47 |
| Msa0028610 | Msa1302920 | 0.862753 | 4.054342e-64 | -8.615850e-47 |
| Msa0028610 | Msa1316160 | 0.817688 | 2.896441e-52 | -8.615850e-47 |
| Msa0028610 | Msa1330680 | 0.804657 | 1.944752e-49 | -8.615850e-47 |
| Msa0028610 | Msa1351560 | 0.850540 | 1.590003e-60 | -8.615850e-47 |
| Msa0028610 | Msa1354890 | 0.801554 | 8.523919e-49 | -8.615850e-47 |
| Msa0028610 | Msa1355020 | 0.800725 | 1.259760e-48 | -8.615850e-47 |
| Msa0028610 | Msa1365690 | 0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa0028610 | Msa1370830 | 0.803196 | 3.912374e-49 | -8.615850e-47 |
| Msa0028610 | Msa1371250 | 0.829051 | 6.390591e-55 | -8.615850e-47 |
| Msa0028610 | Msa1373590 | 0.808679 | 2.750928e-50 | -8.615850e-47 |
| Msa0028610 | Msa1385940 | 0.819691 | 1.016742e-52 | -8.615850e-47 |
| Msa0028610 | Msa1390410 | 0.803028 | 4.238701e-49 | -8.615850e-47 |
| Msa0028610 | Msa1394090 | 0.802999 | 4.296757e-49 | -8.615850e-47 |
| Msa0028610 | Msa1400330 | 0.854842 | 9.401295e-62 | -8.615850e-47 |
| Msa0028610 | Msa1415120 | 0.827369 | 1.625333e-54 | -8.615850e-47 |
| Msa0028610 | Msa1438420 | 0.852516 | 4.386355e-61 | -8.615850e-47 |
| Msa0028610 | Msa1439160 | 0.803810 | 2.918961e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028610 | MtrunA17_Chr1g0185231 | 98.628 | 656 | 9 | 0 | 1 | 656 | 1 | 656 | 0.0 | 1336 |
| Msa0028610 | MtrunA17_Chr7g0260181 | 83.308 | 659 | 104 | 4 | 1 | 656 | 1 | 656 | 0.0 | 1095 |
| Msa0028610 | MtrunA17_Chr2g0331951 | 57.387 | 643 | 274 | 0 | 3 | 645 | 5 | 647 | 0.0 | 769 |
| Msa0028610 | MtrunA17_Chr4g0043931 | 55.864 | 648 | 281 | 3 | 4 | 649 | 1 | 645 | 0.0 | 753 |
| Msa0028610 | MtrunA17_Chr5g0425251 | 55.112 | 626 | 280 | 1 | 21 | 645 | 30 | 655 | 0.0 | 747 |
| Msa0028610 | MtrunA17_Chr4g0004261 | 56.230 | 626 | 274 | 0 | 20 | 645 | 29 | 654 | 0.0 | 737 |
| Msa0028610 | MtrunA17_Chr6g0485191 | 52.194 | 638 | 298 | 4 | 15 | 649 | 56 | 689 | 0.0 | 702 |
| Msa0028610 | MtrunA17_Chr3g0115481 | 54.299 | 628 | 283 | 3 | 21 | 645 | 33 | 659 | 0.0 | 701 |
| Msa0028610 | MtrunA17_Chr2g0278931 | 53.409 | 616 | 285 | 2 | 20 | 634 | 34 | 648 | 0.0 | 674 |
| Msa0028610 | MtrunA17_Chr4g0043951 | 57.169 | 544 | 225 | 1 | 10 | 545 | 3 | 546 | 0.0 | 655 |
| Msa0028610 | MtrunA17_Chr5g0425241 | 47.191 | 623 | 316 | 5 | 26 | 637 | 26 | 646 | 0.0 | 583 |
| Msa0028610 | MtrunA17_Chr3g0124381 | 46.591 | 616 | 323 | 5 | 27 | 638 | 37 | 650 | 0.0 | 575 |
| Msa0028610 | MtrunA17_Chr3g0115461 | 44.099 | 644 | 344 | 5 | 2 | 637 | 17 | 652 | 0.0 | 547 |
| Msa0028610 | MtrunA17_Chr3g0124371 | 38.782 | 624 | 362 | 9 | 27 | 636 | 34 | 651 | 6.42e-153 | 457 |
| Msa0028610 | MtrunA17_Chr7g0222631 | 36.222 | 577 | 354 | 7 | 65 | 637 | 70 | 636 | 1.33e-128 | 395 |
| Msa0028610 | MtrunA17_Chr1g0173031 | 46.702 | 379 | 139 | 9 | 20 | 398 | 29 | 344 | 9.77e-101 | 311 |
| Msa0028610 | MtrunA17_Chr4g0043961 | 41.772 | 79 | 46 | 0 | 567 | 645 | 1 | 79 | 1.45e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028610 | AT3G51895.2 | 74.394 | 660 | 163 | 4 | 1 | 656 | 46 | 703 | 0.0 | 1018 |
| Msa0028610 | AT3G51895.1 | 74.394 | 660 | 163 | 4 | 1 | 656 | 1 | 658 | 0.0 | 1018 |
| Msa0028610 | AT4G02700.1 | 69.702 | 637 | 192 | 1 | 21 | 656 | 10 | 646 | 0.0 | 922 |
| Msa0028610 | AT3G15990.1 | 57.030 | 633 | 271 | 1 | 12 | 644 | 19 | 650 | 0.0 | 749 |
| Msa0028610 | AT1G23090.1 | 57.005 | 621 | 266 | 1 | 20 | 639 | 3 | 623 | 0.0 | 747 |
| Msa0028610 | AT4G08620.1 | 55.049 | 614 | 275 | 1 | 26 | 638 | 28 | 641 | 0.0 | 685 |
| Msa0028610 | AT5G19600.1 | 52.548 | 628 | 282 | 4 | 21 | 644 | 15 | 630 | 0.0 | 681 |
| Msa0028610 | AT1G78000.2 | 54.560 | 625 | 283 | 1 | 14 | 637 | 21 | 645 | 0.0 | 677 |
| Msa0028610 | AT1G78000.1 | 54.560 | 625 | 283 | 1 | 14 | 637 | 21 | 645 | 0.0 | 677 |
| Msa0028610 | AT1G78000.3 | 54.560 | 625 | 283 | 1 | 14 | 637 | 21 | 645 | 0.0 | 677 |
| Msa0028610 | AT1G22150.1 | 52.742 | 620 | 292 | 1 | 20 | 638 | 30 | 649 | 0.0 | 669 |
| Msa0028610 | AT1G22150.3 | 52.742 | 620 | 292 | 1 | 20 | 638 | 30 | 649 | 0.0 | 669 |
| Msa0028610 | AT1G22150.4 | 52.742 | 620 | 292 | 1 | 20 | 638 | 30 | 649 | 0.0 | 669 |
| Msa0028610 | AT1G78000.5 | 54.514 | 587 | 266 | 1 | 14 | 599 | 21 | 607 | 0.0 | 640 |
| Msa0028610 | AT1G78000.4 | 55.000 | 560 | 251 | 1 | 14 | 572 | 21 | 580 | 0.0 | 614 |
| Msa0028610 | AT1G22150.2 | 53.430 | 554 | 257 | 1 | 20 | 572 | 30 | 583 | 0.0 | 610 |
| Msa0028610 | AT5G10180.1 | 48.701 | 616 | 309 | 6 | 27 | 637 | 59 | 672 | 0.0 | 587 |
| Msa0028610 | AT1G23090.2 | 55.193 | 491 | 219 | 1 | 150 | 639 | 1 | 491 | 0.0 | 563 |
| Msa0028610 | AT1G23090.3 | 55.193 | 491 | 219 | 1 | 150 | 639 | 1 | 491 | 0.0 | 563 |
| Msa0028610 | AT1G23090.4 | 55.193 | 491 | 219 | 1 | 150 | 639 | 1 | 491 | 0.0 | 563 |
| Msa0028610 | AT1G77990.1 | 48.616 | 578 | 286 | 4 | 65 | 634 | 89 | 663 | 0.0 | 550 |
| Msa0028610 | AT1G78000.6 | 56.051 | 471 | 206 | 1 | 14 | 483 | 21 | 491 | 2.28e-176 | 512 |
| Msa0028610 | AT1G78000.7 | 53.933 | 445 | 204 | 1 | 129 | 572 | 1 | 445 | 9.02e-162 | 473 |
| Msa0028610 | AT3G12520.2 | 37.435 | 577 | 339 | 9 | 69 | 637 | 51 | 613 | 1.61e-126 | 389 |
| Msa0028610 | AT3G12520.1 | 37.435 | 577 | 339 | 9 | 69 | 637 | 67 | 629 | 3.03e-126 | 389 |
| Msa0028610 | AT5G13550.1 | 36.174 | 622 | 361 | 12 | 24 | 637 | 49 | 642 | 7.00e-125 | 385 |
| Msa0028610 | AT3G12520.3 | 39.085 | 481 | 276 | 7 | 69 | 544 | 67 | 535 | 6.52e-109 | 339 |
Find 161 sgRNAs with CRISPR-Local
Find 406 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTGTATATTACAGAATT+TGG | 0.105263 | 1_1:-53617991 | None:intergenic |
| ACCCTCTGATTCATCTCTTT+TGG | 0.151425 | 1_1:-53618716 | None:intergenic |
| TTTCTTCCAACTTAGGAATT+AGG | 0.175398 | 1_1:-53618928 | None:intergenic |
| CTGGAATTGGAGAAAATTAA+AGG | 0.215965 | 1_1:+53619054 | Msa0028610:three_prime_UTR |
| TGGAGGAAGGTTGGCAAGTT+TGG | 0.241408 | 1_1:-53612273 | None:intergenic |
| GCCAACCTTCCTCCAATTCT+TGG | 0.242711 | 1_1:+53612281 | Msa0028610:CDS |
| AGAAACAACCGAGGTTCTTT+TGG | 0.253280 | 1_1:+53615184 | Msa0028610:CDS |
| CGTCTGCATTAGCGCATATA+TGG | 0.260758 | 1_1:+53617775 | Msa0028610:CDS |
| GCTTGGTGCCCATTCAAATA+TGG | 0.263411 | 1_1:-53612168 | None:intergenic |
| CCGAATGCAAATCGTGTTTC+CGG | 0.263737 | 1_1:+53618027 | Msa0028610:CDS |
| TTCTTCATCACCTCACTTCC+AGG | 0.268686 | 1_1:-53618592 | None:intergenic |
| GCCGTTGGCGTCCGTTATAC+TGG | 0.273981 | 1_1:+53615221 | Msa0028610:CDS |
| CTTGCATTGGCAAAGTAAAT+TGG | 0.276343 | 1_1:-53618075 | None:intergenic |
| AAGCTTCATTGGGTCTCTTT+AGG | 0.281055 | 1_1:+53613372 | Msa0028610:CDS |
| AAGGCCAAGGACATTTGTTT+TGG | 0.282863 | 1_1:+53617960 | Msa0028610:CDS |
| GTCTTTGGCAGTGTTGAAAT+TGG | 0.299924 | 1_1:+53617803 | Msa0028610:CDS |
| CAGCAGCTGAAATCAATTCT+AGG | 0.300141 | 1_1:+53614239 | Msa0028610:CDS |
| GTGATTGAGAATGAGGAGAT+AGG | 0.303308 | 1_1:-53611783 | None:intergenic |
| GCATATATGGGCGTTGTCTT+TGG | 0.305788 | 1_1:+53617788 | Msa0028610:CDS |
| AATTTCCTCCTACATCCTTT+TGG | 0.307255 | 1_1:-53618633 | None:intergenic |
| AAAAGGATGTAGGAGGAAAT+TGG | 0.320530 | 1_1:+53618635 | Msa0028610:CDS |
| AATGGCCTTTGAAAAGGTTC+TGG | 0.324930 | 1_1:+53619035 | Msa0028610:three_prime_UTR |
| CCTATGATTACAGCTTGTTT+TGG | 0.325648 | 1_1:+53618564 | Msa0028610:intron |
| CTGTCACATGCAGCCATAGT+AGG | 0.326137 | 1_1:+53614182 | Msa0028610:CDS |
| TTCACGGCCGAACGCGAAAA+TGG | 0.329931 | 1_1:-53617554 | None:intergenic |
| CTTTGAAAAGGTTCTGGAAT+TGG | 0.330499 | 1_1:+53619041 | Msa0028610:three_prime_UTR |
| ATATATAGTTGAGAAGATTA+TGG | 0.332164 | 1_1:+53611941 | Msa0028610:exon |
| GATGGGTAGTTCAAGGGATT+TGG | 0.335800 | 1_1:+53613220 | Msa0028610:CDS |
| TTTACCATGAGAATTATAAA+TGG | 0.343114 | 1_1:+53619017 | Msa0028610:three_prime_UTR |
| TTCACAGCTACATTCTTTGC+TGG | 0.345288 | 1_1:+53613341 | Msa0028610:CDS |
| GAGCTATAATGCCAACAATA+AGG | 0.345823 | 1_1:-53616264 | None:intergenic |
| AACCTCCTCAATGGATCATC+TGG | 0.355664 | 1_1:-53612092 | None:intergenic |
| AAGCATTGCAGATACAATTA+TGG | 0.359813 | 1_1:-53617693 | None:intergenic |
| TTGATAGCTGTGGTCATATA+TGG | 0.367436 | 1_1:-53616235 | None:intergenic |
| TAGGAAATTTCTTCCAACTT+AGG | 0.380941 | 1_1:-53618935 | None:intergenic |
| CTATGGCTCAAAATATTTAG+TGG | 0.384617 | 1_1:-53618862 | None:intergenic |
| ACCGTTAATTTATGCAATGA+TGG | 0.385050 | 1_1:+53613202 | Msa0028610:CDS |
| TCCACCATCACTCACAGATT+TGG | 0.390915 | 1_1:+53616201 | Msa0028610:CDS |
| TATATAGTTGAGAAGATTAT+GGG | 0.392854 | 1_1:+53611942 | Msa0028610:exon |
| CCCATCATTGCATAAATTAA+CGG | 0.402423 | 1_1:-53613203 | None:intergenic |
| TATGATGATTACCCATGTTC+AGG | 0.406136 | 1_1:+53611975 | Msa0028610:CDS |
| AACTCACATAGTCCAAGAAT+TGG | 0.411726 | 1_1:-53612293 | None:intergenic |
| ACCTCTTGCTACCTCACAAC+TGG | 0.412059 | 1_1:+53617439 | Msa0028610:CDS |
| GAAGACAGAATTAAAGATAC+AGG | 0.413818 | 1_1:+53618242 | Msa0028610:CDS |
| TTTGGTTATTGCAGTGGAGG+TGG | 0.420288 | 1_1:+53614586 | Msa0028610:intron |
| TCCTCCCATGAACCCTACTA+TGG | 0.424696 | 1_1:-53614195 | None:intergenic |
| TTGCATCCTAATTCCTAAGT+TGG | 0.424756 | 1_1:+53618922 | Msa0028610:three_prime_UTR |
| ATTATAAATGGCCTTTGAAA+AGG | 0.428322 | 1_1:+53619029 | Msa0028610:three_prime_UTR |
| ATGACCACAGCTATCAAAAC+TGG | 0.429051 | 1_1:+53616241 | Msa0028610:CDS |
| GTCTGCATTAGCGCATATAT+GGG | 0.430147 | 1_1:+53617776 | Msa0028610:CDS |
| TGATTGAGAATGAGGAGATA+GGG | 0.430777 | 1_1:-53611782 | None:intergenic |
| CGTTATACTGGGAAGTGTGC+TGG | 0.431245 | 1_1:+53615233 | Msa0028610:CDS |
| ATCAAAACTGGCCTTATTGT+TGG | 0.431517 | 1_1:+53616253 | Msa0028610:CDS |
| AATCTTTAGAATTAGAATTC+CGG | 0.433702 | 1_1:-53618046 | None:intergenic |
| GGCAGTTGGATCTCTTCTGA+TGG | 0.434035 | 1_1:+53613256 | Msa0028610:CDS |
| TGCAGCCATAGTAGGGTTCA+TGG | 0.439490 | 1_1:+53614190 | Msa0028610:CDS |
| CTTGGTGCCCATTCAAATAT+GGG | 0.439545 | 1_1:-53612167 | None:intergenic |
| AACAAAGAGATGATAGCTAT+TGG | 0.443400 | 1_1:+53617391 | Msa0028610:CDS |
| TTTGTTCTATTACACTCCTC+TGG | 0.447769 | 1_1:+53617658 | Msa0028610:CDS |
| GAAAGAACCAACTATGTTCA+TGG | 0.448133 | 1_1:-53617416 | None:intergenic |
| AGTTCAAGGGATTTGGCAGT+TGG | 0.456451 | 1_1:+53613227 | Msa0028610:CDS |
| TTGGGTAGGATTAACCTCAT+TGG | 0.460340 | 1_1:-53613291 | None:intergenic |
| TGGCATCACTATTGCTAGCT+TGG | 0.462798 | 1_1:+53612226 | Msa0028610:CDS |
| CACTTGAACACCGTGGTGCT+CGG | 0.463889 | 1_1:-53615271 | None:intergenic |
| TCTTCTGATGGGTTCCATGT+TGG | 0.465867 | 1_1:+53613268 | Msa0028610:CDS |
| CCGGAAACACGATTTGCATT+CGG | 0.466507 | 1_1:-53618027 | None:intergenic |
| GCATCCAGCATTATAGTTCA+CGG | 0.466809 | 1_1:-53617570 | None:intergenic |
| TACTATTTGTTGCAAGGCCA+AGG | 0.467032 | 1_1:+53617947 | Msa0028610:CDS |
| ATTGGAACCATGAACATAGT+TGG | 0.470036 | 1_1:+53617409 | Msa0028610:CDS |
| ATGCAATGATGGGTAGTTCA+AGG | 0.474788 | 1_1:+53613213 | Msa0028610:CDS |
| AGGTGGGAAAGCGCTGTGTT+GGG | 0.476059 | 1_1:+53614603 | Msa0028610:CDS |
| CTCTCTTAAATAGCTTGCAT+TGG | 0.477563 | 1_1:-53618088 | None:intergenic |
| CAGATAGGAGAATTGAAGAA+AGG | 0.483632 | 1_1:+53616172 | Msa0028610:intron |
| TGATTCTTAAACCTCCTCAA+TGG | 0.483943 | 1_1:-53612101 | None:intergenic |
| ATGAAGCAGCCATCCATCTC+TGG | 0.484288 | 1_1:+53617729 | Msa0028610:CDS |
| ATTATTACTATTACAATATG+TGG | 0.484678 | 1_1:+53618818 | Msa0028610:three_prime_UTR |
| TTGGTTATTGCAGTGGAGGT+GGG | 0.486649 | 1_1:+53614587 | Msa0028610:intron |
| AGGTTGCAATATCAGTGCTT+CGG | 0.492752 | 1_1:+53617920 | Msa0028610:intron |
| CTACTATGGCTGCATGTGAC+AGG | 0.495854 | 1_1:-53614181 | None:intergenic |
| GCAGTTGGATCTCTTCTGAT+GGG | 0.498638 | 1_1:+53613257 | Msa0028610:CDS |
| AAGGCCATTTATAATTCTCA+TGG | 0.498646 | 1_1:-53619021 | None:intergenic |
| AAGAACTCAACAACTTATGT+AGG | 0.500061 | 1_1:-53618954 | None:intergenic |
| TTTCCCAAAACAAATGTCCT+TGG | 0.500266 | 1_1:-53617964 | None:intergenic |
| ATAATTGTATCTGCAATGCT+TGG | 0.501731 | 1_1:+53617695 | Msa0028610:CDS |
| CAACAAATCCAGCTTCCAAA+AGG | 0.505659 | 1_1:+53618618 | Msa0028610:CDS |
| GGTTGAAGTGATTGAGAATG+AGG | 0.511798 | 1_1:-53611790 | None:intergenic |
| TTGAAATCTGATCTCATAGC+TGG | 0.511965 | 1_1:+53612206 | Msa0028610:CDS |
| TGCAATGATGGGTAGTTCAA+GGG | 0.512364 | 1_1:+53613214 | Msa0028610:CDS |
| GCAGTTGGAACTGTGGCAGT+TGG | 0.515482 | 1_1:+53613242 | Msa0028610:CDS |
| CCGTTGGCGTCCGTTATACT+GGG | 0.520515 | 1_1:+53615222 | Msa0028610:CDS |
| ATTTGTCAATCTTCCAGAGA+TGG | 0.520606 | 1_1:-53617742 | None:intergenic |
| TCAACGTTCATTCCTGAACA+TGG | 0.525910 | 1_1:-53611987 | None:intergenic |
| TGTTGGCATTATAGCTCTTG+CGG | 0.529365 | 1_1:+53616270 | Msa0028610:CDS |
| GAGGTGGGAAAGCGCTGTGT+TGG | 0.531070 | 1_1:+53614602 | Msa0028610:CDS |
| TCCAAGAATTGGAGGAAGGT+TGG | 0.531977 | 1_1:-53612282 | None:intergenic |
| TGTCACATGCAGCCATAGTA+GGG | 0.533525 | 1_1:+53614183 | Msa0028610:CDS |
| CCGTTAATTTATGCAATGAT+GGG | 0.538397 | 1_1:+53613203 | Msa0028610:CDS |
| TGCAATTGACATCACAATGT+TGG | 0.540759 | 1_1:-53617606 | None:intergenic |
| AAGAACTGAAAAGTGTAGCT+TGG | 0.541491 | 1_1:-53612185 | None:intergenic |
| GGTGTCAGCAATGACGCCGT+TGG | 0.542147 | 1_1:+53615206 | Msa0028610:CDS |
| CAGCACACTTCCCAGTATAA+CGG | 0.546747 | 1_1:-53615232 | None:intergenic |
| GGTTACTACTATTTGTTGCA+AGG | 0.547106 | 1_1:+53617941 | Msa0028610:CDS |
| TCACATAGTCCAAGAATTGG+AGG | 0.548928 | 1_1:-53612290 | None:intergenic |
| TCGGCCGTGAACTATAATGC+TGG | 0.554904 | 1_1:+53617566 | Msa0028610:CDS |
| AAAGAGATGAATCAGAGGGT+TGG | 0.561882 | 1_1:+53618719 | Msa0028610:CDS |
| ATTAACCTCATTGGCCAACA+TGG | 0.564213 | 1_1:-53613282 | None:intergenic |
| GCAGCCATAGTAGGGTTCAT+GGG | 0.565129 | 1_1:+53614191 | Msa0028610:CDS |
| ACCAAATCTGTGAGTGATGG+TGG | 0.568879 | 1_1:-53616202 | None:intergenic |
| TCTTTCCAGATGATCCATTG+AGG | 0.569076 | 1_1:+53612087 | Msa0028610:CDS |
| GTTGGAAATATTGATACAAG+TGG | 0.570042 | 1_1:+53618393 | Msa0028610:CDS |
| TGTTGAGAGTTGAGACACTT+AGG | 0.574813 | 1_1:-53611719 | None:intergenic |
| CTCAAGGTGGATCGATGAAG+AGG | 0.580742 | 1_1:+53618220 | Msa0028610:CDS |
| AAACACCTTGCTTATGCATG+TGG | 0.583289 | 1_1:+53611852 | Msa0028610:five_prime_UTR |
| TTATTGTTCATAGGATCTCA+AGG | 0.585365 | 1_1:+53618204 | Msa0028610:intron |
| CGGATACGATATCAGCAGCA+TGG | 0.585791 | 1_1:-53614277 | None:intergenic |
| GGATACGATATCAGCAGCAT+GGG | 0.586482 | 1_1:-53614276 | None:intergenic |
| GCTAGCTTGGCTATTCCTCA+AGG | 0.586902 | 1_1:+53612239 | Msa0028610:CDS |
| GTCAATCTTCCAGAGATGGA+TGG | 0.590877 | 1_1:-53617738 | None:intergenic |
| GGGTTCCATGTTGGCCAATG+AGG | 0.591059 | 1_1:+53613277 | Msa0028610:CDS |
| GTTCTATTACACTCCTCTGG+TGG | 0.592713 | 1_1:+53617661 | Msa0028610:CDS |
| TTCCAGATGATCCATTGAGG+AGG | 0.598956 | 1_1:+53612090 | Msa0028610:CDS |
| TTTCAGGAAGGAATAGCTGT+GGG | 0.600243 | 1_1:+53617328 | Msa0028610:intron |
| CGAGCACCACGGTGTTCAAG+TGG | 0.600656 | 1_1:+53615272 | Msa0028610:CDS |
| AGAATGTAGCTGTGAAAGCA+AGG | 0.605756 | 1_1:-53613334 | None:intergenic |
| GGATTTGGCAGTTGGAACTG+TGG | 0.605836 | 1_1:+53613235 | Msa0028610:CDS |
| AAGACAGAATTAAAGATACA+GGG | 0.609710 | 1_1:+53618243 | Msa0028610:CDS |
| TCCAGCTTCCAAAAGGATGT+AGG | 0.611724 | 1_1:+53618625 | Msa0028610:CDS |
| TCCCAAAAGAGATGAATCAG+AGG | 0.611733 | 1_1:+53618714 | Msa0028610:CDS |
| ACCAGTTGTGAGGTAGCAAG+AGG | 0.613006 | 1_1:-53617440 | None:intergenic |
| CCCAGTATAACGGACGCCAA+CGG | 0.613528 | 1_1:-53615222 | None:intergenic |
| ATGCAAGCTATTTAAGAGAG+AGG | 0.614022 | 1_1:+53618091 | Msa0028610:CDS |
| GTGCAGGTTAGGGTTTATCG+TGG | 0.617383 | 1_1:+53614154 | Msa0028610:intron |
| GCTAGTGAAAATGATGAGGA+TGG | 0.624427 | 1_1:-53611742 | None:intergenic |
| AGCTTCCAAAAGGATGTAGG+AGG | 0.626533 | 1_1:+53618628 | Msa0028610:CDS |
| AGAAGCTAGTGAAAATGATG+AGG | 0.627907 | 1_1:-53611746 | None:intergenic |
| CATGGGAGGAGCAGCTACAG+TGG | 0.630489 | 1_1:+53614208 | Msa0028610:CDS |
| CCCAAAAGAGATGAATCAGA+GGG | 0.633313 | 1_1:+53618715 | Msa0028610:CDS |
| TTGGCATAGCTAATGCCTTG+AGG | 0.644841 | 1_1:-53612254 | None:intergenic |
| ATAGTCCAAGAATTGGAGGA+AGG | 0.645921 | 1_1:-53612286 | None:intergenic |
| AAGTTCCACATGCATAAGCA+AGG | 0.648713 | 1_1:-53611857 | None:intergenic |
| AACGTTGATGAGAGTGTGCA+TGG | 0.652394 | 1_1:+53612002 | Msa0028610:CDS |
| TTTGGTCAATCCTGGAAGTG+AGG | 0.652558 | 1_1:+53618582 | Msa0028610:CDS |
| GATGATGTTTACCAGTTGTG+AGG | 0.653692 | 1_1:-53617450 | None:intergenic |
| TTGGTGCCCATTCAAATATG+GGG | 0.657181 | 1_1:-53612166 | None:intergenic |
| AGACAGAATTAAAGATACAG+GGG | 0.658453 | 1_1:+53618244 | Msa0028610:CDS |
| CAACGTTCATTCCTGAACAT+GGG | 0.662994 | 1_1:-53611986 | None:intergenic |
| TTCACTCACGCCGAGCACCA+CGG | 0.668149 | 1_1:+53615261 | Msa0028610:CDS |
| AGAGGAGTGTAATAGAACAA+AGG | 0.670114 | 1_1:-53617656 | None:intergenic |
| AATACCAAATCTGTGAGTGA+TGG | 0.675598 | 1_1:-53616205 | None:intergenic |
| TTACGAAGTATCTTGTAACA+AGG | 0.677468 | 1_1:-53614647 | None:intergenic |
| ATCATTGCATAAATTAACGG+TGG | 0.681126 | 1_1:-53613200 | None:intergenic |
| GCTGACACCCAAAAGAACCT+CGG | 0.684039 | 1_1:-53615192 | None:intergenic |
| GCCATAGTAGGGTTCATGGG+AGG | 0.684143 | 1_1:+53614194 | Msa0028610:CDS |
| TGATGAGAGTGTGCATGGTG+TGG | 0.685946 | 1_1:+53612007 | Msa0028610:CDS |
| TATGTTATACTGGATATGAG+TGG | 0.705748 | 1_1:+53618281 | Msa0028610:CDS |
| AAATTGGATCTATCTGACAG+TGG | 0.706142 | 1_1:+53618651 | Msa0028610:CDS |
| ATGGCTGCTAGTACCACCAG+AGG | 0.717575 | 1_1:-53617674 | None:intergenic |
| ATGTAGCTGTGAAAGCAAGG+TGG | 0.720087 | 1_1:-53613331 | None:intergenic |
| TGCAGAGCAAGAAACAACCG+AGG | 0.739760 | 1_1:+53615175 | Msa0028610:intron |
| TTGTTCATAGGATCTCAAGG+TGG | 0.742236 | 1_1:+53618207 | Msa0028610:intron |
| TGCTCACCACTTGAACACCG+TGG | 0.755603 | 1_1:-53615278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATTAACAATAAAAAAA+CGG | - | chr1_1:53611814-53611833 | None:intergenic | 10.0% |
| !!! | ATAAATATATACCATTTTTT+TGG | + | chr1_1:53612348-53612367 | Msa0028610:intron | 10.0% |
| !!! | TAAGTAAAAATAATAGTTTT+TGG | - | chr1_1:53612617-53612636 | None:intergenic | 10.0% |
| !!! | ACTAGTTTATATATTTTTTT+GGG | + | chr1_1:53612904-53612923 | Msa0028610:intron | 10.0% |
| !!! | AAATATATTATTTTGCTAAT+TGG | - | chr1_1:53612969-53612988 | None:intergenic | 10.0% |
| !! | TAAATAAAATAATAGCAATA+TGG | + | chr1_1:53613514-53613533 | Msa0028610:intron | 10.0% |
| !! | AAATAAAATAATAGCAATAT+GGG | + | chr1_1:53613515-53613534 | Msa0028610:intron | 10.0% |
| !! | AATTAAATTATTCTGAATTA+AGG | + | chr1_1:53613681-53613700 | Msa0028610:intron | 10.0% |
| !! | TTAACAAAAAAATAAATACT+TGG | + | chr1_1:53613720-53613739 | Msa0028610:intron | 10.0% |
| !! | TATGTTTGTTTATATAAAAT+AGG | - | chr1_1:53614488-53614507 | None:intergenic | 10.0% |
| !!! | AAATTAATTTAACTTGAAAT+TGG | + | chr1_1:53615117-53615136 | Msa0028610:intron | 10.0% |
| !! | TTCTTTCAAAAAAAAAAAAA+AGG | + | chr1_1:53616842-53616861 | Msa0028610:intron | 10.0% |
| !!! | ATTAATAGTTATTTTACAAT+CGG | + | chr1_1:53617057-53617076 | Msa0028610:intron | 10.0% |
| !! | TATAAAAATTATCATATTGA+TGG | + | chr1_1:53617367-53617386 | Msa0028610:CDS | 10.0% |
| !! | AATAAGCTATAAAAAATATT+TGG | - | chr1_1:53618507-53618526 | None:intergenic | 10.0% |
| !! | ATTTAGTAAAACCAAAAAAA+TGG | - | chr1_1:53612362-53612381 | None:intergenic | 15.0% |
| !!! | TAGCAACAAAATATTTTTTA+TGG | - | chr1_1:53612860-53612879 | None:intergenic | 15.0% |
| !!! | GACTAGTTTATATATTTTTT+TGG | + | chr1_1:53612903-53612922 | Msa0028610:intron | 15.0% |
| !! | TCATTGTAATAATGTAATAT+GGG | - | chr1_1:53613659-53613678 | None:intergenic | 15.0% |
| !! | TTCATTGTAATAATGTAATA+TGG | - | chr1_1:53613660-53613679 | None:intergenic | 15.0% |
| !! | TTGATAAATTCTTGATAAAA+GGG | - | chr1_1:53613936-53613955 | None:intergenic | 15.0% |
| !! | ATCAATAATATTTAAGGAAA+GGG | - | chr1_1:53614094-53614113 | None:intergenic | 15.0% |
| !! | TAGATGTTTATAGAAATTAT+GGG | + | chr1_1:53614880-53614899 | Msa0028610:intron | 15.0% |
| !! | CACATAAAAATTAATCTAAT+CGG | - | chr1_1:53615309-53615328 | None:intergenic | 15.0% |
| !!! | ATTTCTAAAAGTGTATTATT+AGG | - | chr1_1:53616336-53616355 | None:intergenic | 15.0% |
| !!! | TAATAATACACTTTTAGAAA+TGG | + | chr1_1:53616335-53616354 | Msa0028610:intron | 15.0% |
| !!! | CAAAAAAAAAAAAAAGGTTT+TGG | + | chr1_1:53616848-53616867 | Msa0028610:intron | 15.0% |
| !! | TTTAAAAAAAGAGTAGTATA+AGG | - | chr1_1:53616960-53616979 | None:intergenic | 15.0% |
| !!! | ACTCTTTTTTTAAAAAGAAA+TGG | + | chr1_1:53616966-53616985 | Msa0028610:intron | 15.0% |
| !!! | CTCTTTTTTTAAAAAGAAAT+GGG | + | chr1_1:53616967-53616986 | Msa0028610:intron | 15.0% |
| !!! | TAACTATTAATTATTTCTCT+TGG | - | chr1_1:53617048-53617067 | None:intergenic | 15.0% |
| !!! | ATACTTTTAAATCTATGAAA+TGG | + | chr1_1:53617195-53617214 | Msa0028610:intron | 15.0% |
| !! | TATTACATATGACATTTAAT+TGG | - | chr1_1:53617240-53617259 | None:intergenic | 15.0% |
| !!! | AATTTTGAATTATGTTATAC+TGG | + | chr1_1:53618271-53618290 | Msa0028610:CDS | 15.0% |
| !! | ATTATTACTATTACAATATG+TGG | + | chr1_1:53618818-53618837 | Msa0028610:three_prime_UTR | 15.0% |
| !! | ATATATAGTTGAGAAGATTA+TGG | + | chr1_1:53611941-53611960 | Msa0028610:exon | 20.0% |
| !! | TATATAGTTGAGAAGATTAT+GGG | + | chr1_1:53611942-53611961 | Msa0028610:exon | 20.0% |
| !!! | TTGGTTTTACTAAATGAAAT+AGG | + | chr1_1:53612367-53612386 | Msa0028610:intron | 20.0% |
| !!! | ATATTTCTTTTTAACTCGTT+TGG | + | chr1_1:53612654-53612673 | Msa0028610:intron | 20.0% |
| !!! | TTATTTTGCTAATTGGTAAT+TGG | - | chr1_1:53612962-53612981 | None:intergenic | 20.0% |
| !!! | TAATTAGCAAGAAAAGTATA+TGG | - | chr1_1:53613083-53613102 | None:intergenic | 20.0% |
| !! | CTTGATAAATTCTTGATAAA+AGG | - | chr1_1:53613937-53613956 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGC+CGG | + | chr1_1:53613970-53613989 | Msa0028610:intron | 20.0% |
| !! | CATCAATAATATTTAAGGAA+AGG | - | chr1_1:53614095-53614114 | None:intergenic | 20.0% |
| !! | CTAGATGTTTATAGAAATTA+TGG | + | chr1_1:53614879-53614898 | Msa0028610:intron | 20.0% |
| !! | GTTTGCATATAAATATTTAC+AGG | - | chr1_1:53615399-53615418 | None:intergenic | 20.0% |
| !!! | TAATTTTTTACTTTCCTTCA+AGG | + | chr1_1:53615626-53615645 | Msa0028610:intron | 20.0% |
| !! | TAAGAATACTCATTGAATAT+GGG | - | chr1_1:53615792-53615811 | None:intergenic | 20.0% |
| !! | ATAAGAATACTCATTGAATA+TGG | - | chr1_1:53615793-53615812 | None:intergenic | 20.0% |
| !! | TTATCTTATATACATGACAT+CGG | + | chr1_1:53616063-53616082 | Msa0028610:intron | 20.0% |
| !!! | TAACATATTACTACTTTTGT+TGG | + | chr1_1:53616096-53616115 | Msa0028610:intron | 20.0% |
| !! | GTCATTAAATACAAAACAAT+AGG | + | chr1_1:53616810-53616829 | Msa0028610:intron | 20.0% |
| !! | TGCATATATATGAAAGTTAT+TGG | + | chr1_1:53616871-53616890 | Msa0028610:intron | 20.0% |
| !! | ATTCTTCTAATTATATCATG+AGG | + | chr1_1:53617172-53617191 | Msa0028610:intron | 20.0% |
| !! | TTAACTAAATTAGCATATCT+AGG | - | chr1_1:53617271-53617290 | None:intergenic | 20.0% |
| !! | TAGTTAATGTAGATTTCAAT+AGG | + | chr1_1:53617284-53617303 | Msa0028610:intron | 20.0% |
| !! | ATAAAAATGATAACTCTTTC+AGG | + | chr1_1:53617530-53617549 | Msa0028610:intron | 20.0% |
| !! | TAAAAATGATAACTCTTTCA+GGG | + | chr1_1:53617531-53617550 | Msa0028610:intron | 20.0% |
| !!! | TAATGTGTTTTCTTATGTTT+AGG | + | chr1_1:53617900-53617919 | Msa0028610:intron | 20.0% |
| !! | TTTCTGTATATTACAGAATT+TGG | - | chr1_1:53617994-53618013 | None:intergenic | 20.0% |
| !!! | AATCTTTAGAATTAGAATTC+CGG | - | chr1_1:53618049-53618068 | None:intergenic | 20.0% |
| !! | ATAGGAATGAAAAGATTTAA+AGG | - | chr1_1:53618549-53618568 | None:intergenic | 20.0% |
| !! | TTTACCATGAGAATTATAAA+TGG | + | chr1_1:53619017-53619036 | Msa0028610:three_prime_UTR | 20.0% |
| ! | TACTTCATAGACTTCAAAAA+TGG | - | chr1_1:53612050-53612069 | None:intergenic | 25.0% |
| !!! | ATTTTTTCCCCATATTTGAA+TGG | + | chr1_1:53612159-53612178 | Msa0028610:CDS | 25.0% |
| !!! | TTTTTTCCCCATATTTGAAT+GGG | + | chr1_1:53612160-53612179 | Msa0028610:CDS | 25.0% |
| !! | ATGTGTTTTCAAATTCAAAC+TGG | + | chr1_1:53612413-53612432 | Msa0028610:intron | 25.0% |
| ! | ATTCAAACTGGACATTAAAT+CGG | + | chr1_1:53612425-53612444 | Msa0028610:intron | 25.0% |
| !! | TTAGTCAGTCCTAAAATTTT+TGG | - | chr1_1:53612797-53612816 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGGGACATTGATA+TGG | + | chr1_1:53612916-53612935 | Msa0028610:intron | 25.0% |
| !! | GAAAAGTATATGGAAGAAAA+TGG | - | chr1_1:53613073-53613092 | None:intergenic | 25.0% |
| ! | ATGATATGTTAGTATGTTAC+TGG | + | chr1_1:53613480-53613499 | Msa0028610:intron | 25.0% |
| ! | ATAATAGCAATATGGGAAAA+AGG | + | chr1_1:53613522-53613541 | Msa0028610:intron | 25.0% |
| ! | AGAATATATATATCCTAACC+AGG | + | chr1_1:53613547-53613566 | Msa0028610:intron | 25.0% |
| ! | CGGCAAATAACAAATTTAAT+TGG | - | chr1_1:53613972-53613991 | None:intergenic | 25.0% |
| ! | CCATGCATCAATAATATTTA+AGG | - | chr1_1:53614100-53614119 | None:intergenic | 25.0% |
| ! | CCTTAAATATTATTGATGCA+TGG | + | chr1_1:53614097-53614116 | Msa0028610:intron | 25.0% |
| ! | TATTTATTTGGTTATTGCAG+TGG | + | chr1_1:53614580-53614599 | Msa0028610:intron | 25.0% |
| ! | ATTACCTAACACATATTCAT+TGG | + | chr1_1:53614672-53614691 | Msa0028610:intron | 25.0% |
| ! | CTAGCATAATAATTAATGCA+AGG | - | chr1_1:53614858-53614877 | None:intergenic | 25.0% |
| ! | TTTATATGCAAACAACAAGT+TGG | + | chr1_1:53615406-53615425 | Msa0028610:intron | 25.0% |
| !!! | ACAAGTTGGTTTGATTTAAT+CGG | + | chr1_1:53615420-53615439 | Msa0028610:intron | 25.0% |
| ! | ATTCAATGAGTATTCTTATC+TGG | + | chr1_1:53615794-53615813 | Msa0028610:intron | 25.0% |
| ! | TAGAAAAATGATTCATTTGC+AGG | - | chr1_1:53615825-53615844 | None:intergenic | 25.0% |
| ! | AGTGTATTATTAGGCAATAA+AGG | - | chr1_1:53616327-53616346 | None:intergenic | 25.0% |
| ! | ATTTCATTCTTCTTTGGTTA+AGG | - | chr1_1:53616437-53616456 | None:intergenic | 25.0% |
| ! | AGTTTCATTTCATTCTTCTT+TGG | - | chr1_1:53616443-53616462 | None:intergenic | 25.0% |
| ! | TGAGGCAATAACTTTATTAT+TGG | + | chr1_1:53616474-53616493 | Msa0028610:intron | 25.0% |
| ! | ATCGAAATAATTGTCAAATG+AGG | - | chr1_1:53616547-53616566 | None:intergenic | 25.0% |
| ! | TATATGAAAGTTATTGGTAG+TGG | + | chr1_1:53616877-53616896 | Msa0028610:intron | 25.0% |
| !!! | ACTAATGATTATTTTAGAGC+CGG | + | chr1_1:53617020-53617039 | Msa0028610:intron | 25.0% |
| !! | TTAATTATTTCTCTTGGAAC+CGG | - | chr1_1:53617042-53617061 | None:intergenic | 25.0% |
| ! | GATGAAATTCAAATTCTTGT+AGG | - | chr1_1:53617084-53617103 | None:intergenic | 25.0% |
| ! | AATGTGATAAGTATTCCATA+AGG | - | chr1_1:53617148-53617167 | None:intergenic | 25.0% |
| ! | ATGACATTTAATTGGAAGAA+AGG | - | chr1_1:53617232-53617251 | None:intergenic | 25.0% |
| ! | GTAATACTGATGTTAAGATT+TGG | - | chr1_1:53617477-53617496 | None:intergenic | 25.0% |
| !! | AAGGAAAAAAGCAAATTTTC+AGG | - | chr1_1:53618124-53618143 | None:intergenic | 25.0% |
| ! | AAGACAGAATTAAAGATACA+GGG | + | chr1_1:53618243-53618262 | Msa0028610:CDS | 25.0% |
| !! | AACTTGCAGTGTAATTTTAT+TGG | + | chr1_1:53618365-53618384 | Msa0028610:intron | 25.0% |
| !! | ATACATCTTTCATTTTCCTA+TGG | - | chr1_1:53618882-53618901 | None:intergenic | 25.0% |
| !! | ATTATAAATGGCCTTTGAAA+AGG | + | chr1_1:53619029-53619048 | Msa0028610:three_prime_UTR | 25.0% |
| ATAGACTTCAAAAATGGTTG+AGG | - | chr1_1:53612044-53612063 | None:intergenic | 30.0% | |
| TTGAATTGTGACTAGATGAA+TGG | - | chr1_1:53612531-53612550 | None:intergenic | 30.0% | |
| !!! | TTGGTATAGACTCTTTTTTG+AGG | - | chr1_1:53612943-53612962 | None:intergenic | 30.0% |
| ATCATTGCATAAATTAACGG+TGG | - | chr1_1:53613203-53613222 | None:intergenic | 30.0% | |
| ACCGTTAATTTATGCAATGA+TGG | + | chr1_1:53613202-53613221 | Msa0028610:CDS | 30.0% | |
| CCCATCATTGCATAAATTAA+CGG | - | chr1_1:53613206-53613225 | None:intergenic | 30.0% | |
| CCGTTAATTTATGCAATGAT+GGG | + | chr1_1:53613203-53613222 | Msa0028610:CDS | 30.0% | |
| ! | GAGAAAAAGCTTAGGATTTT+GGG | - | chr1_1:53613312-53613331 | None:intergenic | 30.0% |
| TGTTAGTATGTTACTGGATA+TGG | + | chr1_1:53613486-53613505 | Msa0028610:intron | 30.0% | |
| ACAAGACAACACAAAAAGAA+GGG | - | chr1_1:53613585-53613604 | None:intergenic | 30.0% | |
| TCTGAATTAAGGCATATACT+TGG | + | chr1_1:53613692-53613711 | Msa0028610:intron | 30.0% | |
| ! | ATTCTTTTAGCAAGTGTGAT+TGG | + | chr1_1:53613851-53613870 | Msa0028610:intron | 30.0% |
| ACAAGTTATAATAACGCATG+AGG | + | chr1_1:53614127-53614146 | Msa0028610:intron | 30.0% | |
| ! | TTTTTCTACCTGATGAGTTT+GGG | - | chr1_1:53614321-53614340 | None:intergenic | 30.0% |
| TAAAATAGGTTTGACTAAGC+CGG | - | chr1_1:53614474-53614493 | None:intergenic | 30.0% | |
| ! | TTACGAAGTATCTTGTAACA+AGG | - | chr1_1:53614650-53614669 | None:intergenic | 30.0% |
| TATGCCAATGAATATGTGTT+AGG | - | chr1_1:53614679-53614698 | None:intergenic | 30.0% | |
| ! | CTTGCTGTGTAAATATCATT+TGG | - | chr1_1:53614782-53614801 | None:intergenic | 30.0% |
| GAGAAATAAGTGACAGATTT+GGG | - | chr1_1:53614836-53614855 | None:intergenic | 30.0% | |
| ! | AAGTCAACAAATTTTCTCAG+CGG | + | chr1_1:53614974-53614993 | Msa0028610:intron | 30.0% |
| AATGAGTATTCTTATCTGGT+AGG | + | chr1_1:53615798-53615817 | Msa0028610:intron | 30.0% | |
| TGGTATTGTAATTGCCAAAT+TGG | + | chr1_1:53616140-53616159 | Msa0028610:intron | 30.0% | |
| !! | ATAAAAGAGTTTGAGTTGAG+AGG | - | chr1_1:53616302-53616321 | None:intergenic | 30.0% |
| GAATGAAATGAAACTAGACA+AGG | + | chr1_1:53616448-53616467 | Msa0028610:intron | 30.0% | |
| GGCAATAACTTTATTATTGG+TGG | + | chr1_1:53616477-53616496 | Msa0028610:intron | 30.0% | |
| TTTGTCAAATGCTCATCATA+TGG | + | chr1_1:53616511-53616530 | Msa0028610:intron | 30.0% | |
| GAAATAATTGTCAAATGAGG+AGG | - | chr1_1:53616544-53616563 | None:intergenic | 30.0% | |
| !! | AGATAATGCTCTAGAACTAT+TGG | - | chr1_1:53616635-53616654 | None:intergenic | 30.0% |
| TTATGACCTCATATAAACCT+TGG | - | chr1_1:53616763-53616782 | None:intergenic | 30.0% | |
| AAATCTTGTAGTAACAGCTA+TGG | - | chr1_1:53616921-53616940 | None:intergenic | 30.0% | |
| TTTCATCTCTTGAGATTACA+AGG | + | chr1_1:53617097-53617116 | Msa0028610:intron | 30.0% | |
| TTCAATAGGATCTTGAATGT+TGG | + | chr1_1:53617298-53617317 | Msa0028610:intron | 30.0% | |
| AACAAAGAGATGATAGCTAT+TGG | + | chr1_1:53617391-53617410 | Msa0028610:CDS | 30.0% | |
| ! | AAGCATTGCAGATACAATTA+TGG | - | chr1_1:53617696-53617715 | None:intergenic | 30.0% |
| ATAATTGTATCTGCAATGCT+TGG | + | chr1_1:53617695-53617714 | Msa0028610:CDS | 30.0% | |
| AGGAAACTGTTATTGTTCAT+AGG | + | chr1_1:53618195-53618214 | Msa0028610:intron | 30.0% | |
| TTATTGTTCATAGGATCTCA+AGG | + | chr1_1:53618204-53618223 | Msa0028610:intron | 30.0% | |
| GAAGACAGAATTAAAGATAC+AGG | + | chr1_1:53618242-53618261 | Msa0028610:CDS | 30.0% | |
| AGACAGAATTAAAGATACAG+GGG | + | chr1_1:53618244-53618263 | Msa0028610:CDS | 30.0% | |
| TATGTTATACTGGATATGAG+TGG | + | chr1_1:53618281-53618300 | Msa0028610:CDS | 30.0% | |
| GATTAATTGCCATATCTCAA+AGG | - | chr1_1:53618318-53618337 | None:intergenic | 30.0% | |
| GTTGGAAATATTGATACAAG+TGG | + | chr1_1:53618393-53618412 | Msa0028610:CDS | 30.0% | |
| CTATGGCTCAAAATATTTAG+TGG | - | chr1_1:53618865-53618884 | None:intergenic | 30.0% | |
| !! | CACTAAATATTTTGAGCCAT+AGG | + | chr1_1:53618863-53618882 | Msa0028610:three_prime_UTR | 30.0% |
| TTTCTTCCAACTTAGGAATT+AGG | - | chr1_1:53618931-53618950 | None:intergenic | 30.0% | |
| TAGGAAATTTCTTCCAACTT+AGG | - | chr1_1:53618938-53618957 | None:intergenic | 30.0% | |
| AAGAACTCAACAACTTATGT+AGG | - | chr1_1:53618957-53618976 | None:intergenic | 30.0% | |
| AAGGCCATTTATAATTCTCA+TGG | - | chr1_1:53619024-53619043 | None:intergenic | 30.0% | |
| CTGGAATTGGAGAAAATTAA+AGG | + | chr1_1:53619054-53619073 | Msa0028610:three_prime_UTR | 30.0% | |
| AGAAGCTAGTGAAAATGATG+AGG | - | chr1_1:53611749-53611768 | None:intergenic | 35.0% | |
| TGATTGAGAATGAGGAGATA+GGG | - | chr1_1:53611785-53611804 | None:intergenic | 35.0% | |
| TATGATGATTACCCATGTTC+AGG | + | chr1_1:53611975-53611994 | Msa0028610:CDS | 35.0% | |
| TGATTCTTAAACCTCCTCAA+TGG | - | chr1_1:53612104-53612123 | None:intergenic | 35.0% | |
| ! | TCAACCAGCTTCTAAAAAGT+TGG | + | chr1_1:53612121-53612140 | Msa0028610:CDS | 35.0% |
| ! | AAGAACTGAAAAGTGTAGCT+TGG | - | chr1_1:53612188-53612207 | None:intergenic | 35.0% |
| TTGAAATCTGATCTCATAGC+TGG | + | chr1_1:53612206-53612225 | Msa0028610:CDS | 35.0% | |
| AACTCACATAGTCCAAGAAT+TGG | - | chr1_1:53612296-53612315 | None:intergenic | 35.0% | |
| ATTCAACTATAGTAAGCCTC+AGG | + | chr1_1:53612545-53612564 | Msa0028610:intron | 35.0% | |
| TTCAACTATAGTAAGCCTCA+GGG | + | chr1_1:53612546-53612565 | Msa0028610:intron | 35.0% | |
| !! | ACAACTTTATTGATTCGTCC+CGG | + | chr1_1:53612768-53612787 | Msa0028610:intron | 35.0% |
| !!! | TCCTAAAATTTTTGGTGTCC+GGG | - | chr1_1:53612789-53612808 | None:intergenic | 35.0% |
| !!! | GTCCTAAAATTTTTGGTGTC+CGG | - | chr1_1:53612790-53612809 | None:intergenic | 35.0% |
| !! | AAAAGCTTAGGATTTTGGGT+AGG | - | chr1_1:53613308-53613327 | None:intergenic | 35.0% |
| ! | GGAGAAAAAGCTTAGGATTT+TGG | - | chr1_1:53613313-53613332 | None:intergenic | 35.0% |
| CACAAGACAACACAAAAAGA+AGG | - | chr1_1:53613586-53613605 | None:intergenic | 35.0% | |
| ATGTAATATGGGATGCGAAA+TGG | - | chr1_1:53613648-53613667 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGCCGGAAATCA+AGG | + | chr1_1:53613979-53613998 | Msa0028610:intron | 35.0% |
| ! | TGTTATTTGCCGGAAATCAA+GGG | + | chr1_1:53613980-53613999 | Msa0028610:intron | 35.0% |
| ! | GAGGTAATGGTGTGTAATTA+AGG | + | chr1_1:53614002-53614021 | Msa0028610:intron | 35.0% |
| GTGTTAGCAAATACACTATC+TGG | + | chr1_1:53614029-53614048 | Msa0028610:intron | 35.0% | |
| AGTTATAATAACGCATGAGG+TGG | + | chr1_1:53614130-53614149 | Msa0028610:intron | 35.0% | |
| GTTATAATAACGCATGAGGT+GGG | + | chr1_1:53614131-53614150 | Msa0028610:intron | 35.0% | |
| TTATAATAACGCATGAGGTG+GGG | + | chr1_1:53614132-53614151 | Msa0028610:intron | 35.0% | |
| CTGATGAGTTTGGGTAAAAA+TGG | - | chr1_1:53614312-53614331 | None:intergenic | 35.0% | |
| ! | CATTTTTACCCAAACTCATC+AGG | + | chr1_1:53614310-53614329 | Msa0028610:CDS | 35.0% |
| ! | GTTTTTCTACCTGATGAGTT+TGG | - | chr1_1:53614322-53614341 | None:intergenic | 35.0% |
| ! | TCAAACCTATTTCTCTAGAG+CGG | + | chr1_1:53614384-53614403 | Msa0028610:intron | 35.0% |
| ! | CTCTTCAACTTTGAGAAACT+TGG | - | chr1_1:53614419-53614438 | None:intergenic | 35.0% |
| TTATTTGGTTATTGCAGTGG+AGG | + | chr1_1:53614583-53614602 | Msa0028610:intron | 35.0% | |
| GGAGAAATAAGTGACAGATT+TGG | - | chr1_1:53614837-53614856 | None:intergenic | 35.0% | |
| ACTTGAAATTGGAACTGCAA+CGG | + | chr1_1:53615128-53615147 | Msa0028610:intron | 35.0% | |
| CATGATTAGATCATCCTTGA+AGG | - | chr1_1:53615643-53615662 | None:intergenic | 35.0% | |
| AAACACTGTTGAGTGCTATA+GGG | + | chr1_1:53615752-53615771 | Msa0028610:intron | 35.0% | |
| TCATTGAATATGGGTGGTAT+CGG | - | chr1_1:53615783-53615802 | None:intergenic | 35.0% | |
| GAATACTCATTGAATATGGG+TGG | - | chr1_1:53615789-53615808 | None:intergenic | 35.0% | |
| ACATGTAACATGTGTACTCA+TGG | - | chr1_1:53615855-53615874 | None:intergenic | 35.0% | |
| CTTATATACATGACATCGGA+AGG | + | chr1_1:53616067-53616086 | Msa0028610:intron | 35.0% | |
| ! | ATCTGAAACATGTGCCAATT+TGG | - | chr1_1:53616157-53616176 | None:intergenic | 35.0% |
| AATTGGCACATGTTTCAGAT+AGG | + | chr1_1:53616157-53616176 | Msa0028610:intron | 35.0% | |
| CAGATAGGAGAATTGAAGAA+AGG | + | chr1_1:53616172-53616191 | Msa0028610:intron | 35.0% | |
| AATACCAAATCTGTGAGTGA+TGG | - | chr1_1:53616208-53616227 | None:intergenic | 35.0% | |
| ! | TTGATAGCTGTGGTCATATA+TGG | - | chr1_1:53616238-53616257 | None:intergenic | 35.0% |
| !! | ATCAAAACTGGCCTTATTGT+TGG | + | chr1_1:53616253-53616272 | Msa0028610:CDS | 35.0% |
| GAGCTATAATGCCAACAATA+AGG | - | chr1_1:53616267-53616286 | None:intergenic | 35.0% | |
| AAATGCTCATCATATGGACA+TGG | + | chr1_1:53616517-53616536 | Msa0028610:intron | 35.0% | |
| !! | TGCTCTAGAACTATTGGTAA+AGG | - | chr1_1:53616629-53616648 | None:intergenic | 35.0% |
| ATCATTTAGCTGACACCTTA+TGG | + | chr1_1:53617130-53617149 | Msa0028610:intron | 35.0% | |
| ATTGGAACCATGAACATAGT+TGG | + | chr1_1:53617409-53617428 | Msa0028610:CDS | 35.0% | |
| GAAAGAACCAACTATGTTCA+TGG | - | chr1_1:53617419-53617438 | None:intergenic | 35.0% | |
| TGCAATTGACATCACAATGT+TGG | - | chr1_1:53617609-53617628 | None:intergenic | 35.0% | |
| ! | AGAGGAGTGTAATAGAACAA+AGG | - | chr1_1:53617659-53617678 | None:intergenic | 35.0% |
| TTTGTTCTATTACACTCCTC+TGG | + | chr1_1:53617658-53617677 | Msa0028610:CDS | 35.0% | |
| ATTTGTCAATCTTCCAGAGA+TGG | - | chr1_1:53617745-53617764 | None:intergenic | 35.0% | |
| TATATACCAGACTGAGAAGT+GGG | - | chr1_1:53617868-53617887 | None:intergenic | 35.0% | |
| TTATATACCAGACTGAGAAG+TGG | - | chr1_1:53617869-53617888 | None:intergenic | 35.0% | |
| ! | GGTTACTACTATTTGTTGCA+AGG | + | chr1_1:53617941-53617960 | Msa0028610:CDS | 35.0% |
| TTTCCCAAAACAAATGTCCT+TGG | - | chr1_1:53617967-53617986 | None:intergenic | 35.0% | |
| ! | CTTGCATTGGCAAAGTAAAT+TGG | - | chr1_1:53618078-53618097 | None:intergenic | 35.0% |
| ! | CTCTCTTAAATAGCTTGCAT+TGG | - | chr1_1:53618091-53618110 | None:intergenic | 35.0% |
| ATGCAAGCTATTTAAGAGAG+AGG | + | chr1_1:53618091-53618110 | Msa0028610:CDS | 35.0% | |
| CACATGCTAGAGAAAGAAAA+AGG | - | chr1_1:53618143-53618162 | None:intergenic | 35.0% | |
| ! | CTCTAGCATGTGAAATTTTC+TGG | + | chr1_1:53618151-53618170 | Msa0028610:intron | 35.0% |
| CTTGTGTGTCAAATTATTCC+AGG | - | chr1_1:53618177-53618196 | None:intergenic | 35.0% | |
| CTGGAATAATTTGACACACA+AGG | + | chr1_1:53618175-53618194 | Msa0028610:intron | 35.0% | |
| !! | AGTAATGAGCCTTTGAGATA+TGG | + | chr1_1:53618306-53618325 | Msa0028610:intron | 35.0% |
| ! | GTAATTTTATTGGCAGCTGT+TGG | + | chr1_1:53618375-53618394 | Msa0028610:intron | 35.0% |
| GCTTGAAGAGACTAAAAAGA+TGG | + | chr1_1:53618425-53618444 | Msa0028610:CDS | 35.0% | |
| CCAAAACAAGCTGTAATCAT+AGG | - | chr1_1:53618567-53618586 | None:intergenic | 35.0% | |
| !! | CCTATGATTACAGCTTGTTT+TGG | + | chr1_1:53618564-53618583 | Msa0028610:intron | 35.0% |
| ! | AATTTCCTCCTACATCCTTT+TGG | - | chr1_1:53618636-53618655 | None:intergenic | 35.0% |
| AAAAGGATGTAGGAGGAAAT+TGG | + | chr1_1:53618635-53618654 | Msa0028610:CDS | 35.0% | |
| AAATTGGATCTATCTGACAG+TGG | + | chr1_1:53618651-53618670 | Msa0028610:CDS | 35.0% | |
| TTGCATCCTAATTCCTAAGT+TGG | + | chr1_1:53618922-53618941 | Msa0028610:three_prime_UTR | 35.0% | |
| ! | CAATTCCAGAACCTTTTCAA+AGG | - | chr1_1:53619043-53619062 | None:intergenic | 35.0% |
| !! | CTTTGAAAAGGTTCTGGAAT+TGG | + | chr1_1:53619041-53619060 | Msa0028610:three_prime_UTR | 35.0% |
| TGTTGAGAGTTGAGACACTT+AGG | - | chr1_1:53611722-53611741 | None:intergenic | 40.0% | |
| GCTAGTGAAAATGATGAGGA+TGG | - | chr1_1:53611745-53611764 | None:intergenic | 40.0% | |
| GTGATTGAGAATGAGGAGAT+AGG | - | chr1_1:53611786-53611805 | None:intergenic | 40.0% | |
| GGTTGAAGTGATTGAGAATG+AGG | - | chr1_1:53611793-53611812 | None:intergenic | 40.0% | |
| AAACACCTTGCTTATGCATG+TGG | + | chr1_1:53611852-53611871 | Msa0028610:five_prime_UTR | 40.0% | |
| AAGTTCCACATGCATAAGCA+AGG | - | chr1_1:53611860-53611879 | None:intergenic | 40.0% | |
| CAACGTTCATTCCTGAACAT+GGG | - | chr1_1:53611989-53612008 | None:intergenic | 40.0% | |
| TCAACGTTCATTCCTGAACA+TGG | - | chr1_1:53611990-53612009 | None:intergenic | 40.0% | |
| TTCAAAAATGGTTGAGGAGG+TGG | - | chr1_1:53612038-53612057 | None:intergenic | 40.0% | |
| GACTTCAAAAATGGTTGAGG+AGG | - | chr1_1:53612041-53612060 | None:intergenic | 40.0% | |
| TCTTTCCAGATGATCCATTG+AGG | + | chr1_1:53612087-53612106 | Msa0028610:CDS | 40.0% | |
| !! | AGCACCAACTTTTTAGAAGC+TGG | - | chr1_1:53612128-53612147 | None:intergenic | 40.0% |
| !! | GCTTCTAAAAAGTTGGTGCT+TGG | + | chr1_1:53612128-53612147 | Msa0028610:CDS | 40.0% |
| ! | TTGGTGCCCATTCAAATATG+GGG | - | chr1_1:53612169-53612188 | None:intergenic | 40.0% |
| !! | CTTGGTGCCCATTCAAATAT+GGG | - | chr1_1:53612170-53612189 | None:intergenic | 40.0% |
| ATAGTCCAAGAATTGGAGGA+AGG | - | chr1_1:53612289-53612308 | None:intergenic | 40.0% | |
| TCACATAGTCCAAGAATTGG+AGG | - | chr1_1:53612293-53612312 | None:intergenic | 40.0% | |
| TGACTAGATGAATGGTGAAC+TGG | - | chr1_1:53612523-53612542 | None:intergenic | 40.0% | |
| TCAACTATAGTAAGCCTCAG+GGG | + | chr1_1:53612547-53612566 | Msa0028610:intron | 40.0% | |
| ! | TCCCGGACACCAAAAATTTT+AGG | + | chr1_1:53612785-53612804 | Msa0028610:intron | 40.0% |
| !! | ATGCAATGATGGGTAGTTCA+AGG | + | chr1_1:53613213-53613232 | Msa0028610:CDS | 40.0% |
| !! | TGCAATGATGGGTAGTTCAA+GGG | + | chr1_1:53613214-53613233 | Msa0028610:CDS | 40.0% |
| ATTAACCTCATTGGCCAACA+TGG | - | chr1_1:53613285-53613304 | None:intergenic | 40.0% | |
| TTGGGTAGGATTAACCTCAT+TGG | - | chr1_1:53613294-53613313 | None:intergenic | 40.0% | |
| AGAATGTAGCTGTGAAAGCA+AGG | - | chr1_1:53613337-53613356 | None:intergenic | 40.0% | |
| TTCACAGCTACATTCTTTGC+TGG | + | chr1_1:53613341-53613360 | Msa0028610:CDS | 40.0% | |
| ! | TGGACTTTTGCAAGCTTCAT+TGG | + | chr1_1:53613361-53613380 | Msa0028610:CDS | 40.0% |
| ! | GGACTTTTGCAAGCTTCATT+GGG | + | chr1_1:53613362-53613381 | Msa0028610:CDS | 40.0% |
| AAGCTTCATTGGGTCTCTTT+AGG | + | chr1_1:53613372-53613391 | Msa0028610:CDS | 40.0% | |
| GCAAGATATCTATCCTGGTT+AGG | - | chr1_1:53613563-53613582 | None:intergenic | 40.0% | |
| AATGGACGAATCTCATTGCA+TGG | - | chr1_1:53613630-53613649 | None:intergenic | 40.0% | |
| CAGCAGCTGAAATCAATTCT+AGG | + | chr1_1:53614239-53614258 | Msa0028610:CDS | 40.0% | |
| GGTAAAAATGGATCGCATGA+CGG | - | chr1_1:53614300-53614319 | None:intergenic | 40.0% | |
| !! | CAAACCTATTTCTCTAGAGC+GGG | + | chr1_1:53614385-53614404 | Msa0028610:intron | 40.0% |
| !! | AAACCTATTTCTCTAGAGCG+GGG | + | chr1_1:53614386-53614405 | Msa0028610:intron | 40.0% |
| TCCTTTCACAGTCATAGTCA+TGG | - | chr1_1:53614807-53614826 | None:intergenic | 40.0% | |
| CTTATCAAGAGTAGCAGCTA+GGG | - | chr1_1:53614946-53614965 | None:intergenic | 40.0% | |
| TCTTATCAAGAGTAGCAGCT+AGG | - | chr1_1:53614947-53614966 | None:intergenic | 40.0% | |
| !!! | CTACGTAGCTACTTTTGTCA+TGG | - | chr1_1:53615025-53615044 | None:intergenic | 40.0% |
| ! | AGAAACAACCGAGGTTCTTT+TGG | + | chr1_1:53615184-53615203 | Msa0028610:CDS | 40.0% |
| ! | GAAACAACCGAGGTTCTTTT+GGG | + | chr1_1:53615185-53615204 | Msa0028610:CDS | 40.0% |
| CTATAGCACTCAACAGTGTT+TGG | - | chr1_1:53615753-53615772 | None:intergenic | 40.0% | |
| CAAACACTGTTGAGTGCTAT+AGG | + | chr1_1:53615751-53615770 | Msa0028610:intron | 40.0% | |
| GTAACATGTGTACTCATGGT+GGG | - | chr1_1:53615851-53615870 | None:intergenic | 40.0% | |
| TGTAACATGTGTACTCATGG+TGG | - | chr1_1:53615852-53615871 | None:intergenic | 40.0% | |
| ATGACCACAGCTATCAAAAC+TGG | + | chr1_1:53616241-53616260 | Msa0028610:CDS | 40.0% | |
| TGTTGGCATTATAGCTCTTG+CGG | + | chr1_1:53616270-53616289 | Msa0028610:CDS | 40.0% | |
| !! | TGAAACTAGACAAGGCATTG+AGG | + | chr1_1:53616456-53616475 | Msa0028610:intron | 40.0% |
| TTGGTAAAGGTCATGTGATC+TGG | - | chr1_1:53616616-53616635 | None:intergenic | 40.0% | |
| ACCTTGCCAAGGTTTATATG+AGG | + | chr1_1:53616754-53616773 | Msa0028610:intron | 40.0% | |
| ACCTCATATAAACCTTGGCA+AGG | - | chr1_1:53616758-53616777 | None:intergenic | 40.0% | |
| !!! | GAATGTTGGTGCTGTTTTTC+AGG | + | chr1_1:53617312-53617331 | Msa0028610:intron | 40.0% |
| !! | TTTTCAGGAAGGAATAGCTG+TGG | + | chr1_1:53617327-53617346 | Msa0028610:intron | 40.0% |
| TTTCAGGAAGGAATAGCTGT+GGG | + | chr1_1:53617328-53617347 | Msa0028610:intron | 40.0% | |
| GATGATGTTTACCAGTTGTG+AGG | - | chr1_1:53617453-53617472 | None:intergenic | 40.0% | |
| GCATCCAGCATTATAGTTCA+CGG | - | chr1_1:53617573-53617592 | None:intergenic | 40.0% | |
| GTCTGCATTAGCGCATATAT+GGG | + | chr1_1:53617776-53617795 | Msa0028610:CDS | 40.0% | |
| ! | GTCTTTGGCAGTGTTGAAAT+TGG | + | chr1_1:53617803-53617822 | Msa0028610:CDS | 40.0% |
| AGGTTGCAATATCAGTGCTT+CGG | + | chr1_1:53617920-53617939 | Msa0028610:intron | 40.0% | |
| ! | TACTATTTGTTGCAAGGCCA+AGG | + | chr1_1:53617947-53617966 | Msa0028610:CDS | 40.0% |
| ! | AAGGCCAAGGACATTTGTTT+TGG | + | chr1_1:53617960-53617979 | Msa0028610:CDS | 40.0% |
| !! | AGGCCAAGGACATTTGTTTT+GGG | + | chr1_1:53617961-53617980 | Msa0028610:CDS | 40.0% |
| TTGTTCATAGGATCTCAAGG+TGG | + | chr1_1:53618207-53618226 | Msa0028610:intron | 40.0% | |
| CAACAAATCCAGCTTCCAAA+AGG | + | chr1_1:53618618-53618637 | Msa0028610:CDS | 40.0% | |
| TCCCAAAAGAGATGAATCAG+AGG | + | chr1_1:53618714-53618733 | Msa0028610:CDS | 40.0% | |
| ! | CCCTCTGATTCATCTCTTTT+GGG | - | chr1_1:53618718-53618737 | None:intergenic | 40.0% |
| CCCAAAAGAGATGAATCAGA+GGG | + | chr1_1:53618715-53618734 | Msa0028610:CDS | 40.0% | |
| ! | ACCCTCTGATTCATCTCTTT+TGG | - | chr1_1:53618719-53618738 | None:intergenic | 40.0% |
| AAAGAGATGAATCAGAGGGT+TGG | + | chr1_1:53618719-53618738 | Msa0028610:CDS | 40.0% | |
| ! | AATGGCCTTTGAAAAGGTTC+TGG | + | chr1_1:53619035-53619054 | Msa0028610:three_prime_UTR | 40.0% |
| ! | AACGTTGATGAGAGTGTGCA+TGG | + | chr1_1:53612002-53612021 | Msa0028610:CDS | 45.0% |
| TTCCAGATGATCCATTGAGG+AGG | + | chr1_1:53612090-53612109 | Msa0028610:CDS | 45.0% | |
| AACCTCCTCAATGGATCATC+TGG | - | chr1_1:53612095-53612114 | None:intergenic | 45.0% | |
| !! | GCTTGGTGCCCATTCAAATA+TGG | - | chr1_1:53612171-53612190 | None:intergenic | 45.0% |
| TGGCATCACTATTGCTAGCT+TGG | + | chr1_1:53612226-53612245 | Msa0028610:CDS | 45.0% | |
| TTGGCATAGCTAATGCCTTG+AGG | - | chr1_1:53612257-53612276 | None:intergenic | 45.0% | |
| TCCAAGAATTGGAGGAAGGT+TGG | - | chr1_1:53612285-53612304 | None:intergenic | 45.0% | |
| GATGGGTAGTTCAAGGGATT+TGG | + | chr1_1:53613220-53613239 | Msa0028610:CDS | 45.0% | |
| AGTTCAAGGGATTTGGCAGT+TGG | + | chr1_1:53613227-53613246 | Msa0028610:CDS | 45.0% | |
| GCAGTTGGATCTCTTCTGAT+GGG | + | chr1_1:53613257-53613276 | Msa0028610:CDS | 45.0% | |
| !! | TCTTCTGATGGGTTCCATGT+TGG | + | chr1_1:53613268-53613287 | Msa0028610:CDS | 45.0% |
| GCAAGGTGGAGAAAAAGCTT+AGG | - | chr1_1:53613320-53613339 | None:intergenic | 45.0% | |
| ATGTAGCTGTGAAAGCAAGG+TGG | - | chr1_1:53613334-53613353 | None:intergenic | 45.0% | |
| GAAGGGCAAGATATCTATCC+TGG | - | chr1_1:53613568-53613587 | None:intergenic | 45.0% | |
| TATTTGCCGGAAATCAAGGG+AGG | + | chr1_1:53613983-53614002 | Msa0028610:intron | 45.0% | |
| CCATTACCTCCCTTGATTTC+CGG | - | chr1_1:53613992-53614011 | None:intergenic | 45.0% | |
| TGTCACATGCAGCCATAGTA+GGG | + | chr1_1:53614183-53614202 | Msa0028610:CDS | 45.0% | |
| GGATACGATATCAGCAGCAT+GGG | - | chr1_1:53614279-53614298 | None:intergenic | 45.0% | |
| CTCTCAATCATGCGATCTCT+TGG | + | chr1_1:53614444-53614463 | Msa0028610:intron | 45.0% | |
| TTTGGTTATTGCAGTGGAGG+TGG | + | chr1_1:53614586-53614605 | Msa0028610:intron | 45.0% | |
| TTGGTTATTGCAGTGGAGGT+GGG | + | chr1_1:53614587-53614606 | Msa0028610:intron | 45.0% | |
| GCCATGACTATGACTGTGAA+AGG | + | chr1_1:53614803-53614822 | Msa0028610:intron | 45.0% | |
| TGAAATTGGAACTGCAACGG+TGG | + | chr1_1:53615131-53615150 | Msa0028610:intron | 45.0% | |
| CAGCACACTTCCCAGTATAA+CGG | - | chr1_1:53615235-53615254 | None:intergenic | 45.0% | |
| !! | TGAATATGGGTGGTATCGGT+TGG | - | chr1_1:53615779-53615798 | None:intergenic | 45.0% |
| TCCACCATCACTCACAGATT+TGG | + | chr1_1:53616201-53616220 | Msa0028610:CDS | 45.0% | |
| ACCAAATCTGTGAGTGATGG+TGG | - | chr1_1:53616205-53616224 | None:intergenic | 45.0% | |
| !! | AAGGCCAGTTTTGATAGCTG+TGG | - | chr1_1:53616248-53616267 | None:intergenic | 45.0% |
| !!! | GTTGGTGCTGTTTTTCAGGA+AGG | + | chr1_1:53617316-53617335 | Msa0028610:intron | 45.0% |
| GTTCTATTACACTCCTCTGG+TGG | + | chr1_1:53617661-53617680 | Msa0028610:CDS | 45.0% | |
| GTCAATCTTCCAGAGATGGA+TGG | - | chr1_1:53617741-53617760 | None:intergenic | 45.0% | |
| CGTCTGCATTAGCGCATATA+TGG | + | chr1_1:53617775-53617794 | Msa0028610:CDS | 45.0% | |
| ! | GCATATATGGGCGTTGTCTT+TGG | + | chr1_1:53617788-53617807 | Msa0028610:CDS | 45.0% |
| CCGGAAACACGATTTGCATT+CGG | - | chr1_1:53618030-53618049 | None:intergenic | 45.0% | |
| CCGAATGCAAATCGTGTTTC+CGG | + | chr1_1:53618027-53618046 | Msa0028610:CDS | 45.0% | |
| !! | GCATGTGAAATTTTCTGGCC+TGG | + | chr1_1:53618156-53618175 | Msa0028610:intron | 45.0% |
| !!! | CAGCTTGTTTTGGTCAATCC+TGG | + | chr1_1:53618574-53618593 | Msa0028610:intron | 45.0% |
| TTTGGTCAATCCTGGAAGTG+AGG | + | chr1_1:53618582-53618601 | Msa0028610:CDS | 45.0% | |
| TTCTTCATCACCTCACTTCC+AGG | - | chr1_1:53618595-53618614 | None:intergenic | 45.0% | |
| TCCAGCTTCCAAAAGGATGT+AGG | + | chr1_1:53618625-53618644 | Msa0028610:CDS | 45.0% | |
| !! | TCCTACATCCTTTTGGAAGC+TGG | - | chr1_1:53618629-53618648 | None:intergenic | 45.0% |
| AGCTTCCAAAAGGATGTAGG+AGG | + | chr1_1:53618628-53618647 | Msa0028610:CDS | 45.0% | |
| !! | TTATTAAAAATTACTAAAAA+TGG | + | chr1_1:53613016-53613035 | Msa0028610:intron | 5.0% |
| !! | ATAAATAAACAAAAATTTAT+TGG | - | chr1_1:53614567-53614586 | None:intergenic | 5.0% |
| !!! | TAAATTTTTGTTTATTTATT+TGG | + | chr1_1:53614568-53614587 | Msa0028610:intron | 5.0% |
| !!! | CTAATATATATATATTTTTT+TGG | + | chr1_1:53616120-53616139 | Msa0028610:intron | 5.0% |
| ! | TGATGAGAGTGTGCATGGTG+TGG | + | chr1_1:53612007-53612026 | Msa0028610:CDS | 50.0% |
| ! | GCTAGCTTGGCTATTCCTCA+AGG | + | chr1_1:53612239-53612258 | Msa0028610:CDS | 50.0% |
| TGGAGGAAGGTTGGCAAGTT+TGG | - | chr1_1:53612276-53612295 | None:intergenic | 50.0% | |
| GCCAACCTTCCTCCAATTCT+TGG | + | chr1_1:53612281-53612300 | Msa0028610:CDS | 50.0% | |
| ACTATAGTAAGCCTCAGGGG+TGG | + | chr1_1:53612550-53612569 | Msa0028610:intron | 50.0% | |
| !!! | TTTTGGTGCCCCTACAAACG+CGG | - | chr1_1:53612600-53612619 | None:intergenic | 50.0% |
| GGATTTGGCAGTTGGAACTG+TGG | + | chr1_1:53613235-53613254 | Msa0028610:CDS | 50.0% | |
| GGCAGTTGGATCTCTTCTGA+TGG | + | chr1_1:53613256-53613275 | Msa0028610:CDS | 50.0% | |
| CCGGAAATCAAGGGAGGTAA+TGG | + | chr1_1:53613989-53614008 | Msa0028610:intron | 50.0% | |
| GTGCAGGTTAGGGTTTATCG+TGG | + | chr1_1:53614154-53614173 | Msa0028610:intron | 50.0% | |
| CTACTATGGCTGCATGTGAC+AGG | - | chr1_1:53614184-53614203 | None:intergenic | 50.0% | |
| CTGTCACATGCAGCCATAGT+AGG | + | chr1_1:53614182-53614201 | Msa0028610:CDS | 50.0% | |
| TGCAGCCATAGTAGGGTTCA+TGG | + | chr1_1:53614190-53614209 | Msa0028610:CDS | 50.0% | |
| GCAGCCATAGTAGGGTTCAT+GGG | + | chr1_1:53614191-53614210 | Msa0028610:CDS | 50.0% | |
| TCCTCCCATGAACCCTACTA+TGG | - | chr1_1:53614198-53614217 | None:intergenic | 50.0% | |
| CGGATACGATATCAGCAGCA+TGG | - | chr1_1:53614280-53614299 | None:intergenic | 50.0% | |
| !! | AGACCCCGCTCTAGAGAAAT+AGG | - | chr1_1:53614392-53614411 | None:intergenic | 50.0% |
| CATGCGATCTCTTGGAAGAC+CGG | + | chr1_1:53614452-53614471 | Msa0028610:intron | 50.0% | |
| CAAGAGTAGCAGCTAGGGTA+GGG | - | chr1_1:53614941-53614960 | None:intergenic | 50.0% | |
| TCAAGAGTAGCAGCTAGGGT+AGG | - | chr1_1:53614942-53614961 | None:intergenic | 50.0% | |
| TGCAGAGCAAGAAACAACCG+AGG | + | chr1_1:53615175-53615194 | Msa0028610:intron | 50.0% | |
| GCTGACACCCAAAAGAACCT+CGG | - | chr1_1:53615195-53615214 | None:intergenic | 50.0% | |
| ! | CGTTATACTGGGAAGTGTGC+TGG | + | chr1_1:53615233-53615252 | Msa0028610:CDS | 50.0% |
| !! | GCAAGCTTGTTACCTTGCCA+AGG | + | chr1_1:53616743-53616762 | Msa0028610:intron | 50.0% |
| ACCTCTTGCTACCTCACAAC+TGG | + | chr1_1:53617439-53617458 | Msa0028610:CDS | 50.0% | |
| ACCAGTTGTGAGGTAGCAAG+AGG | - | chr1_1:53617443-53617462 | None:intergenic | 50.0% | |
| !! | TTCAGGGCCATTTTCGCGTT+CGG | + | chr1_1:53617547-53617566 | Msa0028610:intron | 50.0% |
| TCGGCCGTGAACTATAATGC+TGG | + | chr1_1:53617566-53617585 | Msa0028610:CDS | 50.0% | |
| ATGAAGCAGCCATCCATCTC+TGG | + | chr1_1:53617729-53617748 | Msa0028610:CDS | 50.0% | |
| TGTTCTCCCACTTCTCAGTC+TGG | + | chr1_1:53617859-53617878 | Msa0028610:intron | 50.0% | |
| CTCAAGGTGGATCGATGAAG+AGG | + | chr1_1:53618220-53618239 | Msa0028610:CDS | 50.0% | |
| GCAGTTGGAACTGTGGCAGT+TGG | + | chr1_1:53613242-53613261 | Msa0028610:CDS | 55.0% | |
| GGGTTCCATGTTGGCCAATG+AGG | + | chr1_1:53613277-53613296 | Msa0028610:CDS | 55.0% | |
| ATGAGGTGGGGTGCAGGTTA+GGG | + | chr1_1:53614144-53614163 | Msa0028610:intron | 55.0% | |
| GCCATAGTAGGGTTCATGGG+AGG | + | chr1_1:53614194-53614213 | Msa0028610:CDS | 55.0% | |
| !! | AGGTGGGAAAGCGCTGTGTT+GGG | + | chr1_1:53614603-53614622 | Msa0028610:CDS | 55.0% |
| !! | CCCAGTATAACGGACGCCAA+CGG | - | chr1_1:53615225-53615244 | None:intergenic | 55.0% |
| CCGTTGGCGTCCGTTATACT+GGG | + | chr1_1:53615222-53615241 | Msa0028610:CDS | 55.0% | |
| CACTTGAACACCGTGGTGCT+CGG | - | chr1_1:53615274-53615293 | None:intergenic | 55.0% | |
| TGCTCACCACTTGAACACCG+TGG | - | chr1_1:53615281-53615300 | None:intergenic | 55.0% | |
| TTCACGGCCGAACGCGAAAA+TGG | - | chr1_1:53617557-53617576 | None:intergenic | 55.0% | |
| ATGGCTGCTAGTACCACCAG+AGG | - | chr1_1:53617677-53617696 | None:intergenic | 55.0% | |
| TAGTAAGCCTCAGGGGTGGC+CGG | + | chr1_1:53612554-53612573 | Msa0028610:intron | 60.0% | |
| TAACGCATGAGGTGGGGTGC+AGG | + | chr1_1:53614138-53614157 | Msa0028610:intron | 60.0% | |
| CATGAGGTGGGGTGCAGGTT+AGG | + | chr1_1:53614143-53614162 | Msa0028610:intron | 60.0% | |
| CATGGGAGGAGCAGCTACAG+TGG | + | chr1_1:53614208-53614227 | Msa0028610:CDS | 60.0% | |
| !! | GAGGTGGGAAAGCGCTGTGT+TGG | + | chr1_1:53614602-53614621 | Msa0028610:CDS | 60.0% |
| GGTGTCAGCAATGACGCCGT+TGG | + | chr1_1:53615206-53615225 | Msa0028610:CDS | 60.0% | |
| GCCGTTGGCGTCCGTTATAC+TGG | + | chr1_1:53615221-53615240 | Msa0028610:CDS | 60.0% | |
| TTCACTCACGCCGAGCACCA+CGG | + | chr1_1:53615261-53615280 | Msa0028610:CDS | 60.0% | |
| CGAGCACCACGGTGTTCAAG+TGG | + | chr1_1:53615272-53615291 | Msa0028610:CDS | 60.0% | |
| CCCTACAAACGCGGTGCCCT+GGG | - | chr1_1:53612591-53612610 | None:intergenic | 65.0% | |
| !! | CCCAGGGCACCGCGTTTGTA+GGG | + | chr1_1:53612588-53612607 | Msa0028610:intron | 65.0% |
| !! | CCAGGGCACCGCGTTTGTAG+GGG | + | chr1_1:53612589-53612608 | Msa0028610:intron | 65.0% |
| TAAGCCTCAGGGGTGGCCGG+AGG | + | chr1_1:53612557-53612576 | Msa0028610:intron | 70.0% | |
| AAGCCTCAGGGGTGGCCGGA+GGG | + | chr1_1:53612558-53612577 | Msa0028610:intron | 70.0% | |
| !! | GCCCAGGGCACCGCGTTTGT+AGG | + | chr1_1:53612587-53612606 | Msa0028610:intron | 70.0% |
| CCCCTACAAACGCGGTGCCC+TGG | - | chr1_1:53612592-53612611 | None:intergenic | 70.0% | |
| AGCCTCAGGGGTGGCCGGAG+GGG | + | chr1_1:53612559-53612578 | Msa0028610:intron | 75.0% | |
| ! | CTCAGGGGTGGCCGGAGGGG+CGG | + | chr1_1:53612562-53612581 | Msa0028610:intron | 80.0% |
| ! | CGCCCCTCCGGCCACCCCTG+AGG | - | chr1_1:53612564-53612583 | None:intergenic | 85.0% |
| ! | GCCGGAGGGGCGGCAGCCCA+GGG | + | chr1_1:53612572-53612591 | Msa0028610:intron | 85.0% |
| ! | GCCCTGGGCTGCCGCCCCTC+CGG | - | chr1_1:53612576-53612595 | None:intergenic | 85.0% |
| ! | GGCCGGAGGGGCGGCAGCCC+AGG | + | chr1_1:53612571-53612590 | Msa0028610:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53611707 | 53619104 | 53611707 | ID=Msa0028610;Name=Msa0028610 |
| chr1_1 | mRNA | 53611707 | 53619104 | 53611707 | ID=Msa0028610-mRNA-1;Parent=Msa0028610;Name=Msa0028610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=253|1|1|1|1|1|12|351|656 |
| chr1_1 | exon | 53611707 | 53612308 | 53611707 | ID=Msa0028610-mRNA-1:exon:15812;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53613186 | 53613393 | 53613186 | ID=Msa0028610-mRNA-1:exon:15813;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53614160 | 53614331 | 53614160 | ID=Msa0028610-mRNA-1:exon:15814;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53614600 | 53614665 | 53614600 | ID=Msa0028610-mRNA-1:exon:15815;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53615180 | 53615293 | 53615180 | ID=Msa0028610-mRNA-1:exon:15816;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53616175 | 53616291 | 53616175 | ID=Msa0028610-mRNA-1:exon:15817;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53617334 | 53617460 | 53617334 | ID=Msa0028610-mRNA-1:exon:15818;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53617552 | 53617838 | 53617552 | ID=Msa0028610-mRNA-1:exon:15819;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53617922 | 53618112 | 53617922 | ID=Msa0028610-mRNA-1:exon:15820;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53618217 | 53618302 | 53618217 | ID=Msa0028610-mRNA-1:exon:15821;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53618391 | 53618467 | 53618391 | ID=Msa0028610-mRNA-1:exon:15822;Parent=Msa0028610-mRNA-1 |
| chr1_1 | exon | 53618577 | 53619104 | 53618577 | ID=Msa0028610-mRNA-1:exon:15823;Parent=Msa0028610-mRNA-1 |
| chr1_1 | five_prime_UTR | 53611707 | 53611959 | 53611707 | ID=Msa0028610-mRNA-1:five_prime_utr;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53611960 | 53612308 | 53611960 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53613186 | 53613393 | 53613186 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53614160 | 53614331 | 53614160 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53614600 | 53614665 | 53614600 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53615180 | 53615293 | 53615180 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53616175 | 53616291 | 53616175 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53617334 | 53617460 | 53617334 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53617552 | 53617838 | 53617552 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53617922 | 53618112 | 53617922 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53618217 | 53618302 | 53618217 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53618391 | 53618467 | 53618391 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | CDS | 53618577 | 53618753 | 53618577 | ID=Msa0028610-mRNA-1:cds;Parent=Msa0028610-mRNA-1 |
| chr1_1 | three_prime_UTR | 53618754 | 53619104 | 53618754 | ID=Msa0028610-mRNA-1:three_prime_utr;Parent=Msa0028610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
