Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369930 | XP_013461821.1 | 96.875 | 384 | 10 | 1 | 1 | 384 | 1 | 382 | 0.0 | 765 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369930 | sp|O48651|SQE1_PANGI | 75.000 | 384 | 92 | 1 | 1 | 384 | 23 | 402 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369930 | Q8GSM8 | 96.875 | 384 | 10 | 1 | 1 | 384 | 1 | 382 | 0.0 | 765 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0476080 | Msa1369930 | 0.833040 | 6.700981e-56 | -8.615850e-47 |
| Msa0519770 | Msa1369930 | 0.866104 | 3.637348e-65 | -8.615850e-47 |
| Msa0519850 | Msa1369930 | 0.813523 | 2.451380e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369930 | MtrunA17_Chr3g0135201 | 96.875 | 384 | 10 | 1 | 1 | 384 | 1 | 382 | 0.0 | 765 |
| Msa1369930 | MtrunA17_Chr1g0152061 | 79.328 | 387 | 76 | 1 | 2 | 384 | 1 | 387 | 0.0 | 617 |
| Msa1369930 | MtrunA17_Chr4g0049291 | 77.105 | 380 | 82 | 3 | 8 | 383 | 9 | 387 | 0.0 | 569 |
| Msa1369930 | MtrunA17_Chr6g0463601 | 63.529 | 170 | 59 | 2 | 10 | 176 | 12 | 181 | 1.81e-70 | 219 |
| Msa1369930 | MtrunA17_Chr6g0463751 | 74.747 | 99 | 25 | 0 | 78 | 176 | 38 | 136 | 1.97e-49 | 163 |
| Msa1369930 | MtrunA17_Chr6g0463781 | 80.488 | 82 | 16 | 0 | 303 | 384 | 21 | 102 | 2.23e-40 | 142 |
| Msa1369930 | MtrunA17_Chr6g0463771 | 73.563 | 87 | 22 | 1 | 229 | 314 | 11 | 97 | 3.40e-37 | 131 |
| Msa1369930 | MtrunA17_Chr6g0463591 | 80.263 | 76 | 14 | 1 | 229 | 303 | 5 | 80 | 4.80e-36 | 126 |
| Msa1369930 | MtrunA17_Chr6g0463581 | 83.871 | 62 | 10 | 0 | 323 | 384 | 1 | 62 | 4.75e-28 | 109 |
| Msa1369930 | MtrunA17_Chr6g0463761 | 74.138 | 58 | 15 | 0 | 173 | 230 | 24 | 81 | 8.68e-24 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369930 | AT1G58440.1 | 75.676 | 370 | 86 | 2 | 17 | 384 | 21 | 388 | 0.0 | 578 |
| Msa1369930 | AT2G22830.1 | 72.267 | 375 | 95 | 2 | 17 | 384 | 78 | 450 | 0.0 | 562 |
| Msa1369930 | AT4G37760.1 | 73.670 | 376 | 93 | 3 | 12 | 384 | 10 | 382 | 0.0 | 540 |
| Msa1369930 | AT5G24150.1 | 54.192 | 334 | 150 | 2 | 54 | 384 | 43 | 376 | 6.62e-126 | 372 |
| Msa1369930 | AT5G24150.2 | 54.192 | 334 | 150 | 2 | 54 | 384 | 43 | 376 | 8.45e-126 | 371 |
| Msa1369930 | AT5G24160.2 | 47.733 | 375 | 181 | 4 | 9 | 379 | 9 | 372 | 9.47e-124 | 363 |
| Msa1369930 | AT5G24160.1 | 47.733 | 375 | 181 | 4 | 9 | 379 | 9 | 372 | 7.92e-122 | 362 |
| Msa1369930 | AT5G24140.1 | 46.997 | 383 | 187 | 6 | 1 | 378 | 1 | 372 | 8.16e-115 | 344 |
| Msa1369930 | AT5G24160.3 | 49.831 | 295 | 144 | 3 | 89 | 379 | 1 | 295 | 1.76e-100 | 305 |
| Msa1369930 | AT5G24155.3 | 66.667 | 63 | 21 | 0 | 58 | 120 | 49 | 111 | 2.64e-22 | 91.7 |
| Msa1369930 | AT5G24155.2 | 71.930 | 57 | 16 | 0 | 58 | 114 | 49 | 105 | 2.94e-22 | 91.3 |
| Msa1369930 | AT5G24155.1 | 71.930 | 57 | 16 | 0 | 58 | 114 | 49 | 105 | 3.87e-22 | 91.3 |
Find 84 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAATTTCTGTACTACTTA+TGG | 0.178656 | tig0018915:+473 | Msa1369930:intergenic |
| TGGTCGACCCCTACGGTTTC+GGG | 0.237985 | tig0018915:-3913 | Msa1369930:CDS |
| GAAGAGAATGGTACAATTAA+AGG | 0.280394 | tig0018915:-1262 | Msa1369930:CDS |
| CGCTGTCTGGTTGATGTTCC+TGG | 0.295098 | tig0018915:-453 | Msa1369930:CDS |
| CGAATTTCTGTACTACTTAT+GGG | 0.320042 | tig0018915:+474 | Msa1369930:intergenic |
| ATTTCACCATTGGAAATAGA+TGG | 0.333959 | tig0018915:+420 | Msa1369930:intergenic |
| ATCTATTTCCAATGGTGAAA+TGG | 0.351927 | tig0018915:-418 | Msa1369930:CDS |
| ATGGTCGACCCCTACGGTTT+CGG | 0.353513 | tig0018915:-3914 | Msa1369930:CDS |
| ATTGATGCTCAGCAAGTGTT+TGG | 0.355900 | tig0018915:-2079 | Msa1369930:CDS |
| ATGATATCAACGTCGCCGTT+TGG | 0.370779 | tig0018915:+3758 | Msa1369930:intergenic |
| AAATCATGGTCACGTCATAC+TGG | 0.391765 | tig0018915:-523 | Msa1369930:CDS |
| TTGATTGAGCTGGGACTTGA+AGG | 0.413598 | tig0018915:-2270 | Msa1369930:intron |
| AGTGTAAGCGAGAGCGGAGC+CGG | 0.434336 | tig0018915:+3715 | Msa1369930:intergenic |
| AATGAACCAGACCGAATTGT+TGG | 0.440764 | tig0018915:-2324 | Msa1369930:CDS |
| TTGATGCTCAGCAAGTGTTT+GGG | 0.446101 | tig0018915:-2078 | Msa1369930:CDS |
| TCCGCTCTCGCTTACACTCT+CGG | 0.457292 | tig0018915:-3710 | Msa1369930:CDS |
| ATACTTTGCCATTTCACCAT+TGG | 0.458675 | tig0018915:+410 | Msa1369930:intergenic |
| TAGTACAGAAATTCGCTGTC+TGG | 0.460268 | tig0018915:-466 | Msa1369930:CDS |
| CTGGAAGAAGCTTTCACAAT+GGG | 0.462566 | tig0018915:-1985 | Msa1369930:CDS |
| CCGTTCTCTTTGTAATCCTA+AGG | 0.466319 | tig0018915:-1152 | Msa1369930:intron |
| ATTGTCGGTGCTGGTGTCGC+CGG | 0.469469 | tig0018915:-3734 | Msa1369930:CDS |
| TATGTTATGTAGTGTACGGT+TGG | 0.482947 | tig0018915:-1311 | Msa1369930:intron |
| GGTTGATGTTCCTGGTCAGA+AGG | 0.486415 | tig0018915:-445 | Msa1369930:CDS |
| CACGAGACTCTCTTATCCCT+TGG | 0.490385 | tig0018915:-2029 | Msa1369930:CDS |
| TGTACCATTCTCTTCGAGTA+GGG | 0.493101 | tig0018915:+1270 | Msa1369930:intergenic |
| AGCGGTGGTGGTTGTTGCAT+CGG | 0.495786 | tig0018915:+3823 | Msa1369930:intergenic |
| CTATCTCAAATTGATTGAGC+TGG | 0.497355 | tig0018915:-2280 | Msa1369930:CDS |
| GTAGCAACTCGCCAACAATT+CGG | 0.499442 | tig0018915:+2313 | Msa1369930:intergenic |
| AACTCGCCAACAATTCGGTC+TGG | 0.508143 | tig0018915:+2318 | Msa1369930:intergenic |
| CCTCTTACCATTGTTTGTGA+TGG | 0.509647 | tig0018915:-1193 | Msa1369930:CDS |
| CTTATGGGATAGAACAGAAC+CGG | 0.511065 | tig0018915:+489 | Msa1369930:intergenic |
| GTACAAAATGAAAGATGCTC+AGG | 0.511078 | tig0018915:-1233 | Msa1369930:CDS |
| CCATCACAAACAATGGTAAG+AGG | 0.513886 | tig0018915:+1193 | Msa1369930:intergenic |
| CTCAAAATGGTCGACCCCTA+CGG | 0.514180 | tig0018915:-3920 | Msa1369930:exon |
| TGGTGGTTGTTGCATCGGAA+TGG | 0.516635 | tig0018915:+3828 | Msa1369930:intergenic |
| GAAGACAGTGGTAGCTCCAC+AGG | 0.517798 | tig0018915:-385 | Msa1369930:intron |
| TTGTACCATTCTCTTCGAGT+AGG | 0.520014 | tig0018915:+1269 | Msa1369930:intergenic |
| GACGTTGATATCATCATTGT+CGG | 0.531291 | tig0018915:-3749 | Msa1369930:CDS |
| ATTAAAAGATCTGCATTCTC+CGG | 0.538231 | tig0018915:+3781 | Msa1369930:intergenic |
| GATATCATCATTGTCGGTGC+TGG | 0.540205 | tig0018915:-3743 | Msa1369930:CDS |
| AACACAACACAAACACAGCA+CGG | 0.549311 | tig0018915:-3982 | Msa1369930:five_prime_UTR |
| GCCGAGAGTGTAAGCGAGAG+CGG | 0.554979 | tig0018915:+3709 | Msa1369930:intergenic |
| AATCATGGTCACGTCATACT+GGG | 0.555739 | tig0018915:-522 | Msa1369930:CDS |
| GTGATCCACCCGAAACCGTA+GGG | 0.555940 | tig0018915:+3905 | Msa1369930:intergenic |
| TATCTCAAATTGATTGAGCT+GGG | 0.564234 | tig0018915:-2279 | Msa1369930:CDS |
| AGATCTGCATTCTCCGGTGG+CGG | 0.564343 | tig0018915:+3787 | Msa1369930:intergenic |
| AAGTTTCACTCAGATATCGC+TGG | 0.567766 | tig0018915:-2004 | Msa1369930:CDS |
| AAGGTTCCATCTATTTCCAA+TGG | 0.571490 | tig0018915:-426 | Msa1369930:CDS |
| ATCAATTTGAGATAGCCTCC+AGG | 0.576174 | tig0018915:+2288 | Msa1369930:intergenic |
| GTTGGCGAGTTGCTACAACC+TGG | 0.579187 | tig0018915:-2306 | Msa1369930:CDS |
| ACTTCCCTACTCGAAGAGAA+TGG | 0.579687 | tig0018915:-1274 | Msa1369930:CDS |
| AACTAAGCCAACAAAACAAG+AGG | 0.581348 | tig0018915:+572 | Msa1369930:intergenic |
| GGATAGAACAGAACCGGTGA+AGG | 0.588623 | tig0018915:+495 | Msa1369930:intergenic |
| GAGAACATTACAACCGCCAC+CGG | 0.589265 | tig0018915:-3800 | Msa1369930:CDS |
| GAACTTCCATGTGCAAATCA+TGG | 0.591041 | tig0018915:-537 | Msa1369930:CDS |
| TGTTATTATTGCAGATTGTG+TGG | 0.599886 | tig0018915:-2107 | Msa1369930:intron |
| AAACTCAAAACTCTTTGCGT+CGG | 0.601833 | tig0018915:+3946 | Msa1369930:intergenic |
| TGTAATGTTCTCAGCGGTGG+TGG | 0.602589 | tig0018915:+3811 | Msa1369930:intergenic |
| TGTAGTGTACGGTTGGAGCA+AGG | 0.602718 | tig0018915:-1304 | Msa1369930:intron |
| TCTCGCTTACACTCTCGGCA+AGG | 0.608886 | tig0018915:-3705 | Msa1369930:intron |
| GAAACAACCATCACAAACAA+TGG | 0.613084 | tig0018915:+1186 | Msa1369930:intergenic |
| TGTGATCCACCCGAAACCGT+AGG | 0.613578 | tig0018915:+3904 | Msa1369930:intergenic |
| GAGTGCAGCGAGAGTGATGA+GGG | 0.614895 | tig0018915:+3877 | Msa1369930:intergenic |
| GACGGAGGGAGTACTTGGGA+AGG | 0.618544 | tig0018915:+1927 | Msa1369930:intergenic |
| ATCTAATGTAGGATGGACGA+CGG | 0.624069 | tig0018915:-2371 | Msa1369930:intron |
| ATAGATGGAACCTTCTGACC+AGG | 0.631618 | tig0018915:+435 | None:intergenic |
| TTACGTCCAGCGAAGAGAGA+GGG | 0.632879 | tig0018915:-4007 | None:intergenic |
| TCTAATGTAGGATGGACGAC+GGG | 0.640302 | tig0018915:-2370 | Msa1369930:intron |
| CCTTAGGATTACAAAGAGAA+CGG | 0.642410 | tig0018915:+1152 | None:intergenic |
| GAGGGAGTACTTGGGAAGGG+AGG | 0.650679 | tig0018915:+1931 | None:intergenic |
| AAAAGATCTGCATTCTCCGG+TGG | 0.650741 | tig0018915:+3784 | None:intergenic |
| GGTTGTAATGTTCTCAGCGG+TGG | 0.651335 | tig0018915:+3808 | None:intergenic |
| ATTACGTCCAGCGAAGAGAG+AGG | 0.654846 | tig0018915:-4008 | None:intergenic |
| ACGGAGGGAGTACTTGGGAA+GGG | 0.655483 | tig0018915:+1928 | Msa1369930:intergenic |
| TCGACCCCTACGGTTTCGGG+TGG | 0.658583 | tig0018915:-3910 | Msa1369930:CDS |
| GGCAAAGTATTTGAAGACAG+TGG | 0.664630 | tig0018915:-397 | Msa1369930:CDS |
| ACTAAGCCAACAAAACAAGA+GGG | 0.667139 | tig0018915:+573 | Msa1369930:intergenic |
| CATACTGGGAGATCCTTCAC+CGG | 0.681263 | tig0018915:-508 | Msa1369930:CDS |
| GGCGAGTTGCTACAACCTGG+AGG | 0.693043 | tig0018915:-2303 | Msa1369930:CDS |
| GCTGGAAGAAGCTTTCACAA+TGG | 0.694395 | tig0018915:-1986 | Msa1369930:CDS |
| GGCGGTTGTAATGTTCTCAG+CGG | 0.696843 | tig0018915:+3805 | Msa1369920:intergenic |
| AGAGTGCAGCGAGAGTGATG+AGG | 0.699584 | tig0018915:+3876 | Msa1369920:intergenic |
| TGATCCACCCGAAACCGTAG+GGG | 0.715386 | tig0018915:+3906 | Msa1369920:intergenic |
| ACGTGACCATGATTTGCACA+TGG | 0.721204 | tig0018915:+531 | Msa1369920:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTATATATTAATAAGT+TGG | - | tig0018915:993-1012 | Msa1369930:intron | 10.0% |
| !! | TAAACAAATGTTAATATGAA+TGG | + | tig0018915:358-377 | Msa1369930:intergenic | 15.0% |
| !!! | TAACTTTCAAATTTCTATTT+TGG | - | tig0018915:630-649 | Msa1369930:intron | 15.0% |
| !! | CCAAAATATAATACTTAAAA+TGG | + | tig0018915:687-706 | Msa1369930:intergenic | 15.0% |
| !!! | CCATTTTAAGTATTATATTT+TGG | - | tig0018915:684-703 | Msa1369930:intron | 15.0% |
| !! | TAAAATAATTGTAATTGTAG+CGG | - | tig0018915:777-796 | Msa1369930:intron | 15.0% |
| !! | TTAATATTTGAACTGTAAAT+AGG | + | tig0018915:1122-1141 | Msa1369930:intergenic | 15.0% |
| !! | ATTTACAGTTCAAATATTAA+TGG | - | tig0018915:1122-1141 | Msa1369930:intron | 15.0% |
| !!! | GATTTTTTTGCTTATAATTT+AGG | + | tig0018915:2099-2118 | Msa1369930:intergenic | 15.0% |
| !!! | TTTTGAAATAACATAAAAGT+TGG | + | tig0018915:2157-2176 | Msa1369930:intergenic | 15.0% |
| !!! | ATTTGCATTTAATTTTACTT+TGG | + | tig0018915:2192-2211 | Msa1369930:intergenic | 15.0% |
| !!! | ATAATTTTTTGTGTTTTTCT+TGG | + | tig0018915:2299-2318 | Msa1369930:intergenic | 15.0% |
| !! | AACTTTATATCAGAAAAAAA+CGG | + | tig0018915:2426-2445 | Msa1369930:intergenic | 15.0% |
| !!! | TTATGAATTTTGAATGGAAT+GGG | - | tig0018915:530-549 | Msa1369930:CDS | 20.0% |
| !! | TAATACAAAGTGATATTATC+TGG | + | tig0018915:712-731 | Msa1369930:intergenic | 20.0% |
| !! | AATTAAGGGATATTTATACA+GGG | + | tig0018915:1342-1361 | Msa1369930:intergenic | 20.0% |
| !!! | TAGTTTTCCATATTCATTTT+AGG | - | tig0018915:1387-1406 | Msa1369930:intron | 20.0% |
| !!! | AGTTTTCCATATTCATTTTA+GGG | - | tig0018915:1388-1407 | Msa1369930:intron | 20.0% |
| !!! | TTTTTGCTTATAATTTAGGA+CGG | + | tig0018915:2095-2114 | Msa1369930:intergenic | 20.0% |
| !!! | GTCTTTTTTGCTTATATTTT+GGG | + | tig0018915:2135-2154 | Msa1369930:intergenic | 20.0% |
| !!! | TTCTTATTGGTTAATGATTA+TGG | + | tig0018915:2246-2265 | Msa1369930:intergenic | 20.0% |
| !! | GATGTAAAAACAATTCTTAT+TGG | + | tig0018915:2259-2278 | Msa1369930:intergenic | 20.0% |
| !!! | TGTGTTTTTTGCTTATAAAT+TGG | - | tig0018915:2362-2381 | Msa1369930:CDS | 20.0% |
| !!! | GTGTTTTTTGCTTATAAATT+GGG | - | tig0018915:2363-2382 | Msa1369930:CDS | 20.0% |
| !! | TTTATTATAATCAATGACCT+TGG | + | tig0018915:2529-2548 | Msa1369930:intergenic | 20.0% |
| !!! | TTTTTATGTTATGTAGTGTA+CGG | - | tig0018915:2686-2705 | Msa1369930:intron | 20.0% |
| !! | TGTGAAATCATTTAATCTTA+TGG | + | tig0018915:3273-3292 | Msa1369930:intergenic | 20.0% |
| !!! | ACAAGTACAAATTGTTTTTT+AGG | - | tig0018915:3659-3678 | Msa1369930:intron | 20.0% |
| ! | AATTACGAAGAAATAGGAAT+GGG | + | tig0018915:331-350 | Msa1369930:intergenic | 25.0% |
| ! | AAATTACGAAGAAATAGGAA+TGG | + | tig0018915:332-351 | Msa1369930:intergenic | 25.0% |
| ! | ACAAATGTTAATATGAATGG+TGG | + | tig0018915:355-374 | Msa1369930:intergenic | 25.0% |
| !! | AAATTACTGTGTTTTGTATC+TGG | - | tig0018915:400-419 | Msa1369930:CDS | 25.0% |
| !! | TACCAGTTATGAATTTTGAA+TGG | - | tig0018915:524-543 | Msa1369930:CDS | 25.0% |
| ! | TTCCATTCAAAATTCATAAC+TGG | + | tig0018915:529-548 | Msa1369930:intergenic | 25.0% |
| !! | GTTATGAATTTTGAATGGAA+TGG | - | tig0018915:529-548 | Msa1369930:CDS | 25.0% |
| !! | TATGAATTTTGAATGGAATG+GGG | - | tig0018915:531-550 | Msa1369930:CDS | 25.0% |
| ! | TTAGAAATGACAACATTAGA+TGG | - | tig0018915:828-847 | Msa1369930:intron | 25.0% |
| !! | AGACATATAGATTTTGTGTA+AGG | - | tig0018915:889-908 | Msa1369930:intron | 25.0% |
| !!! | AGTTAGTTTTAGTTAGTTTG+AGG | - | tig0018915:1258-1277 | Msa1369930:CDS | 25.0% |
| ! | CAATTAAGGGATATTTATAC+AGG | + | tig0018915:1343-1362 | Msa1369930:intergenic | 25.0% |
| ! | CTGTATAAATATCCCTTAAT+TGG | - | tig0018915:1341-1360 | Msa1369930:intron | 25.0% |
| !! | GTTTTCCATATTCATTTTAG+GGG | - | tig0018915:1389-1408 | Msa1369930:intron | 25.0% |
| ! | AAAAAGATAGGAAAAAGAAG+AGG | + | tig0018915:1481-1500 | Msa1369930:intergenic | 25.0% |
| ! | GCATAACTATTATCTAATGT+AGG | - | tig0018915:1619-1638 | Msa1369930:intron | 25.0% |
| ! | AACTATTATCTAATGTAGGA+TGG | - | tig0018915:1623-1642 | Msa1369930:intron | 25.0% |
| !! | TGTTCTAAGTGAAGTTAAAA+AGG | + | tig0018915:1852-1871 | Msa1369930:intergenic | 25.0% |
| ! | TAACTTCACTTAGAACAAAA+AGG | - | tig0018915:1855-1874 | Msa1369930:intron | 25.0% |
| ! | AACTTCACTTAGAACAAAAA+GGG | - | tig0018915:1856-1875 | Msa1369930:intron | 25.0% |
| !!! | GGTCTTTTTTGCTTATATTT+TGG | + | tig0018915:2136-2155 | Msa1369930:intergenic | 25.0% |
| !! | TTTTCTTGGAATAAGTTTCA+TGG | + | tig0018915:2285-2304 | Msa1369930:intergenic | 25.0% |
| ! | AACAAAAACATAGTAGTTTG+AGG | + | tig0018915:2323-2342 | Msa1369930:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATTGGGA+CGG | - | tig0018915:2367-2386 | Msa1369930:intron | 25.0% |
| ! | GTGGAAATAATAGACAAAAT+AGG | - | tig0018915:2962-2981 | Msa1369930:intron | 25.0% |
| ! | AATAGACAAAATAGGATGTT+TGG | - | tig0018915:2970-2989 | Msa1369930:intron | 25.0% |
| ! | ATAGACAAAATAGGATGTTT+GGG | - | tig0018915:2971-2990 | Msa1369930:intron | 25.0% |
| ! | AGATAGTTGTATATCAACTA+AGG | - | tig0018915:3012-3031 | Msa1369930:intron | 25.0% |
| !!! | TATATCAACTAAGGTGTTTT+GGG | - | tig0018915:3021-3040 | Msa1369930:intron | 25.0% |
| ! | AAGACTTGAGGTAAATTATA+TGG | - | tig0018915:3144-3163 | Msa1369930:intron | 25.0% |
| ! | AACGTTATGATATTCTATCA+TGG | + | tig0018915:3183-3202 | Msa1369930:intergenic | 25.0% |
| !!! | TGGTTGTTTTATGATGTTAT+AGG | - | tig0018915:3244-3263 | Msa1369930:intron | 25.0% |
| ! | GTGTAAAGTAATTAAATGCT+AGG | + | tig0018915:3685-3704 | Msa1369930:intergenic | 25.0% |
| !!! | TTTTGAGTTTCCTCTCAAAA+TGG | - | tig0018915:68-87 | Msa1369930:CDS | 30.0% |
| ! | AATGGTTTTTACGAGAGAAA+AGG | + | tig0018915:158-177 | Msa1369930:intergenic | 30.0% |
| ATTAAAAGATCTGCATTCTC+CGG | + | tig0018915:223-242 | Msa1369930:intergenic | 30.0% | |
| ! | TGCAGATCTTTTAATCCAAA+CGG | - | tig0018915:228-247 | Msa1369930:intron | 30.0% |
| AACAGATTTAACCATGGATA+CGG | + | tig0018915:455-474 | Msa1369930:intergenic | 30.0% | |
| ATGGTTAAATCTGTTGTTGT+GGG | - | tig0018915:460-479 | Msa1369930:CDS | 30.0% | |
| GTAAGGAGAATTAGATCAAA+TGG | - | tig0018915:906-925 | Msa1369930:intron | 30.0% | |
| CATTGATGAACTCCAATTAA+GGG | + | tig0018915:1356-1375 | Msa1369930:intergenic | 30.0% | |
| TCATTGATGAACTCCAATTA+AGG | + | tig0018915:1357-1376 | Msa1369930:intergenic | 30.0% | |
| ! | GTTTTCCCCTAAAATGAATA+TGG | + | tig0018915:1397-1416 | Msa1369930:intergenic | 30.0% |
| TTAAAAACATCCAACATGTC+AGG | + | tig0018915:1555-1574 | Msa1369930:intergenic | 30.0% | |
| TATCTCAAATTGATTGAGCT+GGG | - | tig0018915:1722-1741 | Msa1369930:intron | 30.0% | |
| TTTCTTTCACTTCTTGATTC+TGG | - | tig0018915:1788-1807 | Msa1369930:intron | 30.0% | |
| TGTTATTATTGCAGATTGTG+TGG | - | tig0018915:1894-1913 | Msa1369930:intron | 30.0% | |
| TGATTATGGAGAGAATAGAA+AGG | + | tig0018915:2232-2251 | Msa1369930:intergenic | 30.0% | |
| AAAAACGGAATGTGAAGTAA+AGG | + | tig0018915:2411-2430 | Msa1369930:intergenic | 30.0% | |
| ! | GCTTTTCATTTGACATTGAA+AGG | - | tig0018915:2503-2522 | Msa1369930:intron | 30.0% |
| TAACAAGTAACAACTGAAGA+AGG | + | tig0018915:2652-2671 | Msa1369930:intergenic | 30.0% | |
| GAAGAGAATGGTACAATTAA+AGG | - | tig0018915:2739-2758 | Msa1369930:intron | 30.0% | |
| GTTGAAAATTTGATCACCTT+AGG | + | tig0018915:2868-2887 | Msa1369930:intergenic | 30.0% | |
| !! | GTATATCAACTAAGGTGTTT+TGG | - | tig0018915:3020-3039 | Msa1369930:intron | 30.0% |
| TGATTTACTATGGGATTTAC+AGG | + | tig0018915:3062-3081 | Msa1369930:intergenic | 30.0% | |
| AAATCCCATAGTAAATCAGA+TGG | - | tig0018915:3064-3083 | Msa1369930:intron | 30.0% | |
| ! | ATTTTTCTAGATCTACCTCT+AGG | + | tig0018915:3104-3123 | Msa1369930:intergenic | 30.0% |
| GGTAGATCTAGAAAAATTGT+AGG | - | tig0018915:3107-3126 | Msa1369930:intron | 30.0% | |
| TGATTATCAAGAAAGACTTG+AGG | - | tig0018915:3132-3151 | Msa1369930:intron | 30.0% | |
| TTATCTAACGGAATAAGACT+TGG | - | tig0018915:3224-3243 | Msa1369930:intron | 30.0% | |
| AAAAAAAAACCGACGAGAAT+AGG | + | tig0018915:3320-3339 | Msa1369930:intergenic | 30.0% | |
| ! | TTATTTCTTTCTGTGTTTGC+AGG | - | tig0018915:3397-3416 | Msa1369930:intron | 30.0% |
| CGAATTTCTGTACTACTTAT+GGG | + | tig0018915:3530-3549 | Msa1369930:intergenic | 30.0% | |
| ATTTCACCATTGGAAATAGA+TGG | + | tig0018915:3584-3603 | Msa1369930:intergenic | 30.0% | |
| ATCTATTTCCAATGGTGAAA+TGG | - | tig0018915:3583-3602 | Msa1369930:intron | 30.0% | |
| TAAGAGTTAGCTGATGATAA+GGG | - | tig0018915:3740-3759 | Msa1369930:CDS | 30.0% | |
| GATAAGGGAAAAAAATTTGC+AGG | - | tig0018915:3755-3774 | Msa1369930:CDS | 30.0% | |
| AAACTCAAAACTCTTTGCGT+CGG | + | tig0018915:58-77 | Msa1369930:intergenic | 35.0% | |
| GACGTTGATATCATCATTGT+CGG | - | tig0018915:252-271 | Msa1369930:intron | 35.0% | |
| GGTGGAAATTACGAAGAAAT+AGG | + | tig0018915:337-356 | Msa1369930:intergenic | 35.0% | |
| CACAACAACAGATTTAACCA+TGG | + | tig0018915:461-480 | Msa1369930:intergenic | 35.0% | |
| CATGGTTAAATCTGTTGTTG+TGG | - | tig0018915:459-478 | Msa1369930:CDS | 35.0% | |
| !! | TTTAGGTTTGTTGACTGTAC+AGG | - | tig0018915:489-508 | Msa1369930:CDS | 35.0% |
| GATGCATAGTATCACTAACA+TGG | + | tig0018915:573-592 | Msa1369930:intergenic | 35.0% | |
| TGTTAGTGATACTATGCATC+CGG | - | tig0018915:573-592 | Msa1369930:CDS | 35.0% | |
| ! | TTGTAATTGTAGCGGAGATA+AGG | - | tig0018915:785-804 | Msa1369930:intron | 35.0% |
| AGATGGTAGAAACTCAACTT+AGG | - | tig0018915:845-864 | Msa1369930:intron | 35.0% | |
| AGTGAAATCAAAAGAGACAG+AGG | - | tig0018915:934-953 | Msa1369930:intron | 35.0% | |
| GTTTGTACTTAGAAATGGCA+AGG | + | tig0018915:1217-1236 | Msa1369930:intergenic | 35.0% | |
| ! | TGCCATTTCTAAGTACAAAC+TGG | - | tig0018915:1217-1236 | Msa1369930:CDS | 35.0% |
| GCCATTTCTAAGTACAAACT+GGG | - | tig0018915:1218-1237 | Msa1369930:CDS | 35.0% | |
| CCATTTCTAAGTACAAACTG+GGG | - | tig0018915:1219-1238 | Msa1369930:CDS | 35.0% | |
| AAACTGGGAGACAAAAAGAT+AGG | + | tig0018915:1493-1512 | Msa1369930:intergenic | 35.0% | |
| ACAGAACGCAAACAAAAACT+GGG | + | tig0018915:1508-1527 | Msa1369930:intergenic | 35.0% | |
| AACAGAACGCAAACAAAAAC+TGG | + | tig0018915:1509-1528 | Msa1369930:intergenic | 35.0% | |
| CTATCTCAAATTGATTGAGC+TGG | - | tig0018915:1721-1740 | Msa1369930:intron | 35.0% | |
| GAAACTTAGCAGTGTGTATA+TGG | - | tig0018915:1758-1777 | Msa1369930:intron | 35.0% | |
| ! | TCTGAGTGAAACTTTTCCAA+GGG | + | tig0018915:1991-2010 | Msa1369930:intergenic | 35.0% |
| ! | ATCTGAGTGAAACTTTTCCA+AGG | + | tig0018915:1992-2011 | Msa1369930:intergenic | 35.0% |
| ! | TGCTTATAATTTAGGACGGA+GGG | + | tig0018915:2091-2110 | Msa1369930:intergenic | 35.0% |
| ! | TTGCTTATAATTTAGGACGG+AGG | + | tig0018915:2092-2111 | Msa1369930:intergenic | 35.0% |
| TATGTTATGTAGTGTACGGT+TGG | - | tig0018915:2690-2709 | Msa1369930:intron | 35.0% | |
| GTACAAAATGAAAGATGCTC+AGG | - | tig0018915:2768-2787 | Msa1369930:intron | 35.0% | |
| GAAACAACCATCACAAACAA+TGG | + | tig0018915:2818-2837 | Msa1369930:intergenic | 35.0% | |
| CCTTAGGATTACAAAGAGAA+CGG | + | tig0018915:2852-2871 | Msa1369930:intergenic | 35.0% | |
| CTCTCCATCTGATTTACTAT+GGG | + | tig0018915:3071-3090 | Msa1369930:intergenic | 35.0% | |
| ACTCTCCATCTGATTTACTA+TGG | + | tig0018915:3072-3091 | Msa1369930:intergenic | 35.0% | |
| ATGTAGCCAACGTTATCTAA+CGG | - | tig0018915:3212-3231 | Msa1369930:intron | 35.0% | |
| CTTATTCCGTTAGATAACGT+TGG | + | tig0018915:3221-3240 | Msa1369930:intergenic | 35.0% | |
| ACCAATAGTCTGTAGAATTC+TGG | - | tig0018915:3354-3373 | Msa1369930:intron | 35.0% | |
| TCCAGAATTCTACAGACTAT+TGG | + | tig0018915:3358-3377 | Msa1369930:intergenic | 35.0% | |
| ACTAAGCCAACAAAACAAGA+GGG | + | tig0018915:3431-3450 | Msa1369930:intergenic | 35.0% | |
| AACTAAGCCAACAAAACAAG+AGG | + | tig0018915:3432-3451 | Msa1369930:intergenic | 35.0% | |
| GCGAATTTCTGTACTACTTA+TGG | + | tig0018915:3531-3550 | Msa1369930:intergenic | 35.0% | |
| AAGGTTCCATCTATTTCCAA+TGG | - | tig0018915:3575-3594 | Msa1369930:intron | 35.0% | |
| ! | ATACTTTGCCATTTCACCAT+TGG | + | tig0018915:3594-3613 | Msa1369930:intergenic | 35.0% |
| ACTTTACACTTAGTGAGAAC+AGG | - | tig0018915:3696-3715 | Msa1369930:intron | 35.0% | |
| CTTTACACTTAGTGAGAACA+GGG | - | tig0018915:3697-3716 | Msa1369930:intron | 35.0% | |
| CTAAGAGTTAGCTGATGATA+AGG | - | tig0018915:3739-3758 | Msa1369930:CDS | 35.0% | |
| AACACAACACAAACACAGCA+CGG | - | tig0018915:19-38 | Msa1369930:CDS | 40.0% | |
| TAAATCTGTTGTTGTGGGTC+AGG | - | tig0018915:465-484 | Msa1369930:CDS | 40.0% | |
| AAATCTGTTGTTGTGGGTCA+GGG | - | tig0018915:466-485 | Msa1369930:CDS | 40.0% | |
| AATGGATATTCCGACAGTCA+CGG | - | tig0018915:1140-1159 | Msa1369930:intron | 40.0% | |
| TACTTAGAAATGGCAAGGTG+GGG | + | tig0018915:1212-1231 | Msa1369930:intergenic | 40.0% | |
| GTACTTAGAAATGGCAAGGT+GGG | + | tig0018915:1213-1232 | Msa1369930:intergenic | 40.0% | |
| TGTACTTAGAAATGGCAAGG+TGG | + | tig0018915:1214-1233 | Msa1369930:intergenic | 40.0% | |
| CCCCAGTTTGTACTTAGAAA+TGG | + | tig0018915:1222-1241 | Msa1369930:intergenic | 40.0% | |
| !! | AGTTTGTTAGTTCCCTTACG+AGG | - | tig0018915:1292-1311 | Msa1369930:CDS | 40.0% |
| ! | GTTTGTTAGTTCCCTTACGA+GGG | - | tig0018915:1293-1312 | Msa1369930:CDS | 40.0% |
| AGGGTAAAATACCCTCGTAA+GGG | + | tig0018915:1307-1326 | Msa1369930:intergenic | 40.0% | |
| TACAGGGAGCAAAAACAAGA+GGG | + | tig0018915:1326-1345 | Msa1369930:intergenic | 40.0% | |
| ATACAGGGAGCAAAAACAAG+AGG | + | tig0018915:1327-1346 | Msa1369930:intergenic | 40.0% | |
| CTGACTTCTAACTTTCCCTT+TGG | - | tig0018915:1424-1443 | Msa1369930:intron | 40.0% | |
| TAACTTTCCCTTTGGTCTCA+AGG | - | tig0018915:1432-1451 | Msa1369930:intron | 40.0% | |
| AGTAGAACCTTGAGACCAAA+GGG | + | tig0018915:1442-1461 | Msa1369930:intergenic | 40.0% | |
| TAGTAGAACCTTGAGACCAA+AGG | + | tig0018915:1443-1462 | Msa1369930:intergenic | 40.0% | |
| !! | CAAGTTGATTCCTGACATGT+TGG | - | tig0018915:1542-1561 | Msa1369930:intron | 40.0% |
| ATCTAATGTAGGATGGACGA+CGG | - | tig0018915:1630-1649 | Msa1369930:intron | 40.0% | |
| AATGAACCAGACCGAATTGT+TGG | - | tig0018915:1677-1696 | Msa1369930:intron | 40.0% | |
| ! | ATCAATTTGAGATAGCCTCC+AGG | + | tig0018915:1716-1735 | Msa1369930:intergenic | 40.0% |
| ATTGATGCTCAGCAAGTGTT+TGG | - | tig0018915:1922-1941 | Msa1369930:intron | 40.0% | |
| TTGATGCTCAGCAAGTGTTT+GGG | - | tig0018915:1923-1942 | Msa1369930:intron | 40.0% | |
| ! | GTTTGGGTATGCTCTTTTCA+AGG | - | tig0018915:1939-1958 | Msa1369930:intron | 40.0% |
| !! | GGTATGCTCTTTTCAAGGAT+GGG | - | tig0018915:1944-1963 | Msa1369930:CDS | 40.0% |
| AAGTTTCACTCAGATATCGC+TGG | - | tig0018915:1997-2016 | Msa1369930:CDS | 40.0% | |
| CTGGAAGAAGCTTTCACAAT+GGG | - | tig0018915:2016-2035 | Msa1369930:CDS | 40.0% | |
| TTGCTTATAAATTGGGACGG+AGG | - | tig0018915:2370-2389 | Msa1369930:intron | 40.0% | |
| TGCTTATAAATTGGGACGGA+GGG | - | tig0018915:2371-2390 | Msa1369930:intron | 40.0% | |
| CATTTGACATTGAAAGGCCA+AGG | - | tig0018915:2509-2528 | Msa1369930:intron | 40.0% | |
| TGTACCATTCTCTTCGAGTA+GGG | + | tig0018915:2734-2753 | Msa1369930:intergenic | 40.0% | |
| TTGTACCATTCTCTTCGAGT+AGG | + | tig0018915:2735-2754 | Msa1369930:intergenic | 40.0% | |
| CCATCACAAACAATGGTAAG+AGG | + | tig0018915:2811-2830 | Msa1369930:intergenic | 40.0% | |
| CCTCTTACCATTGTTTGTGA+TGG | - | tig0018915:2808-2827 | Msa1369930:intron | 40.0% | |
| CCGTTCTCTTTGTAATCCTA+AGG | - | tig0018915:2849-2868 | Msa1369930:intron | 40.0% | |
| AGAATGTTGCACTTGATGTG+TGG | - | tig0018915:2943-2962 | Msa1369930:intron | 40.0% | |
| GAACTTCCATGTGCAAATCA+TGG | - | tig0018915:3464-3483 | Msa1369930:intron | 40.0% | |
| AAATCATGGTCACGTCATAC+TGG | - | tig0018915:3478-3497 | Msa1369930:intron | 40.0% | |
| AATCATGGTCACGTCATACT+GGG | - | tig0018915:3479-3498 | Msa1369930:intron | 40.0% | |
| CTTATGGGATAGAACAGAAC+CGG | + | tig0018915:3515-3534 | Msa1369930:intergenic | 40.0% | |
| TAGTACAGAAATTCGCTGTC+TGG | - | tig0018915:3535-3554 | Msa1369930:intron | 40.0% | |
| ! | GGCAAAGTATTTGAAGACAG+TGG | - | tig0018915:3604-3623 | Msa1369930:intron | 40.0% |
| CATCAGCTAACTCTTAGCTA+AGG | + | tig0018915:3736-3755 | Msa1369930:intergenic | 40.0% | |
| TGTTTGGCATTGTCCTTATG+TGG | + | tig0018915:3827-3846 | Msa1369930:intergenic | 40.0% | |
| GCATCATTCAGGTCAAGTAA+AGG | + | tig0018915:3987-4006 | Msa1369930:intergenic | 40.0% | |
| AAAAGATCTGCATTCTCCGG+TGG | + | tig0018915:220-239 | Msa1369930:intergenic | 45.0% | |
| ATGATATCAACGTCGCCGTT+TGG | + | tig0018915:246-265 | Msa1369930:intergenic | 45.0% | |
| GATATCATCATTGTCGGTGC+TGG | - | tig0018915:258-277 | Msa1369930:intron | 45.0% | |
| ACTGTGAATGTCCGTATCCA+TGG | - | tig0018915:441-460 | Msa1369930:CDS | 45.0% | |
| TTGTCGCTGTCTAAGTACAC+CGG | + | tig0018915:595-614 | Msa1369930:intergenic | 45.0% | |
| AAGTGTGGTCGGTTACATCA+TGG | + | tig0018915:1057-1076 | Msa1369930:intergenic | 45.0% | |
| ATGTAACCGACCACACTTAG+TGG | - | tig0018915:1059-1078 | Msa1369930:intron | 45.0% | |
| TTATCGCCACTAAGTGTGGT+CGG | + | tig0018915:1068-1087 | Msa1369930:intergenic | 45.0% | |
| AACCTTATCGCCACTAAGTG+TGG | + | tig0018915:1072-1091 | Msa1369930:intergenic | 45.0% | |
| CACTTAGTGGCGATAAGGTT+TGG | - | tig0018915:1072-1091 | Msa1369930:intron | 45.0% | |
| ATGGATATTCCGACAGTCAC+GGG | - | tig0018915:1141-1160 | Msa1369930:intron | 45.0% | |
| ! | GGCAGCAGATTTTTACCCTT+GGG | - | tig0018915:1163-1182 | Msa1369930:CDS | 45.0% |
| ! | GATTTTTACCCTTGGGAGTG+AGG | - | tig0018915:1170-1189 | Msa1369930:CDS | 45.0% |
| GAGGGTAAAATACCCTCGTA+AGG | + | tig0018915:1308-1327 | Msa1369930:intergenic | 45.0% | |
| TCTAATGTAGGATGGACGAC+GGG | - | tig0018915:1631-1650 | Msa1369930:intron | 45.0% | |
| GTAGCAACTCGCCAACAATT+CGG | + | tig0018915:1691-1710 | Msa1369930:intergenic | 45.0% | |
| TTGATTGAGCTGGGACTTGA+AGG | - | tig0018915:1731-1750 | Msa1369930:intron | 45.0% | |
| !! | GGGTATGCTCTTTTCAAGGA+TGG | - | tig0018915:1943-1962 | Msa1369930:CDS | 45.0% |
| GCTGGAAGAAGCTTTCACAA+TGG | - | tig0018915:2015-2034 | Msa1369930:CDS | 45.0% | |
| ATTCGTGCGTGCAGAATCAT+TGG | + | tig0018915:2471-2490 | Msa1369930:intergenic | 45.0% | |
| ACTTCCCTACTCGAAGAGAA+TGG | - | tig0018915:2727-2746 | Msa1369930:intron | 45.0% | |
| !! | TAAGGTGTTTTGGGCATGTG+TGG | - | tig0018915:3030-3049 | Msa1369930:intron | 45.0% |
| GAGAGTAGCTCAAATCCTAG+AGG | - | tig0018915:3086-3105 | Msa1369930:intron | 45.0% | |
| CTCTCTACTCCTATTCTCGT+CGG | - | tig0018915:3308-3327 | Msa1369930:intron | 45.0% | |
| CTTTCTGTGTTTGCAGGTAG+AGG | - | tig0018915:3403-3422 | Msa1369930:intron | 45.0% | |
| !!! | GAGGTTCCCTCTTGTTTTGT+TGG | - | tig0018915:3422-3441 | Msa1369930:intron | 45.0% |
| ! | ACGTGACCATGATTTGCACA+TGG | + | tig0018915:3473-3492 | Msa1369930:intergenic | 45.0% |
| ATAGATGGAACCTTCTGACC+AGG | + | tig0018915:3569-3588 | Msa1369930:intergenic | 45.0% | |
| CTTGTAGAACCACGAGTAGA+TGG | + | tig0018915:3644-3663 | Msa1369930:intergenic | 45.0% | |
| TGAAAGCAGCATGAAGCTCA+GGG | + | tig0018915:3785-3804 | Msa1369930:intergenic | 45.0% | |
| ATGAAAGCAGCATGAAGCTC+AGG | + | tig0018915:3786-3805 | Msa1369930:intergenic | 45.0% | |
| TTCATAGCTGCAGTGGACAA+AGG | - | tig0018915:3801-3820 | Msa1369930:CDS | 45.0% | |
| GAATGCATCTCCCATCAGAA+GGG | + | tig0018915:3886-3905 | Msa1369930:intergenic | 45.0% | |
| TGAATGCATCTCCCATCAGA+AGG | + | tig0018915:3887-3906 | Msa1369930:intergenic | 45.0% | |
| AAAGGCTAGGTGCATCATTC+AGG | + | tig0018915:3998-4017 | Msa1369930:intergenic | 45.0% | |
| !! | ATAAAATAAAAATAAAACAA+TGG | + | tig0018915:3381-3400 | Msa1369930:intergenic | 5.0% |
| ! | TAGGGGTCGACCATTTTGAG+AGG | + | tig0018915:81-100 | Msa1369930:intergenic | 50.0% |
| CTCAAAATGGTCGACCCCTA+CGG | - | tig0018915:81-100 | Msa1369930:CDS | 50.0% | |
| TGGTGGTTGTTGCATCGGAA+TGG | + | tig0018915:176-195 | Msa1369930:intergenic | 50.0% | |
| TGTAATGTTCTCAGCGGTGG+TGG | + | tig0018915:193-212 | Msa1369930:intergenic | 50.0% | |
| GGTTGTAATGTTCTCAGCGG+TGG | + | tig0018915:196-215 | Msa1369930:intergenic | 50.0% | |
| GGCGGTTGTAATGTTCTCAG+CGG | + | tig0018915:199-218 | Msa1369930:intergenic | 50.0% | |
| GAGAACATTACAACCGCCAC+CGG | - | tig0018915:201-220 | Msa1369930:CDS | 50.0% | |
| GTTGTTGTGGGTCAGGGTTT+AGG | - | tig0018915:472-491 | Msa1369930:CDS | 50.0% | |
| GACCACACTTAGTGGCGATA+AGG | - | tig0018915:1067-1086 | Msa1369930:intron | 50.0% | |
| TGGATATTCCGACAGTCACG+GGG | - | tig0018915:1142-1161 | Msa1369930:intron | 50.0% | |
| ! | GGGCAGCAGATTTTTACCCT+TGG | - | tig0018915:1162-1181 | Msa1369930:CDS | 50.0% |
| GGGTAATTCCTCACTCCCAA+GGG | + | tig0018915:1181-1200 | Msa1369930:intergenic | 50.0% | |
| AGGGTAATTCCTCACTCCCA+AGG | + | tig0018915:1182-1201 | Msa1369930:intergenic | 50.0% | |
| GTTCTACTATCCAGCTCAGC+TGG | - | tig0018915:1454-1473 | Msa1369930:intron | 50.0% | |
| AACTCGCCAACAATTCGGTC+TGG | + | tig0018915:1686-1705 | Msa1369930:intergenic | 50.0% | |
| ! | TTCTGGCTGATCTTGAGTGC+TGG | - | tig0018915:1805-1824 | Msa1369930:intron | 50.0% |
| CACGAGACTCTCTTATCCCT+TGG | - | tig0018915:1972-1991 | Msa1369930:CDS | 50.0% | |
| !! | TTAGGACGGAGGGAGTACTT+GGG | + | tig0018915:2081-2100 | Msa1369930:intergenic | 50.0% |
| !! | TTTAGGACGGAGGGAGTACT+TGG | + | tig0018915:2082-2101 | Msa1369930:intergenic | 50.0% |
| ! | AATTGGGACGGAGGGAGTAT+TGG | - | tig0018915:2379-2398 | Msa1369930:intron | 50.0% |
| TGTAGTGTACGGTTGGAGCA+AGG | - | tig0018915:2697-2716 | Msa1369930:intron | 50.0% | |
| CATACTGGGAGATCCTTCAC+CGG | - | tig0018915:3493-3512 | Msa1369930:intron | 50.0% | |
| GGATAGAACAGAACCGGTGA+AGG | + | tig0018915:3509-3528 | Msa1369930:intergenic | 50.0% | |
| ! | GGTTGATGTTCCTGGTCAGA+AGG | - | tig0018915:3556-3575 | Msa1369930:intron | 50.0% |
| AAAGCAGCATGAAGCTCAGG+GGG | + | tig0018915:3783-3802 | Msa1369930:intergenic | 50.0% | |
| GAAAGCAGCATGAAGCTCAG+GGG | + | tig0018915:3784-3803 | Msa1369930:intergenic | 50.0% | |
| !! | TGCTGCTTTCATAGCTGCAG+TGG | - | tig0018915:3794-3813 | Msa1369930:CDS | 50.0% |
| CAGTGGACAAAGGCCACATA+AGG | - | tig0018915:3811-3830 | Msa1369930:CDS | 50.0% | |
| ATGGTCGACCCCTACGGTTT+CGG | - | tig0018915:87-106 | Msa1369930:CDS | 55.0% | |
| TGATCCACCCGAAACCGTAG+GGG | + | tig0018915:98-117 | Msa1369930:intergenic | 55.0% | |
| GTGATCCACCCGAAACCGTA+GGG | + | tig0018915:99-118 | Msa1369930:intergenic | 55.0% | |
| TGTGATCCACCCGAAACCGT+AGG | + | tig0018915:100-119 | Msa1369930:intergenic | 55.0% | |
| GAGTGCAGCGAGAGTGATGA+GGG | + | tig0018915:127-146 | Msa1369930:intergenic | 55.0% | |
| AGAGTGCAGCGAGAGTGATG+AGG | + | tig0018915:128-147 | Msa1369930:intergenic | 55.0% | |
| ! | AGCGGTGGTGGTTGTTGCAT+CGG | + | tig0018915:181-200 | Msa1369930:intergenic | 55.0% |
| AGATCTGCATTCTCCGGTGG+CGG | + | tig0018915:217-236 | Msa1369930:intergenic | 55.0% | |
| TCCGCTCTCGCTTACACTCT+CGG | - | tig0018915:291-310 | Msa1369930:intron | 55.0% | |
| TCTCGCTTACACTCTCGGCA+AGG | - | tig0018915:296-315 | Msa1369930:intron | 55.0% | |
| AAGAAGAGGACCAGCTGAGC+TGG | + | tig0018915:1467-1486 | Msa1369930:intergenic | 55.0% | |
| GTTGGCGAGTTGCTACAACC+TGG | - | tig0018915:1695-1714 | Msa1369930:intron | 55.0% | |
| !! | ACGGAGGGAGTACTTGGGAA+GGG | + | tig0018915:2076-2095 | Msa1369930:intergenic | 55.0% |
| !! | GGTGTTTTGGGCATGTGTGG+AGG | - | tig0018915:3033-3052 | Msa1369930:intron | 55.0% |
| ! | CGCTGTCTGGTTGATGTTCC+TGG | - | tig0018915:3548-3567 | Msa1369930:intron | 55.0% |
| GAAGACAGTGGTAGCTCCAC+AGG | - | tig0018915:3616-3635 | Msa1369930:intron | 55.0% | |
| CCACGAGTAGATGGTACCTG+TGG | + | tig0018915:3635-3654 | Msa1369930:intergenic | 55.0% | |
| CCACAGGTACCATCTACTCG+TGG | - | tig0018915:3632-3651 | Msa1369930:intron | 55.0% | |
| TCGGCTGGCATGCTTCTGTT+TGG | + | tig0018915:3843-3862 | Msa1369930:intergenic | 55.0% | |
| AACATGCGCCATCCCCTAAC+CGG | - | tig0018915:3906-3925 | Msa1369930:CDS | 55.0% | |
| TGGTCGACCCCTACGGTTTC+GGG | - | tig0018915:88-107 | Msa1369930:CDS | 60.0% | |
| !! | ATTGTCGGTGCTGGTGTCGC+CGG | - | tig0018915:267-286 | Msa1369930:intron | 60.0% |
| AGTGTAAGCGAGAGCGGAGC+CGG | + | tig0018915:289-308 | Msa1369930:intergenic | 60.0% | |
| ! | GCCGAGAGTGTAAGCGAGAG+CGG | + | tig0018915:295-314 | Msa1369930:intergenic | 60.0% |
| ATCTGCTGCCCCGTGACTGT+CGG | + | tig0018915:1153-1172 | Msa1369930:intergenic | 60.0% | |
| GGCGAGTTGCTACAACCTGG+AGG | - | tig0018915:1698-1717 | Msa1369930:intron | 60.0% | |
| !! | GAGGGAGTACTTGGGAAGGG+AGG | + | tig0018915:2073-2092 | Msa1369930:intergenic | 60.0% |
| !! | GACGGAGGGAGTACTTGGGA+AGG | + | tig0018915:2077-2096 | Msa1369930:intergenic | 60.0% |
| AGCCGATCCTTATCCCACCC+CGG | - | tig0018915:3857-3876 | Msa1369930:CDS | 60.0% | |
| TCCCGGGGTGGGATAAGGAT+CGG | + | tig0018915:3862-3881 | Msa1369930:intergenic | 60.0% | |
| TCTCCCATCAGAAGGGCTCC+CGG | + | tig0018915:3879-3898 | Msa1369930:intergenic | 60.0% | |
| ACATGCGCCATCCCCTAACC+GGG | - | tig0018915:3907-3926 | Msa1369930:CDS | 60.0% | |
| AGTCATCCCACCCCCGGTTA+GGG | + | tig0018915:3922-3941 | Msa1369930:intergenic | 60.0% | |
| TCGACCCCTACGGTTTCGGG+TGG | - | tig0018915:91-110 | Msa1369930:CDS | 65.0% | |
| GGCAAGGTGGGGTGTGCACA+GGG | + | tig0018915:1201-1220 | Msa1369930:intergenic | 65.0% | |
| TGGCAAGGTGGGGTGTGCAC+AGG | + | tig0018915:1202-1221 | Msa1369930:intergenic | 65.0% | |
| GGGGTGGGATAAGGATCGGC+TGG | + | tig0018915:3858-3877 | Msa1369930:intergenic | 65.0% | |
| GCCGATCCTTATCCCACCCC+GGG | - | tig0018915:3858-3877 | Msa1369930:CDS | 65.0% | |
| ATCAGAAGGGCTCCCGGGGT+GGG | + | tig0018915:3873-3892 | Msa1369930:intergenic | 65.0% | |
| ACCCCGGGAGCCCTTCTGAT+GGG | - | tig0018915:3873-3892 | Msa1369930:CDS | 65.0% | |
| TCCCATCAGAAGGGCTCCCG+GGG | + | tig0018915:3877-3896 | Msa1369930:intergenic | 65.0% | |
| CTCCCATCAGAAGGGCTCCC+GGG | + | tig0018915:3878-3897 | Msa1369930:intergenic | 65.0% | |
| CATGCGCCATCCCCTAACCG+GGG | - | tig0018915:3908-3927 | Msa1369930:CDS | 65.0% | |
| ATGCGCCATCCCCTAACCGG+GGG | - | tig0018915:3909-3928 | Msa1369930:CDS | 65.0% | |
| GTCATCCCACCCCCGGTTAG+GGG | + | tig0018915:3921-3940 | Msa1369930:intergenic | 65.0% | |
| CAGTCATCCCACCCCCGGTT+AGG | + | tig0018915:3923-3942 | Msa1369930:intergenic | 65.0% | |
| AACCGGGGGTGGGATGACTG+TGG | - | tig0018915:3923-3942 | Msa1369930:exon | 65.0% | |
| TGCCACAGTCATCCCACCCC+CGG | + | tig0018915:3928-3947 | Msa1369930:intergenic | 65.0% | |
| AGGGCTCCCGGGGTGGGATA+AGG | + | tig0018915:3867-3886 | Msa1369930:intergenic | 70.0% | |
| CATCAGAAGGGCTCCCGGGG+TGG | + | tig0018915:3874-3893 | Msa1369930:intergenic | 70.0% | |
| CACCCCGGGAGCCCTTCTGA+TGG | - | tig0018915:3872-3891 | Msa1369930:CDS | 70.0% | |
| GCCATCCCCTAACCGGGGGT+GGG | - | tig0018915:3913-3932 | Msa1369930:CDS | 70.0% | |
| TCCCACCCCCGGTTAGGGGA+TGG | + | tig0018915:3917-3936 | Msa1369930:intergenic | 70.0% | |
| CGCCATCCCCTAACCGGGGG+TGG | - | tig0018915:3912-3931 | Msa1369930:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018915 | gene | 1 | 4022 | 1 | ID=Msa1369930;Name=Msa1369930 |
| tig0018915 | mRNA | 1 | 4022 | 1 | ID=Msa1369930-mRNA-1;Parent=Msa1369930;Name=Msa1369930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=86|1|1|1|1|1|6|0|384 |
| tig0018915 | exon | 1 | 246 | 1 | ID=Msa1369930-mRNA-1:exon:1418;Parent=Msa1369930-mRNA-1 |
| tig0018915 | exon | 386 | 604 | 386 | ID=Msa1369930-mRNA-1:exon:1417;Parent=Msa1369930-mRNA-1 |
| tig0018915 | exon | 1153 | 1321 | 1153 | ID=Msa1369930-mRNA-1:exon:1416;Parent=Msa1369930-mRNA-1 |
| tig0018915 | exon | 1941 | 2115 | 1941 | ID=Msa1369930-mRNA-1:exon:1415;Parent=Msa1369930-mRNA-1 |
| tig0018915 | exon | 2271 | 2382 | 2271 | ID=Msa1369930-mRNA-1:exon:1414;Parent=Msa1369930-mRNA-1 |
| tig0018915 | exon | 3706 | 4022 | 3706 | ID=Msa1369930-mRNA-1:exon:1413;Parent=Msa1369930-mRNA-1 |
| tig0018915 | five_prime_UTR | 3937 | 4022 | 3937 | ID=Msa1369930-mRNA-1:five_prime_utr;Parent=Msa1369930-mRNA-1 |
| tig0018915 | CDS | 3706 | 3936 | 3706 | ID=Msa1369930-mRNA-1:cds;Parent=Msa1369930-mRNA-1 |
| tig0018915 | CDS | 2271 | 2382 | 2271 | ID=Msa1369930-mRNA-1:cds;Parent=Msa1369930-mRNA-1 |
| tig0018915 | CDS | 1941 | 2115 | 1941 | ID=Msa1369930-mRNA-1:cds;Parent=Msa1369930-mRNA-1 |
| tig0018915 | CDS | 1153 | 1321 | 1153 | ID=Msa1369930-mRNA-1:cds;Parent=Msa1369930-mRNA-1 |
| tig0018915 | CDS | 386 | 604 | 386 | ID=Msa1369930-mRNA-1:cds;Parent=Msa1369930-mRNA-1 |
| tig0018915 | CDS | 1 | 246 | 1 | ID=Msa1369930-mRNA-1:cds;Parent=Msa1369930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
