Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204190 | XP_003609265.1 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 1.51e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204190 | sp|Q02921|NO93_SOYBN | 84.000 | 100 | 16 | 0 | 8 | 107 | 4 | 103 | 7.01e-45 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa1204190 | -0.800206 | 1.606449e-48 | -8.615850e-47 |
| Msa0036580 | Msa1204190 | 0.812987 | 3.214084e-51 | -8.615850e-47 |
| Msa0089080 | Msa1204190 | 0.802627 | 5.128619e-49 | -8.615850e-47 |
| Msa0617370 | Msa1204190 | -0.806448 | 8.185272e-50 | -8.615850e-47 |
| Msa0620640 | Msa1204190 | -0.809325 | 2.000949e-50 | -8.615850e-47 |
| Msa0639030 | Msa1204190 | -0.820313 | 7.328011e-53 | -8.615850e-47 |
| Msa0640380 | Msa1204190 | -0.816262 | 6.053327e-52 | -8.615850e-47 |
| Msa0656270 | Msa1204190 | -0.808450 | 3.079158e-50 | -8.615850e-47 |
| Msa0660880 | Msa1204190 | 0.818976 | 1.479441e-52 | -8.615850e-47 |
| Msa0678820 | Msa1204190 | -0.800626 | 1.319435e-48 | -8.615850e-47 |
| Msa0697140 | Msa1204190 | -0.815995 | 6.945981e-52 | -8.615850e-47 |
| Msa0697600 | Msa1204190 | -0.821734 | 3.449164e-53 | -8.615850e-47 |
| Msa0700070 | Msa1204190 | -0.802159 | 6.404419e-49 | -8.615850e-47 |
| Msa0716740 | Msa1204190 | 0.815047 | 1.129353e-51 | -8.615850e-47 |
| Msa0722930 | Msa1204190 | -0.826885 | 2.122483e-54 | -8.615850e-47 |
| Msa0723140 | Msa1204190 | -0.819008 | 1.455251e-52 | -8.615850e-47 |
| Msa0774810 | Msa1204190 | 0.807620 | 4.625381e-50 | -8.615850e-47 |
| Msa0799290 | Msa1204190 | 0.821576 | 3.752068e-53 | -8.615850e-47 |
| Msa0819670 | Msa1204190 | -0.801077 | 1.067298e-48 | -8.615850e-47 |
| Msa0837510 | Msa1204190 | 0.820104 | 8.183035e-53 | -8.615850e-47 |
| Msa0176620 | Msa1204190 | 0.800778 | 1.228501e-48 | -8.615850e-47 |
| Msa0198440 | Msa1204190 | -0.807310 | 5.381173e-50 | -8.615850e-47 |
| Msa0379820 | Msa1204190 | -0.805285 | 1.437489e-49 | -8.615850e-47 |
| Msa0379850 | Msa1204190 | -0.807380 | 5.199058e-50 | -8.615850e-47 |
| Msa0411000 | Msa1204190 | -0.815887 | 7.342470e-52 | -8.615850e-47 |
| Msa0414070 | Msa1204190 | -0.802369 | 5.795862e-49 | -8.615850e-47 |
| Msa0419620 | Msa1204190 | 0.820828 | 5.581269e-53 | -8.615850e-47 |
| Msa0429170 | Msa1204190 | -0.814562 | 1.446431e-51 | -8.615850e-47 |
| Msa0454940 | Msa1204190 | -0.820989 | 5.124334e-53 | -8.615850e-47 |
| Msa0455230 | Msa1204190 | -0.802691 | 4.976136e-49 | -8.615850e-47 |
| Msa0988500 | Msa1204190 | -0.838097 | 3.520359e-57 | -8.615850e-47 |
| Msa1006750 | Msa1204190 | 0.830856 | 2.320574e-55 | -8.615850e-47 |
| Msa1011320 | Msa1204190 | 0.868484 | 6.311811e-66 | -8.615850e-47 |
| Msa1011350 | Msa1204190 | 0.875767 | 2.376497e-68 | -8.615850e-47 |
| Msa1080790 | Msa1204190 | -0.819761 | 9.800883e-53 | -8.615850e-47 |
| Msa1095800 | Msa1204190 | 0.851917 | 6.494590e-61 | -8.615850e-47 |
| Msa0278670 | Msa1204190 | -0.811714 | 6.097134e-51 | -8.615850e-47 |
| Msa0318070 | Msa1204190 | -0.800534 | 1.377882e-48 | -8.615850e-47 |
| Msa0327860 | Msa1204190 | -0.808880 | 2.492179e-50 | -8.615850e-47 |
| Msa0362430 | Msa1204190 | -0.810253 | 1.263518e-50 | -8.615850e-47 |
| Msa0363460 | Msa1204190 | -0.803954 | 2.724145e-49 | -8.615850e-47 |
| Msa1118930 | Msa1204190 | -0.818431 | 1.967345e-52 | -8.615850e-47 |
| Msa1141250 | Msa1204190 | 0.813981 | 1.943418e-51 | -8.615850e-47 |
| Msa1142850 | Msa1204190 | 0.885769 | 6.112560e-72 | -8.615850e-47 |
| Msa1142860 | Msa1204190 | 0.864433 | 1.220311e-64 | -8.615850e-47 |
| Msa1204160 | Msa1204190 | 0.985546 | 6.642336e-164 | -8.615850e-47 |
| Msa1204190 | Msa1207480 | 0.808458 | 3.067448e-50 | -8.615850e-47 |
| Msa1204190 | Msa1211390 | -0.817084 | 3.961636e-52 | -8.615850e-47 |
| Msa1204190 | Msa1282210 | -0.806967 | 6.359027e-50 | -8.615850e-47 |
| Msa1204190 | Msa1369070 | 0.801280 | 9.701239e-49 | -8.615850e-47 |
| Msa1204190 | Msa1371580 | -0.802195 | 6.296086e-49 | -8.615850e-47 |
| Msa1204190 | Msa1379710 | -0.801597 | 8.351802e-49 | -8.615850e-47 |
| Msa1204190 | Msa1386520 | -0.808279 | 3.347823e-50 | -8.615850e-47 |
| Msa1204190 | Msa1395690 | 0.804361 | 2.241119e-49 | -8.615850e-47 |
| Msa0502910 | Msa1204190 | -0.804307 | 2.299821e-49 | -8.615850e-47 |
| Msa0505660 | Msa1204190 | -0.810076 | 1.379839e-50 | -8.615850e-47 |
| Msa0511720 | Msa1204190 | 0.824204 | 9.159458e-54 | -8.615850e-47 |
| Msa0527250 | Msa1204190 | -0.802046 | 6.755573e-49 | -8.615850e-47 |
| Msa0543900 | Msa1204190 | -0.801052 | 1.080089e-48 | -8.615850e-47 |
| Msa0843280 | Msa1204190 | -0.812625 | 3.859558e-51 | -8.615850e-47 |
| Msa0951720 | Msa1204190 | -0.831981 | 1.226129e-55 | -8.615850e-47 |
| Msa0961420 | Msa1204190 | 0.810848 | 9.400453e-51 | -8.615850e-47 |
| Msa0965520 | Msa1204190 | -0.807123 | 5.893374e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204190 | MtrunA17_Chr4g0063331 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 1.39e-72 | 211 |
| Msa1204190 | MtrunA17_Chr1g0146471 | 60.759 | 79 | 31 | 0 | 21 | 99 | 26 | 104 | 5.81e-29 | 101 |
| Msa1204190 | MtrunA17_Chr3g0140601 | 53.086 | 81 | 38 | 0 | 21 | 101 | 27 | 107 | 1.23e-25 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204190 | AT5G25940.1 | 67.347 | 49 | 16 | 0 | 52 | 100 | 55 | 103 | 1.01e-17 | 72.8 |
Find 55 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAACCAGCTTGGCTTATC+TGG | 0.217498 | 8_1:+59706199 | Msa1204190:CDS |
| CACCAACTCACCTTATAAAT+AGG | 0.248401 | 8_1:+59706023 | Msa1204190:five_prime_UTR |
| AACTGGCTAAATATTAATTA+AGG | 0.254751 | 8_1:-59706899 | None:intergenic |
| TAAACAGGTGAATAGATAAT+TGG | 0.268753 | 8_1:-59706081 | None:intergenic |
| GAGCTTGAGCAGTGGGATTC+AGG | 0.269132 | 8_1:-59706615 | None:intergenic |
| ACCACTCTTCTCCCTTTCTT+AGG | 0.271157 | 8_1:+59705969 | Msa1204190:five_prime_UTR |
| ATGTTGGTTGCCTATTTATA+AGG | 0.325220 | 8_1:-59706033 | None:intergenic |
| TGAAAGAAGTGTTTGTAAAC+AGG | 0.339570 | 8_1:-59706096 | None:intergenic |
| TGCATTGGAGGGTCGGTTGA+TGG | 0.374033 | 8_1:-59706812 | None:intergenic |
| CTAAGGCAGGTGGAGTTTGA+TGG | 0.396613 | 8_1:-59705945 | None:intergenic |
| ATTCATATAATATGATTGAT+TGG | 0.402052 | 8_1:-59707001 | None:intergenic |
| TTCAATTGAATCTTTGAAGA+TGG | 0.404082 | 8_1:+59706142 | Msa1204190:exon |
| TGCATTTGTAATTCATGCAT+TGG | 0.411064 | 8_1:-59706827 | None:intergenic |
| TGAATTACAAATGCATAACT+TGG | 0.437148 | 8_1:+59706835 | Msa1204190:exon |
| CTAGTGTTAGGATGCTACCT+TGG | 0.442749 | 8_1:+59706581 | Msa1204190:CDS |
| CAAGCTCTCATAATTTCTAC+AGG | 0.456647 | 8_1:+59706631 | Msa1204190:CDS |
| ATTAGCAGCAACATTTCTCT+TGG | 0.469394 | 8_1:-59706165 | None:intergenic |
| TGATGACTAGTACATGAAAC+TGG | 0.469750 | 8_1:-59706916 | None:intergenic |
| GCTTGGCCATGGCCAACCTC+TGG | 0.472159 | 8_1:-59706223 | None:intergenic |
| GAGAAGAGTGGTACTAAGGC+AGG | 0.474800 | 8_1:-59705958 | None:intergenic |
| ACATGCAGCTGGCTAGTGTT+AGG | 0.477537 | 8_1:+59706569 | Msa1204190:intron |
| AAGGGAGAAGAGTGGTACTA+AGG | 0.481424 | 8_1:-59705962 | None:intergenic |
| ATGTACTTATAATTAAAGAA+TGG | 0.482494 | 8_1:+59706942 | Msa1204190:three_prime_UTR |
| GGCTTATCTGGACCAGAGGT+TGG | 0.484520 | 8_1:+59706211 | Msa1204190:CDS |
| TCCTCTTGAGAGAACCAGCT+TGG | 0.495079 | 8_1:+59706190 | Msa1204190:CDS |
| ATGAGAACAGCGCTTGGCCA+TGG | 0.500574 | 8_1:-59706234 | None:intergenic |
| AGTAGCTGACAAGACTGTAT+TGG | 0.503109 | 8_1:+59706771 | Msa1204190:CDS |
| GGGTGTAATGGCTGGAGCTA+AGG | 0.508105 | 8_1:+59706352 | Msa1204190:CDS |
| TGCCTATTTATAAGGTGAGT+TGG | 0.511178 | 8_1:-59706025 | None:intergenic |
| ATAACTTGGGATCGTGGACT+CGG | 0.512892 | 8_1:+59706849 | Msa1204190:three_prime_UTR |
| TTCAGGTTTGCTCTTGCCCA+AGG | 0.514820 | 8_1:-59706598 | None:intergenic |
| TAGTGTTAGGATGCTACCTT+GGG | 0.518544 | 8_1:+59706582 | Msa1204190:CDS |
| ATGGCCAAGCGCTGTTCTCA+TGG | 0.525880 | 8_1:+59706236 | Msa1204190:CDS |
| TAATTCATGCATTGGAGGGT+CGG | 0.526783 | 8_1:-59706819 | None:intergenic |
| ATTATGAGAGCTTGAGCAGT+GGG | 0.542769 | 8_1:-59706622 | None:intergenic |
| GAATGAAGAGTAGTTGATGT+TGG | 0.547673 | 8_1:-59706049 | None:intergenic |
| CTGGTCCAGATAAGCCAAGC+TGG | 0.549243 | 8_1:-59706204 | None:intergenic |
| ATTTGTAATTCATGCATTGG+AGG | 0.558334 | 8_1:-59706824 | None:intergenic |
| AGGAGTAGTTACAGTTGGAA+TGG | 0.559635 | 8_1:-59706402 | None:intergenic |
| TAAACAGAGGGTGTAATGGC+TGG | 0.563650 | 8_1:+59706344 | Msa1204190:intron |
| TTTGTAATTCATGCATTGGA+GGG | 0.572592 | 8_1:-59706823 | None:intergenic |
| AAATGCATAACTTGGGATCG+TGG | 0.576904 | 8_1:+59706843 | Msa1204190:three_prime_UTR |
| AAAACAACTGTCTGAGACGG+TGG | 0.580606 | 8_1:+59705909 | None:intergenic |
| TGTGTAAACAGAGGGTGTAA+TGG | 0.582073 | 8_1:+59706340 | Msa1204190:intron |
| GCCAAGCTGGTTCTCTCAAG+AGG | 0.593616 | 8_1:-59706191 | None:intergenic |
| GAATTACAAATGCATAACTT+GGG | 0.594223 | 8_1:+59706836 | Msa1204190:exon |
| AGTTACAGTTGGAATGGCAG+TGG | 0.597023 | 8_1:-59706396 | None:intergenic |
| AAGAGTGGTACTAAGGCAGG+TGG | 0.612552 | 8_1:-59705955 | None:intergenic |
| TCTGGACCAGAGGTTGGCCA+TGG | 0.615026 | 8_1:+59706217 | Msa1204190:CDS |
| ATTACCATGAGAACAGCGCT+TGG | 0.632062 | 8_1:-59706240 | None:intergenic |
| GGACTCGGATGCACTGCACT+CGG | 0.638155 | 8_1:+59706864 | Msa1204190:three_prime_UTR |
| GTGAAAACAACTGTCTGAGA+CGG | 0.643345 | 8_1:+59705906 | None:intergenic |
| GCTTGGCTTATCTGGACCAG+AGG | 0.644191 | 8_1:+59706207 | Msa1204190:CDS |
| AATTATGAGAGCTTGAGCAG+TGG | 0.660731 | 8_1:-59706623 | None:intergenic |
| ACCTAAGAAAGGGAGAAGAG+TGG | 0.696384 | 8_1:-59705970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAATACAATAACAA+AGG | - | chr8_1:59706310-59706329 | None:intergenic | 15.0% |
| !! | ATGTACTTATAATTAAAGAA+TGG | + | chr8_1:59706942-59706961 | Msa1204190:three_prime_UTR | 15.0% |
| !! | ATTCATATAATATGATTGAT+TGG | - | chr8_1:59707004-59707023 | None:intergenic | 15.0% |
| !! | AAAACTAAATACAATAACAA+AGG | - | chr8_1:59706310-59706329 | None:intergenic | 15.0% |
| !! | ATGTACTTATAATTAAAGAA+TGG | + | chr8_1:59706942-59706961 | Msa1204190:three_prime_UTR | 15.0% |
| !! | ATTCATATAATATGATTGAT+TGG | - | chr8_1:59707004-59707023 | None:intergenic | 15.0% |
| !!! | ATTATTTTGAACCTAAGAAA+GGG | - | chr8_1:59705983-59706002 | None:intergenic | 20.0% |
| !!! | AATTATTTTGAACCTAAGAA+AGG | - | chr8_1:59705984-59706003 | None:intergenic | 20.0% |
| !! | TCAATGTATAATGTAATCTT+TGG | + | chr8_1:59706281-59706300 | Msa1204190:intron | 20.0% |
| !! | CAGAACTATATCAAAATTAA+TGG | - | chr8_1:59706460-59706479 | None:intergenic | 20.0% |
| !! | TTTCTTAGGATATTTAAAAG+TGG | - | chr8_1:59706507-59706526 | None:intergenic | 20.0% |
| !! | AACTGGCTAAATATTAATTA+AGG | - | chr8_1:59706902-59706921 | None:intergenic | 20.0% |
| !!! | ATTATTTTGAACCTAAGAAA+GGG | - | chr8_1:59705983-59706002 | None:intergenic | 20.0% |
| !!! | AATTATTTTGAACCTAAGAA+AGG | - | chr8_1:59705984-59706003 | None:intergenic | 20.0% |
| !! | TCAATGTATAATGTAATCTT+TGG | + | chr8_1:59706281-59706300 | Msa1204190:intron | 20.0% |
| !! | CAGAACTATATCAAAATTAA+TGG | - | chr8_1:59706460-59706479 | None:intergenic | 20.0% |
| !! | TTTCTTAGGATATTTAAAAG+TGG | - | chr8_1:59706507-59706526 | None:intergenic | 20.0% |
| !! | AACTGGCTAAATATTAATTA+AGG | - | chr8_1:59706902-59706921 | None:intergenic | 20.0% |
| ! | TAAACAGGTGAATAGATAAT+TGG | - | chr8_1:59706084-59706103 | None:intergenic | 25.0% |
| !! | TTCAATTGAATCTTTGAAGA+TGG | + | chr8_1:59706142-59706161 | Msa1204190:exon | 25.0% |
| ! | TGAAGCAAAGAAAATTGAAT+AGG | - | chr8_1:59706432-59706451 | None:intergenic | 25.0% |
| !! | ATCCTAAGAAAGATACTTTT+TGG | + | chr8_1:59706516-59706535 | Msa1204190:intron | 25.0% |
| !!! | TACCAAAAAGTATCTTTCTT+AGG | - | chr8_1:59706521-59706540 | None:intergenic | 25.0% |
| ! | TGAATTACAAATGCATAACT+TGG | + | chr8_1:59706835-59706854 | Msa1204190:exon | 25.0% |
| ! | GAATTACAAATGCATAACTT+GGG | + | chr8_1:59706836-59706855 | Msa1204190:exon | 25.0% |
| ! | AAATTAGTAACTTCTCTTTC+TGG | + | chr8_1:59707026-59707045 | Msa1204190:three_prime_UTR | 25.0% |
| ! | TAAACAGGTGAATAGATAAT+TGG | - | chr8_1:59706084-59706103 | None:intergenic | 25.0% |
| !! | TTCAATTGAATCTTTGAAGA+TGG | + | chr8_1:59706142-59706161 | Msa1204190:exon | 25.0% |
| ! | TGAAGCAAAGAAAATTGAAT+AGG | - | chr8_1:59706432-59706451 | None:intergenic | 25.0% |
| !! | ATCCTAAGAAAGATACTTTT+TGG | + | chr8_1:59706516-59706535 | Msa1204190:intron | 25.0% |
| !!! | TACCAAAAAGTATCTTTCTT+AGG | - | chr8_1:59706521-59706540 | None:intergenic | 25.0% |
| ! | TGAATTACAAATGCATAACT+TGG | + | chr8_1:59706835-59706854 | Msa1204190:exon | 25.0% |
| ! | GAATTACAAATGCATAACTT+GGG | + | chr8_1:59706836-59706855 | Msa1204190:exon | 25.0% |
| ! | ATGTTGGTTGCCTATTTATA+AGG | - | chr8_1:59706036-59706055 | None:intergenic | 30.0% |
| !! | TGAAAGAAGTGTTTGTAAAC+AGG | - | chr8_1:59706099-59706118 | None:intergenic | 30.0% |
| AAGAAAATTGAATAGGTGGA+AGG | - | chr8_1:59706425-59706444 | None:intergenic | 30.0% | |
| AGCAAAGAAAATTGAATAGG+TGG | - | chr8_1:59706429-59706448 | None:intergenic | 30.0% | |
| CCACTACAAACAAAATATGA+GGG | - | chr8_1:59706732-59706751 | None:intergenic | 30.0% | |
| TTTGTAATTCATGCATTGGA+GGG | - | chr8_1:59706826-59706845 | None:intergenic | 30.0% | |
| ATTTGTAATTCATGCATTGG+AGG | - | chr8_1:59706827-59706846 | None:intergenic | 30.0% | |
| TGCATTTGTAATTCATGCAT+TGG | - | chr8_1:59706830-59706849 | None:intergenic | 30.0% | |
| ! | ATGTTGGTTGCCTATTTATA+AGG | - | chr8_1:59706036-59706055 | None:intergenic | 30.0% |
| !! | TGAAAGAAGTGTTTGTAAAC+AGG | - | chr8_1:59706099-59706118 | None:intergenic | 30.0% |
| AAGAAAATTGAATAGGTGGA+AGG | - | chr8_1:59706425-59706444 | None:intergenic | 30.0% | |
| AGCAAAGAAAATTGAATAGG+TGG | - | chr8_1:59706429-59706448 | None:intergenic | 30.0% | |
| CCACTACAAACAAAATATGA+GGG | - | chr8_1:59706732-59706751 | None:intergenic | 30.0% | |
| TTTGTAATTCATGCATTGGA+GGG | - | chr8_1:59706826-59706845 | None:intergenic | 30.0% | |
| ATTTGTAATTCATGCATTGG+AGG | - | chr8_1:59706827-59706846 | None:intergenic | 30.0% | |
| TGCATTTGTAATTCATGCAT+TGG | - | chr8_1:59706830-59706849 | None:intergenic | 30.0% | |
| CACCAACTCACCTTATAAAT+AGG | + | chr8_1:59706023-59706042 | Msa1204190:five_prime_UTR | 35.0% | |
| TGCCTATTTATAAGGTGAGT+TGG | - | chr8_1:59706028-59706047 | None:intergenic | 35.0% | |
| ! | GAATGAAGAGTAGTTGATGT+TGG | - | chr8_1:59706052-59706071 | None:intergenic | 35.0% |
| ATTAGCAGCAACATTTCTCT+TGG | - | chr8_1:59706168-59706187 | None:intergenic | 35.0% | |
| CAAGCTCTCATAATTTCTAC+AGG | + | chr8_1:59706631-59706650 | Msa1204190:CDS | 35.0% | |
| ! | TTGATCAGTGTTGAGCAATA+AGG | - | chr8_1:59706670-59706689 | None:intergenic | 35.0% |
| TGTATCAAGCAATGATTGTG+AGG | - | chr8_1:59706700-59706719 | None:intergenic | 35.0% | |
| !! | CCCTCATATTTTGTTTGTAG+TGG | + | chr8_1:59706729-59706748 | Msa1204190:intron | 35.0% |
| GCCACTACAAACAAAATATG+AGG | - | chr8_1:59706733-59706752 | None:intergenic | 35.0% | |
| !! | CATATTTTGTTTGTAGTGGC+TGG | + | chr8_1:59706733-59706752 | Msa1204190:intron | 35.0% |
| TGATGACTAGTACATGAAAC+TGG | - | chr8_1:59706919-59706938 | None:intergenic | 35.0% | |
| CACCAACTCACCTTATAAAT+AGG | + | chr8_1:59706023-59706042 | Msa1204190:five_prime_UTR | 35.0% | |
| TGCCTATTTATAAGGTGAGT+TGG | - | chr8_1:59706028-59706047 | None:intergenic | 35.0% | |
| ! | GAATGAAGAGTAGTTGATGT+TGG | - | chr8_1:59706052-59706071 | None:intergenic | 35.0% |
| ATTAGCAGCAACATTTCTCT+TGG | - | chr8_1:59706168-59706187 | None:intergenic | 35.0% | |
| CAAGCTCTCATAATTTCTAC+AGG | + | chr8_1:59706631-59706650 | Msa1204190:CDS | 35.0% | |
| ! | TTGATCAGTGTTGAGCAATA+AGG | - | chr8_1:59706670-59706689 | None:intergenic | 35.0% |
| TGTATCAAGCAATGATTGTG+AGG | - | chr8_1:59706700-59706719 | None:intergenic | 35.0% | |
| !! | CCCTCATATTTTGTTTGTAG+TGG | + | chr8_1:59706729-59706748 | Msa1204190:intron | 35.0% |
| GCCACTACAAACAAAATATG+AGG | - | chr8_1:59706733-59706752 | None:intergenic | 35.0% | |
| !! | CATATTTTGTTTGTAGTGGC+TGG | + | chr8_1:59706733-59706752 | Msa1204190:intron | 35.0% |
| TGATGACTAGTACATGAAAC+TGG | - | chr8_1:59706919-59706938 | None:intergenic | 35.0% | |
| TCCATTCCTTGTGTAAACAG+AGG | + | chr8_1:59706331-59706350 | Msa1204190:intron | 40.0% | |
| CCATTCCTTGTGTAAACAGA+GGG | + | chr8_1:59706332-59706351 | Msa1204190:intron | 40.0% | |
| TTACACCCTCTGTTTACACA+AGG | - | chr8_1:59706340-59706359 | None:intergenic | 40.0% | |
| ! | TGTGTAAACAGAGGGTGTAA+TGG | + | chr8_1:59706340-59706359 | Msa1204190:intron | 40.0% |
| AGGAGTAGTTACAGTTGGAA+TGG | - | chr8_1:59706405-59706424 | None:intergenic | 40.0% | |
| ATATATGCTTGACATGCAGC+TGG | + | chr8_1:59706558-59706577 | Msa1204190:intron | 40.0% | |
| TAGTGTTAGGATGCTACCTT+GGG | + | chr8_1:59706582-59706601 | Msa1204190:CDS | 40.0% | |
| ATTATGAGAGCTTGAGCAGT+GGG | - | chr8_1:59706625-59706644 | None:intergenic | 40.0% | |
| AATTATGAGAGCTTGAGCAG+TGG | - | chr8_1:59706626-59706645 | None:intergenic | 40.0% | |
| ! | ATCAGTGTTGAGCAATAAGG+AGG | - | chr8_1:59706667-59706686 | None:intergenic | 40.0% |
| AGTAGCTGACAAGACTGTAT+TGG | + | chr8_1:59706771-59706790 | Msa1204190:CDS | 40.0% | |
| TAATTCATGCATTGGAGGGT+CGG | - | chr8_1:59706822-59706841 | None:intergenic | 40.0% | |
| AAATGCATAACTTGGGATCG+TGG | + | chr8_1:59706843-59706862 | Msa1204190:three_prime_UTR | 40.0% | |
| TCCATTCCTTGTGTAAACAG+AGG | + | chr8_1:59706331-59706350 | Msa1204190:intron | 40.0% | |
| CCATTCCTTGTGTAAACAGA+GGG | + | chr8_1:59706332-59706351 | Msa1204190:intron | 40.0% | |
| TTACACCCTCTGTTTACACA+AGG | - | chr8_1:59706340-59706359 | None:intergenic | 40.0% | |
| ! | TGTGTAAACAGAGGGTGTAA+TGG | + | chr8_1:59706340-59706359 | Msa1204190:intron | 40.0% |
| AGGAGTAGTTACAGTTGGAA+TGG | - | chr8_1:59706405-59706424 | None:intergenic | 40.0% | |
| ATATATGCTTGACATGCAGC+TGG | + | chr8_1:59706558-59706577 | Msa1204190:intron | 40.0% | |
| TAGTGTTAGGATGCTACCTT+GGG | + | chr8_1:59706582-59706601 | Msa1204190:CDS | 40.0% | |
| ATTATGAGAGCTTGAGCAGT+GGG | - | chr8_1:59706625-59706644 | None:intergenic | 40.0% | |
| AATTATGAGAGCTTGAGCAG+TGG | - | chr8_1:59706626-59706645 | None:intergenic | 40.0% | |
| ! | ATCAGTGTTGAGCAATAAGG+AGG | - | chr8_1:59706667-59706686 | None:intergenic | 40.0% |
| AGTAGCTGACAAGACTGTAT+TGG | + | chr8_1:59706771-59706790 | Msa1204190:CDS | 40.0% | |
| TAATTCATGCATTGGAGGGT+CGG | - | chr8_1:59706822-59706841 | None:intergenic | 40.0% | |
| AAATGCATAACTTGGGATCG+TGG | + | chr8_1:59706843-59706862 | Msa1204190:three_prime_UTR | 40.0% | |
| AAGGGAGAAGAGTGGTACTA+AGG | - | chr8_1:59705965-59705984 | None:intergenic | 45.0% | |
| ACCACTCTTCTCCCTTTCTT+AGG | + | chr8_1:59705969-59705988 | Msa1204190:five_prime_UTR | 45.0% | |
| ACCTAAGAAAGGGAGAAGAG+TGG | - | chr8_1:59705973-59705992 | None:intergenic | 45.0% | |
| ATTACCATGAGAACAGCGCT+TGG | - | chr8_1:59706243-59706262 | None:intergenic | 45.0% | |
| CCCTCTGTTTACACAAGGAA+TGG | - | chr8_1:59706335-59706354 | None:intergenic | 45.0% | |
| ! | TAAACAGAGGGTGTAATGGC+TGG | + | chr8_1:59706344-59706363 | Msa1204190:intron | 45.0% |
| AGTTACAGTTGGAATGGCAG+TGG | - | chr8_1:59706399-59706418 | None:intergenic | 45.0% | |
| GTGGAAGGAGTAGTTACAGT+TGG | - | chr8_1:59706410-59706429 | None:intergenic | 45.0% | |
| CTAGTGTTAGGATGCTACCT+TGG | + | chr8_1:59706581-59706600 | Msa1204190:CDS | 45.0% | |
| ATAACTTGGGATCGTGGACT+CGG | + | chr8_1:59706849-59706868 | Msa1204190:three_prime_UTR | 45.0% | |
| AAGGGAGAAGAGTGGTACTA+AGG | - | chr8_1:59705965-59705984 | None:intergenic | 45.0% | |
| ACCACTCTTCTCCCTTTCTT+AGG | + | chr8_1:59705969-59705988 | Msa1204190:five_prime_UTR | 45.0% | |
| ACCTAAGAAAGGGAGAAGAG+TGG | - | chr8_1:59705973-59705992 | None:intergenic | 45.0% | |
| ATTACCATGAGAACAGCGCT+TGG | - | chr8_1:59706243-59706262 | None:intergenic | 45.0% | |
| CCCTCTGTTTACACAAGGAA+TGG | - | chr8_1:59706335-59706354 | None:intergenic | 45.0% | |
| ! | TAAACAGAGGGTGTAATGGC+TGG | + | chr8_1:59706344-59706363 | Msa1204190:intron | 45.0% |
| AGTTACAGTTGGAATGGCAG+TGG | - | chr8_1:59706399-59706418 | None:intergenic | 45.0% | |
| GTGGAAGGAGTAGTTACAGT+TGG | - | chr8_1:59706410-59706429 | None:intergenic | 45.0% | |
| CTAGTGTTAGGATGCTACCT+TGG | + | chr8_1:59706581-59706600 | Msa1204190:CDS | 45.0% | |
| ATAACTTGGGATCGTGGACT+CGG | + | chr8_1:59706849-59706868 | Msa1204190:three_prime_UTR | 45.0% | |
| CTAAGGCAGGTGGAGTTTGA+TGG | - | chr8_1:59705948-59705967 | None:intergenic | 50.0% | |
| AAGAGTGGTACTAAGGCAGG+TGG | - | chr8_1:59705958-59705977 | None:intergenic | 50.0% | |
| GAGAAGAGTGGTACTAAGGC+AGG | - | chr8_1:59705961-59705980 | None:intergenic | 50.0% | |
| TCCTCTTGAGAGAACCAGCT+TGG | + | chr8_1:59706190-59706209 | Msa1204190:CDS | 50.0% | |
| GAGAACCAGCTTGGCTTATC+TGG | + | chr8_1:59706199-59706218 | Msa1204190:CDS | 50.0% | |
| ACATGCAGCTGGCTAGTGTT+AGG | + | chr8_1:59706569-59706588 | Msa1204190:intron | 50.0% | |
| ! | TTCAGGTTTGCTCTTGCCCA+AGG | - | chr8_1:59706601-59706620 | None:intergenic | 50.0% |
| CTAAGGCAGGTGGAGTTTGA+TGG | - | chr8_1:59705948-59705967 | None:intergenic | 50.0% | |
| AAGAGTGGTACTAAGGCAGG+TGG | - | chr8_1:59705958-59705977 | None:intergenic | 50.0% | |
| GAGAAGAGTGGTACTAAGGC+AGG | - | chr8_1:59705961-59705980 | None:intergenic | 50.0% | |
| TCCTCTTGAGAGAACCAGCT+TGG | + | chr8_1:59706190-59706209 | Msa1204190:CDS | 50.0% | |
| GAGAACCAGCTTGGCTTATC+TGG | + | chr8_1:59706199-59706218 | Msa1204190:CDS | 50.0% | |
| ACATGCAGCTGGCTAGTGTT+AGG | + | chr8_1:59706569-59706588 | Msa1204190:intron | 50.0% | |
| ! | TTCAGGTTTGCTCTTGCCCA+AGG | - | chr8_1:59706601-59706620 | None:intergenic | 50.0% |
| ! | GCCAAGCTGGTTCTCTCAAG+AGG | - | chr8_1:59706194-59706213 | None:intergenic | 55.0% |
| CTGGTCCAGATAAGCCAAGC+TGG | - | chr8_1:59706207-59706226 | None:intergenic | 55.0% | |
| GCTTGGCTTATCTGGACCAG+AGG | + | chr8_1:59706207-59706226 | Msa1204190:CDS | 55.0% | |
| GGCTTATCTGGACCAGAGGT+TGG | + | chr8_1:59706211-59706230 | Msa1204190:CDS | 55.0% | |
| ATGAGAACAGCGCTTGGCCA+TGG | - | chr8_1:59706237-59706256 | None:intergenic | 55.0% | |
| ! | ATGGCCAAGCGCTGTTCTCA+TGG | + | chr8_1:59706236-59706255 | Msa1204190:CDS | 55.0% |
| GGGTGTAATGGCTGGAGCTA+AGG | + | chr8_1:59706352-59706371 | Msa1204190:CDS | 55.0% | |
| GAGCTTGAGCAGTGGGATTC+AGG | - | chr8_1:59706618-59706637 | None:intergenic | 55.0% | |
| TGCATTGGAGGGTCGGTTGA+TGG | - | chr8_1:59706815-59706834 | None:intergenic | 55.0% | |
| ! | GCCAAGCTGGTTCTCTCAAG+AGG | - | chr8_1:59706194-59706213 | None:intergenic | 55.0% |
| CTGGTCCAGATAAGCCAAGC+TGG | - | chr8_1:59706207-59706226 | None:intergenic | 55.0% | |
| GCTTGGCTTATCTGGACCAG+AGG | + | chr8_1:59706207-59706226 | Msa1204190:CDS | 55.0% | |
| GGCTTATCTGGACCAGAGGT+TGG | + | chr8_1:59706211-59706230 | Msa1204190:CDS | 55.0% | |
| ATGAGAACAGCGCTTGGCCA+TGG | - | chr8_1:59706237-59706256 | None:intergenic | 55.0% | |
| ! | ATGGCCAAGCGCTGTTCTCA+TGG | + | chr8_1:59706236-59706255 | Msa1204190:CDS | 55.0% |
| GGGTGTAATGGCTGGAGCTA+AGG | + | chr8_1:59706352-59706371 | Msa1204190:CDS | 55.0% | |
| GAGCTTGAGCAGTGGGATTC+AGG | - | chr8_1:59706618-59706637 | None:intergenic | 55.0% | |
| TGCATTGGAGGGTCGGTTGA+TGG | - | chr8_1:59706815-59706834 | None:intergenic | 55.0% | |
| ! | TCTGGACCAGAGGTTGGCCA+TGG | + | chr8_1:59706217-59706236 | Msa1204190:CDS | 60.0% |
| GGACTCGGATGCACTGCACT+CGG | + | chr8_1:59706864-59706883 | Msa1204190:three_prime_UTR | 60.0% | |
| ! | TCTGGACCAGAGGTTGGCCA+TGG | + | chr8_1:59706217-59706236 | Msa1204190:CDS | 60.0% |
| GGACTCGGATGCACTGCACT+CGG | + | chr8_1:59706864-59706883 | Msa1204190:three_prime_UTR | 60.0% | |
| GCTTGGCCATGGCCAACCTC+TGG | - | chr8_1:59706226-59706245 | None:intergenic | 65.0% | |
| GCTTGGCCATGGCCAACCTC+TGG | - | chr8_1:59706226-59706245 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 59705918 | 59707047 | 59705918 | ID=Msa1204190;Name=Msa1204190 |
| chr8_1 | mRNA | 59705918 | 59707047 | 59705918 | ID=Msa1204190-mRNA-1;Parent=Msa1204190;Name=Msa1204190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=243|1|1|1|1|1|4|210|107 |
| chr8_1 | exon | 59705918 | 59706257 | 59705918 | ID=Msa1204190-mRNA-1:exon:19291;Parent=Msa1204190-mRNA-1 |
| chr8_1 | exon | 59706351 | 59706412 | 59706351 | ID=Msa1204190-mRNA-1:exon:19292;Parent=Msa1204190-mRNA-1 |
| chr8_1 | exon | 59706577 | 59706652 | 59706577 | ID=Msa1204190-mRNA-1:exon:19293;Parent=Msa1204190-mRNA-1 |
| chr8_1 | exon | 59706749 | 59707047 | 59706749 | ID=Msa1204190-mRNA-1:exon:19294;Parent=Msa1204190-mRNA-1 |
| chr8_1 | five_prime_UTR | 59705918 | 59706160 | 59705918 | ID=Msa1204190-mRNA-1:five_prime_utr;Parent=Msa1204190-mRNA-1 |
| chr8_1 | CDS | 59706161 | 59706257 | 59706161 | ID=Msa1204190-mRNA-1:cds;Parent=Msa1204190-mRNA-1 |
| chr8_1 | CDS | 59706351 | 59706412 | 59706351 | ID=Msa1204190-mRNA-1:cds;Parent=Msa1204190-mRNA-1 |
| chr8_1 | CDS | 59706577 | 59706652 | 59706577 | ID=Msa1204190-mRNA-1:cds;Parent=Msa1204190-mRNA-1 |
| chr8_1 | CDS | 59706749 | 59706837 | 59706749 | ID=Msa1204190-mRNA-1:cds;Parent=Msa1204190-mRNA-1 |
| chr8_1 | three_prime_UTR | 59706838 | 59707047 | 59706838 | ID=Msa1204190-mRNA-1:three_prime_utr;Parent=Msa1204190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
