Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888980 | XP_003618972.1 | 99.757 | 411 | 1 | 0 | 1 | 411 | 1 | 411 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888980 | sp|Q9S7A0|DHE3_ARATH | 88.998 | 409 | 45 | 0 | 1 | 409 | 1 | 409 | 0.0 | 778 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888980 | G7KPN3 | 99.757 | 411 | 1 | 0 | 1 | 411 | 1 | 411 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0695650 | Msa0888980 | 0.804172 | 2.453960e-49 | -8.615850e-47 |
| Msa0716150 | Msa0888980 | 0.825075 | 5.711358e-54 | -8.615850e-47 |
| Msa0837320 | Msa0888980 | 0.803294 | 3.733705e-49 | -8.615850e-47 |
| Msa0127400 | Msa0888980 | 0.817327 | 3.492043e-52 | -8.615850e-47 |
| Msa0143630 | Msa0888980 | 0.816263 | 6.052727e-52 | -8.615850e-47 |
| Msa0474570 | Msa0888980 | 0.808770 | 2.630720e-50 | -8.615850e-47 |
| Msa0351050 | Msa0888980 | 0.808353 | 3.229504e-50 | -8.615850e-47 |
| Msa0519150 | Msa0888980 | 0.803657 | 3.139676e-49 | -8.615850e-47 |
| Msa0888980 | Msa0944620 | 0.912611 | 1.596935e-83 | -8.615850e-47 |
| Msa0888980 | Msa0980910 | 0.916790 | 1.165831e-85 | -8.615850e-47 |
| Msa0888980 | Msa1077060 | 0.811761 | 5.956908e-51 | -8.615850e-47 |
| Msa0888980 | Msa1078890 | 0.801250 | 9.838774e-49 | -8.615850e-47 |
| Msa0888980 | Msa1122790 | 0.816147 | 6.424175e-52 | -8.615850e-47 |
| Msa0888980 | Msa1265020 | 0.807138 | 5.850462e-50 | -8.615850e-47 |
| Msa0888980 | Msa1350700 | 0.805303 | 1.424833e-49 | -8.615850e-47 |
| Msa0888980 | Msa1360260 | 0.803952 | 2.727204e-49 | -8.615850e-47 |
| Msa0888980 | Msa1374450 | 0.819271 | 1.267864e-52 | -8.615850e-47 |
| Msa0888980 | Msa1407350 | 0.835515 | 1.604285e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888980 | MtrunA17_Chr6g0461461 | 99.757 | 411 | 1 | 0 | 1 | 411 | 1 | 411 | 0.0 | 845 |
| Msa0888980 | MtrunA17_Chr7g0253311 | 90.754 | 411 | 38 | 0 | 1 | 411 | 1 | 411 | 0.0 | 790 |
| Msa0888980 | MtrunA17_Chr5g0399821 | 79.562 | 411 | 84 | 0 | 1 | 411 | 1 | 411 | 0.0 | 704 |
| Msa0888980 | MtrunA17_Chr4g0055521 | 79.562 | 411 | 84 | 0 | 1 | 411 | 1 | 411 | 0.0 | 696 |
| Msa0888980 | MtrunA17_Chr8g0341541 | 27.346 | 373 | 258 | 4 | 16 | 375 | 224 | 596 | 2.26e-36 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888980 | AT3G03910.1 | 88.998 | 409 | 45 | 0 | 1 | 409 | 1 | 409 | 0.0 | 778 |
| Msa0888980 | AT5G18170.1 | 88.078 | 411 | 49 | 0 | 1 | 411 | 1 | 411 | 0.0 | 774 |
| Msa0888980 | AT5G07440.2 | 79.319 | 411 | 85 | 0 | 1 | 411 | 1 | 411 | 0.0 | 704 |
| Msa0888980 | AT5G07440.1 | 79.319 | 411 | 85 | 0 | 1 | 411 | 1 | 411 | 0.0 | 704 |
| Msa0888980 | AT3G03910.2 | 90.000 | 350 | 35 | 0 | 1 | 350 | 1 | 350 | 0.0 | 664 |
| Msa0888980 | AT5G07440.3 | 78.378 | 296 | 64 | 0 | 1 | 296 | 1 | 296 | 2.09e-178 | 499 |
| Msa0888980 | AT1G51720.1 | 27.989 | 368 | 243 | 5 | 24 | 375 | 235 | 596 | 1.79e-34 | 135 |
| Msa0888980 | AT1G51720.3 | 27.989 | 368 | 243 | 5 | 24 | 375 | 235 | 596 | 1.79e-34 | 135 |
| Msa0888980 | AT1G51720.2 | 28.571 | 322 | 208 | 5 | 24 | 329 | 235 | 550 | 6.64e-33 | 130 |
| Msa0888980 | AT1G51720.4 | 29.577 | 213 | 150 | 0 | 24 | 236 | 235 | 447 | 2.17e-24 | 105 |
Find 113 sgRNAs with CRISPR-Local
Find 474 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATATATATAGCTATTT+TGG | 0.098915 | 6_1:+54530638 | None:intergenic |
| TATCAATATCCCTATAATTT+AGG | 0.133817 | 6_1:+54526746 | None:intergenic |
| CAGAAAATTCATGATCTTAT+TGG | 0.148809 | 6_1:-54529564 | Msa0888980:CDS |
| CATTTACATCCCTAAATTAT+AGG | 0.168314 | 6_1:-54526756 | Msa0888980:three_prime_UTR |
| GGCTGCTTCCACTATAAATT+TGG | 0.168389 | 6_1:+54527691 | None:intergenic |
| AATTGATCCTAAGTCAATTT+TGG | 0.182450 | 6_1:-54528371 | Msa0888980:CDS |
| TGGCTACATATGTTGGATTT+AGG | 0.192870 | 6_1:-54530020 | Msa0888980:CDS |
| GAGGCTTTGCTTAATGAATA+TGG | 0.226245 | 6_1:-54529108 | Msa0888980:CDS |
| AAAGAGAACAGAGGAATTAA+AGG | 0.232542 | 6_1:-54528412 | Msa0888980:CDS |
| TAAGTTGGCCTCTAGGCTTT+TGG | 0.233956 | 6_1:-54530490 | Msa0888980:CDS |
| GATTCCATTCAGAGAAATTA+AGG | 0.243391 | 6_1:-54530436 | Msa0888980:intron |
| TGATGTTCCTGCACCTGATA+TGG | 0.264000 | 6_1:-54529532 | Msa0888980:CDS |
| GCCAAGGTTCCATCATCTTT+AGG | 0.269518 | 6_1:+54530039 | None:intergenic |
| ATCAATATCCCTATAATTTA+GGG | 0.285229 | 6_1:+54526747 | None:intergenic |
| ATTTACATCCCTAAATTATA+GGG | 0.293169 | 6_1:-54526755 | Msa0888980:three_prime_UTR |
| CCAAGGTTCCATCATCTTTA+GGG | 0.301386 | 6_1:+54530040 | None:intergenic |
| TTTCACATCTTTGAAACCTT+TGG | 0.330788 | 6_1:+54526922 | None:intergenic |
| CCAGACATATATGCAAATTC+AGG | 0.335620 | 6_1:-54527521 | Msa0888980:CDS |
| CATAAGTAACTTGTTCTTCA+AGG | 0.337198 | 6_1:-54526594 | Msa0888980:three_prime_UTR |
| TTTAAGCTTCCCAACCTCTA+AGG | 0.338153 | 6_1:+54526819 | None:intergenic |
| TGTGGTCCTGTTCCCATATC+AGG | 0.339231 | 6_1:+54529519 | None:intergenic |
| TATCTGATCCCTCCTTTCAT+AGG | 0.350979 | 6_1:+54529973 | None:intergenic |
| GCTAATGCATTCACTTCATC+TGG | 0.354567 | 6_1:+54529711 | None:intergenic |
| GATGAGTATTCAAAATTTCA+TGG | 0.363676 | 6_1:-54529310 | Msa0888980:CDS |
| AGAGGAATTAAAGGATTTCA+TGG | 0.367534 | 6_1:-54528403 | Msa0888980:CDS |
| AAACTAACCTCATCAGCATC+TGG | 0.382033 | 6_1:+54527653 | None:intergenic |
| GCAGTAGCAAATTTACCATA+TGG | 0.388893 | 6_1:-54529666 | Msa0888980:CDS |
| TGCACAATTAATAAATGAAA+AGG | 0.394871 | 6_1:-54528521 | Msa0888980:CDS |
| TGGTCAACGGTTTGTTATAC+AGG | 0.395946 | 6_1:-54529073 | Msa0888980:intron |
| CTTACCTTAATTTCTCTGAA+TGG | 0.404941 | 6_1:+54530432 | None:intergenic |
| ATCTGGGTCAGTTGGGTGAT+TGG | 0.405284 | 6_1:+54527670 | None:intergenic |
| GTTCTTATCCCTGCTGCTCT+TGG | 0.407385 | 6_1:-54528334 | Msa0888980:CDS |
| GCAAGGGCCACTGTCCTTAG+AGG | 0.408079 | 6_1:-54526833 | Msa0888980:CDS |
| TTTGAATACTTAAGTAGGCT+TGG | 0.409262 | 6_1:+54528433 | None:intergenic |
| GAATATGGAAAGAGTGTATC+TGG | 0.410289 | 6_1:-54529093 | Msa0888980:CDS |
| GGCCAACTTAAAGTTCCTAT+TGG | 0.416568 | 6_1:+54530503 | None:intergenic |
| CCTGAATTTGCATATATGTC+TGG | 0.422712 | 6_1:+54527521 | None:intergenic |
| TCTTCAACCAAAATTGACTT+AGG | 0.437278 | 6_1:+54528364 | None:intergenic |
| TAAGTGTTTCTGAGTTAGAA+AGG | 0.444829 | 6_1:-54529605 | Msa0888980:CDS |
| GTCAACCCCTATACCTCCTT+TGG | 0.447730 | 6_1:+54529638 | None:intergenic |
| GATTAAAGCCAAATTTATAG+TGG | 0.447740 | 6_1:-54527699 | Msa0888980:CDS |
| GGAACTTTAAGTTGGCCTCT+AGG | 0.454303 | 6_1:-54530497 | Msa0888980:CDS |
| TAGGGATGTAAATGCAAGAA+TGG | 0.456390 | 6_1:+54526765 | None:intergenic |
| ATTCATGTGGAATGAAGAAA+AGG | 0.460849 | 6_1:-54526972 | Msa0888980:CDS |
| GGCCACTGTCCTTAGAGGTT+GGG | 0.464668 | 6_1:-54526828 | Msa0888980:CDS |
| TACCAATAGGAACTTTAAGT+TGG | 0.473029 | 6_1:-54530505 | Msa0888980:CDS |
| CTTATCCCTGCTGCTCTTGG+TGG | 0.473338 | 6_1:-54528331 | Msa0888980:CDS |
| CCTGCACCTGATATGGGAAC+AGG | 0.473655 | 6_1:-54529525 | Msa0888980:CDS |
| CATCAGCATCTGGGTCAGTT+GGG | 0.474480 | 6_1:+54527663 | None:intergenic |
| CAGTAGCAAATTTACCATAT+GGG | 0.476254 | 6_1:-54529665 | Msa0888980:CDS |
| CTAGGAAGAGATGCAGCTAC+AGG | 0.476509 | 6_1:-54529153 | Msa0888980:CDS |
| AAGGATCTTGGTGGATCTCT+AGG | 0.477089 | 6_1:-54529171 | Msa0888980:CDS |
| ATGCACTAGCAGCTACCAAT+AGG | 0.482916 | 6_1:-54530518 | Msa0888980:CDS |
| ATGACTCCACCAAGAGCAGC+AGG | 0.484698 | 6_1:+54528325 | None:intergenic |
| GATGTTCCTGCACCTGATAT+GGG | 0.484802 | 6_1:-54529531 | Msa0888980:CDS |
| TCATCAGCATCTGGGTCAGT+TGG | 0.487608 | 6_1:+54527662 | None:intergenic |
| GTAGCTGCTAGTGCATTCAT+TGG | 0.488941 | 6_1:+54530525 | None:intergenic |
| CATTCTCCTGCAGTAGTGAC+AGG | 0.491696 | 6_1:-54529286 | Msa0888980:CDS |
| GTTGCTGTAAGTGACATAAC+AGG | 0.493735 | 6_1:-54528487 | Msa0888980:CDS |
| TCTTGAATATCTCTTACTAA+AGG | 0.494262 | 6_1:-54530577 | Msa0888980:five_prime_UTR |
| ATCTGATCCCTCCTTTCATA+GGG | 0.494505 | 6_1:+54529974 | None:intergenic |
| ACATAATTGTGATCTTCGTA+TGG | 0.501094 | 6_1:-54526885 | Msa0888980:CDS |
| AGAGATGCAGCTACAGGAAG+AGG | 0.503016 | 6_1:-54529147 | Msa0888980:CDS |
| CCCTAAAGATGATGGAACCT+TGG | 0.503260 | 6_1:-54530040 | Msa0888980:CDS |
| GGGGTGCCAAAGGAGGTATA+GGG | 0.507760 | 6_1:-54529644 | Msa0888980:CDS |
| TAGCTACTTTGAGTGGGTCC+AGG | 0.509179 | 6_1:-54527486 | Msa0888980:intron |
| CTCTTGGTGGAGTCATCAAT+AGG | 0.511178 | 6_1:-54528318 | Msa0888980:intron |
| TGTAGCATCCCTAAAGATGA+TGG | 0.518454 | 6_1:-54530048 | Msa0888980:CDS |
| GGGCCACTGTCCTTAGAGGT+TGG | 0.521012 | 6_1:-54526829 | Msa0888980:CDS |
| TGCTAGTGCATTCATTGGTA+AGG | 0.522896 | 6_1:+54530530 | None:intergenic |
| GGAACCTTGGCTACATATGT+TGG | 0.526095 | 6_1:-54530027 | Msa0888980:CDS |
| GCACAATTAATAAATGAAAA+GGG | 0.531317 | 6_1:-54528520 | Msa0888980:CDS |
| GGGTGCCAAAGGAGGTATAG+GGG | 0.533576 | 6_1:-54529643 | Msa0888980:CDS |
| CCTGTTCCCATATCAGGTGC+AGG | 0.535228 | 6_1:+54529525 | None:intergenic |
| CTGTCACTACTGCAGGAGAA+TGG | 0.538185 | 6_1:+54529287 | None:intergenic |
| TCAGAAACACTTAACTCTGA+AGG | 0.541308 | 6_1:+54529615 | None:intergenic |
| ACGGTTAACTGCAAGTGTAA+AGG | 0.546868 | 6_1:+54526859 | None:intergenic |
| TTACAGTTAGCTACTTTGAG+TGG | 0.548473 | 6_1:-54527493 | Msa0888980:CDS |
| AGTAGCAAATTTACCATATG+GGG | 0.548835 | 6_1:-54529664 | Msa0888980:CDS |
| CATTAGCACAACTAATGACA+TGG | 0.551350 | 6_1:-54529695 | Msa0888980:CDS |
| AACTAACCTCATCAGCATCT+GGG | 0.553542 | 6_1:+54527654 | None:intergenic |
| TACAGTTAGCTACTTTGAGT+GGG | 0.554093 | 6_1:-54527492 | Msa0888980:CDS |
| AGTAAGAGATATTCAAGATG+TGG | 0.558831 | 6_1:+54530582 | None:intergenic |
| AACTCTAGAGGCCCTATGAA+AGG | 0.558841 | 6_1:-54529985 | Msa0888980:CDS |
| CAGAAACACTTAACTCTGAA+GGG | 0.568150 | 6_1:+54529616 | None:intergenic |
| TTGCAGTTAACCGTGTAGCA+AGG | 0.571162 | 6_1:-54526850 | Msa0888980:CDS |
| TGCAGTTAACCGTGTAGCAA+GGG | 0.572335 | 6_1:-54526849 | Msa0888980:CDS |
| CATAATTGTGATCTTCGTAT+GGG | 0.580434 | 6_1:-54526884 | Msa0888980:CDS |
| AGGTGTCCTCTTTGCAACTG+AGG | 0.584722 | 6_1:-54529127 | Msa0888980:CDS |
| TTTGAATGCAGACAATGGCA+TGG | 0.592465 | 6_1:-54529339 | Msa0888980:intron |
| AAATCCAACATATGTAGCCA+AGG | 0.594381 | 6_1:+54530023 | None:intergenic |
| CTAGAGGCCCTATGAAAGGA+GGG | 0.600199 | 6_1:-54529981 | Msa0888980:CDS |
| AATTTGCATATATGTCTGGA+AGG | 0.603948 | 6_1:+54527525 | None:intergenic |
| AACTGACCCAGATGCTGATG+AGG | 0.606496 | 6_1:-54527660 | Msa0888980:intron |
| GGAGCTATAAAGAATAGCAA+TGG | 0.615254 | 6_1:-54528466 | Msa0888980:CDS |
| GCAAAGCCTCAGTTGCAAAG+AGG | 0.616452 | 6_1:+54529121 | None:intergenic |
| AGAACATACAAGGATTCATG+TGG | 0.616462 | 6_1:-54526985 | Msa0888980:CDS |
| TTAAAGACATACATGACCAA+AGG | 0.616871 | 6_1:-54526938 | Msa0888980:CDS |
| ATTCAACATGATAACTCTAG+AGG | 0.617647 | 6_1:-54529997 | Msa0888980:CDS |
| TCTAGAGGCCCTATGAAAGG+AGG | 0.618079 | 6_1:-54529982 | Msa0888980:CDS |
| GACATATATGCAAATTCAGG+AGG | 0.618468 | 6_1:-54527518 | Msa0888980:CDS |
| TGATATGGGAACAGGACCAC+AGG | 0.619474 | 6_1:-54529517 | Msa0888980:intron |
| GAAAGAGTGTATCTGGTCAA+CGG | 0.628658 | 6_1:-54529086 | Msa0888980:CDS |
| GGACAGTGGCCCTTGCTACA+CGG | 0.632846 | 6_1:+54526840 | None:intergenic |
| CAATTAATAAATGAAAAGGG+TGG | 0.642073 | 6_1:-54528517 | Msa0888980:CDS |
| GAATATAAATAACCTCAGGA+TGG | 0.644448 | 6_1:+54529950 | None:intergenic |
| GGAATTAAAGGATTTCATGG+TGG | 0.677893 | 6_1:-54528400 | Msa0888980:CDS |
| TTCCCAACCTCTAAGGACAG+TGG | 0.686018 | 6_1:+54526826 | None:intergenic |
| ATCCAATCCCAAAAGCCTAG+AGG | 0.686949 | 6_1:+54530482 | None:intergenic |
| TGACTCCACCAAGAGCAGCA+GGG | 0.699860 | 6_1:+54528326 | None:intergenic |
| GTAGCAAATTTACCATATGG+GGG | 0.712264 | 6_1:-54529663 | Msa0888980:CDS |
| AAGTATTCAAAAGAGAACAG+AGG | 0.716008 | 6_1:-54528421 | Msa0888980:CDS |
| AGGGATCAGATACCATCCTG+AGG | 0.734957 | 6_1:-54529962 | Msa0888980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATATATAGCTATTTT+GGG | + | chr6_1:54526600-54526619 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAATGTAT+TGG | - | chr6_1:54527484-54527503 | Msa0888980:intron | 10.0% |
| !!! | TAATTTAATTTACTTACTAT+TGG | + | chr6_1:54527980-54527999 | None:intergenic | 10.0% |
| !! | TAAAAAATTAGAAATGAAAT+TGG | + | chr6_1:54528036-54528055 | None:intergenic | 10.0% |
| !!! | TAATTTTTTATTTTGAATGA+AGG | - | chr6_1:54528046-54528065 | Msa0888980:intron | 10.0% |
| !! | CAAAAATACTAATTATTAAT+GGG | + | chr6_1:54528634-54528653 | None:intergenic | 10.0% |
| !! | TCAAAAATACTAATTATTAA+TGG | + | chr6_1:54528635-54528654 | None:intergenic | 10.0% |
| !!! | TTTATATATATAGCTATTTT+GGG | + | chr6_1:54526600-54526619 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAATGTAT+TGG | - | chr6_1:54527484-54527503 | Msa0888980:intron | 10.0% |
| !!! | TAATTTAATTTACTTACTAT+TGG | + | chr6_1:54527980-54527999 | None:intergenic | 10.0% |
| !! | TAAAAAATTAGAAATGAAAT+TGG | + | chr6_1:54528036-54528055 | None:intergenic | 10.0% |
| !!! | TAATTTTTTATTTTGAATGA+AGG | - | chr6_1:54528046-54528065 | Msa0888980:intron | 10.0% |
| !! | CAAAAATACTAATTATTAAT+GGG | + | chr6_1:54528634-54528653 | None:intergenic | 10.0% |
| !! | TCAAAAATACTAATTATTAA+TGG | + | chr6_1:54528635-54528654 | None:intergenic | 10.0% |
| !!! | TTATATATATAGCTATTTTG+GGG | + | chr6_1:54526599-54526618 | None:intergenic | 15.0% |
| !!! | GTTTATATATATAGCTATTT+TGG | + | chr6_1:54526601-54526620 | None:intergenic | 15.0% |
| !! | ATTTACCATACAATAAAATA+CGG | + | chr6_1:54527092-54527111 | None:intergenic | 15.0% |
| !!! | ATATTGATTAATGAAAATTC+AGG | - | chr6_1:54527160-54527179 | Msa0888980:intron | 15.0% |
| !! | ATTCATTATATGTTAATGTT+TGG | - | chr6_1:54528238-54528257 | Msa0888980:intron | 15.0% |
| !! | TTAAAATAGAAATTTGATTC+TGG | + | chr6_1:54529019-54529038 | None:intergenic | 15.0% |
| !!! | ATTTTAGTAAATGATCAAAA+TGG | + | chr6_1:54529779-54529798 | None:intergenic | 15.0% |
| !! | GTAAAATAATTATAAACTGA+CGG | + | chr6_1:54529897-54529916 | None:intergenic | 15.0% |
| !! | TTTAGATTGAATAAAAACAA+TGG | - | chr6_1:54530055-54530074 | Msa0888980:CDS | 15.0% |
| !! | TTTCATGTAACTATATTATA+AGG | - | chr6_1:54530204-54530223 | Msa0888980:intron | 15.0% |
| !! | TTGCAAAAAATATTAAGAAA+TGG | + | chr6_1:54530584-54530603 | None:intergenic | 15.0% |
| !!! | TTATATATATAGCTATTTTG+GGG | + | chr6_1:54526599-54526618 | None:intergenic | 15.0% |
| !!! | GTTTATATATATAGCTATTT+TGG | + | chr6_1:54526601-54526620 | None:intergenic | 15.0% |
| !! | ATTTACCATACAATAAAATA+CGG | + | chr6_1:54527092-54527111 | None:intergenic | 15.0% |
| !!! | ATATTGATTAATGAAAATTC+AGG | - | chr6_1:54527160-54527179 | Msa0888980:intron | 15.0% |
| !! | ATTCATTATATGTTAATGTT+TGG | - | chr6_1:54528238-54528257 | Msa0888980:intron | 15.0% |
| !! | TTAAAATAGAAATTTGATTC+TGG | + | chr6_1:54529019-54529038 | None:intergenic | 15.0% |
| !!! | ATTTTAGTAAATGATCAAAA+TGG | + | chr6_1:54529779-54529798 | None:intergenic | 15.0% |
| !! | GTAAAATAATTATAAACTGA+CGG | + | chr6_1:54529897-54529916 | None:intergenic | 15.0% |
| !! | TTTAGATTGAATAAAAACAA+TGG | - | chr6_1:54530055-54530074 | Msa0888980:CDS | 15.0% |
| !! | TTTCATGTAACTATATTATA+AGG | - | chr6_1:54530204-54530223 | Msa0888980:intron | 15.0% |
| !! | TTGCAAAAAATATTAAGAAA+TGG | + | chr6_1:54530584-54530603 | None:intergenic | 15.0% |
| !! | TGACTGAATAACTAATTTAT+TGG | - | chr6_1:54527340-54527359 | Msa0888980:intron | 20.0% |
| !! | AATGTATTGGATTATTATGT+AGG | - | chr6_1:54527497-54527516 | Msa0888980:CDS | 20.0% |
| !!! | TTAGAGACAAAGTTTTAAAT+AGG | + | chr6_1:54528425-54528444 | None:intergenic | 20.0% |
| !! | GAAAAATACATAACATTGTT+GGG | + | chr6_1:54528667-54528686 | None:intergenic | 20.0% |
| !! | TGAAAAATACATAACATTGT+TGG | + | chr6_1:54528668-54528687 | None:intergenic | 20.0% |
| !!! | AACAATGTTATGTATTTTTC+AGG | - | chr6_1:54528667-54528686 | Msa0888980:intron | 20.0% |
| !!! | ACAATGTTATGTATTTTTCA+GGG | - | chr6_1:54528668-54528687 | Msa0888980:intron | 20.0% |
| !! | TGCACAATTAATAAATGAAA+AGG | - | chr6_1:54528715-54528734 | Msa0888980:intron | 20.0% |
| !! | GCACAATTAATAAATGAAAA+GGG | - | chr6_1:54528716-54528735 | Msa0888980:intron | 20.0% |
| !! | TATAATAATTCTGTTACGAT+CGG | + | chr6_1:54529142-54529161 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTCTCAACTTT+TGG | - | chr6_1:54529488-54529507 | Msa0888980:intron | 20.0% |
| !!! | ATCTCTTTTTGTTTGATTAA+GGG | + | chr6_1:54529626-54529645 | None:intergenic | 20.0% |
| !!! | AATCTCTTTTTGTTTGATTA+AGG | + | chr6_1:54529627-54529646 | None:intergenic | 20.0% |
| !!! | AACATTCAAATGTTTTTAAC+TGG | - | chr6_1:54529647-54529666 | Msa0888980:CDS | 20.0% |
| !!! | ACATTCAAATGTTTTTAACT+GGG | - | chr6_1:54529648-54529667 | Msa0888980:CDS | 20.0% |
| !!! | TTTTCAAAATCTGCAAAATA+AGG | + | chr6_1:54529675-54529694 | None:intergenic | 20.0% |
| !!! | AATAAAAACAATGGTCATTT+TGG | - | chr6_1:54530064-54530083 | Msa0888980:intron | 20.0% |
| !! | ATTTACATCCCTAAATTATA+GGG | - | chr6_1:54530481-54530500 | Msa0888980:CDS | 20.0% |
| !! | ATCAATATCCCTATAATTTA+GGG | + | chr6_1:54530492-54530511 | None:intergenic | 20.0% |
| !! | TATCAATATCCCTATAATTT+AGG | + | chr6_1:54530493-54530512 | None:intergenic | 20.0% |
| !! | TGACTGAATAACTAATTTAT+TGG | - | chr6_1:54527340-54527359 | Msa0888980:intron | 20.0% |
| !! | AATGTATTGGATTATTATGT+AGG | - | chr6_1:54527497-54527516 | Msa0888980:CDS | 20.0% |
| !!! | TTAGAGACAAAGTTTTAAAT+AGG | + | chr6_1:54528425-54528444 | None:intergenic | 20.0% |
| !! | GAAAAATACATAACATTGTT+GGG | + | chr6_1:54528667-54528686 | None:intergenic | 20.0% |
| !! | TGAAAAATACATAACATTGT+TGG | + | chr6_1:54528668-54528687 | None:intergenic | 20.0% |
| !!! | AACAATGTTATGTATTTTTC+AGG | - | chr6_1:54528667-54528686 | Msa0888980:intron | 20.0% |
| !!! | ACAATGTTATGTATTTTTCA+GGG | - | chr6_1:54528668-54528687 | Msa0888980:intron | 20.0% |
| !! | TGCACAATTAATAAATGAAA+AGG | - | chr6_1:54528715-54528734 | Msa0888980:intron | 20.0% |
| !! | GCACAATTAATAAATGAAAA+GGG | - | chr6_1:54528716-54528735 | Msa0888980:intron | 20.0% |
| !! | TATAATAATTCTGTTACGAT+CGG | + | chr6_1:54529142-54529161 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTCTCAACTTT+TGG | - | chr6_1:54529488-54529507 | Msa0888980:intron | 20.0% |
| !!! | ATCTCTTTTTGTTTGATTAA+GGG | + | chr6_1:54529626-54529645 | None:intergenic | 20.0% |
| !!! | AATCTCTTTTTGTTTGATTA+AGG | + | chr6_1:54529627-54529646 | None:intergenic | 20.0% |
| !!! | AACATTCAAATGTTTTTAAC+TGG | - | chr6_1:54529647-54529666 | Msa0888980:CDS | 20.0% |
| !!! | ACATTCAAATGTTTTTAACT+GGG | - | chr6_1:54529648-54529667 | Msa0888980:CDS | 20.0% |
| !!! | TTTTCAAAATCTGCAAAATA+AGG | + | chr6_1:54529675-54529694 | None:intergenic | 20.0% |
| !!! | AATAAAAACAATGGTCATTT+TGG | - | chr6_1:54530064-54530083 | Msa0888980:intron | 20.0% |
| !! | ATTTACATCCCTAAATTATA+GGG | - | chr6_1:54530481-54530500 | Msa0888980:CDS | 20.0% |
| !! | ATCAATATCCCTATAATTTA+GGG | + | chr6_1:54530492-54530511 | None:intergenic | 20.0% |
| !! | TATCAATATCCCTATAATTT+AGG | + | chr6_1:54530493-54530512 | None:intergenic | 20.0% |
| ! | TCTTGAATATCTCTTACTAA+AGG | - | chr6_1:54526659-54526678 | Msa0888980:three_prime_UTR | 25.0% |
| ! | ATGAAAACAAGATATTTGTG+TGG | + | chr6_1:54526835-54526854 | None:intergenic | 25.0% |
| ! | TCAAGAATATAAATAACCTC+AGG | + | chr6_1:54527293-54527312 | None:intergenic | 25.0% |
| ! | CAGAAAATTCATGATCTTAT+TGG | - | chr6_1:54527672-54527691 | Msa0888980:CDS | 25.0% |
| ! | GATGAGTATTCAAAATTTCA+TGG | - | chr6_1:54527926-54527945 | Msa0888980:intron | 25.0% |
| !!! | TTATTTTGAATGAAGGATCT+TGG | - | chr6_1:54528053-54528072 | Msa0888980:intron | 25.0% |
| !! | ATGTCACGTTTTTCATATTA+CGG | - | chr6_1:54528301-54528320 | Msa0888980:intron | 25.0% |
| !!! | TTATGTATTTTTCAGGGTTT+TGG | - | chr6_1:54528674-54528693 | Msa0888980:intron | 25.0% |
| ! | CAATTAATAAATGAAAAGGG+TGG | - | chr6_1:54528719-54528738 | Msa0888980:intron | 25.0% |
| !! | TCTCTTTTGAATACTTAAGT+AGG | + | chr6_1:54528811-54528830 | None:intergenic | 25.0% |
| !! | AATTGATCCTAAGTCAATTT+TGG | - | chr6_1:54528865-54528884 | Msa0888980:intron | 25.0% |
| ! | TTAGTACTTGTTTGATATCA+TGG | + | chr6_1:54529236-54529255 | None:intergenic | 25.0% |
| ! | TTGTATTTCGTTAGTAAGTT+TGG | + | chr6_1:54529349-54529368 | None:intergenic | 25.0% |
| ! | GATTAAAGCCAAATTTATAG+TGG | - | chr6_1:54529537-54529556 | Msa0888980:CDS | 25.0% |
| !!! | TTGCAGATTTTGAAAAAGAA+AGG | - | chr6_1:54529679-54529698 | Msa0888980:CDS | 25.0% |
| !!! | TGCAGATTTTGAAAAAGAAA+GGG | - | chr6_1:54529680-54529699 | Msa0888980:CDS | 25.0% |
| !!! | AGGGAATTGCATTTTTTTTA+GGG | + | chr6_1:54529830-54529849 | None:intergenic | 25.0% |
| ! | TTCAGATTTATTAATTGACG+TGG | - | chr6_1:54529963-54529982 | Msa0888980:CDS | 25.0% |
| !! | TGTAATTTTCAGAACATACA+AGG | - | chr6_1:54530241-54530260 | Msa0888980:intron | 25.0% |
| ! | CATTTACATCCCTAAATTAT+AGG | - | chr6_1:54530480-54530499 | Msa0888980:CDS | 25.0% |
| !!! | TTTTCGCTTTTTCTTTAATG+TGG | - | chr6_1:54530552-54530571 | Msa0888980:five_prime_UTR | 25.0% |
| ! | TCTTGAATATCTCTTACTAA+AGG | - | chr6_1:54526659-54526678 | Msa0888980:three_prime_UTR | 25.0% |
| ! | ATGAAAACAAGATATTTGTG+TGG | + | chr6_1:54526835-54526854 | None:intergenic | 25.0% |
| ! | TCAAGAATATAAATAACCTC+AGG | + | chr6_1:54527293-54527312 | None:intergenic | 25.0% |
| ! | CAGAAAATTCATGATCTTAT+TGG | - | chr6_1:54527672-54527691 | Msa0888980:CDS | 25.0% |
| ! | GATGAGTATTCAAAATTTCA+TGG | - | chr6_1:54527926-54527945 | Msa0888980:intron | 25.0% |
| !!! | TTATTTTGAATGAAGGATCT+TGG | - | chr6_1:54528053-54528072 | Msa0888980:intron | 25.0% |
| !! | ATGTCACGTTTTTCATATTA+CGG | - | chr6_1:54528301-54528320 | Msa0888980:intron | 25.0% |
| !!! | TTATGTATTTTTCAGGGTTT+TGG | - | chr6_1:54528674-54528693 | Msa0888980:intron | 25.0% |
| ! | CAATTAATAAATGAAAAGGG+TGG | - | chr6_1:54528719-54528738 | Msa0888980:intron | 25.0% |
| !! | TCTCTTTTGAATACTTAAGT+AGG | + | chr6_1:54528811-54528830 | None:intergenic | 25.0% |
| !! | AATTGATCCTAAGTCAATTT+TGG | - | chr6_1:54528865-54528884 | Msa0888980:intron | 25.0% |
| ! | TTAGTACTTGTTTGATATCA+TGG | + | chr6_1:54529236-54529255 | None:intergenic | 25.0% |
| ! | TTGTATTTCGTTAGTAAGTT+TGG | + | chr6_1:54529349-54529368 | None:intergenic | 25.0% |
| ! | GATTAAAGCCAAATTTATAG+TGG | - | chr6_1:54529537-54529556 | Msa0888980:CDS | 25.0% |
| !!! | TTGCAGATTTTGAAAAAGAA+AGG | - | chr6_1:54529679-54529698 | Msa0888980:CDS | 25.0% |
| !!! | TGCAGATTTTGAAAAAGAAA+GGG | - | chr6_1:54529680-54529699 | Msa0888980:CDS | 25.0% |
| !!! | AGGGAATTGCATTTTTTTTA+GGG | + | chr6_1:54529830-54529849 | None:intergenic | 25.0% |
| ! | TTCAGATTTATTAATTGACG+TGG | - | chr6_1:54529963-54529982 | Msa0888980:CDS | 25.0% |
| !! | TGTAATTTTCAGAACATACA+AGG | - | chr6_1:54530241-54530260 | Msa0888980:intron | 25.0% |
| ! | CATTTACATCCCTAAATTAT+AGG | - | chr6_1:54530480-54530499 | Msa0888980:CDS | 25.0% |
| !!! | TTTTCGCTTTTTCTTTAATG+TGG | - | chr6_1:54530552-54530571 | Msa0888980:five_prime_UTR | 25.0% |
| AGTAAGAGATATTCAAGATG+TGG | + | chr6_1:54526657-54526676 | None:intergenic | 30.0% | |
| TACCAATAGGAACTTTAAGT+TGG | - | chr6_1:54526731-54526750 | Msa0888980:three_prime_UTR | 30.0% | |
| GATTCCATTCAGAGAAATTA+AGG | - | chr6_1:54526800-54526819 | Msa0888980:three_prime_UTR | 30.0% | |
| CTTACCTTAATTTCTCTGAA+TGG | + | chr6_1:54526807-54526826 | None:intergenic | 30.0% | |
| ! | TTAAGTTGTTTATCCAGACA+CGG | - | chr6_1:54527066-54527085 | Msa0888980:intron | 30.0% |
| ATTCAACATGATAACTCTAG+AGG | - | chr6_1:54527239-54527258 | Msa0888980:intron | 30.0% | |
| GAATATAAATAACCTCAGGA+TGG | + | chr6_1:54527289-54527308 | None:intergenic | 30.0% | |
| CAGTAGCAAATTTACCATAT+GGG | - | chr6_1:54527571-54527590 | Msa0888980:intron | 30.0% | |
| AGTAGCAAATTTACCATATG+GGG | - | chr6_1:54527572-54527591 | Msa0888980:intron | 30.0% | |
| ! | TAAGTGTTTCTGAGTTAGAA+AGG | - | chr6_1:54527631-54527650 | Msa0888980:intron | 30.0% |
| TCATTATTTGTACTAACCTG+TGG | + | chr6_1:54527738-54527757 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGAATGCAGACAA+TGG | - | chr6_1:54527892-54527911 | Msa0888980:intron | 30.0% |
| CGGTCAATAATTATAAGACA+TGG | + | chr6_1:54528485-54528504 | None:intergenic | 30.0% | |
| TATTAATGGGAAGACATGTT+TGG | + | chr6_1:54528621-54528640 | None:intergenic | 30.0% | |
| TTTGAATACTTAAGTAGGCT+TGG | + | chr6_1:54528806-54528825 | None:intergenic | 30.0% | |
| AAGTATTCAAAAGAGAACAG+AGG | - | chr6_1:54528815-54528834 | Msa0888980:intron | 30.0% | |
| AAAGAGAACAGAGGAATTAA+AGG | - | chr6_1:54528824-54528843 | Msa0888980:intron | 30.0% | |
| AGAGGAATTAAAGGATTTCA+TGG | - | chr6_1:54528833-54528852 | Msa0888980:intron | 30.0% | |
| ! | TCTTCAACCAAAATTGACTT+AGG | + | chr6_1:54528875-54528894 | None:intergenic | 30.0% |
| GCTAAAATTTAATCCAAACC+AGG | + | chr6_1:54528958-54528977 | None:intergenic | 30.0% | |
| CAAAATTGTGTGTATGTGTA+AGG | - | chr6_1:54529095-54529114 | Msa0888980:CDS | 30.0% | |
| !! | ATAATCATTTTAGTCGTGTC+TGG | + | chr6_1:54529382-54529401 | None:intergenic | 30.0% |
| ACTAGAGTAACAATTAGCAA+AGG | + | chr6_1:54529441-54529460 | None:intergenic | 30.0% | |
| TTTAGACTTATGTGCATTCA+AGG | + | chr6_1:54529465-54529484 | None:intergenic | 30.0% | |
| ! | TTTGTTCTCAACTTTTGGTA+TGG | - | chr6_1:54529493-54529512 | Msa0888980:intron | 30.0% |
| !! | GCAGATTTTGAAAAAGAAAG+GGG | - | chr6_1:54529681-54529700 | Msa0888980:CDS | 30.0% |
| AATTTGCATATATGTCTGGA+AGG | + | chr6_1:54529714-54529733 | None:intergenic | 30.0% | |
| AAATGATCAAAATGGTTACC+TGG | + | chr6_1:54529771-54529790 | None:intergenic | 30.0% | |
| !!! | GCATTTTTTTTAGGGTACAA+GGG | + | chr6_1:54529822-54529841 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTTTAGGGTACA+AGG | + | chr6_1:54529823-54529842 | None:intergenic | 30.0% |
| !!! | GAGGGAATTGCATTTTTTTT+AGG | + | chr6_1:54529831-54529850 | None:intergenic | 30.0% |
| ATTCATGTGGAATGAAGAAA+AGG | - | chr6_1:54530264-54530283 | Msa0888980:intron | 30.0% | |
| TTAAAGACATACATGACCAA+AGG | - | chr6_1:54530298-54530317 | Msa0888980:intron | 30.0% | |
| !! | TTTCACATCTTTGAAACCTT+TGG | + | chr6_1:54530317-54530336 | None:intergenic | 30.0% |
| ACATAATTGTGATCTTCGTA+TGG | - | chr6_1:54530351-54530370 | Msa0888980:intron | 30.0% | |
| CATAATTGTGATCTTCGTAT+GGG | - | chr6_1:54530352-54530371 | Msa0888980:intron | 30.0% | |
| !! | CATAAGTAACTTGTTCTTCA+AGG | - | chr6_1:54530642-54530661 | Msa0888980:five_prime_UTR | 30.0% |
| AGTAAGAGATATTCAAGATG+TGG | + | chr6_1:54526657-54526676 | None:intergenic | 30.0% | |
| TACCAATAGGAACTTTAAGT+TGG | - | chr6_1:54526731-54526750 | Msa0888980:three_prime_UTR | 30.0% | |
| GATTCCATTCAGAGAAATTA+AGG | - | chr6_1:54526800-54526819 | Msa0888980:three_prime_UTR | 30.0% | |
| CTTACCTTAATTTCTCTGAA+TGG | + | chr6_1:54526807-54526826 | None:intergenic | 30.0% | |
| ! | TTAAGTTGTTTATCCAGACA+CGG | - | chr6_1:54527066-54527085 | Msa0888980:intron | 30.0% |
| ATTCAACATGATAACTCTAG+AGG | - | chr6_1:54527239-54527258 | Msa0888980:intron | 30.0% | |
| GAATATAAATAACCTCAGGA+TGG | + | chr6_1:54527289-54527308 | None:intergenic | 30.0% | |
| CAGTAGCAAATTTACCATAT+GGG | - | chr6_1:54527571-54527590 | Msa0888980:intron | 30.0% | |
| AGTAGCAAATTTACCATATG+GGG | - | chr6_1:54527572-54527591 | Msa0888980:intron | 30.0% | |
| ! | TAAGTGTTTCTGAGTTAGAA+AGG | - | chr6_1:54527631-54527650 | Msa0888980:intron | 30.0% |
| TCATTATTTGTACTAACCTG+TGG | + | chr6_1:54527738-54527757 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGAATGCAGACAA+TGG | - | chr6_1:54527892-54527911 | Msa0888980:intron | 30.0% |
| CGGTCAATAATTATAAGACA+TGG | + | chr6_1:54528485-54528504 | None:intergenic | 30.0% | |
| TATTAATGGGAAGACATGTT+TGG | + | chr6_1:54528621-54528640 | None:intergenic | 30.0% | |
| TTTGAATACTTAAGTAGGCT+TGG | + | chr6_1:54528806-54528825 | None:intergenic | 30.0% | |
| AAGTATTCAAAAGAGAACAG+AGG | - | chr6_1:54528815-54528834 | Msa0888980:intron | 30.0% | |
| AAAGAGAACAGAGGAATTAA+AGG | - | chr6_1:54528824-54528843 | Msa0888980:intron | 30.0% | |
| AGAGGAATTAAAGGATTTCA+TGG | - | chr6_1:54528833-54528852 | Msa0888980:intron | 30.0% | |
| ! | TCTTCAACCAAAATTGACTT+AGG | + | chr6_1:54528875-54528894 | None:intergenic | 30.0% |
| GCTAAAATTTAATCCAAACC+AGG | + | chr6_1:54528958-54528977 | None:intergenic | 30.0% | |
| CAAAATTGTGTGTATGTGTA+AGG | - | chr6_1:54529095-54529114 | Msa0888980:CDS | 30.0% | |
| !! | ATAATCATTTTAGTCGTGTC+TGG | + | chr6_1:54529382-54529401 | None:intergenic | 30.0% |
| ACTAGAGTAACAATTAGCAA+AGG | + | chr6_1:54529441-54529460 | None:intergenic | 30.0% | |
| TTTAGACTTATGTGCATTCA+AGG | + | chr6_1:54529465-54529484 | None:intergenic | 30.0% | |
| ! | TTTGTTCTCAACTTTTGGTA+TGG | - | chr6_1:54529493-54529512 | Msa0888980:intron | 30.0% |
| !! | GCAGATTTTGAAAAAGAAAG+GGG | - | chr6_1:54529681-54529700 | Msa0888980:CDS | 30.0% |
| AATTTGCATATATGTCTGGA+AGG | + | chr6_1:54529714-54529733 | None:intergenic | 30.0% | |
| AAATGATCAAAATGGTTACC+TGG | + | chr6_1:54529771-54529790 | None:intergenic | 30.0% | |
| !!! | GCATTTTTTTTAGGGTACAA+GGG | + | chr6_1:54529822-54529841 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTTTAGGGTACA+AGG | + | chr6_1:54529823-54529842 | None:intergenic | 30.0% |
| !!! | GAGGGAATTGCATTTTTTTT+AGG | + | chr6_1:54529831-54529850 | None:intergenic | 30.0% |
| ATTCATGTGGAATGAAGAAA+AGG | - | chr6_1:54530264-54530283 | Msa0888980:intron | 30.0% | |
| TTAAAGACATACATGACCAA+AGG | - | chr6_1:54530298-54530317 | Msa0888980:intron | 30.0% | |
| !! | TTTCACATCTTTGAAACCTT+TGG | + | chr6_1:54530317-54530336 | None:intergenic | 30.0% |
| ACATAATTGTGATCTTCGTA+TGG | - | chr6_1:54530351-54530370 | Msa0888980:intron | 30.0% | |
| CATAATTGTGATCTTCGTAT+GGG | - | chr6_1:54530352-54530371 | Msa0888980:intron | 30.0% | |
| !! | CATAAGTAACTTGTTCTTCA+AGG | - | chr6_1:54530642-54530661 | Msa0888980:five_prime_UTR | 30.0% |
| AAATCCAACATATGTAGCCA+AGG | + | chr6_1:54527216-54527235 | None:intergenic | 35.0% | |
| TGGCTACATATGTTGGATTT+AGG | - | chr6_1:54527216-54527235 | Msa0888980:intron | 35.0% | |
| TTTATTGGATTAAACCCACC+TGG | - | chr6_1:54527355-54527374 | Msa0888980:intron | 35.0% | |
| TTATTGGATTAAACCCACCT+GGG | - | chr6_1:54527356-54527375 | Msa0888980:intron | 35.0% | |
| CATTAGCACAACTAATGACA+TGG | - | chr6_1:54527541-54527560 | Msa0888980:CDS | 35.0% | |
| GCAGTAGCAAATTTACCATA+TGG | - | chr6_1:54527570-54527589 | Msa0888980:intron | 35.0% | |
| GTAGCAAATTTACCATATGG+GGG | - | chr6_1:54527573-54527592 | Msa0888980:intron | 35.0% | |
| CAGAAACACTTAACTCTGAA+GGG | + | chr6_1:54527623-54527642 | None:intergenic | 35.0% | |
| TCAGAAACACTTAACTCTGA+AGG | + | chr6_1:54527624-54527643 | None:intergenic | 35.0% | |
| ! | TTTTGAATGAAGGATCTTGG+TGG | - | chr6_1:54528056-54528075 | Msa0888980:intron | 35.0% |
| GAGGCTTTGCTTAATGAATA+TGG | - | chr6_1:54528128-54528147 | Msa0888980:intron | 35.0% | |
| ! | GAATATGGAAAGAGTGTATC+TGG | - | chr6_1:54528143-54528162 | Msa0888980:intron | 35.0% |
| !!! | TCTGACTAGGTTTTAAATCG+CGG | - | chr6_1:54528270-54528289 | Msa0888980:intron | 35.0% |
| ! | TCACGTTTTTCATATTACGG+AGG | - | chr6_1:54528304-54528323 | Msa0888980:intron | 35.0% |
| GATCATAGACATGATAGCTT+TGG | - | chr6_1:54528366-54528385 | Msa0888980:CDS | 35.0% | |
| TATTGACCGCATAACTATGA+TGG | - | chr6_1:54528496-54528515 | Msa0888980:CDS | 35.0% | |
| ACAGTACCATCATAGTTATG+CGG | + | chr6_1:54528505-54528524 | None:intergenic | 35.0% | |
| ! | ATAACGCGTCACAATGATTT+TGG | + | chr6_1:54528559-54528578 | None:intergenic | 35.0% |
| TAACGATGACATTGTGATTC+TGG | - | chr6_1:54528579-54528598 | Msa0888980:intron | 35.0% | |
| !!! | TTTTCAGGGTTTTGGAAATG+TGG | - | chr6_1:54528682-54528701 | Msa0888980:intron | 35.0% |
| !!! | TTTCAGGGTTTTGGAAATGT+GGG | - | chr6_1:54528683-54528702 | Msa0888980:intron | 35.0% |
| GGAGCTATAAAGAATAGCAA+TGG | - | chr6_1:54528770-54528789 | Msa0888980:intron | 35.0% | |
| GGAATTAAAGGATTTCATGG+TGG | - | chr6_1:54528836-54528855 | Msa0888980:intron | 35.0% | |
| AATTGTGTGTATGTGTAAGG+TGG | - | chr6_1:54529098-54529117 | Msa0888980:CDS | 35.0% | |
| ATGCATGTTTGATATCACGA+TGG | - | chr6_1:54529166-54529185 | Msa0888980:CDS | 35.0% | |
| TGTTTGATATCACGATGGAT+TGG | - | chr6_1:54529171-54529190 | Msa0888980:CDS | 35.0% | |
| ! | TCAACTTTTGGTATGGATGA+AGG | - | chr6_1:54529500-54529519 | Msa0888980:intron | 35.0% |
| ! | CAACTTTTGGTATGGATGAA+GGG | - | chr6_1:54529501-54529520 | Msa0888980:intron | 35.0% |
| CCTGAATTTGCATATATGTC+TGG | + | chr6_1:54529718-54529737 | None:intergenic | 35.0% | |
| CCAGACATATATGCAAATTC+AGG | - | chr6_1:54529715-54529734 | Msa0888980:CDS | 35.0% | |
| GACATATATGCAAATTCAGG+AGG | - | chr6_1:54529718-54529737 | Msa0888980:CDS | 35.0% | |
| ! | TTACAGTTAGCTACTTTGAG+TGG | - | chr6_1:54529743-54529762 | Msa0888980:intron | 35.0% |
| ! | TACAGTTAGCTACTTTGAGT+GGG | - | chr6_1:54529744-54529763 | Msa0888980:intron | 35.0% |
| AGAACATACAAGGATTCATG+TGG | - | chr6_1:54530251-54530270 | Msa0888980:intron | 35.0% | |
| TAGGGATGTAAATGCAAGAA+TGG | + | chr6_1:54530474-54530493 | None:intergenic | 35.0% | |
| AAATCCAACATATGTAGCCA+AGG | + | chr6_1:54527216-54527235 | None:intergenic | 35.0% | |
| TGGCTACATATGTTGGATTT+AGG | - | chr6_1:54527216-54527235 | Msa0888980:intron | 35.0% | |
| TTTATTGGATTAAACCCACC+TGG | - | chr6_1:54527355-54527374 | Msa0888980:intron | 35.0% | |
| TTATTGGATTAAACCCACCT+GGG | - | chr6_1:54527356-54527375 | Msa0888980:intron | 35.0% | |
| CATTAGCACAACTAATGACA+TGG | - | chr6_1:54527541-54527560 | Msa0888980:CDS | 35.0% | |
| GCAGTAGCAAATTTACCATA+TGG | - | chr6_1:54527570-54527589 | Msa0888980:intron | 35.0% | |
| GTAGCAAATTTACCATATGG+GGG | - | chr6_1:54527573-54527592 | Msa0888980:intron | 35.0% | |
| CAGAAACACTTAACTCTGAA+GGG | + | chr6_1:54527623-54527642 | None:intergenic | 35.0% | |
| TCAGAAACACTTAACTCTGA+AGG | + | chr6_1:54527624-54527643 | None:intergenic | 35.0% | |
| ! | TTTTGAATGAAGGATCTTGG+TGG | - | chr6_1:54528056-54528075 | Msa0888980:intron | 35.0% |
| GAGGCTTTGCTTAATGAATA+TGG | - | chr6_1:54528128-54528147 | Msa0888980:intron | 35.0% | |
| ! | GAATATGGAAAGAGTGTATC+TGG | - | chr6_1:54528143-54528162 | Msa0888980:intron | 35.0% |
| !!! | TCTGACTAGGTTTTAAATCG+CGG | - | chr6_1:54528270-54528289 | Msa0888980:intron | 35.0% |
| ! | TCACGTTTTTCATATTACGG+AGG | - | chr6_1:54528304-54528323 | Msa0888980:intron | 35.0% |
| GATCATAGACATGATAGCTT+TGG | - | chr6_1:54528366-54528385 | Msa0888980:CDS | 35.0% | |
| TATTGACCGCATAACTATGA+TGG | - | chr6_1:54528496-54528515 | Msa0888980:CDS | 35.0% | |
| ACAGTACCATCATAGTTATG+CGG | + | chr6_1:54528505-54528524 | None:intergenic | 35.0% | |
| ! | ATAACGCGTCACAATGATTT+TGG | + | chr6_1:54528559-54528578 | None:intergenic | 35.0% |
| TAACGATGACATTGTGATTC+TGG | - | chr6_1:54528579-54528598 | Msa0888980:intron | 35.0% | |
| !!! | TTTTCAGGGTTTTGGAAATG+TGG | - | chr6_1:54528682-54528701 | Msa0888980:intron | 35.0% |
| !!! | TTTCAGGGTTTTGGAAATGT+GGG | - | chr6_1:54528683-54528702 | Msa0888980:intron | 35.0% |
| GGAGCTATAAAGAATAGCAA+TGG | - | chr6_1:54528770-54528789 | Msa0888980:intron | 35.0% | |
| GGAATTAAAGGATTTCATGG+TGG | - | chr6_1:54528836-54528855 | Msa0888980:intron | 35.0% | |
| AATTGTGTGTATGTGTAAGG+TGG | - | chr6_1:54529098-54529117 | Msa0888980:CDS | 35.0% | |
| ATGCATGTTTGATATCACGA+TGG | - | chr6_1:54529166-54529185 | Msa0888980:CDS | 35.0% | |
| TGTTTGATATCACGATGGAT+TGG | - | chr6_1:54529171-54529190 | Msa0888980:CDS | 35.0% | |
| ! | TCAACTTTTGGTATGGATGA+AGG | - | chr6_1:54529500-54529519 | Msa0888980:intron | 35.0% |
| ! | CAACTTTTGGTATGGATGAA+GGG | - | chr6_1:54529501-54529520 | Msa0888980:intron | 35.0% |
| CCTGAATTTGCATATATGTC+TGG | + | chr6_1:54529718-54529737 | None:intergenic | 35.0% | |
| CCAGACATATATGCAAATTC+AGG | - | chr6_1:54529715-54529734 | Msa0888980:CDS | 35.0% | |
| GACATATATGCAAATTCAGG+AGG | - | chr6_1:54529718-54529737 | Msa0888980:CDS | 35.0% | |
| ! | TTACAGTTAGCTACTTTGAG+TGG | - | chr6_1:54529743-54529762 | Msa0888980:intron | 35.0% |
| ! | TACAGTTAGCTACTTTGAGT+GGG | - | chr6_1:54529744-54529763 | Msa0888980:intron | 35.0% |
| AGAACATACAAGGATTCATG+TGG | - | chr6_1:54530251-54530270 | Msa0888980:intron | 35.0% | |
| TAGGGATGTAAATGCAAGAA+TGG | + | chr6_1:54530474-54530493 | None:intergenic | 35.0% | |
| TGCTAGTGCATTCATTGGTA+AGG | + | chr6_1:54526709-54526728 | None:intergenic | 40.0% | |
| GGCCAACTTAAAGTTCCTAT+TGG | + | chr6_1:54526736-54526755 | None:intergenic | 40.0% | |
| ! | CACGGCCGTATTTTATTGTA+TGG | - | chr6_1:54527084-54527103 | Msa0888980:intron | 40.0% |
| TGTAGCATCCCTAAAGATGA+TGG | - | chr6_1:54527188-54527207 | Msa0888980:intron | 40.0% | |
| CCAAGGTTCCATCATCTTTA+GGG | + | chr6_1:54527199-54527218 | None:intergenic | 40.0% | |
| ATCTGATCCCTCCTTTCATA+GGG | + | chr6_1:54527265-54527284 | None:intergenic | 40.0% | |
| TATCTGATCCCTCCTTTCAT+AGG | + | chr6_1:54527266-54527285 | None:intergenic | 40.0% | |
| ATTCTCCCCGATGCTAATTT+GGG | - | chr6_1:54527440-54527459 | Msa0888980:intron | 40.0% | |
| TAACCCACCCAAATTAGCAT+CGG | + | chr6_1:54527450-54527469 | None:intergenic | 40.0% | |
| GCTAATGCATTCACTTCATC+TGG | + | chr6_1:54527528-54527547 | None:intergenic | 40.0% | |
| TTTGAATGCAGACAATGGCA+TGG | - | chr6_1:54527897-54527916 | Msa0888980:intron | 40.0% | |
| ! | GAAAGAGTGTATCTGGTCAA+CGG | - | chr6_1:54528150-54528169 | Msa0888980:intron | 40.0% |
| !! | TGGTCAACGGTTTGTTATAC+AGG | - | chr6_1:54528163-54528182 | Msa0888980:intron | 40.0% |
| !!! | TTCAGGGTTTTGGAAATGTG+GGG | - | chr6_1:54528684-54528703 | Msa0888980:intron | 40.0% |
| !! | TTTTGGAAATGTGGGGTCAT+GGG | - | chr6_1:54528691-54528710 | Msa0888980:intron | 40.0% |
| GTTGCTGTAAGTGACATAAC+AGG | - | chr6_1:54528749-54528768 | Msa0888980:intron | 40.0% | |
| TAGGTACTTTCACATAAGCC+TGG | - | chr6_1:54528937-54528956 | Msa0888980:intron | 40.0% | |
| ACTTTCACATAAGCCTGGTT+TGG | - | chr6_1:54528942-54528961 | Msa0888980:intron | 40.0% | |
| !! | CGATGGATTGGAAGAAATCA+CGG | - | chr6_1:54529183-54529202 | Msa0888980:intron | 40.0% |
| GGCTGCTTCCACTATAAATT+TGG | + | chr6_1:54529548-54529567 | None:intergenic | 40.0% | |
| AACTAACCTCATCAGCATCT+GGG | + | chr6_1:54529585-54529604 | None:intergenic | 40.0% | |
| AAACTAACCTCATCAGCATC+TGG | + | chr6_1:54529586-54529605 | None:intergenic | 40.0% | |
| AAACCTTCCTTGATGTACGA+GGG | + | chr6_1:54529849-54529868 | None:intergenic | 40.0% | |
| TAAACCTTCCTTGATGTACG+AGG | + | chr6_1:54529850-54529869 | None:intergenic | 40.0% | |
| ACGGTTAACTGCAAGTGTAA+AGG | + | chr6_1:54530380-54530399 | None:intergenic | 40.0% | |
| TTTAAGCTTCCCAACCTCTA+AGG | + | chr6_1:54530420-54530439 | None:intergenic | 40.0% | |
| TGCTAGTGCATTCATTGGTA+AGG | + | chr6_1:54526709-54526728 | None:intergenic | 40.0% | |
| GGCCAACTTAAAGTTCCTAT+TGG | + | chr6_1:54526736-54526755 | None:intergenic | 40.0% | |
| ! | CACGGCCGTATTTTATTGTA+TGG | - | chr6_1:54527084-54527103 | Msa0888980:intron | 40.0% |
| TGTAGCATCCCTAAAGATGA+TGG | - | chr6_1:54527188-54527207 | Msa0888980:intron | 40.0% | |
| CCAAGGTTCCATCATCTTTA+GGG | + | chr6_1:54527199-54527218 | None:intergenic | 40.0% | |
| ATCTGATCCCTCCTTTCATA+GGG | + | chr6_1:54527265-54527284 | None:intergenic | 40.0% | |
| TATCTGATCCCTCCTTTCAT+AGG | + | chr6_1:54527266-54527285 | None:intergenic | 40.0% | |
| ATTCTCCCCGATGCTAATTT+GGG | - | chr6_1:54527440-54527459 | Msa0888980:intron | 40.0% | |
| TAACCCACCCAAATTAGCAT+CGG | + | chr6_1:54527450-54527469 | None:intergenic | 40.0% | |
| GCTAATGCATTCACTTCATC+TGG | + | chr6_1:54527528-54527547 | None:intergenic | 40.0% | |
| TTTGAATGCAGACAATGGCA+TGG | - | chr6_1:54527897-54527916 | Msa0888980:intron | 40.0% | |
| ! | GAAAGAGTGTATCTGGTCAA+CGG | - | chr6_1:54528150-54528169 | Msa0888980:intron | 40.0% |
| !! | TGGTCAACGGTTTGTTATAC+AGG | - | chr6_1:54528163-54528182 | Msa0888980:intron | 40.0% |
| !!! | TTCAGGGTTTTGGAAATGTG+GGG | - | chr6_1:54528684-54528703 | Msa0888980:intron | 40.0% |
| !! | TTTTGGAAATGTGGGGTCAT+GGG | - | chr6_1:54528691-54528710 | Msa0888980:intron | 40.0% |
| GTTGCTGTAAGTGACATAAC+AGG | - | chr6_1:54528749-54528768 | Msa0888980:intron | 40.0% | |
| TAGGTACTTTCACATAAGCC+TGG | - | chr6_1:54528937-54528956 | Msa0888980:intron | 40.0% | |
| ACTTTCACATAAGCCTGGTT+TGG | - | chr6_1:54528942-54528961 | Msa0888980:intron | 40.0% | |
| !! | CGATGGATTGGAAGAAATCA+CGG | - | chr6_1:54529183-54529202 | Msa0888980:intron | 40.0% |
| GGCTGCTTCCACTATAAATT+TGG | + | chr6_1:54529548-54529567 | None:intergenic | 40.0% | |
| AACTAACCTCATCAGCATCT+GGG | + | chr6_1:54529585-54529604 | None:intergenic | 40.0% | |
| AAACTAACCTCATCAGCATC+TGG | + | chr6_1:54529586-54529605 | None:intergenic | 40.0% | |
| AAACCTTCCTTGATGTACGA+GGG | + | chr6_1:54529849-54529868 | None:intergenic | 40.0% | |
| TAAACCTTCCTTGATGTACG+AGG | + | chr6_1:54529850-54529869 | None:intergenic | 40.0% | |
| ACGGTTAACTGCAAGTGTAA+AGG | + | chr6_1:54530380-54530399 | None:intergenic | 40.0% | |
| TTTAAGCTTCCCAACCTCTA+AGG | + | chr6_1:54530420-54530439 | None:intergenic | 40.0% | |
| GTAGCTGCTAGTGCATTCAT+TGG | + | chr6_1:54526714-54526733 | None:intergenic | 45.0% | |
| ATGCACTAGCAGCTACCAAT+AGG | - | chr6_1:54526718-54526737 | Msa0888980:three_prime_UTR | 45.0% | |
| !! | GGAACTTTAAGTTGGCCTCT+AGG | - | chr6_1:54526739-54526758 | Msa0888980:three_prime_UTR | 45.0% |
| !! | TAAGTTGGCCTCTAGGCTTT+TGG | - | chr6_1:54526746-54526765 | Msa0888980:three_prime_UTR | 45.0% |
| !! | AAGTTGGCCTCTAGGCTTTT+GGG | - | chr6_1:54526747-54526766 | Msa0888980:three_prime_UTR | 45.0% |
| ATCCAATCCCAAAAGCCTAG+AGG | + | chr6_1:54526757-54526776 | None:intergenic | 45.0% | |
| CAATAAAATACGGCCGTGTC+TGG | + | chr6_1:54527082-54527101 | None:intergenic | 45.0% | |
| !! | CCCTAAAGATGATGGAACCT+TGG | - | chr6_1:54527196-54527215 | Msa0888980:intron | 45.0% |
| GCCAAGGTTCCATCATCTTT+AGG | + | chr6_1:54527200-54527219 | None:intergenic | 45.0% | |
| GGAACCTTGGCTACATATGT+TGG | - | chr6_1:54527209-54527228 | Msa0888980:intron | 45.0% | |
| ! | AACTCTAGAGGCCCTATGAA+AGG | - | chr6_1:54527251-54527270 | Msa0888980:intron | 45.0% |
| !! | TTGGTTTGGTGGTGTTGGTT+TGG | - | chr6_1:54527379-54527398 | Msa0888980:intron | 45.0% |
| !! | TGGTTTGGTGGTGTTGGTTT+GGG | - | chr6_1:54527380-54527399 | Msa0888980:intron | 45.0% |
| TTGGAGTATGTTCCTGCTCA+AGG | - | chr6_1:54527406-54527425 | Msa0888980:intron | 45.0% | |
| GATTCTCCCCGATGCTAATT+TGG | - | chr6_1:54527439-54527458 | Msa0888980:intron | 45.0% | |
| AACCCACCCAAATTAGCATC+GGG | + | chr6_1:54527449-54527468 | None:intergenic | 45.0% | |
| TGATGTTCCTGCACCTGATA+TGG | - | chr6_1:54527704-54527723 | Msa0888980:CDS | 45.0% | |
| GATGTTCCTGCACCTGATAT+GGG | - | chr6_1:54527705-54527724 | Msa0888980:CDS | 45.0% | |
| TGTAGCACAGACACTTCTGA+TGG | - | chr6_1:54527807-54527826 | Msa0888980:intron | 45.0% | |
| ! | CTTCTGATGGAAGGTGTGTT+AGG | - | chr6_1:54527820-54527839 | Msa0888980:intron | 45.0% |
| ! | AAGGATCTTGGTGGATCTCT+AGG | - | chr6_1:54528065-54528084 | Msa0888980:intron | 45.0% |
| ! | TTGGACTAGAGACTCTGACT+AGG | - | chr6_1:54528257-54528276 | Msa0888980:intron | 45.0% |
| TGGTATTGCAACCTTGAACG+TGG | - | chr6_1:54528386-54528405 | Msa0888980:CDS | 45.0% | |
| !!! | GTTTTGGAAATGTGGGGTCA+TGG | - | chr6_1:54528690-54528709 | Msa0888980:intron | 45.0% |
| CTCTTGGTGGAGTCATCAAT+AGG | - | chr6_1:54528918-54528937 | Msa0888980:intron | 45.0% | |
| ! | TGGATTGGAAGAAATCACGG+TGG | - | chr6_1:54529186-54529205 | Msa0888980:intron | 45.0% |
| TGCAATTCCCTCGTACATCA+AGG | - | chr6_1:54529839-54529858 | Msa0888980:intron | 45.0% | |
| ATTCCCTCGTACATCAAGGA+AGG | - | chr6_1:54529843-54529862 | Msa0888980:intron | 45.0% | |
| TTGCAGTTAACCGTGTAGCA+AGG | - | chr6_1:54530386-54530405 | Msa0888980:intron | 45.0% | |
| TGCAGTTAACCGTGTAGCAA+GGG | - | chr6_1:54530387-54530406 | Msa0888980:intron | 45.0% | |
| GTAGCTGCTAGTGCATTCAT+TGG | + | chr6_1:54526714-54526733 | None:intergenic | 45.0% | |
| ATGCACTAGCAGCTACCAAT+AGG | - | chr6_1:54526718-54526737 | Msa0888980:three_prime_UTR | 45.0% | |
| !! | GGAACTTTAAGTTGGCCTCT+AGG | - | chr6_1:54526739-54526758 | Msa0888980:three_prime_UTR | 45.0% |
| !! | TAAGTTGGCCTCTAGGCTTT+TGG | - | chr6_1:54526746-54526765 | Msa0888980:three_prime_UTR | 45.0% |
| !! | AAGTTGGCCTCTAGGCTTTT+GGG | - | chr6_1:54526747-54526766 | Msa0888980:three_prime_UTR | 45.0% |
| ATCCAATCCCAAAAGCCTAG+AGG | + | chr6_1:54526757-54526776 | None:intergenic | 45.0% | |
| CAATAAAATACGGCCGTGTC+TGG | + | chr6_1:54527082-54527101 | None:intergenic | 45.0% | |
| !! | CCCTAAAGATGATGGAACCT+TGG | - | chr6_1:54527196-54527215 | Msa0888980:intron | 45.0% |
| GCCAAGGTTCCATCATCTTT+AGG | + | chr6_1:54527200-54527219 | None:intergenic | 45.0% | |
| GGAACCTTGGCTACATATGT+TGG | - | chr6_1:54527209-54527228 | Msa0888980:intron | 45.0% | |
| ! | AACTCTAGAGGCCCTATGAA+AGG | - | chr6_1:54527251-54527270 | Msa0888980:intron | 45.0% |
| !! | TTGGTTTGGTGGTGTTGGTT+TGG | - | chr6_1:54527379-54527398 | Msa0888980:intron | 45.0% |
| !! | TGGTTTGGTGGTGTTGGTTT+GGG | - | chr6_1:54527380-54527399 | Msa0888980:intron | 45.0% |
| TTGGAGTATGTTCCTGCTCA+AGG | - | chr6_1:54527406-54527425 | Msa0888980:intron | 45.0% | |
| GATTCTCCCCGATGCTAATT+TGG | - | chr6_1:54527439-54527458 | Msa0888980:intron | 45.0% | |
| AACCCACCCAAATTAGCATC+GGG | + | chr6_1:54527449-54527468 | None:intergenic | 45.0% | |
| TGATGTTCCTGCACCTGATA+TGG | - | chr6_1:54527704-54527723 | Msa0888980:CDS | 45.0% | |
| GATGTTCCTGCACCTGATAT+GGG | - | chr6_1:54527705-54527724 | Msa0888980:CDS | 45.0% | |
| TGTAGCACAGACACTTCTGA+TGG | - | chr6_1:54527807-54527826 | Msa0888980:intron | 45.0% | |
| ! | CTTCTGATGGAAGGTGTGTT+AGG | - | chr6_1:54527820-54527839 | Msa0888980:intron | 45.0% |
| ! | AAGGATCTTGGTGGATCTCT+AGG | - | chr6_1:54528065-54528084 | Msa0888980:intron | 45.0% |
| ! | TTGGACTAGAGACTCTGACT+AGG | - | chr6_1:54528257-54528276 | Msa0888980:intron | 45.0% |
| TGGTATTGCAACCTTGAACG+TGG | - | chr6_1:54528386-54528405 | Msa0888980:CDS | 45.0% | |
| !!! | GTTTTGGAAATGTGGGGTCA+TGG | - | chr6_1:54528690-54528709 | Msa0888980:intron | 45.0% |
| CTCTTGGTGGAGTCATCAAT+AGG | - | chr6_1:54528918-54528937 | Msa0888980:intron | 45.0% | |
| ! | TGGATTGGAAGAAATCACGG+TGG | - | chr6_1:54529186-54529205 | Msa0888980:intron | 45.0% |
| TGCAATTCCCTCGTACATCA+AGG | - | chr6_1:54529839-54529858 | Msa0888980:intron | 45.0% | |
| ATTCCCTCGTACATCAAGGA+AGG | - | chr6_1:54529843-54529862 | Msa0888980:intron | 45.0% | |
| TTGCAGTTAACCGTGTAGCA+AGG | - | chr6_1:54530386-54530405 | Msa0888980:intron | 45.0% | |
| TGCAGTTAACCGTGTAGCAA+GGG | - | chr6_1:54530387-54530406 | Msa0888980:intron | 45.0% | |
| TCTAGAGGCCCTATGAAAGG+AGG | - | chr6_1:54527254-54527273 | Msa0888980:intron | 50.0% | |
| CTAGAGGCCCTATGAAAGGA+GGG | - | chr6_1:54527255-54527274 | Msa0888980:intron | 50.0% | |
| AGGGATCAGATACCATCCTG+AGG | - | chr6_1:54527274-54527293 | Msa0888980:intron | 50.0% | |
| TGGATTAAACCCACCTGGGT+TGG | - | chr6_1:54527360-54527379 | Msa0888980:intron | 50.0% | |
| !! | TAAACCCACCTGGGTTGGTT+TGG | - | chr6_1:54527365-54527384 | Msa0888980:intron | 50.0% |
| !! | GTGGTGTTGGTTTGGGATCT+TGG | - | chr6_1:54527387-54527406 | Msa0888980:intron | 50.0% |
| TCGAACTTGAGACCTTGAGC+AGG | + | chr6_1:54527421-54527440 | None:intergenic | 50.0% | |
| TCCCCGATGCTAATTTGGGT+GGG | - | chr6_1:54527444-54527463 | Msa0888980:intron | 50.0% | |
| ACCCACCCAAATTAGCATCG+GGG | + | chr6_1:54527448-54527467 | None:intergenic | 50.0% | |
| !! | TTACCATATGGGGGTGCCAA+AGG | - | chr6_1:54527582-54527601 | Msa0888980:intron | 50.0% |
| GTCAACCCCTATACCTCCTT+TGG | + | chr6_1:54527601-54527620 | None:intergenic | 50.0% | |
| TGTGGTCCTGTTCCCATATC+AGG | + | chr6_1:54527720-54527739 | None:intergenic | 50.0% | |
| TGATATGGGAACAGGACCAC+AGG | - | chr6_1:54527719-54527738 | Msa0888980:intron | 50.0% | |
| GCACAGACACTTCTGATGGA+AGG | - | chr6_1:54527811-54527830 | Msa0888980:intron | 50.0% | |
| CTGTCACTACTGCAGGAGAA+TGG | + | chr6_1:54527952-54527971 | None:intergenic | 50.0% | |
| CATTCTCCTGCAGTAGTGAC+AGG | - | chr6_1:54527950-54527969 | Msa0888980:intron | 50.0% | |
| ! | GGTTTTCCTGTCACTACTGC+AGG | + | chr6_1:54527959-54527978 | None:intergenic | 50.0% |
| CTAGGAAGAGATGCAGCTAC+AGG | - | chr6_1:54528083-54528102 | Msa0888980:intron | 50.0% | |
| AGAGATGCAGCTACAGGAAG+AGG | - | chr6_1:54528089-54528108 | Msa0888980:intron | 50.0% | |
| AGGTGTCCTCTTTGCAACTG+AGG | - | chr6_1:54528109-54528128 | Msa0888980:intron | 50.0% | |
| GCAAAGCCTCAGTTGCAAAG+AGG | + | chr6_1:54528118-54528137 | None:intergenic | 50.0% | |
| GTTCTTATCCCTGCTGCTCT+TGG | - | chr6_1:54528902-54528921 | Msa0888980:intron | 50.0% | |
| ATCTGGGTCAGTTGGGTGAT+TGG | + | chr6_1:54529569-54529588 | None:intergenic | 50.0% | |
| CATCAGCATCTGGGTCAGTT+GGG | + | chr6_1:54529576-54529595 | None:intergenic | 50.0% | |
| TCATCAGCATCTGGGTCAGT+TGG | + | chr6_1:54529577-54529596 | None:intergenic | 50.0% | |
| AACTGACCCAGATGCTGATG+AGG | - | chr6_1:54529576-54529595 | Msa0888980:CDS | 50.0% | |
| ! | TAGCTACTTTGAGTGGGTCC+AGG | - | chr6_1:54529750-54529769 | Msa0888980:intron | 50.0% |
| ! | TTCCCAACCTCTAAGGACAG+TGG | + | chr6_1:54530413-54530432 | None:intergenic | 50.0% |
| TCTAGAGGCCCTATGAAAGG+AGG | - | chr6_1:54527254-54527273 | Msa0888980:intron | 50.0% | |
| CTAGAGGCCCTATGAAAGGA+GGG | - | chr6_1:54527255-54527274 | Msa0888980:intron | 50.0% | |
| AGGGATCAGATACCATCCTG+AGG | - | chr6_1:54527274-54527293 | Msa0888980:intron | 50.0% | |
| TGGATTAAACCCACCTGGGT+TGG | - | chr6_1:54527360-54527379 | Msa0888980:intron | 50.0% | |
| !! | TAAACCCACCTGGGTTGGTT+TGG | - | chr6_1:54527365-54527384 | Msa0888980:intron | 50.0% |
| !! | GTGGTGTTGGTTTGGGATCT+TGG | - | chr6_1:54527387-54527406 | Msa0888980:intron | 50.0% |
| TCGAACTTGAGACCTTGAGC+AGG | + | chr6_1:54527421-54527440 | None:intergenic | 50.0% | |
| TCCCCGATGCTAATTTGGGT+GGG | - | chr6_1:54527444-54527463 | Msa0888980:intron | 50.0% | |
| ACCCACCCAAATTAGCATCG+GGG | + | chr6_1:54527448-54527467 | None:intergenic | 50.0% | |
| !! | TTACCATATGGGGGTGCCAA+AGG | - | chr6_1:54527582-54527601 | Msa0888980:intron | 50.0% |
| GTCAACCCCTATACCTCCTT+TGG | + | chr6_1:54527601-54527620 | None:intergenic | 50.0% | |
| TGTGGTCCTGTTCCCATATC+AGG | + | chr6_1:54527720-54527739 | None:intergenic | 50.0% | |
| TGATATGGGAACAGGACCAC+AGG | - | chr6_1:54527719-54527738 | Msa0888980:intron | 50.0% | |
| GCACAGACACTTCTGATGGA+AGG | - | chr6_1:54527811-54527830 | Msa0888980:intron | 50.0% | |
| CTGTCACTACTGCAGGAGAA+TGG | + | chr6_1:54527952-54527971 | None:intergenic | 50.0% | |
| CATTCTCCTGCAGTAGTGAC+AGG | - | chr6_1:54527950-54527969 | Msa0888980:intron | 50.0% | |
| ! | GGTTTTCCTGTCACTACTGC+AGG | + | chr6_1:54527959-54527978 | None:intergenic | 50.0% |
| CTAGGAAGAGATGCAGCTAC+AGG | - | chr6_1:54528083-54528102 | Msa0888980:intron | 50.0% | |
| AGAGATGCAGCTACAGGAAG+AGG | - | chr6_1:54528089-54528108 | Msa0888980:intron | 50.0% | |
| AGGTGTCCTCTTTGCAACTG+AGG | - | chr6_1:54528109-54528128 | Msa0888980:intron | 50.0% | |
| GCAAAGCCTCAGTTGCAAAG+AGG | + | chr6_1:54528118-54528137 | None:intergenic | 50.0% | |
| GTTCTTATCCCTGCTGCTCT+TGG | - | chr6_1:54528902-54528921 | Msa0888980:intron | 50.0% | |
| ATCTGGGTCAGTTGGGTGAT+TGG | + | chr6_1:54529569-54529588 | None:intergenic | 50.0% | |
| CATCAGCATCTGGGTCAGTT+GGG | + | chr6_1:54529576-54529595 | None:intergenic | 50.0% | |
| TCATCAGCATCTGGGTCAGT+TGG | + | chr6_1:54529577-54529596 | None:intergenic | 50.0% | |
| AACTGACCCAGATGCTGATG+AGG | - | chr6_1:54529576-54529595 | Msa0888980:CDS | 50.0% | |
| ! | TAGCTACTTTGAGTGGGTCC+AGG | - | chr6_1:54529750-54529769 | Msa0888980:intron | 50.0% |
| ! | TTCCCAACCTCTAAGGACAG+TGG | + | chr6_1:54530413-54530432 | None:intergenic | 50.0% |
| !!! | GGCCTCTAGGCTTTTGGGAT+TGG | - | chr6_1:54526752-54526771 | Msa0888980:three_prime_UTR | 55.0% |
| ACCACCAAACCAACCCAGGT+GGG | + | chr6_1:54527372-54527391 | None:intergenic | 55.0% | |
| CAACACCACCAAACCAACCC+AGG | + | chr6_1:54527376-54527395 | None:intergenic | 55.0% | |
| !! | CTGGGTTGGTTTGGTGGTGT+TGG | - | chr6_1:54527374-54527393 | Msa0888980:intron | 55.0% |
| CTCCCCGATGCTAATTTGGG+TGG | - | chr6_1:54527443-54527462 | Msa0888980:intron | 55.0% | |
| ! | GGGGTGCCAAAGGAGGTATA+GGG | - | chr6_1:54527592-54527611 | Msa0888980:intron | 55.0% |
| ! | GGGTGCCAAAGGAGGTATAG+GGG | - | chr6_1:54527593-54527612 | Msa0888980:intron | 55.0% |
| CCTGTTCCCATATCAGGTGC+AGG | + | chr6_1:54527714-54527733 | None:intergenic | 55.0% | |
| CCTGCACCTGATATGGGAAC+AGG | - | chr6_1:54527711-54527730 | Msa0888980:CDS | 55.0% | |
| CTTATCCCTGCTGCTCTTGG+TGG | - | chr6_1:54528905-54528924 | Msa0888980:intron | 55.0% | |
| TGACTCCACCAAGAGCAGCA+GGG | + | chr6_1:54528913-54528932 | None:intergenic | 55.0% | |
| ATGACTCCACCAAGAGCAGC+AGG | + | chr6_1:54528914-54528933 | None:intergenic | 55.0% | |
| GGCCACTGTCCTTAGAGGTT+GGG | - | chr6_1:54530408-54530427 | Msa0888980:intron | 55.0% | |
| !!! | GGCCTCTAGGCTTTTGGGAT+TGG | - | chr6_1:54526752-54526771 | Msa0888980:three_prime_UTR | 55.0% |
| ACCACCAAACCAACCCAGGT+GGG | + | chr6_1:54527372-54527391 | None:intergenic | 55.0% | |
| CAACACCACCAAACCAACCC+AGG | + | chr6_1:54527376-54527395 | None:intergenic | 55.0% | |
| !! | CTGGGTTGGTTTGGTGGTGT+TGG | - | chr6_1:54527374-54527393 | Msa0888980:intron | 55.0% |
| CTCCCCGATGCTAATTTGGG+TGG | - | chr6_1:54527443-54527462 | Msa0888980:intron | 55.0% | |
| ! | GGGGTGCCAAAGGAGGTATA+GGG | - | chr6_1:54527592-54527611 | Msa0888980:intron | 55.0% |
| ! | GGGTGCCAAAGGAGGTATAG+GGG | - | chr6_1:54527593-54527612 | Msa0888980:intron | 55.0% |
| CCTGTTCCCATATCAGGTGC+AGG | + | chr6_1:54527714-54527733 | None:intergenic | 55.0% | |
| CCTGCACCTGATATGGGAAC+AGG | - | chr6_1:54527711-54527730 | Msa0888980:CDS | 55.0% | |
| CTTATCCCTGCTGCTCTTGG+TGG | - | chr6_1:54528905-54528924 | Msa0888980:intron | 55.0% | |
| TGACTCCACCAAGAGCAGCA+GGG | + | chr6_1:54528913-54528932 | None:intergenic | 55.0% | |
| ATGACTCCACCAAGAGCAGC+AGG | + | chr6_1:54528914-54528933 | None:intergenic | 55.0% | |
| GGCCACTGTCCTTAGAGGTT+GGG | - | chr6_1:54530408-54530427 | Msa0888980:intron | 55.0% | |
| !! | ACCCACCTGGGTTGGTTTGG+TGG | - | chr6_1:54527368-54527387 | Msa0888980:intron | 60.0% |
| CACCACCAAACCAACCCAGG+TGG | + | chr6_1:54527373-54527392 | None:intergenic | 60.0% | |
| CCTCCTTTGGCACCCCCATA+TGG | + | chr6_1:54527588-54527607 | None:intergenic | 60.0% | |
| !! | CCATATGGGGGTGCCAAAGG+AGG | - | chr6_1:54527585-54527604 | Msa0888980:intron | 60.0% |
| !! | GGGGGTGCCAAAGGAGGTAT+AGG | - | chr6_1:54527591-54527610 | Msa0888980:intron | 60.0% |
| TGCGACTGCGACCACGTTCA+AGG | + | chr6_1:54528400-54528419 | None:intergenic | 60.0% | |
| GGACAGTGGCCCTTGCTACA+CGG | + | chr6_1:54530399-54530418 | None:intergenic | 60.0% | |
| GCAAGGGCCACTGTCCTTAG+AGG | - | chr6_1:54530403-54530422 | Msa0888980:intron | 60.0% | |
| GGGCCACTGTCCTTAGAGGT+TGG | - | chr6_1:54530407-54530426 | Msa0888980:intron | 60.0% | |
| !! | ACCCACCTGGGTTGGTTTGG+TGG | - | chr6_1:54527368-54527387 | Msa0888980:intron | 60.0% |
| CACCACCAAACCAACCCAGG+TGG | + | chr6_1:54527373-54527392 | None:intergenic | 60.0% | |
| CCTCCTTTGGCACCCCCATA+TGG | + | chr6_1:54527588-54527607 | None:intergenic | 60.0% | |
| !! | CCATATGGGGGTGCCAAAGG+AGG | - | chr6_1:54527585-54527604 | Msa0888980:intron | 60.0% |
| !! | GGGGGTGCCAAAGGAGGTAT+AGG | - | chr6_1:54527591-54527610 | Msa0888980:intron | 60.0% |
| TGCGACTGCGACCACGTTCA+AGG | + | chr6_1:54528400-54528419 | None:intergenic | 60.0% | |
| GGACAGTGGCCCTTGCTACA+CGG | + | chr6_1:54530399-54530418 | None:intergenic | 60.0% | |
| GCAAGGGCCACTGTCCTTAG+AGG | - | chr6_1:54530403-54530422 | Msa0888980:intron | 60.0% | |
| GGGCCACTGTCCTTAGAGGT+TGG | - | chr6_1:54530407-54530426 | Msa0888980:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 54526573 | 54530685 | 54526573 | ID=Msa0888980;Name=Msa0888980 |
| chr6_1 | mRNA | 54526573 | 54530685 | 54526573 | ID=Msa0888980-mRNA-1;Parent=Msa0888980;Name=Msa0888980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=141|1|1|1|1|1|9|247|411 |
| chr6_1 | exon | 54526573 | 54527005 | 54526573 | ID=Msa0888980-mRNA-1:exon:10995;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54527487 | 54527573 | 54527487 | ID=Msa0888980-mRNA-1:exon:10994;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54527661 | 54527736 | 54527661 | ID=Msa0888980-mRNA-1:exon:10993;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54528319 | 54528569 | 54528319 | ID=Msa0888980-mRNA-1:exon:10992;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54529074 | 54529190 | 54529074 | ID=Msa0888980-mRNA-1:exon:10991;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54529276 | 54529350 | 54529276 | ID=Msa0888980-mRNA-1:exon:10990;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54529518 | 54529739 | 54529518 | ID=Msa0888980-mRNA-1:exon:10989;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54529963 | 54530076 | 54529963 | ID=Msa0888980-mRNA-1:exon:10988;Parent=Msa0888980-mRNA-1 |
| chr6_1 | exon | 54530437 | 54530685 | 54530437 | ID=Msa0888980-mRNA-1:exon:10987;Parent=Msa0888980-mRNA-1 |
| chr6_1 | five_prime_UTR | 54530545 | 54530685 | 54530545 | ID=Msa0888980-mRNA-1:five_prime_utr;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54530437 | 54530544 | 54530437 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54529963 | 54530076 | 54529963 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54529518 | 54529739 | 54529518 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54529276 | 54529350 | 54529276 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54529074 | 54529190 | 54529074 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54528319 | 54528569 | 54528319 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54527661 | 54527736 | 54527661 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54527487 | 54527573 | 54527487 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | CDS | 54526820 | 54527005 | 54526820 | ID=Msa0888980-mRNA-1:cds;Parent=Msa0888980-mRNA-1 |
| chr6_1 | three_prime_UTR | 54526573 | 54526819 | 54526573 | ID=Msa0888980-mRNA-1:three_prime_utr;Parent=Msa0888980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
