Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218170 | sp|P55844|RL14_PEA | 91.729 | 133 | 11 | 0 | 1 | 133 | 1 | 133 | 2.14e-83 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218170 | B7FL54 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 1.03e-85 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1218170 | 0.829604 | 4.690086e-55 | -8.615850e-47 |
| Msa0003330 | Msa1218170 | 0.807744 | 4.352555e-50 | -8.615850e-47 |
| Msa0003870 | Msa1218170 | 0.801186 | 1.014015e-48 | -8.615850e-47 |
| Msa0027590 | Msa1218170 | 0.865899 | 4.223564e-65 | -8.615850e-47 |
| Msa0040220 | Msa1218170 | 0.808060 | 3.728274e-50 | -8.615850e-47 |
| Msa0042480 | Msa1218170 | 0.821973 | 3.036281e-53 | -8.615850e-47 |
| Msa0044010 | Msa1218170 | 0.821330 | 4.276819e-53 | -8.615850e-47 |
| Msa0069080 | Msa1218170 | 0.800751 | 1.244021e-48 | -8.615850e-47 |
| Msa0072570 | Msa1218170 | 0.824767 | 6.753659e-54 | -8.615850e-47 |
| Msa0075350 | Msa1218170 | 0.869595 | 2.753379e-66 | -8.615850e-47 |
| Msa0077320 | Msa1218170 | 0.825435 | 4.693904e-54 | -8.615850e-47 |
| Msa0079590 | Msa1218170 | 0.824001 | 1.022430e-53 | -8.615850e-47 |
| Msa0113920 | Msa1218170 | 0.805244 | 1.465945e-49 | -8.615850e-47 |
| Msa0114570 | Msa1218170 | 0.876246 | 1.626673e-68 | -8.615850e-47 |
| Msa0604960 | Msa1218170 | 0.812128 | 4.954169e-51 | -8.615850e-47 |
| Msa0617540 | Msa1218170 | 0.801253 | 9.826200e-49 | -8.615850e-47 |
| Msa0622230 | Msa1218170 | 0.803915 | 2.775267e-49 | -8.615850e-47 |
| Msa0623370 | Msa1218170 | 0.832497 | 9.138569e-56 | -8.615850e-47 |
| Msa0653060 | Msa1218170 | 0.801584 | 8.404862e-49 | -8.615850e-47 |
| Msa0656410 | Msa1218170 | 0.806113 | 9.629793e-50 | -8.615850e-47 |
| Msa0681220 | Msa1218170 | 0.809900 | 1.505586e-50 | -8.615850e-47 |
| Msa0705800 | Msa1218170 | 0.894372 | 2.624178e-75 | -8.615850e-47 |
| Msa0712610 | Msa1218170 | 0.838427 | 2.894912e-57 | -8.615850e-47 |
| Msa0717380 | Msa1218170 | 0.843233 | 1.589401e-58 | -8.615850e-47 |
| Msa0758420 | Msa1218170 | 0.845176 | 4.780580e-59 | -8.615850e-47 |
| Msa0766080 | Msa1218170 | 0.837538 | 4.901108e-57 | -8.615850e-47 |
| Msa0781080 | Msa1218170 | 0.866821 | 2.153604e-65 | -8.615850e-47 |
| Msa0781310 | Msa1218170 | 0.851776 | 7.120560e-61 | -8.615850e-47 |
| Msa0786650 | Msa1218170 | 0.840433 | 8.722803e-58 | -8.615850e-47 |
| Msa0786660 | Msa1218170 | 0.803420 | 3.515746e-49 | -8.615850e-47 |
| Msa0788380 | Msa1218170 | 0.887325 | 1.575429e-72 | -8.615850e-47 |
| Msa0799830 | Msa1218170 | 0.855346 | 6.708716e-62 | -8.615850e-47 |
| Msa0802480 | Msa1218170 | 0.830815 | 2.374919e-55 | -8.615850e-47 |
| Msa0821070 | Msa1218170 | 0.801511 | 8.699731e-49 | -8.615850e-47 |
| Msa0822580 | Msa1218170 | 0.899240 | 2.411229e-77 | -8.615850e-47 |
| Msa0827380 | Msa1218170 | 0.845172 | 4.791836e-59 | -8.615850e-47 |
| Msa0838070 | Msa1218170 | 0.835648 | 1.484443e-56 | -8.615850e-47 |
| Msa0122550 | Msa1218170 | 0.833311 | 5.736737e-56 | -8.615850e-47 |
| Msa0138890 | Msa1218170 | 0.953299 | 3.719833e-111 | -8.615850e-47 |
| Msa0172930 | Msa1218170 | 0.860365 | 2.172906e-63 | -8.615850e-47 |
| Msa0175000 | Msa1218170 | 0.839180 | 1.848706e-57 | -8.615850e-47 |
| Msa0191450 | Msa1218170 | 0.869505 | 2.944339e-66 | -8.615850e-47 |
| Msa0191550 | Msa1218170 | 0.844267 | 8.404435e-59 | -8.615850e-47 |
| Msa0192750 | Msa1218170 | 0.800163 | 1.639296e-48 | -8.615850e-47 |
| Msa0194940 | Msa1218170 | 0.805042 | 1.615448e-49 | -8.615850e-47 |
| Msa0197980 | Msa1218170 | 0.807599 | 4.671477e-50 | -8.615850e-47 |
| Msa0210360 | Msa1218170 | 0.811102 | 8.282130e-51 | -8.615850e-47 |
| Msa0369410 | Msa1218170 | 0.817155 | 3.819232e-52 | -8.615850e-47 |
| Msa0376830 | Msa1218170 | 0.810454 | 1.143379e-50 | -8.615850e-47 |
| Msa0377520 | Msa1218170 | 0.813521 | 2.454217e-51 | -8.615850e-47 |
| Msa0426090 | Msa1218170 | 0.835283 | 1.836134e-56 | -8.615850e-47 |
| Msa0463520 | Msa1218170 | 0.813647 | 2.302527e-51 | -8.615850e-47 |
| Msa0468660 | Msa1218170 | 0.817491 | 3.208448e-52 | -8.615850e-47 |
| Msa0472480 | Msa1218170 | 0.842603 | 2.337665e-58 | -8.615850e-47 |
| Msa0475810 | Msa1218170 | 0.821934 | 3.100165e-53 | -8.615850e-47 |
| Msa0481520 | Msa1218170 | 0.843257 | 1.566217e-58 | -8.615850e-47 |
| Msa1021120 | Msa1218170 | 0.828208 | 1.021752e-54 | -8.615850e-47 |
| Msa1037290 | Msa1218170 | 0.862393 | 5.231812e-64 | -8.615850e-47 |
| Msa1040160 | Msa1218170 | 0.856907 | 2.342058e-62 | -8.615850e-47 |
| Msa1041680 | Msa1218170 | 0.866703 | 2.348828e-65 | -8.615850e-47 |
| Msa1058700 | Msa1218170 | 0.803166 | 3.969149e-49 | -8.615850e-47 |
| Msa1082170 | Msa1218170 | 0.891529 | 3.654613e-74 | -8.615850e-47 |
| Msa1083370 | Msa1218170 | 0.851404 | 9.072175e-61 | -8.615850e-47 |
| Msa1089220 | Msa1218170 | 0.827869 | 1.232852e-54 | -8.615850e-47 |
| Msa1094380 | Msa1218170 | 0.800039 | 1.737836e-48 | -8.615850e-47 |
| Msa1096900 | Msa1218170 | 0.817014 | 4.108432e-52 | -8.615850e-47 |
| Msa0239420 | Msa1218170 | 0.835369 | 1.746917e-56 | -8.615850e-47 |
| Msa0265250 | Msa1218170 | 0.828187 | 1.033241e-54 | -8.615850e-47 |
| Msa0281370 | Msa1218170 | 0.810049 | 1.398461e-50 | -8.615850e-47 |
| Msa0297830 | Msa1218170 | 0.864174 | 1.470093e-64 | -8.615850e-47 |
| Msa0298870 | Msa1218170 | 0.811554 | 6.607022e-51 | -8.615850e-47 |
| Msa0301220 | Msa1218170 | 0.827419 | 1.580828e-54 | -8.615850e-47 |
| Msa0321270 | Msa1218170 | 0.815598 | 8.517260e-52 | -8.615850e-47 |
| Msa0334140 | Msa1218170 | 0.836551 | 8.755540e-57 | -8.615850e-47 |
| Msa0335840 | Msa1218170 | 0.871087 | 8.925202e-67 | -8.615850e-47 |
| Msa1126520 | Msa1218170 | 0.856948 | 2.276935e-62 | -8.615850e-47 |
| Msa1164150 | Msa1218170 | 0.854733 | 1.011151e-61 | -8.615850e-47 |
| Msa1165640 | Msa1218170 | 0.808627 | 2.822611e-50 | -8.615850e-47 |
| Msa1166570 | Msa1218170 | 0.868360 | 6.917301e-66 | -8.615850e-47 |
| Msa1186030 | Msa1218170 | 0.860335 | 2.219143e-63 | -8.615850e-47 |
| Msa1206240 | Msa1218170 | 0.835802 | 1.357216e-56 | -8.615850e-47 |
| Msa1218170 | Msa1228490 | 0.801298 | 9.618448e-49 | -8.615850e-47 |
| Msa1218170 | Msa1240270 | 0.866186 | 3.426116e-65 | -8.615850e-47 |
| Msa1218170 | Msa1256840 | 0.817282 | 3.575741e-52 | -8.615850e-47 |
| Msa1218170 | Msa1258540 | 0.842545 | 2.421919e-58 | -8.615850e-47 |
| Msa1218170 | Msa1263620 | 0.826514 | 2.602546e-54 | -8.615850e-47 |
| Msa1218170 | Msa1301640 | 0.825506 | 4.517718e-54 | -8.615850e-47 |
| Msa1218170 | Msa1311400 | 0.845705 | 3.437290e-59 | -8.615850e-47 |
| Msa1218170 | Msa1332250 | 0.817806 | 2.724525e-52 | -8.615850e-47 |
| Msa1218170 | Msa1340980 | 0.803332 | 3.666753e-49 | -8.615850e-47 |
| Msa1218170 | Msa1356790 | 0.827748 | 1.318186e-54 | -8.615850e-47 |
| Msa1218170 | Msa1364110 | 0.837606 | 4.708185e-57 | -8.615850e-47 |
| Msa1218170 | Msa1368920 | 0.863853 | 1.850733e-64 | -8.615850e-47 |
| Msa1218170 | Msa1372270 | 0.810319 | 1.222577e-50 | -8.615850e-47 |
| Msa1218170 | Msa1374240 | 0.865423 | 5.968718e-65 | -8.615850e-47 |
| Msa1218170 | Msa1392590 | 0.845564 | 3.753813e-59 | -8.615850e-47 |
| Msa1218170 | Msa1403910 | 0.833423 | 5.379232e-56 | -8.615850e-47 |
| Msa1218170 | Msa1406080 | 0.845545 | 3.798336e-59 | -8.615850e-47 |
| Msa1218170 | Msa1418770 | 0.856340 | 3.437305e-62 | -8.615850e-47 |
| Msa1218170 | Msa1449160 | 0.809706 | 1.657166e-50 | -8.615850e-47 |
| Msa0517480 | Msa1218170 | 0.817560 | 3.095180e-52 | -8.615850e-47 |
| Msa0540480 | Msa1218170 | 0.813352 | 2.673062e-51 | -8.615850e-47 |
| Msa0573550 | Msa1218170 | 0.805392 | 1.364526e-49 | -8.615850e-47 |
| Msa0582070 | Msa1218170 | 0.817549 | 3.113440e-52 | -8.615850e-47 |
| Msa0582320 | Msa1218170 | 0.807535 | 4.821064e-50 | -8.615850e-47 |
| Msa0584030 | Msa1218170 | 0.822105 | 2.829415e-53 | -8.615850e-47 |
| Msa0591050 | Msa1218170 | 0.806753 | 7.059198e-50 | -8.615850e-47 |
| Msa0596370 | Msa1218170 | 0.838640 | 2.550903e-57 | -8.615850e-47 |
| Msa0858010 | Msa1218170 | 0.842230 | 2.935110e-58 | -8.615850e-47 |
| Msa0860860 | Msa1218170 | 0.840126 | 1.049156e-57 | -8.615850e-47 |
| Msa0861320 | Msa1218170 | 0.895265 | 1.129580e-75 | -8.615850e-47 |
| Msa0876170 | Msa1218170 | 0.806336 | 8.644099e-50 | -8.615850e-47 |
| Msa0915540 | Msa1218170 | 0.861846 | 7.696905e-64 | -8.615850e-47 |
| Msa0929790 | Msa1218170 | 0.856883 | 2.380385e-62 | -8.615850e-47 |
| Msa0945480 | Msa1218170 | 0.811546 | 6.632054e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218170 | MtrunA17_Chr4g0067861 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 1.98e-89 | 255 |
| Msa1218170 | MtrunA17_Chr1g0187471 | 93.985 | 133 | 8 | 0 | 1 | 133 | 1 | 133 | 2.43e-87 | 250 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218170 | AT2G20450.1 | 82.707 | 133 | 23 | 0 | 1 | 133 | 1 | 133 | 8.37e-76 | 221 |
| Msa1218170 | AT4G27090.1 | 83.077 | 130 | 22 | 0 | 1 | 130 | 1 | 130 | 7.76e-75 | 219 |
Find 52 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGTGAATGAGCGAAATT+AGG | 0.188684 | 8_1:-80728832 | None:intergenic |
| GAGAGCCTCTTGAAATTTAT+AGG | 0.257790 | 8_1:-80731072 | None:intergenic |
| TCTCTATTGTTACTACTAAT+CGG | 0.302417 | 8_1:+80731792 | Msa1218170:three_prime_UTR |
| GTTTACACGGGTGCAACTTT+AGG | 0.307065 | 8_1:+80731815 | Msa1218170:three_prime_UTR |
| ATAGGGGACCTCTCCATATC+TGG | 0.311714 | 8_1:-80731054 | None:intergenic |
| CTCTCAAAATAAATATTTCT+AGG | 0.313038 | 8_1:-80731601 | None:intergenic |
| TAAAATTACATACTCTAGTT+TGG | 0.313540 | 8_1:-80729090 | None:intergenic |
| AGAGCCTCTTGAAATTTATA+GGG | 0.323900 | 8_1:-80731071 | None:intergenic |
| TAAGAGAGTTCCGAAGAAAA+AGG | 0.359607 | 8_1:+80731119 | Msa1218170:CDS |
| TTCAAGAGATTCGTTGAGAT+TGG | 0.364154 | 8_1:+80729001 | Msa1218170:CDS |
| TCTTGGGTTTCTGAGATTCA+AGG | 0.371664 | 8_1:-80728870 | None:intergenic |
| AGAGTGAATGAGCGAAATTA+GGG | 0.372015 | 8_1:-80728831 | None:intergenic |
| CTCTATTGTTACTACTAATC+GGG | 0.386937 | 8_1:+80731793 | Msa1218170:three_prime_UTR |
| GCAAATCATAAGCAAGCAAA+AGG | 0.405033 | 8_1:-80731675 | None:intergenic |
| CTCCAAGTTGCATATCGGTT+TGG | 0.420012 | 8_1:+80731646 | Msa1218170:three_prime_UTR |
| TGCAGAGGGCAGGCGTTGTT+AGG | 0.425389 | 8_1:+80731446 | Msa1218170:intron |
| TCTTATTGATGCTCCAGATA+TGG | 0.437391 | 8_1:+80731041 | Msa1218170:CDS |
| ATGTATCAAAAGAAATTCAT+AGG | 0.438699 | 8_1:-80731535 | None:intergenic |
| CGCCAAACCGATATGCAACT+TGG | 0.444323 | 8_1:-80731648 | None:intergenic |
| ATCAACTACGGAGAAAACTA+TGG | 0.450153 | 8_1:+80729037 | Msa1218170:CDS |
| GATCATGTTGGCAAAGATCA+AGG | 0.463745 | 8_1:+80731340 | Msa1218170:CDS |
| TACTACTAATCGGGTTTACA+CGG | 0.468192 | 8_1:+80731802 | Msa1218170:three_prime_UTR |
| GCTGAGGAAGACTGCAGCTT+AGG | 0.478340 | 8_1:+80731483 | Msa1218170:CDS |
| AGTTTCTCCAAGTTGCATAT+CGG | 0.489678 | 8_1:+80731641 | Msa1218170:three_prime_UTR |
| GAACCTATCAAAATCATTGA+GGG | 0.493162 | 8_1:-80731315 | None:intergenic |
| AACTGATTGTGAAGAAGAGA+AGG | 0.499378 | 8_1:+80731288 | Msa1218170:CDS |
| GTACCAACCAGCAGCTTCCA+TGG | 0.503198 | 8_1:-80731154 | None:intergenic |
| AGAGATTCGTTGAGATTGGA+AGG | 0.504435 | 8_1:+80729005 | Msa1218170:CDS |
| CTGCAGCTTGAGATTTCTAT+CGG | 0.533894 | 8_1:-80731726 | None:intergenic |
| TGAACCTATCAAAATCATTG+AGG | 0.534372 | 8_1:-80731316 | None:intergenic |
| ATCAAAGCCATGGAAGCTGC+TGG | 0.540613 | 8_1:+80731147 | Msa1218170:CDS |
| AAAGGATCTCATCAAAGCCA+TGG | 0.551595 | 8_1:+80731137 | Msa1218170:CDS |
| CTGCAGATGATGTTAACTCC+TGG | 0.554551 | 8_1:+80731743 | Msa1218170:three_prime_UTR |
| AAACAGATGTTAAGAACAAG+TGG | 0.554885 | 8_1:+80731243 | Msa1218170:intron |
| ATCTCAACGAATCTCTTGAA+AGG | 0.558154 | 8_1:-80728998 | None:intergenic |
| CAAATCATAAGCAAGCAAAA+GGG | 0.558517 | 8_1:-80731674 | None:intergenic |
| ACAAGTGGGAGAAGAGCTCA+TGG | 0.569835 | 8_1:+80731258 | Msa1218170:CDS |
| TGATAGGTTCAAGATCATGT+TGG | 0.577188 | 8_1:+80731328 | Msa1218170:CDS |
| GGCAAGAGCTTGCTAAGCTG+AGG | 0.578125 | 8_1:+80731467 | Msa1218170:CDS |
| ACTACTAATCGGGTTTACAC+GGG | 0.596505 | 8_1:+80731803 | Msa1218170:three_prime_UTR |
| TTACGGCTTATGCAGAGGGC+AGG | 0.597350 | 8_1:+80731436 | Msa1218170:intron |
| AAGTGGGAGAAGAGCTCATG+GGG | 0.603802 | 8_1:+80731260 | Msa1218170:CDS |
| AGGGTTGCTCTGATCAACTA+CGG | 0.605760 | 8_1:+80729025 | Msa1218170:CDS |
| GAGATTCGTTGAGATTGGAA+GGG | 0.623944 | 8_1:+80729006 | Msa1218170:CDS |
| AAATGACATTAAAGAAAACC+AGG | 0.625697 | 8_1:-80731761 | None:intergenic |
| GAGCCTCTTGAAATTTATAG+GGG | 0.637102 | 8_1:-80731070 | None:intergenic |
| AACAGATGTTAAGAACAAGT+GGG | 0.646009 | 8_1:+80731244 | Msa1218170:intron |
| CAAGTGGGAGAAGAGCTCAT+GGG | 0.654042 | 8_1:+80731259 | Msa1218170:CDS |
| ACTGATTGTGAAGAAGAGAA+GGG | 0.654800 | 8_1:+80731289 | Msa1218170:CDS |
| GGTCCCCTATAAATTTCAAG+AGG | 0.658008 | 8_1:+80731067 | Msa1218170:CDS |
| GATTCAAGGTTGAAGCAGAG+AGG | 0.669044 | 8_1:-80728856 | None:intergenic |
| TTGATGCTCCAGATATGGAG+AGG | 0.669858 | 8_1:+80731046 | Msa1218170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAACAAAAGAAA+TGG | - | chr8_1:80729121-80729140 | None:intergenic | 10.0% |
| !! | ATCTTTATAATAAAAAAACA+CGG | - | chr8_1:80729636-80729655 | None:intergenic | 10.0% |
| !!! | AGTTTTTTAATGTTAAATTT+AGG | + | chr8_1:80730275-80730294 | Msa1218170:intron | 10.0% |
| !!! | AAAGTTTGAATTTTTTTATC+TGG | + | chr8_1:80729212-80729231 | Msa1218170:intron | 15.0% |
| !!! | TATTTCTATGACAAAAAATA+AGG | - | chr8_1:80729540-80729559 | None:intergenic | 15.0% |
| !! | ATTAAGTCATTTATTCAAAT+TGG | + | chr8_1:80729610-80729629 | Msa1218170:intron | 15.0% |
| !!! | AAAAAATGAATTTTTTCATC+TGG | + | chr8_1:80729704-80729723 | Msa1218170:intron | 15.0% |
| !!! | AAAAATGAATTTTTTCATCT+GGG | + | chr8_1:80729705-80729724 | Msa1218170:intron | 15.0% |
| !!! | ATTGATATCTTGTTATATTA+AGG | + | chr8_1:80730395-80730414 | Msa1218170:intron | 15.0% |
| !!! | TTAAAACAATCTTATTTCTT+AGG | + | chr8_1:80730530-80730549 | Msa1218170:intron | 15.0% |
| !! | TGTTTACTAACTAATTTAAA+GGG | - | chr8_1:80730844-80730863 | None:intergenic | 15.0% |
| !! | TTGTTTACTAACTAATTTAA+AGG | - | chr8_1:80730845-80730864 | None:intergenic | 15.0% |
| !! | TAAAATTACATACTCTAGTT+TGG | - | chr8_1:80729093-80729112 | None:intergenic | 20.0% |
| !! | AGAAACAAAACCTAAAAATT+GGG | - | chr8_1:80729175-80729194 | None:intergenic | 20.0% |
| !! | AAGAAACAAAACCTAAAAAT+TGG | - | chr8_1:80729176-80729195 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGTTCTATTTCA+AGG | + | chr8_1:80729325-80729344 | Msa1218170:intron | 20.0% |
| !! | TAAATAGAACAAATCAAAAC+TGG | - | chr8_1:80729819-80729838 | None:intergenic | 20.0% |
| !!! | GTATAAACTATTTCTATAAC+AGG | - | chr8_1:80730043-80730062 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCATAT+AGG | + | chr8_1:80730105-80730124 | Msa1218170:intron | 20.0% |
| !! | ATATTTGTAATCAAAATGCA+GGG | - | chr8_1:80730131-80730150 | None:intergenic | 20.0% |
| !! | AATATTTGTAATCAAAATGC+AGG | - | chr8_1:80730132-80730151 | None:intergenic | 20.0% |
| !! | AATCTTTCTAATGAAAATAC+AGG | - | chr8_1:80730629-80730648 | None:intergenic | 20.0% |
| !! | TTGCAAATATATGAATGTAA+TGG | + | chr8_1:80730796-80730815 | Msa1218170:intron | 20.0% |
| !! | CAGAAACAAAAAAAAAGATT+AGG | - | chr8_1:80731384-80731403 | None:intergenic | 20.0% |
| !! | TTTCTGATGCTTTATAATTA+CGG | + | chr8_1:80731419-80731438 | Msa1218170:intron | 20.0% |
| !! | ATGTATCAAAAGAAATTCAT+AGG | - | chr8_1:80731538-80731557 | None:intergenic | 20.0% |
| !! | CTCTCAAAATAAATATTTCT+AGG | - | chr8_1:80731604-80731623 | None:intergenic | 20.0% |
| ! | AGCAAATGAATGTTAATTGA+AGG | - | chr8_1:80728965-80728984 | None:intergenic | 25.0% |
| ! | GCATTGTCAGAAAAAATTTA+TGG | + | chr8_1:80729261-80729280 | Msa1218170:intron | 25.0% |
| ! | TTTATGGTAGAATTTGATTG+AGG | + | chr8_1:80729277-80729296 | Msa1218170:intron | 25.0% |
| ! | ACTTAACTTAATGCAAAGAA+TGG | - | chr8_1:80729361-80729380 | None:intergenic | 25.0% |
| !!! | AGTTAAGTTTTGAACTGATT+TGG | + | chr8_1:80729373-80729392 | Msa1218170:intron | 25.0% |
| !!! | TGTTTTAGGTAGTGATATTA+AGG | + | chr8_1:80729396-80729415 | Msa1218170:intron | 25.0% |
| !!! | CAGTTTTTTTTTTTCTGGTA+AGG | - | chr8_1:80729756-80729775 | None:intergenic | 25.0% |
| ! | TACCAGAAAAAAAAAAACTG+TGG | + | chr8_1:80729756-80729775 | Msa1218170:intron | 25.0% |
| !!! | TACCACAGTTTTTTTTTTTC+TGG | - | chr8_1:80729761-80729780 | None:intergenic | 25.0% |
| !! | TGTTCATGTTTTGCATTTAT+TGG | + | chr8_1:80729848-80729867 | Msa1218170:intron | 25.0% |
| !!! | ATTGGTGTTTTGAACTAATT+TGG | + | chr8_1:80729866-80729885 | Msa1218170:intron | 25.0% |
| !! | TTGAACTAATTTGGTAATCT+AGG | + | chr8_1:80729875-80729894 | Msa1218170:intron | 25.0% |
| !!! | TAATCTAGGTATTGATGTAT+TGG | + | chr8_1:80729889-80729908 | Msa1218170:intron | 25.0% |
| !!! | AATCTAGGTATTGATGTATT+GGG | + | chr8_1:80729890-80729909 | Msa1218170:intron | 25.0% |
| !!! | TTTTGATTTGTTCTACTTCA+AGG | + | chr8_1:80730315-80730334 | Msa1218170:intron | 25.0% |
| !!! | TTGAGCAAATTTGTTAATCT+CGG | + | chr8_1:80730371-80730390 | Msa1218170:intron | 25.0% |
| ! | TATTTCTTAGGTTATACCTA+AGG | + | chr8_1:80730542-80730561 | Msa1218170:intron | 25.0% |
| ! | TTTAGGAACAACAAAAATGT+GGG | - | chr8_1:80730756-80730775 | None:intergenic | 25.0% |
| ! | ATTTAGGAACAACAAAAATG+TGG | - | chr8_1:80730757-80730776 | None:intergenic | 25.0% |
| ! | AATGAACTTGACACTAATTT+AGG | - | chr8_1:80730773-80730792 | None:intergenic | 25.0% |
| ! | TTTAAAGGGAATAAGAAACA+TGG | - | chr8_1:80730830-80730849 | None:intergenic | 25.0% |
| ! | AGTAATAAATAGTGCAGTAT+TGG | - | chr8_1:80730947-80730966 | None:intergenic | 25.0% |
| ! | ATCAAGAAATATTTGCTTGT+GGG | - | chr8_1:80730986-80731005 | None:intergenic | 25.0% |
| !! | GAATTTCTTTTGATACATCT+TGG | + | chr8_1:80731540-80731559 | Msa1218170:three_prime_UTR | 25.0% |
| ! | AAATGACATTAAAGAAAACC+AGG | - | chr8_1:80731764-80731783 | None:intergenic | 25.0% |
| ! | TCTCTATTGTTACTACTAAT+CGG | + | chr8_1:80731792-80731811 | Msa1218170:three_prime_UTR | 25.0% |
| ATATGATGAGAAATTGTGCT+CGG | - | chr8_1:80728918-80728937 | None:intergenic | 30.0% | |
| GTTAATTGAAGGAGAAAACT+TGG | - | chr8_1:80728954-80728973 | None:intergenic | 30.0% | |
| !!! | TTTAGTTTTTGTATAGCTGC+TGG | + | chr8_1:80729302-80729321 | Msa1218170:intron | 30.0% |
| !!! | TTGAACTGATTTGGTGTTTT+AGG | + | chr8_1:80729382-80729401 | Msa1218170:intron | 30.0% |
| AAATACTAAGCGTTTATGCA+AGG | - | chr8_1:80729430-80729449 | None:intergenic | 30.0% | |
| !!! | GGTGTTGATAAATGTTTTCA+TGG | + | chr8_1:80729726-80729745 | Msa1218170:intron | 30.0% |
| !! | GCTGTTTTCATAAGTTATCT+TGG | - | chr8_1:80729981-80730000 | None:intergenic | 30.0% |
| TTGTCTGCATCATTTATGTT+TGG | + | chr8_1:80730155-80730174 | Msa1218170:intron | 30.0% | |
| ! | AACTACCAGATTCTTTTTCT+GGG | - | chr8_1:80730259-80730278 | None:intergenic | 30.0% |
| ! | AAACTACCAGATTCTTTTTC+TGG | - | chr8_1:80730260-80730279 | None:intergenic | 30.0% |
| !! | TTTAGGTTTTCTATAGCTTC+TGG | + | chr8_1:80730292-80730311 | Msa1218170:intron | 30.0% |
| ! | TGTCTGTGTTTTGCATTAAA+TGG | + | chr8_1:80730344-80730363 | Msa1218170:intron | 30.0% |
| ATCTCCTAGCATAAATACTT+GGG | + | chr8_1:80730422-80730441 | Msa1218170:intron | 30.0% | |
| TTGAAACTGCATAGCATAAT+TGG | + | chr8_1:80730699-80730718 | Msa1218170:intron | 30.0% | |
| TTCATTTGAGCACTATTCAT+GGG | - | chr8_1:80730894-80730913 | None:intergenic | 30.0% | |
| ATTCATTTGAGCACTATTCA+TGG | - | chr8_1:80730895-80730914 | None:intergenic | 30.0% | |
| TCAAGAAATATTTGCTTGTG+GGG | - | chr8_1:80730985-80731004 | None:intergenic | 30.0% | |
| GATCAAGAAATATTTGCTTG+TGG | - | chr8_1:80730987-80731006 | None:intergenic | 30.0% | |
| TTTGTGTACTATATGTTGAC+AGG | + | chr8_1:80731017-80731036 | Msa1218170:intron | 30.0% | |
| AGAGCCTCTTGAAATTTATA+GGG | - | chr8_1:80731074-80731093 | None:intergenic | 30.0% | |
| ! | TTGATGAGATCCTTTTTCTT+CGG | - | chr8_1:80731132-80731151 | None:intergenic | 30.0% |
| ! | ATGCAGTTTTTCACAAAAGT+TGG | - | chr8_1:80731179-80731198 | None:intergenic | 30.0% |
| AAACAGATGTTAAGAACAAG+TGG | + | chr8_1:80731243-80731262 | Msa1218170:intron | 30.0% | |
| AACAGATGTTAAGAACAAGT+GGG | + | chr8_1:80731244-80731263 | Msa1218170:intron | 30.0% | |
| GAACCTATCAAAATCATTGA+GGG | - | chr8_1:80731318-80731337 | None:intergenic | 30.0% | |
| TGAACCTATCAAAATCATTG+AGG | - | chr8_1:80731319-80731338 | None:intergenic | 30.0% | |
| CAAATCATAAGCAAGCAAAA+GGG | - | chr8_1:80731677-80731696 | None:intergenic | 30.0% | |
| !! | TTGCTTTTCAAGATGTTCTT+TGG | + | chr8_1:80731703-80731722 | Msa1218170:three_prime_UTR | 30.0% |
| CTCTATTGTTACTACTAATC+GGG | + | chr8_1:80731793-80731812 | Msa1218170:three_prime_UTR | 30.0% | |
| AGAGTGAATGAGCGAAATTA+GGG | - | chr8_1:80728834-80728853 | None:intergenic | 35.0% | |
| AACCCAAGAGAGAGAAAAAA+TGG | + | chr8_1:80728884-80728903 | Msa1218170:exon | 35.0% | |
| ATCTCAACGAATCTCTTGAA+AGG | - | chr8_1:80729001-80729020 | None:intergenic | 35.0% | |
| TTCAAGAGATTCGTTGAGAT+TGG | + | chr8_1:80729001-80729020 | Msa1218170:CDS | 35.0% | |
| ATCAACTACGGAGAAAACTA+TGG | + | chr8_1:80729037-80729056 | Msa1218170:CDS | 35.0% | |
| CCTAAAAATTGGGTACAAGA+TGG | - | chr8_1:80729165-80729184 | None:intergenic | 35.0% | |
| ! | CCATCTTGTACCCAATTTTT+AGG | + | chr8_1:80729162-80729181 | Msa1218170:intron | 35.0% |
| GCTGTCATCACAAGTTATAT+TGG | - | chr8_1:80729486-80729505 | None:intergenic | 35.0% | |
| !! | TTGAGTTGTCTGCATCTTTT+AGG | + | chr8_1:80729655-80729674 | Msa1218170:intron | 35.0% |
| !!! | TTGTCTGCATCTTTTAGGTT+TGG | + | chr8_1:80729660-80729679 | Msa1218170:intron | 35.0% |
| !!! | AGTTTTTTGTTCGCGACTTT+AGG | + | chr8_1:80729780-80729799 | Msa1218170:intron | 35.0% |
| TGTATTGGGATATTATTCCC+CGG | + | chr8_1:80729904-80729923 | Msa1218170:intron | 35.0% | |
| TGAATACCAAGTGTTTATGC+CGG | - | chr8_1:80729926-80729945 | None:intergenic | 35.0% | |
| TATTGCCCAGAAAAAGAATC+TGG | + | chr8_1:80730251-80730270 | Msa1218170:intron | 35.0% | |
| AGTATTTATGCTAGGAGATG+AGG | - | chr8_1:80730421-80730440 | None:intergenic | 35.0% | |
| CATCTCCTAGCATAAATACT+TGG | + | chr8_1:80730421-80730440 | Msa1218170:intron | 35.0% | |
| GATTCCCAAGTATTTATGCT+AGG | - | chr8_1:80730429-80730448 | None:intergenic | 35.0% | |
| CATAAGCTCTTGTCAAGATA+GGG | - | chr8_1:80730568-80730587 | None:intergenic | 35.0% | |
| ATGAAAATACAGGCTGTAGT+TGG | - | chr8_1:80730619-80730638 | None:intergenic | 35.0% | |
| TGCATAGCATAATTGGTGTA+GGG | + | chr8_1:80730706-80730725 | Msa1218170:intron | 35.0% | |
| TAGTGCTCAAATGAATGTTG+TGG | + | chr8_1:80730899-80730918 | Msa1218170:intron | 35.0% | |
| CAAGAAATATTTGCTTGTGG+GGG | - | chr8_1:80730984-80731003 | None:intergenic | 35.0% | |
| TCTTATTGATGCTCCAGATA+TGG | + | chr8_1:80731041-80731060 | Msa1218170:CDS | 35.0% | |
| GAGCCTCTTGAAATTTATAG+GGG | - | chr8_1:80731073-80731092 | None:intergenic | 35.0% | |
| GAGAGCCTCTTGAAATTTAT+AGG | - | chr8_1:80731075-80731094 | None:intergenic | 35.0% | |
| TAAGAGAGTTCCGAAGAAAA+AGG | + | chr8_1:80731119-80731138 | Msa1218170:CDS | 35.0% | |
| AACTGATTGTGAAGAAGAGA+AGG | + | chr8_1:80731288-80731307 | Msa1218170:CDS | 35.0% | |
| ACTGATTGTGAAGAAGAGAA+GGG | + | chr8_1:80731289-80731308 | Msa1218170:CDS | 35.0% | |
| TGATAGGTTCAAGATCATGT+TGG | + | chr8_1:80731328-80731347 | Msa1218170:CDS | 35.0% | |
| TATAATTACGGCTTATGCAG+AGG | + | chr8_1:80731431-80731450 | Msa1218170:intron | 35.0% | |
| ATAATTACGGCTTATGCAGA+GGG | + | chr8_1:80731432-80731451 | Msa1218170:intron | 35.0% | |
| AGTTTCTCCAAGTTGCATAT+CGG | + | chr8_1:80731641-80731660 | Msa1218170:three_prime_UTR | 35.0% | |
| GCAAATCATAAGCAAGCAAA+AGG | - | chr8_1:80731678-80731697 | None:intergenic | 35.0% | |
| TACTACTAATCGGGTTTACA+CGG | + | chr8_1:80731802-80731821 | Msa1218170:three_prime_UTR | 35.0% | |
| GAGAGTGAATGAGCGAAATT+AGG | - | chr8_1:80728835-80728854 | None:intergenic | 40.0% | |
| !! | TCTTGGGTTTCTGAGATTCA+AGG | - | chr8_1:80728873-80728892 | None:intergenic | 40.0% |
| !!! | CGCCATTTTTTCTCTCTCTT+GGG | - | chr8_1:80728889-80728908 | None:intergenic | 40.0% |
| !!! | TCGCCATTTTTTCTCTCTCT+TGG | - | chr8_1:80728890-80728909 | None:intergenic | 40.0% |
| AGAGATTCGTTGAGATTGGA+AGG | + | chr8_1:80729005-80729024 | Msa1218170:CDS | 40.0% | |
| GAGATTCGTTGAGATTGGAA+GGG | + | chr8_1:80729006-80729025 | Msa1218170:CDS | 40.0% | |
| AGCGTTTATGCAAGGAGATA+AGG | - | chr8_1:80729422-80729441 | None:intergenic | 40.0% | |
| AATACCAAGTGTTTATGCCG+GGG | - | chr8_1:80729924-80729943 | None:intergenic | 40.0% | |
| GAATACCAAGTGTTTATGCC+GGG | - | chr8_1:80729925-80729944 | None:intergenic | 40.0% | |
| ATCAAAATGCAGGGCCTATA+TGG | - | chr8_1:80730122-80730141 | None:intergenic | 40.0% | |
| GCATAAGCTCTTGTCAAGAT+AGG | - | chr8_1:80730569-80730588 | None:intergenic | 40.0% | |
| !! | TGTCTGCAGTGTTGATTAGT+TGG | + | chr8_1:80730653-80730672 | Msa1218170:intron | 40.0% |
| CTGCATAGCATAATTGGTGT+AGG | + | chr8_1:80730705-80730724 | Msa1218170:intron | 40.0% | |
| TAGCATAATTGGTGTAGGGA+CGG | + | chr8_1:80730710-80730729 | Msa1218170:intron | 40.0% | |
| ATAGTACACAAACTCAGCGA+TGG | - | chr8_1:80731009-80731028 | None:intergenic | 40.0% | |
| GGTCCCCTATAAATTTCAAG+AGG | + | chr8_1:80731067-80731086 | Msa1218170:CDS | 40.0% | |
| AAAGGATCTCATCAAAGCCA+TGG | + | chr8_1:80731137-80731156 | Msa1218170:CDS | 40.0% | |
| !! | CAGCCCTCAATGATTTTGAT+AGG | + | chr8_1:80731312-80731331 | Msa1218170:CDS | 40.0% |
| GATCATGTTGGCAAAGATCA+AGG | + | chr8_1:80731340-80731359 | Msa1218170:CDS | 40.0% | |
| CTGCAGCTTGAGATTTCTAT+CGG | - | chr8_1:80731729-80731748 | None:intergenic | 40.0% | |
| ACTACTAATCGGGTTTACAC+GGG | + | chr8_1:80731803-80731822 | Msa1218170:three_prime_UTR | 40.0% | |
| GATTCAAGGTTGAAGCAGAG+AGG | - | chr8_1:80728859-80728878 | None:intergenic | 45.0% | |
| AGGGTTGCTCTGATCAACTA+CGG | + | chr8_1:80729025-80729044 | Msa1218170:CDS | 45.0% | |
| TATTCCCCGGCATAAACACT+TGG | + | chr8_1:80729917-80729936 | Msa1218170:intron | 45.0% | |
| TCTTGTCAAGATAGGGCCTT+AGG | - | chr8_1:80730561-80730580 | None:intergenic | 45.0% | |
| GTTGTGGTTTCATTGCATCC+AGG | + | chr8_1:80730915-80730934 | Msa1218170:intron | 45.0% | |
| TTGATGCTCCAGATATGGAG+AGG | + | chr8_1:80731046-80731065 | Msa1218170:CDS | 45.0% | |
| ! | CTCCAAGTTGCATATCGGTT+TGG | + | chr8_1:80731646-80731665 | Msa1218170:three_prime_UTR | 45.0% |
| CTGCAGATGATGTTAACTCC+TGG | + | chr8_1:80731743-80731762 | Msa1218170:three_prime_UTR | 45.0% | |
| GTTTACACGGGTGCAACTTT+AGG | + | chr8_1:80731815-80731834 | Msa1218170:three_prime_UTR | 45.0% | |
| !! | GTGTAGGGACGGAAGCATTT+CGG | + | chr8_1:80730721-80730740 | Msa1218170:intron | 50.0% |
| !! | TGTAGGGACGGAAGCATTTC+GGG | + | chr8_1:80730722-80730741 | Msa1218170:intron | 50.0% |
| !! | GTGCAGTATTGGCTCAAACC+TGG | - | chr8_1:80730936-80730955 | None:intergenic | 50.0% |
| ATAGGGGACCTCTCCATATC+TGG | - | chr8_1:80731057-80731076 | None:intergenic | 50.0% | |
| ATCAAAGCCATGGAAGCTGC+TGG | + | chr8_1:80731147-80731166 | Msa1218170:CDS | 50.0% | |
| ACAAGTGGGAGAAGAGCTCA+TGG | + | chr8_1:80731258-80731277 | Msa1218170:CDS | 50.0% | |
| CAAGTGGGAGAAGAGCTCAT+GGG | + | chr8_1:80731259-80731278 | Msa1218170:CDS | 50.0% | |
| AAGTGGGAGAAGAGCTCATG+GGG | + | chr8_1:80731260-80731279 | Msa1218170:CDS | 50.0% | |
| CGCCAAACCGATATGCAACT+TGG | - | chr8_1:80731651-80731670 | None:intergenic | 50.0% | |
| !! | GTAGGGACGGAAGCATTTCG+GGG | + | chr8_1:80730723-80730742 | Msa1218170:intron | 55.0% |
| !! | TAGGGACGGAAGCATTTCGG+GGG | + | chr8_1:80730724-80730743 | Msa1218170:intron | 55.0% |
| AAGCCATGGAAGCTGCTGGT+TGG | + | chr8_1:80731151-80731170 | Msa1218170:intron | 55.0% | |
| GTACCAACCAGCAGCTTCCA+TGG | - | chr8_1:80731157-80731176 | None:intergenic | 55.0% | |
| TTACGGCTTATGCAGAGGGC+AGG | + | chr8_1:80731436-80731455 | Msa1218170:intron | 55.0% | |
| !! | GGCAAGAGCTTGCTAAGCTG+AGG | + | chr8_1:80731467-80731486 | Msa1218170:CDS | 55.0% |
| GCTGAGGAAGACTGCAGCTT+AGG | + | chr8_1:80731483-80731502 | Msa1218170:CDS | 55.0% | |
| ! | TGCAGAGGGCAGGCGTTGTT+AGG | + | chr8_1:80731446-80731465 | Msa1218170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 80728826 | 80731882 | 80728826 | ID=Msa1218170;Name=Msa1218170 |
| chr8_1 | mRNA | 80728826 | 80731882 | 80728826 | ID=Msa1218170-mRNA-1;Parent=Msa1218170;Name=Msa1218170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=77|1|1|1|1|1|5|378|133 |
| chr8_1 | exon | 80728826 | 80728905 | 80728826 | ID=Msa1218170-mRNA-1:exon:28364;Parent=Msa1218170-mRNA-1 |
| chr8_1 | exon | 80728998 | 80729099 | 80728998 | ID=Msa1218170-mRNA-1:exon:28365;Parent=Msa1218170-mRNA-1 |
| chr8_1 | exon | 80731039 | 80731168 | 80731039 | ID=Msa1218170-mRNA-1:exon:28366;Parent=Msa1218170-mRNA-1 |
| chr8_1 | exon | 80731249 | 80731361 | 80731249 | ID=Msa1218170-mRNA-1:exon:28367;Parent=Msa1218170-mRNA-1 |
| chr8_1 | exon | 80731451 | 80731882 | 80731451 | ID=Msa1218170-mRNA-1:exon:28368;Parent=Msa1218170-mRNA-1 |
| chr8_1 | five_prime_UTR | 80728826 | 80728902 | 80728826 | ID=Msa1218170-mRNA-1:five_prime_utr;Parent=Msa1218170-mRNA-1 |
| chr8_1 | CDS | 80728903 | 80728905 | 80728903 | ID=Msa1218170-mRNA-1:cds;Parent=Msa1218170-mRNA-1 |
| chr8_1 | CDS | 80728998 | 80729099 | 80728998 | ID=Msa1218170-mRNA-1:cds;Parent=Msa1218170-mRNA-1 |
| chr8_1 | CDS | 80731039 | 80731168 | 80731039 | ID=Msa1218170-mRNA-1:cds;Parent=Msa1218170-mRNA-1 |
| chr8_1 | CDS | 80731249 | 80731361 | 80731249 | ID=Msa1218170-mRNA-1:cds;Parent=Msa1218170-mRNA-1 |
| chr8_1 | CDS | 80731451 | 80731504 | 80731451 | ID=Msa1218170-mRNA-1:cds;Parent=Msa1218170-mRNA-1 |
| chr8_1 | three_prime_UTR | 80731505 | 80731882 | 80731505 | ID=Msa1218170-mRNA-1:three_prime_utr;Parent=Msa1218170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
