Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138890 | XP_003609712.1 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 2.16e-85 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138890 | sp|P55844|RL14_PEA | 91.729 | 133 | 11 | 0 | 1 | 133 | 1 | 133 | 2.14e-83 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138890 | B7FL54 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 1.03e-85 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027590 | Msa0138890 | 0.816690 | 4.856382e-52 | -8.615850e-47 |
| Msa0032810 | Msa0138890 | 0.807610 | 4.646239e-50 | -8.615850e-47 |
| Msa0042480 | Msa0138890 | 0.816935 | 4.277722e-52 | -8.615850e-47 |
| Msa0069080 | Msa0138890 | 0.812794 | 3.543071e-51 | -8.615850e-47 |
| Msa0075350 | Msa0138890 | 0.838578 | 2.646256e-57 | -8.615850e-47 |
| Msa0079590 | Msa0138890 | 0.803170 | 3.962010e-49 | -8.615850e-47 |
| Msa0114570 | Msa0138890 | 0.834283 | 3.277734e-56 | -8.615850e-47 |
| Msa0138890 | Msa0172930 | 0.839970 | 1.152319e-57 | -8.615850e-47 |
| Msa0138890 | Msa0191450 | 0.825332 | 4.965674e-54 | -8.615850e-47 |
| Msa0138890 | Msa0197980 | 0.832799 | 7.690790e-56 | -8.615850e-47 |
| Msa0138890 | Msa0210360 | 0.826595 | 2.488150e-54 | -8.615850e-47 |
| Msa0138890 | Msa0219120 | 0.806683 | 7.301072e-50 | -8.615850e-47 |
| Msa0138890 | Msa0221030 | 0.801649 | 8.148903e-49 | -8.615850e-47 |
| Msa0138890 | Msa0230520 | 0.807796 | 4.243419e-50 | -8.615850e-47 |
| Msa0138890 | Msa0265250 | 0.812531 | 4.045481e-51 | -8.615850e-47 |
| Msa0138890 | Msa0295250 | 0.812493 | 4.123151e-51 | -8.615850e-47 |
| Msa0138890 | Msa0297830 | 0.880268 | 6.310854e-70 | -8.615850e-47 |
| Msa0138890 | Msa0298870 | 0.810456 | 1.142663e-50 | -8.615850e-47 |
| Msa0138890 | Msa0301220 | 0.802986 | 4.324581e-49 | -8.615850e-47 |
| Msa0138890 | Msa0306690 | 0.805410 | 1.352963e-49 | -8.615850e-47 |
| Msa0138890 | Msa0310080 | 0.807026 | 6.179744e-50 | -8.615850e-47 |
| Msa0138890 | Msa0332640 | 0.843229 | 1.593092e-58 | -8.615850e-47 |
| Msa0138890 | Msa0335840 | 0.881505 | 2.269754e-70 | -8.615850e-47 |
| Msa0138890 | Msa0348830 | 0.800607 | 1.331598e-48 | -8.615850e-47 |
| Msa0138890 | Msa0382210 | 0.805691 | 1.181313e-49 | -8.615850e-47 |
| Msa0138890 | Msa0546030 | 0.817374 | 3.409365e-52 | -8.615850e-47 |
| Msa0138890 | Msa0584030 | 0.811263 | 7.641565e-51 | -8.615850e-47 |
| Msa0138890 | Msa0596370 | 0.843626 | 1.248268e-58 | -8.615850e-47 |
| Msa0138890 | Msa0604960 | 0.828720 | 7.684145e-55 | -8.615850e-47 |
| Msa0138890 | Msa0656410 | 0.803320 | 3.687290e-49 | -8.615850e-47 |
| Msa0138890 | Msa0683660 | 0.804925 | 1.709370e-49 | -8.615850e-47 |
| Msa0138890 | Msa0705800 | 0.868208 | 7.745550e-66 | -8.615850e-47 |
| Msa0138890 | Msa0712610 | 0.854293 | 1.355189e-61 | -8.615850e-47 |
| Msa0138890 | Msa0717380 | 0.828578 | 8.317538e-55 | -8.615850e-47 |
| Msa0138890 | Msa0729200 | 0.836317 | 1.004375e-56 | -8.615850e-47 |
| Msa0138890 | Msa0752910 | 0.801537 | 8.591806e-49 | -8.615850e-47 |
| Msa0138890 | Msa0766080 | 0.870728 | 1.171766e-66 | -8.615850e-47 |
| Msa0138890 | Msa0769590 | 0.825622 | 4.240090e-54 | -8.615850e-47 |
| Msa0138890 | Msa0781080 | 0.887389 | 1.489076e-72 | -8.615850e-47 |
| Msa0138890 | Msa0781310 | 0.862705 | 4.192951e-64 | -8.615850e-47 |
| Msa0138890 | Msa0785130 | 0.801743 | 7.797880e-49 | -8.615850e-47 |
| Msa0138890 | Msa0786650 | 0.842559 | 2.402037e-58 | -8.615850e-47 |
| Msa0138890 | Msa0786660 | 0.811093 | 8.318652e-51 | -8.615850e-47 |
| Msa0138890 | Msa0788380 | 0.857273 | 1.825859e-62 | -8.615850e-47 |
| Msa0138890 | Msa0799830 | 0.829835 | 4.121767e-55 | -8.615850e-47 |
| Msa0138890 | Msa0802480 | 0.815445 | 9.209209e-52 | -8.615850e-47 |
| Msa0138890 | Msa0822580 | 0.871669 | 5.730829e-67 | -8.615850e-47 |
| Msa0138890 | Msa0827380 | 0.848375 | 6.379112e-60 | -8.615850e-47 |
| Msa0138890 | Msa0860860 | 0.860197 | 2.443822e-63 | -8.615850e-47 |
| Msa0138890 | Msa0861320 | 0.887766 | 1.069262e-72 | -8.615850e-47 |
| Msa0138890 | Msa0888810 | 0.832104 | 1.143280e-55 | -8.615850e-47 |
| Msa0138890 | Msa0915540 | 0.848620 | 5.459109e-60 | -8.615850e-47 |
| Msa0138890 | Msa0945480 | 0.851559 | 8.201333e-61 | -8.615850e-47 |
| Msa0138890 | Msa0970110 | 0.800018 | 1.754302e-48 | -8.615850e-47 |
| Msa0138890 | Msa1021120 | 0.842273 | 2.859459e-58 | -8.615850e-47 |
| Msa0138890 | Msa1037290 | 0.861922 | 7.297593e-64 | -8.615850e-47 |
| Msa0138890 | Msa1039520 | 0.801080 | 1.065814e-48 | -8.615850e-47 |
| Msa0138890 | Msa1040160 | 0.825462 | 4.626703e-54 | -8.615850e-47 |
| Msa0138890 | Msa1041680 | 0.837718 | 4.406473e-57 | -8.615850e-47 |
| Msa0138890 | Msa1048690 | 0.802982 | 4.332365e-49 | -8.615850e-47 |
| Msa0138890 | Msa1058700 | 0.801663 | 8.095753e-49 | -8.615850e-47 |
| Msa0138890 | Msa1080350 | 0.805197 | 1.499254e-49 | -8.615850e-47 |
| Msa0138890 | Msa1082170 | 0.861922 | 7.297593e-64 | -8.615850e-47 |
| Msa0138890 | Msa1083370 | 0.824200 | 9.181567e-54 | -8.615850e-47 |
| Msa0138890 | Msa1089220 | 0.813306 | 2.736814e-51 | -8.615850e-47 |
| Msa0138890 | Msa1094380 | 0.819385 | 1.194125e-52 | -8.615850e-47 |
| Msa0138890 | Msa1126520 | 0.842287 | 2.835399e-58 | -8.615850e-47 |
| Msa0138890 | Msa1164150 | 0.839582 | 1.453980e-57 | -8.615850e-47 |
| Msa0138890 | Msa1166570 | 0.841739 | 3.957895e-58 | -8.615850e-47 |
| Msa0138890 | Msa1186030 | 0.827030 | 1.959245e-54 | -8.615850e-47 |
| Msa0138890 | Msa1195300 | 0.811885 | 5.596851e-51 | -8.615850e-47 |
| Msa0138890 | Msa1218170 | 0.953299 | 3.719833e-111 | -8.615850e-47 |
| Msa0138890 | Msa1228490 | 0.810532 | 1.099830e-50 | -8.615850e-47 |
| Msa0138890 | Msa1240270 | 0.848183 | 7.211404e-60 | -8.615850e-47 |
| Msa0138890 | Msa1256840 | 0.821247 | 4.469854e-53 | -8.615850e-47 |
| Msa0138890 | Msa1311400 | 0.827098 | 1.887198e-54 | -8.615850e-47 |
| Msa0138890 | Msa1316680 | 0.805076 | 1.589190e-49 | -8.615850e-47 |
| Msa0138890 | Msa1332250 | 0.804734 | 1.874037e-49 | -8.615850e-47 |
| Msa0138890 | Msa1340980 | 0.812578 | 3.951677e-51 | -8.615850e-47 |
| Msa0138890 | Msa1356790 | 0.845655 | 3.547183e-59 | -8.615850e-47 |
| Msa0138890 | Msa1362790 | 0.813898 | 2.027695e-51 | -8.615850e-47 |
| Msa0138890 | Msa1364110 | 0.813818 | 2.110998e-51 | -8.615850e-47 |
| Msa0138890 | Msa1368920 | 0.862437 | 5.071068e-64 | -8.615850e-47 |
| Msa0138890 | Msa1369190 | 0.825973 | 3.499340e-54 | -8.615850e-47 |
| Msa0138890 | Msa1372270 | 0.810569 | 1.080027e-50 | -8.615850e-47 |
| Msa0138890 | Msa1374240 | 0.868930 | 4.528135e-66 | -8.615850e-47 |
| Msa0138890 | Msa1392590 | 0.864291 | 1.351484e-64 | -8.615850e-47 |
| Msa0138890 | Msa1403910 | 0.813613 | 2.342545e-51 | -8.615850e-47 |
| Msa0138890 | Msa1406080 | 0.856456 | 3.178423e-62 | -8.615850e-47 |
| Msa0138890 | Msa1418770 | 0.831905 | 1.280316e-55 | -8.615850e-47 |
| Msa0138890 | Msa1426370 | 0.825774 | 3.901512e-54 | -8.615850e-47 |
| Msa0138890 | Msa1426490 | 0.819840 | 9.403081e-53 | -8.615850e-47 |
| Msa0138890 | Msa1462860 | 0.801634 | 8.207279e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138890 | MtrunA17_Chr4g0067861 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 1.98e-89 | 255 |
| Msa0138890 | MtrunA17_Chr1g0187471 | 93.985 | 133 | 8 | 0 | 1 | 133 | 1 | 133 | 2.43e-87 | 250 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138890 | AT2G20450.1 | 82.707 | 133 | 23 | 0 | 1 | 133 | 1 | 133 | 8.37e-76 | 221 |
| Msa0138890 | AT4G27090.1 | 83.077 | 130 | 22 | 0 | 1 | 130 | 1 | 130 | 7.76e-75 | 219 |
Find 52 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGTGAATGAGCGAAATT+AGG | 0.188684 | 1_3:+72113922 | None:intergenic |
| GAGAGCCTCTTGAAATTTAT+AGG | 0.257790 | 1_3:+72111682 | None:intergenic |
| TCTCTATTGTTACTACTAAT+CGG | 0.302417 | 1_3:-72110962 | Msa0138890:three_prime_UTR |
| GTTTACACGGGTGCAACTTT+AGG | 0.307065 | 1_3:-72110939 | Msa0138890:three_prime_UTR |
| ATAGGGGACCTCTCCATATC+TGG | 0.311714 | 1_3:+72111700 | None:intergenic |
| CTCTCAAAATAAATATTTCT+AGG | 0.313038 | 1_3:+72111153 | None:intergenic |
| TAAAATTACATACTCTAGTT+TGG | 0.313540 | 1_3:+72113663 | None:intergenic |
| AGAGCCTCTTGAAATTTATA+GGG | 0.323900 | 1_3:+72111683 | None:intergenic |
| TAAGAGAGTTCCGAAGAAAA+AGG | 0.359607 | 1_3:-72111635 | Msa0138890:CDS |
| TTCAAGAGATTCGTTGAGAT+TGG | 0.364154 | 1_3:-72113752 | Msa0138890:CDS |
| AGAGTGAATGAGCGAAATTA+GGG | 0.372015 | 1_3:+72113923 | None:intergenic |
| CTCTATTGTTACTACTAATC+GGG | 0.386937 | 1_3:-72110961 | Msa0138890:three_prime_UTR |
| TCTAGGGTTTCTGAGATTCA+AGG | 0.399505 | 1_3:+72113884 | None:intergenic |
| GCAAATCATAAGCAAGCAAA+AGG | 0.405033 | 1_3:+72111079 | None:intergenic |
| CTCCAAGTTGCATATCGGTT+TGG | 0.420012 | 1_3:-72111108 | Msa0138890:three_prime_UTR |
| TGCAGAGGGCAGGCGTTGTT+AGG | 0.425389 | 1_3:-72111308 | Msa0138890:intron |
| TCTTATTGATGCTCCAGATA+TGG | 0.437391 | 1_3:-72111713 | Msa0138890:CDS |
| ATGTATCAAAAGAAATTCAT+AGG | 0.438699 | 1_3:+72111219 | None:intergenic |
| CGCCAAACCGATATGCAACT+TGG | 0.444323 | 1_3:+72111106 | None:intergenic |
| ATCAACTACGGAGAAAACTA+TGG | 0.450153 | 1_3:-72113716 | Msa0138890:CDS |
| GATCATGTTGGCAAAGATCA+AGG | 0.463745 | 1_3:-72111414 | Msa0138890:intron |
| TACTACTAATCGGGTTTACA+CGG | 0.468192 | 1_3:-72110952 | Msa0138890:three_prime_UTR |
| GCTGAGGAAGACTGCAGCTT+AGG | 0.478340 | 1_3:-72111271 | Msa0138890:exon |
| AGTTTCTCCAAGTTGCATAT+CGG | 0.489678 | 1_3:-72111113 | Msa0138890:three_prime_UTR |
| GAACCTATCAAAATCATTGA+GGG | 0.493162 | 1_3:+72111439 | None:intergenic |
| AACTGATTGTGAAGAAGAGA+AGG | 0.499378 | 1_3:-72111466 | Msa0138890:CDS |
| GTACCAACCAGCAGCTTCCA+TGG | 0.503198 | 1_3:+72111600 | None:intergenic |
| AGAGATTCGTTGAGATTGGA+AGG | 0.504435 | 1_3:-72113748 | Msa0138890:CDS |
| CTGCAGCTTGAGATTTCTAT+CGG | 0.533894 | 1_3:+72111028 | None:intergenic |
| TGAACCTATCAAAATCATTG+AGG | 0.534372 | 1_3:+72111438 | None:intergenic |
| ATCAAAGCCATGGAAGCTGC+TGG | 0.540613 | 1_3:-72111607 | Msa0138890:intron |
| AAAGGATCTCATCAAAGCCA+TGG | 0.551595 | 1_3:-72111617 | Msa0138890:CDS |
| CTGCAGATGATGTTAACTCC+TGG | 0.554551 | 1_3:-72111011 | Msa0138890:three_prime_UTR |
| AAACAGATGTTAAGAACAAG+TGG | 0.554885 | 1_3:-72111511 | Msa0138890:intron |
| ATCTCAACGAATCTCTTGAA+AGG | 0.558154 | 1_3:+72113755 | None:intergenic |
| CAAATCATAAGCAAGCAAAA+GGG | 0.558517 | 1_3:+72111080 | None:intergenic |
| ACAAGTGGGAGAAGAGCTCA+TGG | 0.569835 | 1_3:-72111496 | Msa0138890:CDS |
| TGATAGGTTCAAGATCATGT+TGG | 0.577188 | 1_3:-72111426 | Msa0138890:CDS |
| GGCAAGAGCTTGCTAAGCTG+AGG | 0.578125 | 1_3:-72111287 | Msa0138890:CDS |
| ACTACTAATCGGGTTTACAC+GGG | 0.596505 | 1_3:-72110951 | Msa0138890:three_prime_UTR |
| TTACGGCTTATGCAGAGGGC+AGG | 0.597350 | 1_3:-72111318 | Msa0138890:intron |
| AAGTGGGAGAAGAGCTCATG+GGG | 0.603802 | 1_3:-72111494 | Msa0138890:CDS |
| AGGGTTGCTCTGATCAACTA+CGG | 0.605760 | 1_3:-72113728 | Msa0138890:CDS |
| GAGATTCGTTGAGATTGGAA+GGG | 0.623944 | 1_3:-72113747 | Msa0138890:CDS |
| AAATGACATTAAAGAAAACC+AGG | 0.625697 | 1_3:+72110993 | None:intergenic |
| GAGCCTCTTGAAATTTATAG+GGG | 0.637102 | 1_3:+72111684 | None:intergenic |
| AACAGATGTTAAGAACAAGT+GGG | 0.646009 | 1_3:-72111510 | Msa0138890:intron |
| CAAGTGGGAGAAGAGCTCAT+GGG | 0.654042 | 1_3:-72111495 | Msa0138890:CDS |
| ACTGATTGTGAAGAAGAGAA+GGG | 0.654800 | 1_3:-72111465 | Msa0138890:CDS |
| GGTCCCCTATAAATTTCAAG+AGG | 0.658008 | 1_3:-72111687 | Msa0138890:CDS |
| GATTCAAGGTTGAAGCAGAG+AGG | 0.669044 | 1_3:+72113898 | None:intergenic |
| TTGATGCTCCAGATATGGAG+AGG | 0.669858 | 1_3:-72111708 | Msa0138890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAACAAAAGAAA+TGG | + | chr1_3:72111190-72111209 | None:intergenic | 10.0% |
| !! | ATCTTTATAATAAAAAAACA+CGG | + | chr1_3:72111704-72111723 | None:intergenic | 10.0% |
| !!! | AGTTTTTTAATGTTAAATTT+AGG | - | chr1_3:72112343-72112362 | Msa0138890:intron | 10.0% |
| !!! | AAAGTTTGAATTTTTTTATC+TGG | - | chr1_3:72111280-72111299 | Msa0138890:CDS | 15.0% |
| !!! | TATTTCTATGACAAAAAATA+AGG | + | chr1_3:72111608-72111627 | None:intergenic | 15.0% |
| !! | ATTAAGTCATTTATTCAAAT+TGG | - | chr1_3:72111678-72111697 | Msa0138890:CDS | 15.0% |
| !!! | AAAAAATGAATTTTTTCATC+TGG | - | chr1_3:72111772-72111791 | Msa0138890:intron | 15.0% |
| !!! | AAAAATGAATTTTTTCATCT+GGG | - | chr1_3:72111773-72111792 | Msa0138890:intron | 15.0% |
| !!! | ATTGATATCTTGTTATATTA+AGG | - | chr1_3:72112463-72112482 | Msa0138890:intron | 15.0% |
| !!! | TTAAAACAATCTTATTTCTT+AGG | - | chr1_3:72112598-72112617 | Msa0138890:intron | 15.0% |
| !! | TGTTTACTAACTAATTTAAA+GGG | + | chr1_3:72112912-72112931 | None:intergenic | 15.0% |
| !! | TTGTTTACTAACTAATTTAA+AGG | + | chr1_3:72112913-72112932 | None:intergenic | 15.0% |
| !! | TAAAATTACATACTCTAGTT+TGG | + | chr1_3:72111162-72111181 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGTTCTATTTCA+AGG | - | chr1_3:72111393-72111412 | Msa0138890:intron | 20.0% |
| !! | TAAATAGAACAAATCAAAAC+TGG | + | chr1_3:72111887-72111906 | None:intergenic | 20.0% |
| !!! | GTATAAACTATTTCTATAAC+AGG | + | chr1_3:72112111-72112130 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCATAT+AGG | - | chr1_3:72112173-72112192 | Msa0138890:intron | 20.0% |
| !! | ATATTTGTAATCAAAATGCA+GGG | + | chr1_3:72112199-72112218 | None:intergenic | 20.0% |
| !! | AATATTTGTAATCAAAATGC+AGG | + | chr1_3:72112200-72112219 | None:intergenic | 20.0% |
| !! | AATCTTTCTAATGAAAATAC+AGG | + | chr1_3:72112697-72112716 | None:intergenic | 20.0% |
| !! | TTGCAAATATATGAATGTAA+TGG | - | chr1_3:72112864-72112883 | Msa0138890:intron | 20.0% |
| !! | CAGAAACAAAAAAAAAGATT+AGG | + | chr1_3:72113452-72113471 | None:intergenic | 20.0% |
| !! | TTTCTGATGCTTTATAATTA+CGG | - | chr1_3:72113487-72113506 | Msa0138890:intron | 20.0% |
| !! | ATGTATCAAAAGAAATTCAT+AGG | + | chr1_3:72113606-72113625 | None:intergenic | 20.0% |
| !! | CTCTCAAAATAAATATTTCT+AGG | + | chr1_3:72113672-72113691 | None:intergenic | 20.0% |
| ! | AGCAAATGAATGTTAATTGA+AGG | + | chr1_3:72111034-72111053 | None:intergenic | 25.0% |
| ! | AGAAACAAAACCTACAAATT+GGG | + | chr1_3:72111243-72111262 | None:intergenic | 25.0% |
| ! | AAGAAACAAAACCTACAAAT+TGG | + | chr1_3:72111244-72111263 | None:intergenic | 25.0% |
| ! | GCATTGTCAGAAAAAATTTA+TGG | - | chr1_3:72111329-72111348 | Msa0138890:intron | 25.0% |
| ! | TTTATGGTAGAATTTGATTG+AGG | - | chr1_3:72111345-72111364 | Msa0138890:intron | 25.0% |
| ! | ACTTAACTTAATGCAAAGAA+TGG | + | chr1_3:72111429-72111448 | None:intergenic | 25.0% |
| !!! | AGTTAAGTTTTGAACTGATT+TGG | - | chr1_3:72111441-72111460 | Msa0138890:CDS | 25.0% |
| !!! | TGTTTTAGGTAGTGATATTA+AGG | - | chr1_3:72111464-72111483 | Msa0138890:CDS | 25.0% |
| !!! | CAGTTTTTTTTTTTCTGGTA+AGG | + | chr1_3:72111824-72111843 | None:intergenic | 25.0% |
| ! | TACCAGAAAAAAAAAAACTG+TGG | - | chr1_3:72111824-72111843 | Msa0138890:intron | 25.0% |
| !!! | TACCACAGTTTTTTTTTTTC+TGG | + | chr1_3:72111829-72111848 | None:intergenic | 25.0% |
| !! | TGTTCATGTTTTGCATTTAT+TGG | - | chr1_3:72111916-72111935 | Msa0138890:intron | 25.0% |
| !!! | ATTGGTGTTTTGAACTAATT+TGG | - | chr1_3:72111934-72111953 | Msa0138890:intron | 25.0% |
| !! | TTGAACTAATTTGGTAATCT+AGG | - | chr1_3:72111943-72111962 | Msa0138890:intron | 25.0% |
| !!! | TAATCTAGGTATTGATGTAT+TGG | - | chr1_3:72111957-72111976 | Msa0138890:intron | 25.0% |
| !!! | AATCTAGGTATTGATGTATT+GGG | - | chr1_3:72111958-72111977 | Msa0138890:intron | 25.0% |
| !!! | TTTTGATTTGTTCTACTTCA+AGG | - | chr1_3:72112383-72112402 | Msa0138890:intron | 25.0% |
| !!! | TTGAGCAAATTTGTTAATCT+CGG | - | chr1_3:72112439-72112458 | Msa0138890:intron | 25.0% |
| ! | TATTTCTTAGGTTATACCTA+AGG | - | chr1_3:72112610-72112629 | Msa0138890:intron | 25.0% |
| ! | TTTAGGAACAACAAAAATGT+GGG | + | chr1_3:72112824-72112843 | None:intergenic | 25.0% |
| ! | ATTTAGGAACAACAAAAATG+TGG | + | chr1_3:72112825-72112844 | None:intergenic | 25.0% |
| ! | AATGAACTTGACACTAATTT+AGG | + | chr1_3:72112841-72112860 | None:intergenic | 25.0% |
| ! | TTTAAAGGGAATAAGAAACA+TGG | + | chr1_3:72112898-72112917 | None:intergenic | 25.0% |
| ! | AGTAATAAATAGTGCAGTAT+TGG | + | chr1_3:72113015-72113034 | None:intergenic | 25.0% |
| ! | ATCAAGAAATATTTGCTTGT+GGG | + | chr1_3:72113054-72113073 | None:intergenic | 25.0% |
| !! | GAATTTCTTTTGATACATCT+TGG | - | chr1_3:72113608-72113627 | Msa0138890:intron | 25.0% |
| ! | AAATGACATTAAAGAAAACC+AGG | + | chr1_3:72113832-72113851 | None:intergenic | 25.0% |
| ! | TCTCTATTGTTACTACTAAT+CGG | - | chr1_3:72113860-72113879 | Msa0138890:intron | 25.0% |
| ATATGATGAGAAATTGTGCT+CGG | + | chr1_3:72110987-72111006 | None:intergenic | 30.0% | |
| GTTAATTGAAGGAGAAAACT+TGG | + | chr1_3:72111023-72111042 | None:intergenic | 30.0% | |
| !!! | TTTAGTTTTTGTATAGCTGC+TGG | - | chr1_3:72111370-72111389 | Msa0138890:intron | 30.0% |
| !!! | TTGAACTGATTTGGTGTTTT+AGG | - | chr1_3:72111450-72111469 | Msa0138890:CDS | 30.0% |
| !!! | GGTGTTGATAAATGTTTTCA+TGG | - | chr1_3:72111794-72111813 | Msa0138890:intron | 30.0% |
| !! | GCTGTTTTCATAAGTTATCT+TGG | + | chr1_3:72112049-72112068 | None:intergenic | 30.0% |
| TTGTCTGCATCATTTATGTT+TGG | - | chr1_3:72112223-72112242 | Msa0138890:intron | 30.0% | |
| ! | AACTACCAGATTCTTTTTCT+GGG | + | chr1_3:72112327-72112346 | None:intergenic | 30.0% |
| ! | AAACTACCAGATTCTTTTTC+TGG | + | chr1_3:72112328-72112347 | None:intergenic | 30.0% |
| !! | TTTAGGTTTTCTATAGCTTC+TGG | - | chr1_3:72112360-72112379 | Msa0138890:intron | 30.0% |
| ! | TGTCTGTGTTTTGCATTAAA+TGG | - | chr1_3:72112412-72112431 | Msa0138890:intron | 30.0% |
| ATCTCCTAGCATAAATACTT+GGG | - | chr1_3:72112490-72112509 | Msa0138890:intron | 30.0% | |
| TTGAAACTGCATAGCATAAT+TGG | - | chr1_3:72112767-72112786 | Msa0138890:intron | 30.0% | |
| TTCATTTGAGCACTATTCAT+GGG | + | chr1_3:72112962-72112981 | None:intergenic | 30.0% | |
| ATTCATTTGAGCACTATTCA+TGG | + | chr1_3:72112963-72112982 | None:intergenic | 30.0% | |
| TCAAGAAATATTTGCTTGTG+GGG | + | chr1_3:72113053-72113072 | None:intergenic | 30.0% | |
| GATCAAGAAATATTTGCTTG+TGG | + | chr1_3:72113055-72113074 | None:intergenic | 30.0% | |
| TTTGTGTACTATATGTTGAC+AGG | - | chr1_3:72113085-72113104 | Msa0138890:intron | 30.0% | |
| AGAGCCTCTTGAAATTTATA+GGG | + | chr1_3:72113142-72113161 | None:intergenic | 30.0% | |
| ! | TTGATGAGATCCTTTTTCTT+CGG | + | chr1_3:72113200-72113219 | None:intergenic | 30.0% |
| ! | ATGCAGTTTTTCACAAAAGT+TGG | + | chr1_3:72113247-72113266 | None:intergenic | 30.0% |
| AAACAGATGTTAAGAACAAG+TGG | - | chr1_3:72113311-72113330 | Msa0138890:intron | 30.0% | |
| AACAGATGTTAAGAACAAGT+GGG | - | chr1_3:72113312-72113331 | Msa0138890:intron | 30.0% | |
| GAACCTATCAAAATCATTGA+GGG | + | chr1_3:72113386-72113405 | None:intergenic | 30.0% | |
| TGAACCTATCAAAATCATTG+AGG | + | chr1_3:72113387-72113406 | None:intergenic | 30.0% | |
| CAAATCATAAGCAAGCAAAA+GGG | + | chr1_3:72113745-72113764 | None:intergenic | 30.0% | |
| !! | TTGCTTTTCAAGATGTTCTT+TGG | - | chr1_3:72113771-72113790 | Msa0138890:intron | 30.0% |
| CTCTATTGTTACTACTAATC+GGG | - | chr1_3:72113861-72113880 | Msa0138890:intron | 30.0% | |
| AGAGTGAATGAGCGAAATTA+GGG | + | chr1_3:72110902-72110921 | None:intergenic | 35.0% | |
| ACCCTAGAGAGAGAAAAAAA+TGG | - | chr1_3:72110953-72110972 | Msa0138890:three_prime_UTR | 35.0% | |
| !!! | GCCATTTTTTTCTCTCTCTA+GGG | + | chr1_3:72110957-72110976 | None:intergenic | 35.0% |
| ATCTCAACGAATCTCTTGAA+AGG | + | chr1_3:72111070-72111089 | None:intergenic | 35.0% | |
| TTCAAGAGATTCGTTGAGAT+TGG | - | chr1_3:72111070-72111089 | Msa0138890:three_prime_UTR | 35.0% | |
| ATCAACTACGGAGAAAACTA+TGG | - | chr1_3:72111106-72111125 | Msa0138890:three_prime_UTR | 35.0% | |
| GAATACTAAGCGTTTATGCA+AGG | + | chr1_3:72111498-72111517 | None:intergenic | 35.0% | |
| GCTGTCATCACAAGTTATAT+TGG | + | chr1_3:72111554-72111573 | None:intergenic | 35.0% | |
| ! | TAGAGTTGTCTGCATCTTTT+AGG | - | chr1_3:72111723-72111742 | Msa0138890:intron | 35.0% |
| !!! | TTGTCTGCATCTTTTAGGTT+TGG | - | chr1_3:72111728-72111747 | Msa0138890:intron | 35.0% |
| !!! | AGTTTTTTGTTCGCGACTTT+AGG | - | chr1_3:72111848-72111867 | Msa0138890:intron | 35.0% |
| TGTATTGGGATATTATTCCC+CGG | - | chr1_3:72111972-72111991 | Msa0138890:intron | 35.0% | |
| TGAATACCAAGTGTTTATGC+CGG | + | chr1_3:72111994-72112013 | None:intergenic | 35.0% | |
| TATTGCCCAGAAAAAGAATC+TGG | - | chr1_3:72112319-72112338 | Msa0138890:intron | 35.0% | |
| AGTATTTATGCTAGGAGATG+AGG | + | chr1_3:72112489-72112508 | None:intergenic | 35.0% | |
| CATCTCCTAGCATAAATACT+TGG | - | chr1_3:72112489-72112508 | Msa0138890:intron | 35.0% | |
| GATTCCCAAGTATTTATGCT+AGG | + | chr1_3:72112497-72112516 | None:intergenic | 35.0% | |
| CATAAGCTCTTGTCAAGATA+GGG | + | chr1_3:72112636-72112655 | None:intergenic | 35.0% | |
| ATGAAAATACAGGCTGTAGT+TGG | + | chr1_3:72112687-72112706 | None:intergenic | 35.0% | |
| TGCATAGCATAATTGGTGTA+GGG | - | chr1_3:72112774-72112793 | Msa0138890:intron | 35.0% | |
| TAGTGCTCAAATGAATGTTG+TGG | - | chr1_3:72112967-72112986 | Msa0138890:intron | 35.0% | |
| CAAGAAATATTTGCTTGTGG+GGG | + | chr1_3:72113052-72113071 | None:intergenic | 35.0% | |
| TCTTATTGATGCTCCAGATA+TGG | - | chr1_3:72113109-72113128 | Msa0138890:intron | 35.0% | |
| GAGCCTCTTGAAATTTATAG+GGG | + | chr1_3:72113141-72113160 | None:intergenic | 35.0% | |
| GAGAGCCTCTTGAAATTTAT+AGG | + | chr1_3:72113143-72113162 | None:intergenic | 35.0% | |
| TAAGAGAGTTCCGAAGAAAA+AGG | - | chr1_3:72113187-72113206 | Msa0138890:intron | 35.0% | |
| AACTGATTGTGAAGAAGAGA+AGG | - | chr1_3:72113356-72113375 | Msa0138890:intron | 35.0% | |
| ACTGATTGTGAAGAAGAGAA+GGG | - | chr1_3:72113357-72113376 | Msa0138890:intron | 35.0% | |
| TGATAGGTTCAAGATCATGT+TGG | - | chr1_3:72113396-72113415 | Msa0138890:intron | 35.0% | |
| TATAATTACGGCTTATGCAG+AGG | - | chr1_3:72113499-72113518 | Msa0138890:intron | 35.0% | |
| ATAATTACGGCTTATGCAGA+GGG | - | chr1_3:72113500-72113519 | Msa0138890:intron | 35.0% | |
| AGTTTCTCCAAGTTGCATAT+CGG | - | chr1_3:72113709-72113728 | Msa0138890:CDS | 35.0% | |
| GCAAATCATAAGCAAGCAAA+AGG | + | chr1_3:72113746-72113765 | None:intergenic | 35.0% | |
| TACTACTAATCGGGTTTACA+CGG | - | chr1_3:72113870-72113889 | Msa0138890:exon | 35.0% | |
| GAGAGTGAATGAGCGAAATT+AGG | + | chr1_3:72110903-72110922 | None:intergenic | 40.0% | |
| !! | TCTAGGGTTTCTGAGATTCA+AGG | + | chr1_3:72110941-72110960 | None:intergenic | 40.0% |
| !!! | CGCCATTTTTTTCTCTCTCT+AGG | + | chr1_3:72110958-72110977 | None:intergenic | 40.0% |
| AGAGATTCGTTGAGATTGGA+AGG | - | chr1_3:72111074-72111093 | Msa0138890:three_prime_UTR | 40.0% | |
| GAGATTCGTTGAGATTGGAA+GGG | - | chr1_3:72111075-72111094 | Msa0138890:three_prime_UTR | 40.0% | |
| CCTACAAATTGGGTACAAGA+TGG | + | chr1_3:72111233-72111252 | None:intergenic | 40.0% | |
| CCATCTTGTACCCAATTTGT+AGG | - | chr1_3:72111230-72111249 | Msa0138890:three_prime_UTR | 40.0% | |
| AGCGTTTATGCAAGGAGATA+AGG | + | chr1_3:72111490-72111509 | None:intergenic | 40.0% | |
| AATACCAAGTGTTTATGCCG+GGG | + | chr1_3:72111992-72112011 | None:intergenic | 40.0% | |
| GAATACCAAGTGTTTATGCC+GGG | + | chr1_3:72111993-72112012 | None:intergenic | 40.0% | |
| ATCAAAATGCAGGGCCTATA+TGG | + | chr1_3:72112190-72112209 | None:intergenic | 40.0% | |
| GCATAAGCTCTTGTCAAGAT+AGG | + | chr1_3:72112637-72112656 | None:intergenic | 40.0% | |
| !! | TGTCTGCAGTGTTGATTAGT+TGG | - | chr1_3:72112721-72112740 | Msa0138890:intron | 40.0% |
| CTGCATAGCATAATTGGTGT+AGG | - | chr1_3:72112773-72112792 | Msa0138890:intron | 40.0% | |
| TAGCATAATTGGTGTAGGGA+CGG | - | chr1_3:72112778-72112797 | Msa0138890:intron | 40.0% | |
| ATAGTACACAAACTCAGCGA+TGG | + | chr1_3:72113077-72113096 | None:intergenic | 40.0% | |
| GGTCCCCTATAAATTTCAAG+AGG | - | chr1_3:72113135-72113154 | Msa0138890:intron | 40.0% | |
| AAAGGATCTCATCAAAGCCA+TGG | - | chr1_3:72113205-72113224 | Msa0138890:intron | 40.0% | |
| !! | CAGCCCTCAATGATTTTGAT+AGG | - | chr1_3:72113380-72113399 | Msa0138890:intron | 40.0% |
| GATCATGTTGGCAAAGATCA+AGG | - | chr1_3:72113408-72113427 | Msa0138890:intron | 40.0% | |
| CTGCAGCTTGAGATTTCTAT+CGG | + | chr1_3:72113797-72113816 | None:intergenic | 40.0% | |
| ACTACTAATCGGGTTTACAC+GGG | - | chr1_3:72113871-72113890 | Msa0138890:exon | 40.0% | |
| GATTCAAGGTTGAAGCAGAG+AGG | + | chr1_3:72110927-72110946 | None:intergenic | 45.0% | |
| AGGGTTGCTCTGATCAACTA+CGG | - | chr1_3:72111094-72111113 | Msa0138890:three_prime_UTR | 45.0% | |
| TATTCCCCGGCATAAACACT+TGG | - | chr1_3:72111985-72112004 | Msa0138890:intron | 45.0% | |
| TCTTGTCAAGATAGGGCCTT+AGG | + | chr1_3:72112629-72112648 | None:intergenic | 45.0% | |
| GTTGTGGTTTCATTGCATCC+AGG | - | chr1_3:72112983-72113002 | Msa0138890:intron | 45.0% | |
| TTGATGCTCCAGATATGGAG+AGG | - | chr1_3:72113114-72113133 | Msa0138890:intron | 45.0% | |
| ! | CTCCAAGTTGCATATCGGTT+TGG | - | chr1_3:72113714-72113733 | Msa0138890:CDS | 45.0% |
| CTGCAGATGATGTTAACTCC+TGG | - | chr1_3:72113811-72113830 | Msa0138890:intron | 45.0% | |
| GTTTACACGGGTGCAACTTT+AGG | - | chr1_3:72113883-72113902 | Msa0138890:five_prime_UTR | 45.0% | |
| !! | GTGTAGGGACGGAAGCATTT+CGG | - | chr1_3:72112789-72112808 | Msa0138890:intron | 50.0% |
| !! | TGTAGGGACGGAAGCATTTC+GGG | - | chr1_3:72112790-72112809 | Msa0138890:intron | 50.0% |
| !! | GTGCAGTATTGGCTCAAACC+TGG | + | chr1_3:72113004-72113023 | None:intergenic | 50.0% |
| ATAGGGGACCTCTCCATATC+TGG | + | chr1_3:72113125-72113144 | None:intergenic | 50.0% | |
| ATCAAAGCCATGGAAGCTGC+TGG | - | chr1_3:72113215-72113234 | Msa0138890:intron | 50.0% | |
| ACAAGTGGGAGAAGAGCTCA+TGG | - | chr1_3:72113326-72113345 | Msa0138890:intron | 50.0% | |
| CAAGTGGGAGAAGAGCTCAT+GGG | - | chr1_3:72113327-72113346 | Msa0138890:intron | 50.0% | |
| AAGTGGGAGAAGAGCTCATG+GGG | - | chr1_3:72113328-72113347 | Msa0138890:intron | 50.0% | |
| CGCCAAACCGATATGCAACT+TGG | + | chr1_3:72113719-72113738 | None:intergenic | 50.0% | |
| !! | GTAGGGACGGAAGCATTTCG+GGG | - | chr1_3:72112791-72112810 | Msa0138890:intron | 55.0% |
| !! | TAGGGACGGAAGCATTTCGG+GGG | - | chr1_3:72112792-72112811 | Msa0138890:intron | 55.0% |
| AAGCCATGGAAGCTGCTGGT+TGG | - | chr1_3:72113219-72113238 | Msa0138890:intron | 55.0% | |
| GTACCAACCAGCAGCTTCCA+TGG | + | chr1_3:72113225-72113244 | None:intergenic | 55.0% | |
| TTACGGCTTATGCAGAGGGC+AGG | - | chr1_3:72113504-72113523 | Msa0138890:intron | 55.0% | |
| !! | GGCAAGAGCTTGCTAAGCTG+AGG | - | chr1_3:72113535-72113554 | Msa0138890:intron | 55.0% |
| GCTGAGGAAGACTGCAGCTT+AGG | - | chr1_3:72113551-72113570 | Msa0138890:intron | 55.0% | |
| ! | TGCAGAGGGCAGGCGTTGTT+AGG | - | chr1_3:72113514-72113533 | Msa0138890:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72110894 | 72113950 | 72110894 | ID=Msa0138890;Name=Msa0138890 |
| chr1_3 | mRNA | 72110894 | 72113950 | 72110894 | ID=Msa0138890-mRNA-1;Parent=Msa0138890;Name=Msa0138890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=78|1|1|1|1|1|5|378|133 |
| chr1_3 | exon | 72110894 | 72111325 | 72110894 | ID=Msa0138890-mRNA-1:exon:25152;Parent=Msa0138890-mRNA-1 |
| chr1_3 | exon | 72111415 | 72111527 | 72111415 | ID=Msa0138890-mRNA-1:exon:25151;Parent=Msa0138890-mRNA-1 |
| chr1_3 | exon | 72111608 | 72111737 | 72111608 | ID=Msa0138890-mRNA-1:exon:25150;Parent=Msa0138890-mRNA-1 |
| chr1_3 | exon | 72113676 | 72113777 | 72113676 | ID=Msa0138890-mRNA-1:exon:25149;Parent=Msa0138890-mRNA-1 |
| chr1_3 | exon | 72113870 | 72113950 | 72113870 | ID=Msa0138890-mRNA-1:exon:25148;Parent=Msa0138890-mRNA-1 |
| chr1_3 | five_prime_UTR | 72113873 | 72113950 | 72113873 | ID=Msa0138890-mRNA-1:five_prime_utr;Parent=Msa0138890-mRNA-1 |
| chr1_3 | CDS | 72113870 | 72113872 | 72113870 | ID=Msa0138890-mRNA-1:cds;Parent=Msa0138890-mRNA-1 |
| chr1_3 | CDS | 72113676 | 72113777 | 72113676 | ID=Msa0138890-mRNA-1:cds;Parent=Msa0138890-mRNA-1 |
| chr1_3 | CDS | 72111608 | 72111737 | 72111608 | ID=Msa0138890-mRNA-1:cds;Parent=Msa0138890-mRNA-1 |
| chr1_3 | CDS | 72111415 | 72111527 | 72111415 | ID=Msa0138890-mRNA-1:cds;Parent=Msa0138890-mRNA-1 |
| chr1_3 | CDS | 72111272 | 72111325 | 72111272 | ID=Msa0138890-mRNA-1:cds;Parent=Msa0138890-mRNA-1 |
| chr1_3 | three_prime_UTR | 72110894 | 72111271 | 72110894 | ID=Msa0138890-mRNA-1:three_prime_utr;Parent=Msa0138890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
