Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476080 | XP_013461821.1 | 97.121 | 521 | 13 | 1 | 1 | 521 | 1 | 519 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476080 | sp|O48651|SQE1_PANGI | 77.649 | 519 | 112 | 1 | 1 | 519 | 23 | 537 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476080 | Q8GSM8 | 97.121 | 521 | 13 | 1 | 1 | 521 | 1 | 519 | 0.0 | 1033 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0476080 | Msa0519770 | 0.961398 | 1.177838e-119 | -8.615850e-47 |
| Msa0476080 | Msa0519850 | 0.985312 | 3.540965e-163 | -8.615850e-47 |
| Msa0476080 | Msa1369930 | 0.833040 | 6.700981e-56 | -8.615850e-47 |
| Msa0476080 | Msa1466790 | 0.921780 | 2.304022e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476080 | MtrunA17_Chr3g0135201 | 97.121 | 521 | 13 | 1 | 1 | 521 | 1 | 519 | 0.0 | 1033 |
| Msa0476080 | MtrunA17_Chr1g0152061 | 82.759 | 522 | 86 | 1 | 2 | 519 | 1 | 522 | 0.0 | 876 |
| Msa0476080 | MtrunA17_Chr4g0049291 | 79.264 | 516 | 102 | 3 | 8 | 519 | 9 | 523 | 0.0 | 813 |
| Msa0476080 | MtrunA17_Chr6g0463581 | 77.041 | 196 | 45 | 0 | 323 | 518 | 1 | 196 | 1.14e-105 | 314 |
| Msa0476080 | MtrunA17_Chr6g0463781 | 74.054 | 185 | 48 | 0 | 303 | 487 | 21 | 205 | 2.29e-96 | 291 |
| Msa0476080 | MtrunA17_Chr6g0463601 | 63.529 | 170 | 59 | 2 | 10 | 176 | 12 | 181 | 6.52e-69 | 219 |
| Msa0476080 | MtrunA17_Chr6g0463751 | 74.747 | 99 | 25 | 0 | 78 | 176 | 38 | 136 | 8.01e-51 | 170 |
| Msa0476080 | MtrunA17_Chr5g0411591 | 80.952 | 84 | 16 | 0 | 396 | 479 | 35 | 118 | 5.09e-41 | 144 |
| Msa0476080 | MtrunA17_Chr7g0240231 | 77.381 | 84 | 19 | 0 | 394 | 477 | 33 | 116 | 1.96e-37 | 134 |
| Msa0476080 | MtrunA17_Chr6g0463771 | 73.563 | 87 | 22 | 1 | 229 | 314 | 11 | 97 | 3.34e-36 | 131 |
| Msa0476080 | MtrunA17_Chr6g0463591 | 80.263 | 76 | 14 | 1 | 229 | 303 | 5 | 80 | 4.72e-35 | 126 |
| Msa0476080 | MtrunA17_Chr6g0463761 | 74.138 | 58 | 15 | 0 | 173 | 230 | 24 | 81 | 2.61e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476080 | AT1G58440.1 | 76.436 | 505 | 115 | 2 | 17 | 519 | 21 | 523 | 0.0 | 801 |
| Msa0476080 | AT4G37760.1 | 76.031 | 509 | 116 | 3 | 12 | 517 | 10 | 515 | 0.0 | 768 |
| Msa0476080 | AT2G22830.1 | 74.314 | 510 | 122 | 2 | 17 | 519 | 78 | 585 | 0.0 | 764 |
| Msa0476080 | AT5G24150.1 | 52.229 | 471 | 222 | 2 | 54 | 521 | 43 | 513 | 2.58e-179 | 514 |
| Msa0476080 | AT5G24160.1 | 47.002 | 517 | 259 | 4 | 9 | 521 | 9 | 514 | 1.03e-173 | 500 |
| Msa0476080 | AT5G24150.2 | 53.333 | 435 | 200 | 2 | 54 | 485 | 43 | 477 | 1.63e-168 | 486 |
| Msa0476080 | AT5G24140.1 | 45.298 | 521 | 269 | 6 | 1 | 516 | 1 | 510 | 9.51e-161 | 467 |
| Msa0476080 | AT5G24160.3 | 48.284 | 437 | 222 | 3 | 89 | 521 | 1 | 437 | 3.40e-152 | 442 |
| Msa0476080 | AT5G24160.2 | 47.179 | 390 | 191 | 4 | 9 | 394 | 9 | 387 | 3.38e-126 | 374 |
| Msa0476080 | AT5G24155.2 | 71.930 | 57 | 16 | 0 | 58 | 114 | 49 | 105 | 7.22e-22 | 91.3 |
| Msa0476080 | AT5G24155.3 | 66.667 | 63 | 21 | 0 | 58 | 120 | 49 | 111 | 1.07e-21 | 90.9 |
| Msa0476080 | AT5G24155.1 | 71.930 | 57 | 16 | 0 | 58 | 114 | 49 | 105 | 1.11e-21 | 90.9 |
Find 171 sgRNAs with CRISPR-Local
Find 395 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACCAGTCTCTTTGCTTTC+AGG | 0.135797 | 3_3:+79813943 | Msa0476080:CDS |
| TCAACAAAAGTTAATGTATT+TGG | 0.167062 | 3_3:-79814500 | None:intergenic |
| GCGAATTTCTGTACTACTTA+TGG | 0.178656 | 3_3:-79813144 | None:intergenic |
| TGCTCCTGCCAACGTATTTA+TGG | 0.226048 | 3_3:-79813824 | None:intergenic |
| ATTGAAACGTAAACATTATA+TGG | 0.228307 | 3_3:+79814375 | Msa0476080:three_prime_UTR |
| TGGTCGACCCCTACGGTTTC+GGG | 0.237985 | 3_3:+79809679 | Msa0476080:CDS |
| GATTCCTTCTGCCTTAATAA+TGG | 0.268227 | 3_3:-79814205 | None:intergenic |
| AATCATCTTGCCCATTATTA+AGG | 0.268603 | 3_3:+79814194 | Msa0476080:CDS |
| GAAGAGAATGGTACAATTAA+AGG | 0.280394 | 3_3:+79812356 | Msa0476080:CDS |
| TTCTTCGCTGTCGCGATATA+TGG | 0.282244 | 3_3:+79814000 | Msa0476080:CDS |
| CGCTGTCTGGTTGATGTTCC+TGG | 0.295098 | 3_3:+79813164 | Msa0476080:CDS |
| TAATAAGCTGGAACAGTTGC+AGG | 0.299507 | 3_3:-79814243 | None:intergenic |
| GGACGGAGGGAGTACATTGC+TGG | 0.318839 | 3_3:+79814544 | Msa0476080:three_prime_UTR |
| CGAATTTCTGTACTACTTAT+GGG | 0.320042 | 3_3:-79813143 | None:intergenic |
| ATTCCGATCCATATGCGTTT+AGG | 0.322929 | 3_3:-79814054 | None:intergenic |
| GCTTTGATTATCTGAGTCTT+GGG | 0.327261 | 3_3:+79813905 | Msa0476080:CDS |
| TTCCGATCCATATGCGTTTA+GGG | 0.328350 | 3_3:-79814053 | None:intergenic |
| ATTTCACCATTGGAAATAGA+TGG | 0.333959 | 3_3:-79813197 | None:intergenic |
| TGCTTTGATTATCTGAGTCT+TGG | 0.344637 | 3_3:+79813904 | Msa0476080:CDS |
| ATTCCTTCTGCCTTAATAAT+GGG | 0.347292 | 3_3:-79814204 | None:intergenic |
| ATCTATTTCCAATGGTGAAA+TGG | 0.351927 | 3_3:+79813199 | Msa0476080:CDS |
| ATGGTCGACCCCTACGGTTT+CGG | 0.353513 | 3_3:+79809678 | Msa0476080:CDS |
| TACCTTACGCAAGGTATAGA+AGG | 0.355066 | 3_3:-79813649 | None:intergenic |
| ATTGATGCTCAGCAAGTGTT+TGG | 0.355900 | 3_3:+79811539 | Msa0476080:CDS |
| AACATGCGCCATCCCCTAAC+CGG | 0.356195 | 3_3:+79813522 | Msa0476080:CDS |
| CCCAAAATATAAGCGAAAAT+TGG | 0.361641 | 3_3:-79814523 | None:intergenic |
| ATGATATCAACGTCGCCGTT+TGG | 0.370779 | 3_3:-79809834 | None:intergenic |
| TTCCTTCCCCTAAACGCATA+TGG | 0.381663 | 3_3:+79814046 | Msa0476080:CDS |
| AAAATGTGAAAACAAAATTC+AGG | 0.386876 | 3_3:-79814588 | None:intergenic |
| CTCCCATCAGAAGGGCTCCC+GGG | 0.391611 | 3_3:-79813491 | None:intergenic |
| AAATCATGGTCACGTCATAC+TGG | 0.391765 | 3_3:+79813094 | Msa0476080:CDS |
| AATAATGGGCAAGATGATTC+CGG | 0.399527 | 3_3:-79814190 | None:intergenic |
| TTGATTGAGCTGGGACTTGA+AGG | 0.413598 | 3_3:+79811348 | Msa0476080:CDS |
| AGGGCTCCCGGGGTGGGATA+AGG | 0.421125 | 3_3:-79813480 | None:intergenic |
| AAAGGCTAGGTGCATCATTC+AGG | 0.421944 | 3_3:-79813611 | None:intergenic |
| TCGGCTGGCATGCTTCTGTT+TGG | 0.423353 | 3_3:-79813456 | None:intergenic |
| AGTGTAAGCGAGAGCGGAGC+CGG | 0.434336 | 3_3:-79809877 | None:intergenic |
| AATGAACCAGACCGAATTGT+TGG | 0.440764 | 3_3:+79811294 | Msa0476080:CDS |
| TCTCCCATCAGAAGGGCTCC+CGG | 0.444941 | 3_3:-79813492 | None:intergenic |
| TTGATGCTCAGCAAGTGTTT+GGG | 0.446101 | 3_3:+79811540 | Msa0476080:CDS |
| AAAACAATGCTAGCTCATCT+TGG | 0.446371 | 3_3:-79814329 | None:intergenic |
| CATCAGAAGGGCTCCCGGGG+TGG | 0.453110 | 3_3:-79813487 | None:intergenic |
| TCCGCTCTCGCTTACACTCT+CGG | 0.457292 | 3_3:+79809882 | Msa0476080:CDS |
| ATACTTTGCCATTTCACCAT+TGG | 0.458675 | 3_3:-79813207 | None:intergenic |
| TAGTACAGAAATTCGCTGTC+TGG | 0.460268 | 3_3:+79813151 | Msa0476080:CDS |
| TAAATACAAATTTATGCAGC+TGG | 0.461053 | 3_3:-79814276 | None:intergenic |
| ATGAAAGCAGCATGAAGCTC+AGG | 0.462032 | 3_3:-79813399 | None:intergenic |
| CTGGAAGAAGCTTTCACAAT+GGG | 0.462566 | 3_3:+79811633 | Msa0476080:CDS |
| CCGTTCTCTTTGTAATCCTA+AGG | 0.466319 | 3_3:+79812466 | Msa0476080:CDS |
| ATTGTCGGTGCTGGTGTCGC+CGG | 0.469469 | 3_3:+79809858 | Msa0476080:CDS |
| TGTTTGGCATTGTCCTTATG+TGG | 0.479932 | 3_3:-79813440 | None:intergenic |
| CACCCCGGGAGCCCTTCTGA+TGG | 0.480539 | 3_3:+79813488 | Msa0476080:CDS |
| CTTTGATTATCTGAGTCTTG+GGG | 0.481559 | 3_3:+79813906 | Msa0476080:CDS |
| TATGTTATGTAGTGTACGGT+TGG | 0.482947 | 3_3:+79812307 | Msa0476080:intron |
| AAATTCTTGCAAGACGCAAA+GGG | 0.485245 | 3_3:+79814643 | Msa0476080:three_prime_UTR |
| GGTTGATGTTCCTGGTCAGA+AGG | 0.486415 | 3_3:+79813172 | Msa0476080:CDS |
| ATCAGAAGGGCTCCCGGGGT+GGG | 0.488056 | 3_3:-79813486 | None:intergenic |
| CACGAGACTCTCTTATCCCT+TGG | 0.490385 | 3_3:+79811589 | Msa0476080:CDS |
| TGTACCATTCTCTTCGAGTA+GGG | 0.493101 | 3_3:-79812348 | None:intergenic |
| GTATTTATGGTGGATGCCAC+TGG | 0.494542 | 3_3:-79813811 | None:intergenic |
| AGCGGTGGTGGTTGTTGCAT+CGG | 0.495786 | 3_3:-79809769 | None:intergenic |
| CTATCTCAAATTGATTGAGC+TGG | 0.497355 | 3_3:+79811338 | Msa0476080:CDS |
| GTAGCAACTCGCCAACAATT+CGG | 0.499442 | 3_3:-79811305 | None:intergenic |
| ACATGCGCCATCCCCTAACC+GGG | 0.501803 | 3_3:+79813523 | Msa0476080:CDS |
| AACTCGCCAACAATTCGGTC+TGG | 0.508143 | 3_3:-79811300 | None:intergenic |
| CCTCTTACCATTGTTTGTGA+TGG | 0.509647 | 3_3:+79812425 | Msa0476080:CDS |
| CTTATGGGATAGAACAGAAC+CGG | 0.511065 | 3_3:-79813128 | None:intergenic |
| GTACAAAATGAAAGATGCTC+AGG | 0.511078 | 3_3:+79812385 | Msa0476080:CDS |
| CCATCACAAACAATGGTAAG+AGG | 0.513886 | 3_3:-79812425 | None:intergenic |
| GCCGATCCTTATCCCACCCC+GGG | 0.514148 | 3_3:+79813474 | Msa0476080:CDS |
| CTCAAAATGGTCGACCCCTA+CGG | 0.514180 | 3_3:+79809672 | Msa0476080:exon |
| TTGCAGGGAAGAACATTTGA+CGG | 0.515683 | 3_3:-79814227 | None:intergenic |
| TGGTGGTTGTTGCATCGGAA+TGG | 0.516635 | 3_3:-79809764 | None:intergenic |
| TCCACCATAAATACGTTGGC+AGG | 0.517019 | 3_3:+79813820 | Msa0476080:CDS |
| GAAGACAGTGGTAGCTCCAC+AGG | 0.517798 | 3_3:+79813232 | Msa0476080:CDS |
| ATCCATATGCGTTTAGGGGA+AGG | 0.518020 | 3_3:-79814048 | None:intergenic |
| TTGTACCATTCTCTTCGAGT+AGG | 0.520014 | 3_3:-79812349 | None:intergenic |
| GCAAGGTATAGAAGGATTCA+AGG | 0.524109 | 3_3:-79813641 | None:intergenic |
| ACCCCGGGAGCCCTTCTGAT+GGG | 0.525384 | 3_3:+79813489 | Msa0476080:CDS |
| CAGTGGACAAAGGCCACATA+AGG | 0.527014 | 3_3:+79813427 | Msa0476080:CDS |
| TCCCGGGGTGGGATAAGGAT+CGG | 0.530492 | 3_3:-79813475 | None:intergenic |
| GACGTTGATATCATCATTGT+CGG | 0.531291 | 3_3:+79809843 | Msa0476080:CDS |
| ATTAAAAGATCTGCATTCTC+CGG | 0.538231 | 3_3:-79809811 | None:intergenic |
| AGCCGATCCTTATCCCACCC+CGG | 0.538389 | 3_3:+79813473 | Msa0476080:CDS |
| GAAATGAAGAACCAAACTCA+GGG | 0.539815 | 3_3:-79813980 | None:intergenic |
| GATATCATCATTGTCGGTGC+TGG | 0.540205 | 3_3:+79809849 | Msa0476080:CDS |
| GGAGGTGCTCTATAATAAGC+TGG | 0.541029 | 3_3:-79814255 | None:intergenic |
| ATGCGTTTAGGGGAAGGAAA+TGG | 0.541806 | 3_3:-79814042 | None:intergenic |
| TTGCCCATTATTAAGGCAGA+AGG | 0.548504 | 3_3:+79814201 | Msa0476080:CDS |
| AACACAACACAAACACAGCA+CGG | 0.549311 | 3_3:+79809610 | Msa0476080:five_prime_UTR |
| ATCCTTCTATACCTTGCGTA+AGG | 0.552810 | 3_3:+79813647 | Msa0476080:CDS |
| GCCGAGAGTGTAAGCGAGAG+CGG | 0.554979 | 3_3:-79809883 | None:intergenic |
| AATCATGGTCACGTCATACT+GGG | 0.555739 | 3_3:+79813095 | Msa0476080:CDS |
| GTGATCCACCCGAAACCGTA+GGG | 0.555940 | 3_3:-79809687 | None:intergenic |
| CAAATTCTTGCAAGACGCAA+AGG | 0.557420 | 3_3:+79814642 | Msa0476080:three_prime_UTR |
| TCCCATCAGAAGGGCTCCCG+GGG | 0.560065 | 3_3:-79813490 | None:intergenic |
| AGAAATGAAGAACCAAACTC+AGG | 0.560990 | 3_3:-79813981 | None:intergenic |
| CATTCAATGTTAGTACATGT+TGG | 0.561288 | 3_3:-79814701 | None:intergenic |
| TATCTCAAATTGATTGAGCT+GGG | 0.564234 | 3_3:+79811339 | Msa0476080:CDS |
| AGATCTGCATTCTCCGGTGG+CGG | 0.564343 | 3_3:-79809805 | None:intergenic |
| AAGTTTCACTCAGATATCGC+TGG | 0.567766 | 3_3:+79811614 | Msa0476080:CDS |
| GGGGTGGGATAAGGATCGGC+TGG | 0.568649 | 3_3:-79813471 | None:intergenic |
| AATCCTGAAAGCAAAGAGAC+TGG | 0.569045 | 3_3:-79813946 | None:intergenic |
| TCCCCTAAACGCATATGGAT+CGG | 0.569073 | 3_3:+79814051 | Msa0476080:CDS |
| GACGGAGGGAGTACATTGCT+GGG | 0.569413 | 3_3:+79814545 | Msa0476080:three_prime_UTR |
| TGCTGCTTTCATAGCTGCAG+TGG | 0.570794 | 3_3:+79813410 | Msa0476080:CDS |
| TGCCACAGTCATCCCACCCC+CGG | 0.571168 | 3_3:-79813541 | None:intergenic |
| AAGGTTCCATCTATTTCCAA+TGG | 0.571490 | 3_3:+79813191 | Msa0476080:CDS |
| GCATCATTCAGGTCAAGTAA+AGG | 0.573325 | 3_3:-79813600 | None:intergenic |
| ATCAATTTGAGATAGCCTCC+AGG | 0.576174 | 3_3:-79811330 | None:intergenic |
| TTCATAGCTGCAGTGGACAA+AGG | 0.578009 | 3_3:+79813417 | Msa0476080:CDS |
| GTTGGCGAGTTGCTACAACC+TGG | 0.579187 | 3_3:+79811312 | Msa0476080:CDS |
| ACTTCCCTACTCGAAGAGAA+TGG | 0.579687 | 3_3:+79812344 | Msa0476080:CDS |
| GTTGGCAGGAGCACTTTACA+AGG | 0.579726 | 3_3:+79813834 | Msa0476080:CDS |
| AACTAAGCCAACAAAACAAG+AGG | 0.581348 | 3_3:-79813045 | None:intergenic |
| AGGATTCAAGGTATTTACAA+AGG | 0.585424 | 3_3:-79813629 | None:intergenic |
| TGAAAGCAGCATGAAGCTCA+GGG | 0.587959 | 3_3:-79813398 | None:intergenic |
| GGATAGAACAGAACCGGTGA+AGG | 0.588623 | 3_3:-79813122 | None:intergenic |
| GAGAACATTACAACCGCCAC+CGG | 0.589265 | 3_3:+79809792 | Msa0476080:CDS |
| TTTGATTATCTGAGTCTTGG+GGG | 0.589666 | 3_3:+79813907 | Msa0476080:CDS |
| GAACTTCCATGTGCAAATCA+TGG | 0.591041 | 3_3:+79813080 | Msa0476080:CDS |
| TCAAGGTATTTACAAAGGCT+AGG | 0.592034 | 3_3:-79813624 | None:intergenic |
| GCTGTCGCGATATATGGTGT+TGG | 0.596308 | 3_3:+79814006 | Msa0476080:CDS |
| TGTTATTATTGCAGATTGTG+TGG | 0.599886 | 3_3:+79811511 | Msa0476080:intron |
| TGAATGCATCTCCCATCAGA+AGG | 0.601414 | 3_3:-79813500 | None:intergenic |
| AAACTCAAAACTCTTTGCGT+CGG | 0.601833 | 3_3:-79809646 | None:intergenic |
| TGTAATGTTCTCAGCGGTGG+TGG | 0.602589 | 3_3:-79809781 | None:intergenic |
| TGTAGTGTACGGTTGGAGCA+AGG | 0.602718 | 3_3:+79812314 | Msa0476080:intron |
| CTTGCAAGACGCAAAGGGGA+CGG | 0.605588 | 3_3:+79814648 | Msa0476080:three_prime_UTR |
| TCTCGCTTACACTCTCGGCA+AGG | 0.608886 | 3_3:+79809887 | Msa0476080:CDS |
| GAAACAACCATCACAAACAA+TGG | 0.613084 | 3_3:-79812432 | None:intergenic |
| TGTGATCCACCCGAAACCGT+AGG | 0.613578 | 3_3:-79809688 | None:intergenic |
| AATAAGCTGGAACAGTTGCA+GGG | 0.614063 | 3_3:-79814242 | None:intergenic |
| TTAAGGAATTACCTTACGCA+AGG | 0.617927 | 3_3:-79813658 | None:intergenic |
| GACGGAGGGAGTACTTGGGA+AGG | 0.618544 | 3_3:-79811691 | None:intergenic |
| ATCTAATGTAGGATGGACGA+CGG | 0.624069 | 3_3:+79811247 | Msa0476080:intron |
| TCCGATCCATATGCGTTTAG+GGG | 0.629892 | 3_3:-79814052 | None:intergenic |
| ATAGATGGAACCTTCTGACC+AGG | 0.631618 | 3_3:-79813182 | None:intergenic |
| GAAATTGTAGAGTGCAGCGA+GGG | 0.631962 | 3_3:-79809724 | None:intergenic |
| TTACGTCCAGCGAAGAGAGA+GGG | 0.632879 | 3_3:+79809585 | Msa0476080:five_prime_UTR |
| GAGTGCAGCGAGGGTGATGA+GGG | 0.633052 | 3_3:-79809715 | None:intergenic |
| GAATGCATCTCCCATCAGAA+GGG | 0.640289 | 3_3:-79813499 | None:intergenic |
| TCTAATGTAGGATGGACGAC+GGG | 0.640302 | 3_3:+79811248 | Msa0476080:intron |
| CCTTAGGATTACAAAGAGAA+CGG | 0.642410 | 3_3:-79812466 | None:intergenic |
| AGAGTGCAGCGAGGGTGATG+AGG | 0.642797 | 3_3:-79809716 | None:intergenic |
| GAATACGTCTTTAAAAGTCA+AGG | 0.643454 | 3_3:+79814301 | Msa0476080:three_prime_UTR |
| GGCATCCACCATAAATACGT+TGG | 0.644019 | 3_3:+79813816 | Msa0476080:CDS |
| ATACAAATTTATGCAGCTGG+AGG | 0.648738 | 3_3:-79814273 | None:intergenic |
| GAGGGAGTACTTGGGAAGGG+AGG | 0.650679 | 3_3:-79811687 | None:intergenic |
| AAAAGATCTGCATTCTCCGG+TGG | 0.650741 | 3_3:-79809808 | None:intergenic |
| GGTTGTAATGTTCTCAGCGG+TGG | 0.651335 | 3_3:-79809784 | None:intergenic |
| ATTACGTCCAGCGAAGAGAG+AGG | 0.654846 | 3_3:+79809584 | Msa0476080:five_prime_UTR |
| ACGGAGGGAGTACTTGGGAA+GGG | 0.655483 | 3_3:-79811690 | None:intergenic |
| TCGACCCCTACGGTTTCGGG+TGG | 0.658583 | 3_3:+79809682 | Msa0476080:CDS |
| AAAGCAGCATGAAGCTCAGG+GGG | 0.659168 | 3_3:-79813396 | None:intergenic |
| CATGCGCCATCCCCTAACCG+GGG | 0.661135 | 3_3:+79813524 | Msa0476080:CDS |
| GGCAAAGTATTTGAAGACAG+TGG | 0.664630 | 3_3:+79813220 | Msa0476080:CDS |
| ACTAAGCCAACAAAACAAGA+GGG | 0.667139 | 3_3:-79813044 | None:intergenic |
| ATGCGCCATCCCCTAACCGG+GGG | 0.670116 | 3_3:+79813525 | Msa0476080:CDS |
| TCCTGCCAACGTATTTATGG+TGG | 0.676661 | 3_3:-79813821 | None:intergenic |
| AATTCTTGCAAGACGCAAAG+GGG | 0.677732 | 3_3:+79814644 | Msa0476080:three_prime_UTR |
| CATACTGGGAGATCCTTCAC+CGG | 0.681263 | 3_3:+79813109 | Msa0476080:CDS |
| AATGAAGAACCAAACTCAGG+GGG | 0.690809 | 3_3:-79813978 | None:intergenic |
| GGCGAGTTGCTACAACCTGG+AGG | 0.693043 | 3_3:+79811315 | Msa0476080:CDS |
| GCTGGAAGAAGCTTTCACAA+TGG | 0.694395 | 3_3:+79811632 | Msa0476080:CDS |
| GGCGGTTGTAATGTTCTCAG+CGG | 0.696843 | 3_3:-79809787 | None:intergenic |
| GAAAGCAGCATGAAGCTCAG+GGG | 0.705422 | 3_3:-79813397 | None:intergenic |
| TGATCCACCCGAAACCGTAG+GGG | 0.715386 | 3_3:-79809686 | None:intergenic |
| ACGTGACCATGATTTGCACA+TGG | 0.721204 | 3_3:-79813086 | None:intergenic |
| AAATGAAGAACCAAACTCAG+GGG | 0.723277 | 3_3:-79813979 | None:intergenic |
| GGAAATTGTAGAGTGCAGCG+AGG | 0.733685 | 3_3:-79809725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTATATATTAATAAGT+TGG | + | chr3_3:79810615-79810634 | Msa0476080:intron | 10.0% |
| !! | ATTCAAAAGAAAAAAAATTA+AGG | - | chr3_3:79813705-79813724 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTTTGAATTAAA+AGG | + | chr3_3:79813709-79813728 | Msa0476080:intron | 10.0% |
| !!! | ATTTTATTTGAATAAATTGT+TGG | + | chr3_3:79814119-79814138 | Msa0476080:intron | 10.0% |
| !! | TAAACAAATGTTAATATGAA+TGG | - | chr3_3:79809949-79809968 | None:intergenic | 15.0% |
| !!! | TAACTTTCAAATTTCTATTT+TGG | + | chr3_3:79810221-79810240 | Msa0476080:intron | 15.0% |
| !! | CCAAAATATAATACTTAAAA+TGG | - | chr3_3:79810278-79810297 | None:intergenic | 15.0% |
| !!! | CCATTTTAAGTATTATATTT+TGG | + | chr3_3:79810275-79810294 | Msa0476080:intron | 15.0% |
| !! | TAAAATAATTGTAATTGTAG+CGG | + | chr3_3:79810379-79810398 | Msa0476080:intron | 15.0% |
| !! | TTAATATTTGAACTGTAAAT+AGG | - | chr3_3:79810744-79810763 | None:intergenic | 15.0% |
| !! | ATTTACAGTTCAAATATTAA+TGG | + | chr3_3:79810744-79810763 | Msa0476080:intron | 15.0% |
| !!! | GATTTTTTTGCTTATAATTT+AGG | - | chr3_3:79811716-79811735 | None:intergenic | 15.0% |
| !!! | TTTTGAAATAACATAAAAGT+TGG | - | chr3_3:79811774-79811793 | None:intergenic | 15.0% |
| !!! | ATTTGCATTTAATTTTACTT+TGG | - | chr3_3:79811809-79811828 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTGTGTTTTTCT+TGG | - | chr3_3:79811916-79811935 | None:intergenic | 15.0% |
| !! | AACTTTATATCAGAAAAAAA+CGG | - | chr3_3:79812043-79812062 | None:intergenic | 15.0% |
| !! | TTATGAATTATGAATGGAAT+GGG | + | chr3_3:79810121-79810140 | Msa0476080:intron | 20.0% |
| !! | TAATACAAAGTGATATTATC+TGG | - | chr3_3:79810303-79810322 | None:intergenic | 20.0% |
| !! | AATTAAGGGATATTTATACA+GGG | - | chr3_3:79810964-79810983 | None:intergenic | 20.0% |
| !!! | TAGTTTTCCATATTCATTTT+AGG | + | chr3_3:79811009-79811028 | Msa0476080:intron | 20.0% |
| !!! | AGTTTTCCATATTCATTTTA+GGG | + | chr3_3:79811010-79811029 | Msa0476080:intron | 20.0% |
| !!! | TTTTTGCTTATAATTTAGGA+CGG | - | chr3_3:79811712-79811731 | None:intergenic | 20.0% |
| !!! | GTCTTTTTTGCTTATATTTT+GGG | - | chr3_3:79811752-79811771 | None:intergenic | 20.0% |
| !!! | TTCTTATTGGTTAATGATTA+TGG | - | chr3_3:79811863-79811882 | None:intergenic | 20.0% |
| !! | GATGTAAAAACAATTCTTAT+TGG | - | chr3_3:79811876-79811895 | None:intergenic | 20.0% |
| !!! | TGTGTTTTTTGCTTATAAAT+TGG | + | chr3_3:79811979-79811998 | Msa0476080:intron | 20.0% |
| !!! | GTGTTTTTTGCTTATAAATT+GGG | + | chr3_3:79811980-79811999 | Msa0476080:intron | 20.0% |
| !! | TTTATTATAATCAATGACCT+TGG | - | chr3_3:79812146-79812165 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTATGTAGTGTA+CGG | + | chr3_3:79812303-79812322 | Msa0476080:intron | 20.0% |
| !! | TGTGAAATCATTTAATCTTA+TGG | - | chr3_3:79812890-79812909 | None:intergenic | 20.0% |
| !!! | ACAAGTACAAATTGTTTTTT+AGG | + | chr3_3:79813275-79813294 | Msa0476080:intron | 20.0% |
| !! | ATTGAAACGTAAACATTATA+TGG | + | chr3_3:79814375-79814394 | Msa0476080:three_prime_UTR | 20.0% |
| !!! | CTTTTAAGTTTGATTCTTTA+TGG | + | chr3_3:79814398-79814417 | Msa0476080:three_prime_UTR | 20.0% |
| !! | TCAACAAAAGTTAATGTATT+TGG | - | chr3_3:79814503-79814522 | None:intergenic | 20.0% |
| !! | AAAATGTGAAAACAAAATTC+AGG | - | chr3_3:79814591-79814610 | None:intergenic | 20.0% |
| ! | AATTACGAAGAAATAGGAAT+GGG | - | chr3_3:79809922-79809941 | None:intergenic | 25.0% |
| ! | AAATTACGAAGAAATAGGAA+TGG | - | chr3_3:79809923-79809942 | None:intergenic | 25.0% |
| ! | ACAAATGTTAATATGAATGG+TGG | - | chr3_3:79809946-79809965 | None:intergenic | 25.0% |
| !! | AAATTACTGTGTTTTGTATC+TGG | + | chr3_3:79809991-79810010 | Msa0476080:intron | 25.0% |
| ! | TACCAGTTATGAATTATGAA+TGG | + | chr3_3:79810115-79810134 | Msa0476080:intron | 25.0% |
| ! | TTCCATTCATAATTCATAAC+TGG | - | chr3_3:79810120-79810139 | None:intergenic | 25.0% |
| ! | GTTATGAATTATGAATGGAA+TGG | + | chr3_3:79810120-79810139 | Msa0476080:intron | 25.0% |
| ! | TATGAATTATGAATGGAATG+GGG | + | chr3_3:79810122-79810141 | Msa0476080:intron | 25.0% |
| ! | TTAGAAATGACAACATTAGA+TGG | + | chr3_3:79810450-79810469 | Msa0476080:intron | 25.0% |
| !!! | AGTTAGTTTTAGTTAGTTTG+AGG | + | chr3_3:79810880-79810899 | Msa0476080:intron | 25.0% |
| ! | CAATTAAGGGATATTTATAC+AGG | - | chr3_3:79810965-79810984 | None:intergenic | 25.0% |
| ! | CTGTATAAATATCCCTTAAT+TGG | + | chr3_3:79810963-79810982 | Msa0476080:intron | 25.0% |
| !! | GTTTTCCATATTCATTTTAG+GGG | + | chr3_3:79811011-79811030 | Msa0476080:intron | 25.0% |
| ! | AAAAAGATAGGAAAAAGAAG+AGG | - | chr3_3:79811103-79811122 | None:intergenic | 25.0% |
| ! | GCATAACTATTATCTAATGT+AGG | + | chr3_3:79811236-79811255 | Msa0476080:intron | 25.0% |
| ! | AACTATTATCTAATGTAGGA+TGG | + | chr3_3:79811240-79811259 | Msa0476080:intron | 25.0% |
| !! | TGTTCTAAGTGAAGTTAAAA+AGG | - | chr3_3:79811469-79811488 | None:intergenic | 25.0% |
| ! | TAACTTCACTTAGAACAAAA+AGG | + | chr3_3:79811472-79811491 | Msa0476080:intron | 25.0% |
| ! | AACTTCACTTAGAACAAAAA+GGG | + | chr3_3:79811473-79811492 | Msa0476080:intron | 25.0% |
| !!! | GGTCTTTTTTGCTTATATTT+TGG | - | chr3_3:79811753-79811772 | None:intergenic | 25.0% |
| !! | TTTTCTTGGAATAAGTTTCA+TGG | - | chr3_3:79811902-79811921 | None:intergenic | 25.0% |
| ! | AACAAAAACATAGTAGTTTG+AGG | - | chr3_3:79811940-79811959 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATTGGGA+CGG | + | chr3_3:79811984-79812003 | Msa0476080:intron | 25.0% |
| ! | GTGGAAATAATAGACAAAAT+AGG | + | chr3_3:79812579-79812598 | Msa0476080:intron | 25.0% |
| ! | AATAGACAAAATAGGATGTT+TGG | + | chr3_3:79812587-79812606 | Msa0476080:intron | 25.0% |
| ! | ATAGACAAAATAGGATGTTT+GGG | + | chr3_3:79812588-79812607 | Msa0476080:intron | 25.0% |
| ! | AGATAGTTGTATATCAACTA+AGG | + | chr3_3:79812629-79812648 | Msa0476080:intron | 25.0% |
| !!! | TATATCAACTAAGGTGTTTT+GGG | + | chr3_3:79812638-79812657 | Msa0476080:intron | 25.0% |
| ! | AAGACTTGAGGTAAATTATA+TGG | + | chr3_3:79812761-79812780 | Msa0476080:intron | 25.0% |
| ! | AACGTTATGATATTCTATCA+TGG | - | chr3_3:79812800-79812819 | None:intergenic | 25.0% |
| !!! | TGGTTGTTTTATGATGTTAT+AGG | + | chr3_3:79812861-79812880 | Msa0476080:intron | 25.0% |
| ! | GTGTAAAGTAATTAAATGCT+AGG | - | chr3_3:79813301-79813320 | None:intergenic | 25.0% |
| ! | AAAAAATTAAGGTGAAGAAG+TGG | - | chr3_3:79813694-79813713 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTGCAATTAAAGT+GGG | - | chr3_3:79814149-79814168 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTTGCAATTAAAG+TGG | - | chr3_3:79814150-79814169 | None:intergenic | 25.0% |
| ! | TAAATACAAATTTATGCAGC+TGG | - | chr3_3:79814279-79814298 | None:intergenic | 25.0% |
| !! | GTTTTCAGTTAGAAATCTAA+CGG | + | chr3_3:79814347-79814366 | Msa0476080:three_prime_UTR | 25.0% |
| !!! | TTTTTGTTTACATTTTGGGA+CGG | - | chr3_3:79814441-79814460 | None:intergenic | 25.0% |
| !!! | CCGATTTTTGTTTACATTTT+GGG | - | chr3_3:79814445-79814464 | None:intergenic | 25.0% |
| ! | CCCAAAATGTAAACAAAAAT+CGG | + | chr3_3:79814442-79814461 | Msa0476080:three_prime_UTR | 25.0% |
| !!! | ACCGATTTTTGTTTACATTT+TGG | - | chr3_3:79814446-79814465 | None:intergenic | 25.0% |
| !! | ACCAATTTTCGCTTATATTT+TGG | + | chr3_3:79814522-79814541 | Msa0476080:three_prime_UTR | 25.0% |
| !! | CCAATTTTCGCTTATATTTT+GGG | + | chr3_3:79814523-79814542 | Msa0476080:three_prime_UTR | 25.0% |
| !! | TTGTTTTCACATTTTATAGC+TGG | + | chr3_3:79814596-79814615 | Msa0476080:three_prime_UTR | 25.0% |
| !!! | TTTTGAGTTTCCTCTCAAAA+TGG | + | chr3_3:79809659-79809678 | Msa0476080:exon | 30.0% |
| ! | AATGGTTTTTACGAGAGAAA+AGG | - | chr3_3:79809749-79809768 | None:intergenic | 30.0% |
| ATTAAAAGATCTGCATTCTC+CGG | - | chr3_3:79809814-79809833 | None:intergenic | 30.0% | |
| ! | TGCAGATCTTTTAATCCAAA+CGG | + | chr3_3:79809819-79809838 | Msa0476080:CDS | 30.0% |
| AACAGATTTAACCATGGATA+CGG | - | chr3_3:79810046-79810065 | None:intergenic | 30.0% | |
| ATGGTTAAATCTGTTGTTGT+GGG | + | chr3_3:79810051-79810070 | Msa0476080:intron | 30.0% | |
| !! | AGACATATAGGTTTTGTGTA+AGG | + | chr3_3:79810511-79810530 | Msa0476080:intron | 30.0% |
| GTAAGGAGAATTAGATCAAA+TGG | + | chr3_3:79810528-79810547 | Msa0476080:intron | 30.0% | |
| CATTGATGAACTCCAATTAA+GGG | - | chr3_3:79810978-79810997 | None:intergenic | 30.0% | |
| TCATTGATGAACTCCAATTA+AGG | - | chr3_3:79810979-79810998 | None:intergenic | 30.0% | |
| ! | GTTTTCCCCTAAAATGAATA+TGG | - | chr3_3:79811019-79811038 | None:intergenic | 30.0% |
| TTAAAAACATCCAACATGTC+AGG | - | chr3_3:79811172-79811191 | None:intergenic | 30.0% | |
| TATCTCAAATTGATTGAGCT+GGG | + | chr3_3:79811339-79811358 | Msa0476080:CDS | 30.0% | |
| TTTCTTTCACTTCTTGATTC+TGG | + | chr3_3:79811405-79811424 | Msa0476080:intron | 30.0% | |
| TGTTATTATTGCAGATTGTG+TGG | + | chr3_3:79811511-79811530 | Msa0476080:intron | 30.0% | |
| TGATTATGGAGAGAATAGAA+AGG | - | chr3_3:79811849-79811868 | None:intergenic | 30.0% | |
| AAAAACGGAATGTGAAGTAA+AGG | - | chr3_3:79812028-79812047 | None:intergenic | 30.0% | |
| ! | GCTTTTCATTTGACATTGAA+AGG | + | chr3_3:79812120-79812139 | Msa0476080:intron | 30.0% |
| TAACAAGTAACAACTGAAGA+AGG | - | chr3_3:79812269-79812288 | None:intergenic | 30.0% | |
| GAAGAGAATGGTACAATTAA+AGG | + | chr3_3:79812356-79812375 | Msa0476080:CDS | 30.0% | |
| GTTGAAAATTTGATCACCTT+AGG | - | chr3_3:79812485-79812504 | None:intergenic | 30.0% | |
| !! | GTATATCAACTAAGGTGTTT+TGG | + | chr3_3:79812637-79812656 | Msa0476080:intron | 30.0% |
| TGATTTACTATGGGATTTAC+AGG | - | chr3_3:79812679-79812698 | None:intergenic | 30.0% | |
| AAATCCCATAGTAAATCAGA+TGG | + | chr3_3:79812681-79812700 | Msa0476080:intron | 30.0% | |
| ! | ATTTTTCTAGATCTACCTCT+AGG | - | chr3_3:79812721-79812740 | None:intergenic | 30.0% |
| GGTAGATCTAGAAAAATTGT+AGG | + | chr3_3:79812724-79812743 | Msa0476080:intron | 30.0% | |
| TGATTATCAAGAAAGACTTG+AGG | + | chr3_3:79812749-79812768 | Msa0476080:intron | 30.0% | |
| TTATCTAACGGAATAAGACT+TGG | + | chr3_3:79812841-79812860 | Msa0476080:intron | 30.0% | |
| AAAAAAAAACCGACGAGAAT+AGG | - | chr3_3:79812937-79812956 | None:intergenic | 30.0% | |
| ! | TTATTTCTTTCTGTGTTTGC+AGG | + | chr3_3:79813013-79813032 | Msa0476080:intron | 30.0% |
| CGAATTTCTGTACTACTTAT+GGG | - | chr3_3:79813146-79813165 | None:intergenic | 30.0% | |
| ATTTCACCATTGGAAATAGA+TGG | - | chr3_3:79813200-79813219 | None:intergenic | 30.0% | |
| ATCTATTTCCAATGGTGAAA+TGG | + | chr3_3:79813199-79813218 | Msa0476080:CDS | 30.0% | |
| TAAGAGTTAGCTGATGATAA+GGG | + | chr3_3:79813356-79813375 | Msa0476080:intron | 30.0% | |
| GATAAGGGAAAAAAATTTGC+AGG | + | chr3_3:79813371-79813390 | Msa0476080:intron | 30.0% | |
| ! | AGGATTCAAGGTATTTACAA+AGG | - | chr3_3:79813632-79813651 | None:intergenic | 30.0% |
| TAAGGTAATTCCTTAAACTG+AGG | + | chr3_3:79813665-79813684 | Msa0476080:intron | 30.0% | |
| !!! | TTTTTTACTCTGCTTAATGC+TGG | + | chr3_3:79813762-79813781 | Msa0476080:intron | 30.0% |
| ! | TTTTTACTCTGCTTAATGCT+GGG | + | chr3_3:79813763-79813782 | Msa0476080:intron | 30.0% |
| ATATTTGAATATACAGCCAG+TGG | + | chr3_3:79813795-79813814 | Msa0476080:intron | 30.0% | |
| ! | TGCAAAAACCAATTGTCTTT+TGG | + | chr3_3:79814157-79814176 | Msa0476080:intron | 30.0% |
| AATCATCTTGCCCATTATTA+AGG | + | chr3_3:79814194-79814213 | Msa0476080:CDS | 30.0% | |
| ATTCCTTCTGCCTTAATAAT+GGG | - | chr3_3:79814207-79814226 | None:intergenic | 30.0% | |
| ! | GAATACGTCTTTAAAAGTCA+AGG | + | chr3_3:79814301-79814320 | Msa0476080:three_prime_UTR | 30.0% |
| CCCAAAATATAAGCGAAAAT+TGG | - | chr3_3:79814526-79814545 | None:intergenic | 30.0% | |
| !! | TTTTCGCTTATATTTTGGGA+CGG | + | chr3_3:79814527-79814546 | Msa0476080:three_prime_UTR | 30.0% |
| CATTCAATGTTAGTACATGT+TGG | - | chr3_3:79814704-79814723 | None:intergenic | 30.0% | |
| AAACTCAAAACTCTTTGCGT+CGG | - | chr3_3:79809649-79809668 | None:intergenic | 35.0% | |
| GACGTTGATATCATCATTGT+CGG | + | chr3_3:79809843-79809862 | Msa0476080:CDS | 35.0% | |
| GGTGGAAATTACGAAGAAAT+AGG | - | chr3_3:79809928-79809947 | None:intergenic | 35.0% | |
| CACAACAACAGATTTAACCA+TGG | - | chr3_3:79810052-79810071 | None:intergenic | 35.0% | |
| CATGGTTAAATCTGTTGTTG+TGG | + | chr3_3:79810050-79810069 | Msa0476080:intron | 35.0% | |
| !! | TTTAGGTTTGTTGACTGTAC+AGG | + | chr3_3:79810080-79810099 | Msa0476080:intron | 35.0% |
| GATGCATAGTATCACTAACA+TGG | - | chr3_3:79810164-79810183 | None:intergenic | 35.0% | |
| TGTTAGTGATACTATGCATC+CGG | + | chr3_3:79810164-79810183 | Msa0476080:intron | 35.0% | |
| AGATGGTAGAAACTCAACTT+AGG | + | chr3_3:79810467-79810486 | Msa0476080:intron | 35.0% | |
| CATGTAGAGAGAAGACATAT+AGG | + | chr3_3:79810499-79810518 | Msa0476080:intron | 35.0% | |
| AGTGAAATCAAAAGAGACAG+AGG | + | chr3_3:79810556-79810575 | Msa0476080:intron | 35.0% | |
| GTTTGTACTTAGAAATGGCA+AGG | - | chr3_3:79810839-79810858 | None:intergenic | 35.0% | |
| ! | TGCCATTTCTAAGTACAAAC+TGG | + | chr3_3:79810839-79810858 | Msa0476080:intron | 35.0% |
| GCCATTTCTAAGTACAAACT+GGG | + | chr3_3:79810840-79810859 | Msa0476080:intron | 35.0% | |
| CCATTTCTAAGTACAAACTG+GGG | + | chr3_3:79810841-79810860 | Msa0476080:intron | 35.0% | |
| AAACTGGGAGACAAAAAGAT+AGG | - | chr3_3:79811115-79811134 | None:intergenic | 35.0% | |
| ACACAACGCAAACAAAAACT+GGG | - | chr3_3:79811130-79811149 | None:intergenic | 35.0% | |
| AACACAACGCAAACAAAAAC+TGG | - | chr3_3:79811131-79811150 | None:intergenic | 35.0% | |
| CTATCTCAAATTGATTGAGC+TGG | + | chr3_3:79811338-79811357 | Msa0476080:CDS | 35.0% | |
| GAAACTTAGCAGTGTGTATA+TGG | + | chr3_3:79811375-79811394 | Msa0476080:intron | 35.0% | |
| ! | TCTGAGTGAAACTTTTCCAA+GGG | - | chr3_3:79811608-79811627 | None:intergenic | 35.0% |
| ! | ATCTGAGTGAAACTTTTCCA+AGG | - | chr3_3:79811609-79811628 | None:intergenic | 35.0% |
| ! | TGCTTATAATTTAGGACGGA+GGG | - | chr3_3:79811708-79811727 | None:intergenic | 35.0% |
| ! | TTGCTTATAATTTAGGACGG+AGG | - | chr3_3:79811709-79811728 | None:intergenic | 35.0% |
| TATGTTATGTAGTGTACGGT+TGG | + | chr3_3:79812307-79812326 | Msa0476080:intron | 35.0% | |
| GTACAAAATGAAAGATGCTC+AGG | + | chr3_3:79812385-79812404 | Msa0476080:CDS | 35.0% | |
| GAAACAACCATCACAAACAA+TGG | - | chr3_3:79812435-79812454 | None:intergenic | 35.0% | |
| CCTTAGGATTACAAAGAGAA+CGG | - | chr3_3:79812469-79812488 | None:intergenic | 35.0% | |
| CTCTCCATCTGATTTACTAT+GGG | - | chr3_3:79812688-79812707 | None:intergenic | 35.0% | |
| ACTCTCCATCTGATTTACTA+TGG | - | chr3_3:79812689-79812708 | None:intergenic | 35.0% | |
| ! | TAACGTTGGCTACATATATC+AGG | - | chr3_3:79812824-79812843 | None:intergenic | 35.0% |
| ATGTAGCCAACGTTATCTAA+CGG | + | chr3_3:79812829-79812848 | Msa0476080:intron | 35.0% | |
| CTTATTCCGTTAGATAACGT+TGG | - | chr3_3:79812838-79812857 | None:intergenic | 35.0% | |
| ACCAATAGTCTGTAGAATTC+TGG | + | chr3_3:79812970-79812989 | Msa0476080:intron | 35.0% | |
| TCCAGAATTCTACAGACTAT+TGG | - | chr3_3:79812974-79812993 | None:intergenic | 35.0% | |
| ACTAAGCCAACAAAACAAGA+GGG | - | chr3_3:79813047-79813066 | None:intergenic | 35.0% | |
| AACTAAGCCAACAAAACAAG+AGG | - | chr3_3:79813048-79813067 | None:intergenic | 35.0% | |
| GCGAATTTCTGTACTACTTA+TGG | - | chr3_3:79813147-79813166 | None:intergenic | 35.0% | |
| AAGGTTCCATCTATTTCCAA+TGG | + | chr3_3:79813191-79813210 | Msa0476080:CDS | 35.0% | |
| ! | ATACTTTGCCATTTCACCAT+TGG | - | chr3_3:79813210-79813229 | None:intergenic | 35.0% |
| ACTTTACACTTAGTGAGAAC+AGG | + | chr3_3:79813312-79813331 | Msa0476080:intron | 35.0% | |
| CTTTACACTTAGTGAGAACA+GGG | + | chr3_3:79813313-79813332 | Msa0476080:intron | 35.0% | |
| CTAAGAGTTAGCTGATGATA+AGG | + | chr3_3:79813355-79813374 | Msa0476080:intron | 35.0% | |
| ! | TCAAGGTATTTACAAAGGCT+AGG | - | chr3_3:79813627-79813646 | None:intergenic | 35.0% |
| TTAAGGAATTACCTTACGCA+AGG | - | chr3_3:79813661-79813680 | None:intergenic | 35.0% | |
| ! | ATTTCTTTTCTTGCTGGATC+AGG | - | chr3_3:79813874-79813893 | None:intergenic | 35.0% |
| TGCTTTGATTATCTGAGTCT+TGG | + | chr3_3:79813904-79813923 | Msa0476080:CDS | 35.0% | |
| GCTTTGATTATCTGAGTCTT+GGG | + | chr3_3:79813905-79813924 | Msa0476080:CDS | 35.0% | |
| CTTTGATTATCTGAGTCTTG+GGG | + | chr3_3:79813906-79813925 | Msa0476080:CDS | 35.0% | |
| TTTGATTATCTGAGTCTTGG+GGG | + | chr3_3:79813907-79813926 | Msa0476080:CDS | 35.0% | |
| AAATGAAGAACCAAACTCAG+GGG | - | chr3_3:79813982-79814001 | None:intergenic | 35.0% | |
| GAAATGAAGAACCAAACTCA+GGG | - | chr3_3:79813983-79814002 | None:intergenic | 35.0% | |
| AGAAATGAAGAACCAAACTC+AGG | - | chr3_3:79813984-79814003 | None:intergenic | 35.0% | |
| TACGATTAATCGCTGTAAGT+AGG | + | chr3_3:79814076-79814095 | Msa0476080:intron | 35.0% | |
| !!! | CGCTGTAAGTAGGAATTTTT+TGG | + | chr3_3:79814086-79814105 | Msa0476080:intron | 35.0% |
| !! | AATAATGGGCAAGATGATTC+CGG | - | chr3_3:79814193-79814212 | None:intergenic | 35.0% |
| GATTCCTTCTGCCTTAATAA+TGG | - | chr3_3:79814208-79814227 | None:intergenic | 35.0% | |
| ATACAAATTTATGCAGCTGG+AGG | - | chr3_3:79814276-79814295 | None:intergenic | 35.0% | |
| AAAACAATGCTAGCTCATCT+TGG | - | chr3_3:79814332-79814351 | None:intergenic | 35.0% | |
| AAATTCTTGCAAGACGCAAA+GGG | + | chr3_3:79814643-79814662 | Msa0476080:three_prime_UTR | 35.0% | |
| AACACAACACAAACACAGCA+CGG | + | chr3_3:79809610-79809629 | Msa0476080:five_prime_UTR | 40.0% | |
| TAAATCTGTTGTTGTGGGTC+AGG | + | chr3_3:79810056-79810075 | Msa0476080:intron | 40.0% | |
| AAATCTGTTGTTGTGGGTCA+GGG | + | chr3_3:79810057-79810076 | Msa0476080:intron | 40.0% | |
| AATGGATATTCCGACAGTCA+CGG | + | chr3_3:79810762-79810781 | Msa0476080:intron | 40.0% | |
| TACTTAGAAATGGCAAGGTG+GGG | - | chr3_3:79810834-79810853 | None:intergenic | 40.0% | |
| GTACTTAGAAATGGCAAGGT+GGG | - | chr3_3:79810835-79810854 | None:intergenic | 40.0% | |
| TGTACTTAGAAATGGCAAGG+TGG | - | chr3_3:79810836-79810855 | None:intergenic | 40.0% | |
| CCCCAGTTTGTACTTAGAAA+TGG | - | chr3_3:79810844-79810863 | None:intergenic | 40.0% | |
| !! | AGTTTGTTAGTTCCCTTACG+AGG | + | chr3_3:79810914-79810933 | Msa0476080:intron | 40.0% |
| ! | GTTTGTTAGTTCCCTTACGA+GGG | + | chr3_3:79810915-79810934 | Msa0476080:intron | 40.0% |
| AGGGTAAAATACCCTCGTAA+GGG | - | chr3_3:79810929-79810948 | None:intergenic | 40.0% | |
| TACAGGGAGCAAAAACAAGA+GGG | - | chr3_3:79810948-79810967 | None:intergenic | 40.0% | |
| ATACAGGGAGCAAAAACAAG+AGG | - | chr3_3:79810949-79810968 | None:intergenic | 40.0% | |
| CTGACTTCTAACTTTCCCTT+TGG | + | chr3_3:79811046-79811065 | Msa0476080:intron | 40.0% | |
| TAACTTTCCCTTTGGTCTCA+AGG | + | chr3_3:79811054-79811073 | Msa0476080:intron | 40.0% | |
| AGTAGAACCTTGAGACCAAA+GGG | - | chr3_3:79811064-79811083 | None:intergenic | 40.0% | |
| TAGTAGAACCTTGAGACCAA+AGG | - | chr3_3:79811065-79811084 | None:intergenic | 40.0% | |
| !! | CAAGTTGATTCCTGACATGT+TGG | + | chr3_3:79811159-79811178 | Msa0476080:intron | 40.0% |
| ATCTAATGTAGGATGGACGA+CGG | + | chr3_3:79811247-79811266 | Msa0476080:intron | 40.0% | |
| AATGAACCAGACCGAATTGT+TGG | + | chr3_3:79811294-79811313 | Msa0476080:CDS | 40.0% | |
| ! | ATCAATTTGAGATAGCCTCC+AGG | - | chr3_3:79811333-79811352 | None:intergenic | 40.0% |
| ATTGATGCTCAGCAAGTGTT+TGG | + | chr3_3:79811539-79811558 | Msa0476080:CDS | 40.0% | |
| TTGATGCTCAGCAAGTGTTT+GGG | + | chr3_3:79811540-79811559 | Msa0476080:CDS | 40.0% | |
| ! | GTTTGGGTATGCTCTTTTCA+AGG | + | chr3_3:79811556-79811575 | Msa0476080:CDS | 40.0% |
| !! | GGTATGCTCTTTTCAAGGAT+GGG | + | chr3_3:79811561-79811580 | Msa0476080:CDS | 40.0% |
| AAGTTTCACTCAGATATCGC+TGG | + | chr3_3:79811614-79811633 | Msa0476080:CDS | 40.0% | |
| CTGGAAGAAGCTTTCACAAT+GGG | + | chr3_3:79811633-79811652 | Msa0476080:CDS | 40.0% | |
| TTGCTTATAAATTGGGACGG+AGG | + | chr3_3:79811987-79812006 | Msa0476080:intron | 40.0% | |
| TGCTTATAAATTGGGACGGA+GGG | + | chr3_3:79811988-79812007 | Msa0476080:intron | 40.0% | |
| CATTTGACATTGAAAGGCCA+AGG | + | chr3_3:79812126-79812145 | Msa0476080:intron | 40.0% | |
| TGTACCATTCTCTTCGAGTA+GGG | - | chr3_3:79812351-79812370 | None:intergenic | 40.0% | |
| TTGTACCATTCTCTTCGAGT+AGG | - | chr3_3:79812352-79812371 | None:intergenic | 40.0% | |
| CCATCACAAACAATGGTAAG+AGG | - | chr3_3:79812428-79812447 | None:intergenic | 40.0% | |
| CCTCTTACCATTGTTTGTGA+TGG | + | chr3_3:79812425-79812444 | Msa0476080:CDS | 40.0% | |
| CCGTTCTCTTTGTAATCCTA+AGG | + | chr3_3:79812466-79812485 | Msa0476080:CDS | 40.0% | |
| AGAATGTTGCACTTGATGTG+TGG | + | chr3_3:79812560-79812579 | Msa0476080:intron | 40.0% | |
| GAACTTCCATGTGCAAATCA+TGG | + | chr3_3:79813080-79813099 | Msa0476080:CDS | 40.0% | |
| AAATCATGGTCACGTCATAC+TGG | + | chr3_3:79813094-79813113 | Msa0476080:CDS | 40.0% | |
| AATCATGGTCACGTCATACT+GGG | + | chr3_3:79813095-79813114 | Msa0476080:CDS | 40.0% | |
| CTTATGGGATAGAACAGAAC+CGG | - | chr3_3:79813131-79813150 | None:intergenic | 40.0% | |
| TAGTACAGAAATTCGCTGTC+TGG | + | chr3_3:79813151-79813170 | Msa0476080:CDS | 40.0% | |
| ! | GGCAAAGTATTTGAAGACAG+TGG | + | chr3_3:79813220-79813239 | Msa0476080:CDS | 40.0% |
| CATCAGCTAACTCTTAGCTA+AGG | - | chr3_3:79813352-79813371 | None:intergenic | 40.0% | |
| TGTTTGGCATTGTCCTTATG+TGG | - | chr3_3:79813443-79813462 | None:intergenic | 40.0% | |
| GCATCATTCAGGTCAAGTAA+AGG | - | chr3_3:79813603-79813622 | None:intergenic | 40.0% | |
| GCAAGGTATAGAAGGATTCA+AGG | - | chr3_3:79813644-79813663 | None:intergenic | 40.0% | |
| ATCCTTCTATACCTTGCGTA+AGG | + | chr3_3:79813647-79813666 | Msa0476080:CDS | 40.0% | |
| TACCTTACGCAAGGTATAGA+AGG | - | chr3_3:79813652-79813671 | None:intergenic | 40.0% | |
| ! | TGACGCATTTCTTTTCTTGC+TGG | - | chr3_3:79813880-79813899 | None:intergenic | 40.0% |
| !! | CTTGGGGGTTTATTTTCAGA+AGG | + | chr3_3:79813922-79813941 | Msa0476080:CDS | 40.0% |
| AATCCTGAAAGCAAAGAGAC+TGG | - | chr3_3:79813949-79813968 | None:intergenic | 40.0% | |
| AATGAAGAACCAAACTCAGG+GGG | - | chr3_3:79813981-79814000 | None:intergenic | 40.0% | |
| TTCCGATCCATATGCGTTTA+GGG | - | chr3_3:79814056-79814075 | None:intergenic | 40.0% | |
| ATTCCGATCCATATGCGTTT+AGG | - | chr3_3:79814057-79814076 | None:intergenic | 40.0% | |
| TTGCCCATTATTAAGGCAGA+AGG | + | chr3_3:79814201-79814220 | Msa0476080:CDS | 40.0% | |
| TTGCAGGGAAGAACATTTGA+CGG | - | chr3_3:79814230-79814249 | None:intergenic | 40.0% | |
| AATAAGCTGGAACAGTTGCA+GGG | - | chr3_3:79814245-79814264 | None:intergenic | 40.0% | |
| TAATAAGCTGGAACAGTTGC+AGG | - | chr3_3:79814246-79814265 | None:intergenic | 40.0% | |
| CAAATTCTTGCAAGACGCAA+AGG | + | chr3_3:79814642-79814661 | Msa0476080:three_prime_UTR | 40.0% | |
| AATTCTTGCAAGACGCAAAG+GGG | + | chr3_3:79814644-79814663 | Msa0476080:three_prime_UTR | 40.0% | |
| GAAATTGTAGAGTGCAGCGA+GGG | - | chr3_3:79809727-79809746 | None:intergenic | 45.0% | |
| AAAAGATCTGCATTCTCCGG+TGG | - | chr3_3:79809811-79809830 | None:intergenic | 45.0% | |
| ATGATATCAACGTCGCCGTT+TGG | - | chr3_3:79809837-79809856 | None:intergenic | 45.0% | |
| GATATCATCATTGTCGGTGC+TGG | + | chr3_3:79809849-79809868 | Msa0476080:CDS | 45.0% | |
| ACTGTGAATGTCCGTATCCA+TGG | + | chr3_3:79810032-79810051 | Msa0476080:intron | 45.0% | |
| TTGTCGCTGTCTAAGTACAC+CGG | - | chr3_3:79810186-79810205 | None:intergenic | 45.0% | |
| AAGTGTGGTCGGTTACATCA+TGG | - | chr3_3:79810679-79810698 | None:intergenic | 45.0% | |
| ATGTAACCGACCACACTTAG+TGG | + | chr3_3:79810681-79810700 | Msa0476080:intron | 45.0% | |
| TTATCGCCACTAAGTGTGGT+CGG | - | chr3_3:79810690-79810709 | None:intergenic | 45.0% | |
| AACCTTATCGCCACTAAGTG+TGG | - | chr3_3:79810694-79810713 | None:intergenic | 45.0% | |
| CACTTAGTGGCGATAAGGTT+TGG | + | chr3_3:79810694-79810713 | Msa0476080:intron | 45.0% | |
| ATGGATATTCCGACAGTCAC+GGG | + | chr3_3:79810763-79810782 | Msa0476080:intron | 45.0% | |
| ! | GGCAGCAGATTTTTACCCTT+GGG | + | chr3_3:79810785-79810804 | Msa0476080:intron | 45.0% |
| ! | GATTTTTACCCTTGGGAGTG+AGG | + | chr3_3:79810792-79810811 | Msa0476080:intron | 45.0% |
| GAGGGTAAAATACCCTCGTA+AGG | - | chr3_3:79810930-79810949 | None:intergenic | 45.0% | |
| TCTAATGTAGGATGGACGAC+GGG | + | chr3_3:79811248-79811267 | Msa0476080:intron | 45.0% | |
| GTAGCAACTCGCCAACAATT+CGG | - | chr3_3:79811308-79811327 | None:intergenic | 45.0% | |
| TTGATTGAGCTGGGACTTGA+AGG | + | chr3_3:79811348-79811367 | Msa0476080:CDS | 45.0% | |
| !! | GGGTATGCTCTTTTCAAGGA+TGG | + | chr3_3:79811560-79811579 | Msa0476080:CDS | 45.0% |
| GCTGGAAGAAGCTTTCACAA+TGG | + | chr3_3:79811632-79811651 | Msa0476080:CDS | 45.0% | |
| ATTCGTGCGTGCAGAATCAT+TGG | - | chr3_3:79812088-79812107 | None:intergenic | 45.0% | |
| ACTTCCCTACTCGAAGAGAA+TGG | + | chr3_3:79812344-79812363 | Msa0476080:CDS | 45.0% | |
| !! | TAAGGTGTTTTGGGCATGTG+TGG | + | chr3_3:79812647-79812666 | Msa0476080:intron | 45.0% |
| GAGAGTAGCTCAAATCCTAG+AGG | + | chr3_3:79812703-79812722 | Msa0476080:intron | 45.0% | |
| CTCTCTACTCCTATTCTCGT+CGG | + | chr3_3:79812925-79812944 | Msa0476080:intron | 45.0% | |
| CTTTCTGTGTTTGCAGGTAG+AGG | + | chr3_3:79813019-79813038 | Msa0476080:intron | 45.0% | |
| !!! | GAGGTTCCCTCTTGTTTTGT+TGG | + | chr3_3:79813038-79813057 | Msa0476080:CDS | 45.0% |
| ! | ACGTGACCATGATTTGCACA+TGG | - | chr3_3:79813089-79813108 | None:intergenic | 45.0% |
| ATAGATGGAACCTTCTGACC+AGG | - | chr3_3:79813185-79813204 | None:intergenic | 45.0% | |
| CTTGTAGAACCACGAGTAGA+TGG | - | chr3_3:79813260-79813279 | None:intergenic | 45.0% | |
| TGAAAGCAGCATGAAGCTCA+GGG | - | chr3_3:79813401-79813420 | None:intergenic | 45.0% | |
| ATGAAAGCAGCATGAAGCTC+AGG | - | chr3_3:79813402-79813421 | None:intergenic | 45.0% | |
| TTCATAGCTGCAGTGGACAA+AGG | + | chr3_3:79813417-79813436 | Msa0476080:CDS | 45.0% | |
| GAATGCATCTCCCATCAGAA+GGG | - | chr3_3:79813502-79813521 | None:intergenic | 45.0% | |
| TGAATGCATCTCCCATCAGA+AGG | - | chr3_3:79813503-79813522 | None:intergenic | 45.0% | |
| AAAGGCTAGGTGCATCATTC+AGG | - | chr3_3:79813614-79813633 | None:intergenic | 45.0% | |
| GAAGTGGTTGCCTCAGTTTA+AGG | - | chr3_3:79813678-79813697 | None:intergenic | 45.0% | |
| !! | GTATTTATGGTGGATGCCAC+TGG | - | chr3_3:79813814-79813833 | None:intergenic | 45.0% |
| GGCATCCACCATAAATACGT+TGG | + | chr3_3:79813816-79813835 | Msa0476080:CDS | 45.0% | |
| TCCACCATAAATACGTTGGC+AGG | + | chr3_3:79813820-79813839 | Msa0476080:CDS | 45.0% | |
| TCCTGCCAACGTATTTATGG+TGG | - | chr3_3:79813824-79813843 | None:intergenic | 45.0% | |
| TGCTCCTGCCAACGTATTTA+TGG | - | chr3_3:79813827-79813846 | None:intergenic | 45.0% | |
| TTCTTCGCTGTCGCGATATA+TGG | + | chr3_3:79814000-79814019 | Msa0476080:CDS | 45.0% | |
| ATGCGTTTAGGGGAAGGAAA+TGG | - | chr3_3:79814045-79814064 | None:intergenic | 45.0% | |
| TTCCTTCCCCTAAACGCATA+TGG | + | chr3_3:79814046-79814065 | Msa0476080:CDS | 45.0% | |
| ATCCATATGCGTTTAGGGGA+AGG | - | chr3_3:79814051-79814070 | None:intergenic | 45.0% | |
| TCCCCTAAACGCATATGGAT+CGG | + | chr3_3:79814051-79814070 | Msa0476080:CDS | 45.0% | |
| TCCGATCCATATGCGTTTAG+GGG | - | chr3_3:79814055-79814074 | None:intergenic | 45.0% | |
| GCACTCTGCCAAAAGACAAT+TGG | - | chr3_3:79814168-79814187 | None:intergenic | 45.0% | |
| !! | GGAGGTGCTCTATAATAAGC+TGG | - | chr3_3:79814258-79814277 | None:intergenic | 45.0% |
| !!! | TCGCTTATATTTTGGGACGG+AGG | + | chr3_3:79814530-79814549 | Msa0476080:three_prime_UTR | 45.0% |
| !!! | CGCTTATATTTTGGGACGGA+GGG | + | chr3_3:79814531-79814550 | Msa0476080:three_prime_UTR | 45.0% |
| !! | ATAAAATAAAAATAAAACAA+TGG | - | chr3_3:79812997-79813016 | None:intergenic | 5.0% |
| ATTACGTCCAGCGAAGAGAG+AGG | + | chr3_3:79809584-79809603 | Msa0476080:five_prime_UTR | 50.0% | |
| TTACGTCCAGCGAAGAGAGA+GGG | + | chr3_3:79809585-79809604 | Msa0476080:five_prime_UTR | 50.0% | |
| ! | TGTTTTCCCTCTCTCTTCGC+TGG | - | chr3_3:79809594-79809613 | None:intergenic | 50.0% |
| ! | TAGGGGTCGACCATTTTGAG+AGG | - | chr3_3:79809672-79809691 | None:intergenic | 50.0% |
| CTCAAAATGGTCGACCCCTA+CGG | + | chr3_3:79809672-79809691 | Msa0476080:exon | 50.0% | |
| GGAAATTGTAGAGTGCAGCG+AGG | - | chr3_3:79809728-79809747 | None:intergenic | 50.0% | |
| TGGTGGTTGTTGCATCGGAA+TGG | - | chr3_3:79809767-79809786 | None:intergenic | 50.0% | |
| TGTAATGTTCTCAGCGGTGG+TGG | - | chr3_3:79809784-79809803 | None:intergenic | 50.0% | |
| GGTTGTAATGTTCTCAGCGG+TGG | - | chr3_3:79809787-79809806 | None:intergenic | 50.0% | |
| GGCGGTTGTAATGTTCTCAG+CGG | - | chr3_3:79809790-79809809 | None:intergenic | 50.0% | |
| GAGAACATTACAACCGCCAC+CGG | + | chr3_3:79809792-79809811 | Msa0476080:CDS | 50.0% | |
| GTTGTTGTGGGTCAGGGTTT+AGG | + | chr3_3:79810063-79810082 | Msa0476080:intron | 50.0% | |
| GACCACACTTAGTGGCGATA+AGG | + | chr3_3:79810689-79810708 | Msa0476080:intron | 50.0% | |
| TGGATATTCCGACAGTCACG+GGG | + | chr3_3:79810764-79810783 | Msa0476080:intron | 50.0% | |
| ! | GGGCAGCAGATTTTTACCCT+TGG | + | chr3_3:79810784-79810803 | Msa0476080:intron | 50.0% |
| GGGTAATTCCTCACTCCCAA+GGG | - | chr3_3:79810803-79810822 | None:intergenic | 50.0% | |
| AGGGTAATTCCTCACTCCCA+AGG | - | chr3_3:79810804-79810823 | None:intergenic | 50.0% | |
| GTTCTACTATCCAGCTCAGC+TGG | + | chr3_3:79811076-79811095 | Msa0476080:intron | 50.0% | |
| AACTCGCCAACAATTCGGTC+TGG | - | chr3_3:79811303-79811322 | None:intergenic | 50.0% | |
| ! | TTCTGGCTGATCTTGAGTGC+TGG | + | chr3_3:79811422-79811441 | Msa0476080:intron | 50.0% |
| CACGAGACTCTCTTATCCCT+TGG | + | chr3_3:79811589-79811608 | Msa0476080:CDS | 50.0% | |
| !! | TTAGGACGGAGGGAGTACTT+GGG | - | chr3_3:79811698-79811717 | None:intergenic | 50.0% |
| !! | TTTAGGACGGAGGGAGTACT+TGG | - | chr3_3:79811699-79811718 | None:intergenic | 50.0% |
| ! | AATTGGGACGGAGGGAGTAT+TGG | + | chr3_3:79811996-79812015 | Msa0476080:intron | 50.0% |
| TGTAGTGTACGGTTGGAGCA+AGG | + | chr3_3:79812314-79812333 | Msa0476080:intron | 50.0% | |
| CATACTGGGAGATCCTTCAC+CGG | + | chr3_3:79813109-79813128 | Msa0476080:CDS | 50.0% | |
| GGATAGAACAGAACCGGTGA+AGG | - | chr3_3:79813125-79813144 | None:intergenic | 50.0% | |
| ! | GGTTGATGTTCCTGGTCAGA+AGG | + | chr3_3:79813172-79813191 | Msa0476080:CDS | 50.0% |
| AAAGCAGCATGAAGCTCAGG+GGG | - | chr3_3:79813399-79813418 | None:intergenic | 50.0% | |
| GAAAGCAGCATGAAGCTCAG+GGG | - | chr3_3:79813400-79813419 | None:intergenic | 50.0% | |
| !! | TGCTGCTTTCATAGCTGCAG+TGG | + | chr3_3:79813410-79813429 | Msa0476080:CDS | 50.0% |
| CAGTGGACAAAGGCCACATA+AGG | + | chr3_3:79813427-79813446 | Msa0476080:CDS | 50.0% | |
| !! | GTTGGCAGGAGCACTTTACA+AGG | + | chr3_3:79813834-79813853 | Msa0476080:CDS | 50.0% |
| GGACCAGTCTCTTTGCTTTC+AGG | + | chr3_3:79813943-79813962 | Msa0476080:CDS | 50.0% | |
| GCTGTCGCGATATATGGTGT+TGG | + | chr3_3:79814006-79814025 | Msa0476080:CDS | 50.0% | |
| ! | GTCTTTTGGCAGAGTGCATC+CGG | + | chr3_3:79814171-79814190 | Msa0476080:intron | 50.0% |
| ATGGTCGACCCCTACGGTTT+CGG | + | chr3_3:79809678-79809697 | Msa0476080:CDS | 55.0% | |
| TGATCCACCCGAAACCGTAG+GGG | - | chr3_3:79809689-79809708 | None:intergenic | 55.0% | |
| GTGATCCACCCGAAACCGTA+GGG | - | chr3_3:79809690-79809709 | None:intergenic | 55.0% | |
| TGTGATCCACCCGAAACCGT+AGG | - | chr3_3:79809691-79809710 | None:intergenic | 55.0% | |
| ! | AGCGGTGGTGGTTGTTGCAT+CGG | - | chr3_3:79809772-79809791 | None:intergenic | 55.0% |
| AGATCTGCATTCTCCGGTGG+CGG | - | chr3_3:79809808-79809827 | None:intergenic | 55.0% | |
| TCCGCTCTCGCTTACACTCT+CGG | + | chr3_3:79809882-79809901 | Msa0476080:CDS | 55.0% | |
| TCTCGCTTACACTCTCGGCA+AGG | + | chr3_3:79809887-79809906 | Msa0476080:CDS | 55.0% | |
| AAGAAGAGGACCAGCTGAGC+TGG | - | chr3_3:79811089-79811108 | None:intergenic | 55.0% | |
| GTTGGCGAGTTGCTACAACC+TGG | + | chr3_3:79811312-79811331 | Msa0476080:CDS | 55.0% | |
| !! | ACGGAGGGAGTACTTGGGAA+GGG | - | chr3_3:79811693-79811712 | None:intergenic | 55.0% |
| !! | GGTGTTTTGGGCATGTGTGG+AGG | + | chr3_3:79812650-79812669 | Msa0476080:intron | 55.0% |
| ! | CGCTGTCTGGTTGATGTTCC+TGG | + | chr3_3:79813164-79813183 | Msa0476080:CDS | 55.0% |
| GAAGACAGTGGTAGCTCCAC+AGG | + | chr3_3:79813232-79813251 | Msa0476080:CDS | 55.0% | |
| CCACGAGTAGATGGTACCTG+TGG | - | chr3_3:79813251-79813270 | None:intergenic | 55.0% | |
| CCACAGGTACCATCTACTCG+TGG | + | chr3_3:79813248-79813267 | Msa0476080:intron | 55.0% | |
| TCGGCTGGCATGCTTCTGTT+TGG | - | chr3_3:79813459-79813478 | None:intergenic | 55.0% | |
| AACATGCGCCATCCCCTAAC+CGG | + | chr3_3:79813522-79813541 | Msa0476080:CDS | 55.0% | |
| ! | GACGGAGGGAGTACATTGCT+GGG | + | chr3_3:79814545-79814564 | Msa0476080:three_prime_UTR | 55.0% |
| CTTGCAAGACGCAAAGGGGA+CGG | + | chr3_3:79814648-79814667 | Msa0476080:three_prime_UTR | 55.0% | |
| TGGTCGACCCCTACGGTTTC+GGG | + | chr3_3:79809679-79809698 | Msa0476080:CDS | 60.0% | |
| GAGTGCAGCGAGGGTGATGA+GGG | - | chr3_3:79809718-79809737 | None:intergenic | 60.0% | |
| AGAGTGCAGCGAGGGTGATG+AGG | - | chr3_3:79809719-79809738 | None:intergenic | 60.0% | |
| !! | ATTGTCGGTGCTGGTGTCGC+CGG | + | chr3_3:79809858-79809877 | Msa0476080:CDS | 60.0% |
| AGTGTAAGCGAGAGCGGAGC+CGG | - | chr3_3:79809880-79809899 | None:intergenic | 60.0% | |
| ! | GCCGAGAGTGTAAGCGAGAG+CGG | - | chr3_3:79809886-79809905 | None:intergenic | 60.0% |
| ATCTGCTGCCCCGTGACTGT+CGG | - | chr3_3:79810775-79810794 | None:intergenic | 60.0% | |
| GGCGAGTTGCTACAACCTGG+AGG | + | chr3_3:79811315-79811334 | Msa0476080:CDS | 60.0% | |
| !! | GAGGGAGTACTTGGGAAGGG+AGG | - | chr3_3:79811690-79811709 | None:intergenic | 60.0% |
| !! | GACGGAGGGAGTACTTGGGA+AGG | - | chr3_3:79811694-79811713 | None:intergenic | 60.0% |
| AGCCGATCCTTATCCCACCC+CGG | + | chr3_3:79813473-79813492 | Msa0476080:CDS | 60.0% | |
| TCCCGGGGTGGGATAAGGAT+CGG | - | chr3_3:79813478-79813497 | None:intergenic | 60.0% | |
| TCTCCCATCAGAAGGGCTCC+CGG | - | chr3_3:79813495-79813514 | None:intergenic | 60.0% | |
| ACATGCGCCATCCCCTAACC+GGG | + | chr3_3:79813523-79813542 | Msa0476080:CDS | 60.0% | |
| AGTCATCCCACCCCCGGTTA+GGG | - | chr3_3:79813538-79813557 | None:intergenic | 60.0% | |
| AAACCCTCGCCCCCTGAGTT+TGG | + | chr3_3:79813969-79813988 | Msa0476080:CDS | 60.0% | |
| GAACCAAACTCAGGGGGCGA+GGG | - | chr3_3:79813975-79813994 | None:intergenic | 60.0% | |
| AGAACCAAACTCAGGGGGCG+AGG | - | chr3_3:79813976-79813995 | None:intergenic | 60.0% | |
| ! | GGACGGAGGGAGTACATTGC+TGG | + | chr3_3:79814544-79814563 | Msa0476080:three_prime_UTR | 60.0% |
| TCGACCCCTACGGTTTCGGG+TGG | + | chr3_3:79809682-79809701 | Msa0476080:CDS | 65.0% | |
| GGCAAGGTGGGGTGTGCACA+GGG | - | chr3_3:79810823-79810842 | None:intergenic | 65.0% | |
| TGGCAAGGTGGGGTGTGCAC+AGG | - | chr3_3:79810824-79810843 | None:intergenic | 65.0% | |
| GGGGTGGGATAAGGATCGGC+TGG | - | chr3_3:79813474-79813493 | None:intergenic | 65.0% | |
| GCCGATCCTTATCCCACCCC+GGG | + | chr3_3:79813474-79813493 | Msa0476080:CDS | 65.0% | |
| ATCAGAAGGGCTCCCGGGGT+GGG | - | chr3_3:79813489-79813508 | None:intergenic | 65.0% | |
| ACCCCGGGAGCCCTTCTGAT+GGG | + | chr3_3:79813489-79813508 | Msa0476080:CDS | 65.0% | |
| TCCCATCAGAAGGGCTCCCG+GGG | - | chr3_3:79813493-79813512 | None:intergenic | 65.0% | |
| CTCCCATCAGAAGGGCTCCC+GGG | - | chr3_3:79813494-79813513 | None:intergenic | 65.0% | |
| CATGCGCCATCCCCTAACCG+GGG | + | chr3_3:79813524-79813543 | Msa0476080:CDS | 65.0% | |
| ATGCGCCATCCCCTAACCGG+GGG | + | chr3_3:79813525-79813544 | Msa0476080:CDS | 65.0% | |
| GTCATCCCACCCCCGGTTAG+GGG | - | chr3_3:79813537-79813556 | None:intergenic | 65.0% | |
| CAGTCATCCCACCCCCGGTT+AGG | - | chr3_3:79813539-79813558 | None:intergenic | 65.0% | |
| AACCGGGGGTGGGATGACTG+TGG | + | chr3_3:79813539-79813558 | Msa0476080:CDS | 65.0% | |
| TGCCACAGTCATCCCACCCC+CGG | - | chr3_3:79813544-79813563 | None:intergenic | 65.0% | |
| AGGGCTCCCGGGGTGGGATA+AGG | - | chr3_3:79813483-79813502 | None:intergenic | 70.0% | |
| CATCAGAAGGGCTCCCGGGG+TGG | - | chr3_3:79813490-79813509 | None:intergenic | 70.0% | |
| CACCCCGGGAGCCCTTCTGA+TGG | + | chr3_3:79813488-79813507 | Msa0476080:CDS | 70.0% | |
| GCCATCCCCTAACCGGGGGT+GGG | + | chr3_3:79813529-79813548 | Msa0476080:CDS | 70.0% | |
| TCCCACCCCCGGTTAGGGGA+TGG | - | chr3_3:79813533-79813552 | None:intergenic | 70.0% | |
| CGCCATCCCCTAACCGGGGG+TGG | + | chr3_3:79813528-79813547 | Msa0476080:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79809572 | 79814752 | 79809572 | ID=Msa0476080;Name=Msa0476080 |
| chr3_3 | mRNA | 79809572 | 79814752 | 79809572 | ID=Msa0476080-mRNA-1;Parent=Msa0476080;Name=Msa0476080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=106|1|1|1|1|1|8|465|521 |
| chr3_3 | exon | 79809572 | 79809908 | 79809572 | ID=Msa0476080-mRNA-1:exon:21667;Parent=Msa0476080-mRNA-1 |
| chr3_3 | exon | 79811258 | 79811369 | 79811258 | ID=Msa0476080-mRNA-1:exon:21668;Parent=Msa0476080-mRNA-1 |
| chr3_3 | exon | 79811525 | 79811699 | 79811525 | ID=Msa0476080-mRNA-1:exon:21669;Parent=Msa0476080-mRNA-1 |
| chr3_3 | exon | 79812319 | 79812487 | 79812319 | ID=Msa0476080-mRNA-1:exon:21670;Parent=Msa0476080-mRNA-1 |
| chr3_3 | exon | 79813035 | 79813253 | 79813035 | ID=Msa0476080-mRNA-1:exon:21671;Parent=Msa0476080-mRNA-1 |
| chr3_3 | exon | 79813393 | 79813668 | 79813393 | ID=Msa0476080-mRNA-1:exon:21672;Parent=Msa0476080-mRNA-1 |
| chr3_3 | exon | 79813811 | 79814089 | 79813811 | ID=Msa0476080-mRNA-1:exon:21673;Parent=Msa0476080-mRNA-1 |
| chr3_3 | exon | 79814183 | 79814752 | 79814183 | ID=Msa0476080-mRNA-1:exon:21674;Parent=Msa0476080-mRNA-1 |
| chr3_3 | five_prime_UTR | 79809572 | 79809677 | 79809572 | ID=Msa0476080-mRNA-1:five_prime_utr;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79809678 | 79809908 | 79809678 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79811258 | 79811369 | 79811258 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79811525 | 79811699 | 79811525 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79812319 | 79812487 | 79812319 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79813035 | 79813253 | 79813035 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79813393 | 79813668 | 79813393 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79813811 | 79814089 | 79813811 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | CDS | 79814183 | 79814287 | 79814183 | ID=Msa0476080-mRNA-1:cds;Parent=Msa0476080-mRNA-1 |
| chr3_3 | three_prime_UTR | 79814288 | 79814752 | 79814288 | ID=Msa0476080-mRNA-1:three_prime_utr;Parent=Msa0476080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
