Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304730 | XP_013465569.1 | 94.909 | 275 | 14 | 0 | 1 | 275 | 1 | 275 | 1.20e-165 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304730 | A0A072VN82 | 94.909 | 275 | 14 | 0 | 1 | 275 | 1 | 275 | 5.72e-166 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0304730 | 0.807506 | 4.889597e-50 | -8.615850e-47 |
| Msa0029520 | Msa0304730 | -0.803088 | 4.118698e-49 | -8.615850e-47 |
| Msa0040470 | Msa0304730 | 0.810204 | 1.294667e-50 | -8.615850e-47 |
| Msa0067590 | Msa0304730 | -0.801908 | 7.210360e-49 | -8.615850e-47 |
| Msa0077370 | Msa0304730 | 0.822899 | 1.850821e-53 | -8.615850e-47 |
| Msa0081270 | Msa0304730 | 0.807417 | 5.107082e-50 | -8.615850e-47 |
| Msa0091730 | Msa0304730 | 0.821427 | 4.060671e-53 | -8.615850e-47 |
| Msa0092480 | Msa0304730 | -0.803391 | 3.565018e-49 | -8.615850e-47 |
| Msa0097570 | Msa0304730 | 0.803407 | 3.537502e-49 | -8.615850e-47 |
| Msa0113370 | Msa0304730 | -0.811849 | 5.698590e-51 | -8.615850e-47 |
| Msa0122530 | Msa0304730 | 0.833781 | 4.378674e-56 | -8.615850e-47 |
| Msa0186540 | Msa0304730 | 0.809597 | 1.749122e-50 | -8.615850e-47 |
| Msa0194920 | Msa0304730 | 0.839936 | 1.175664e-57 | -8.615850e-47 |
| Msa0204960 | Msa0304730 | 0.813840 | 2.087929e-51 | -8.615850e-47 |
| Msa0217670 | Msa0304730 | 0.814441 | 1.538566e-51 | -8.615850e-47 |
| Msa0226260 | Msa0304730 | 0.919994 | 2.240000e-87 | -8.615850e-47 |
| Msa0236920 | Msa0304730 | 0.831635 | 1.492479e-55 | -8.615850e-47 |
| Msa0256140 | Msa0304730 | 0.823506 | 1.335568e-53 | -8.615850e-47 |
| Msa0257490 | Msa0304730 | 0.802619 | 5.147650e-49 | -8.615850e-47 |
| Msa0274720 | Msa0304730 | 0.816720 | 4.780081e-52 | -8.615850e-47 |
| Msa0281050 | Msa0304730 | 0.806822 | 6.825652e-50 | -8.615850e-47 |
| Msa0304730 | Msa0315520 | 0.802947 | 4.403947e-49 | -8.615850e-47 |
| Msa0304730 | Msa0320230 | 0.809981 | 1.446221e-50 | -8.615850e-47 |
| Msa0304730 | Msa0331580 | 0.910940 | 1.067033e-82 | -8.615850e-47 |
| Msa0304730 | Msa0370580 | -0.818355 | 2.046533e-52 | -8.615850e-47 |
| Msa0304730 | Msa0380330 | 0.811417 | 7.075346e-51 | -8.615850e-47 |
| Msa0304730 | Msa0383870 | -0.821131 | 4.753269e-53 | -8.615850e-47 |
| Msa0304730 | Msa0385500 | 0.820151 | 7.980522e-53 | -8.615850e-47 |
| Msa0304730 | Msa0385740 | 0.806787 | 6.941109e-50 | -8.615850e-47 |
| Msa0304730 | Msa0388730 | 0.801299 | 9.615283e-49 | -8.615850e-47 |
| Msa0304730 | Msa0404630 | 0.811878 | 5.616131e-51 | -8.615850e-47 |
| Msa0304730 | Msa0493740 | 0.812038 | 5.183804e-51 | -8.615850e-47 |
| Msa0304730 | Msa0500610 | -0.816376 | 5.710144e-52 | -8.615850e-47 |
| Msa0304730 | Msa0527540 | 0.812025 | 5.216879e-51 | -8.615850e-47 |
| Msa0304730 | Msa0529000 | 0.829865 | 4.052907e-55 | -8.615850e-47 |
| Msa0304730 | Msa0542560 | 0.819738 | 9.920362e-53 | -8.615850e-47 |
| Msa0304730 | Msa0545050 | 0.821790 | 3.348384e-53 | -8.615850e-47 |
| Msa0304730 | Msa0549950 | 0.812879 | 3.394947e-51 | -8.615850e-47 |
| Msa0304730 | Msa0574930 | 0.805338 | 1.401160e-49 | -8.615850e-47 |
| Msa0304730 | Msa0600590 | 0.824564 | 7.539781e-54 | -8.615850e-47 |
| Msa0304730 | Msa0604290 | 0.825564 | 4.376822e-54 | -8.615850e-47 |
| Msa0304730 | Msa0626920 | 0.812579 | 3.949925e-51 | -8.615850e-47 |
| Msa0304730 | Msa0632420 | 0.804321 | 2.284749e-49 | -8.615850e-47 |
| Msa0304730 | Msa0641130 | 0.815562 | 8.676474e-52 | -8.615850e-47 |
| Msa0304730 | Msa0646020 | 0.801390 | 9.208146e-49 | -8.615850e-47 |
| Msa0304730 | Msa0646420 | 0.809408 | 1.920026e-50 | -8.615850e-47 |
| Msa0304730 | Msa0651560 | 0.811246 | 7.707006e-51 | -8.615850e-47 |
| Msa0304730 | Msa0662220 | 0.804708 | 1.897689e-49 | -8.615850e-47 |
| Msa0304730 | Msa0665530 | -0.801967 | 7.014220e-49 | -8.615850e-47 |
| Msa0304730 | Msa0694140 | 0.820036 | 8.480735e-53 | -8.615850e-47 |
| Msa0304730 | Msa0744640 | 0.847216 | 1.330370e-59 | -8.615850e-47 |
| Msa0304730 | Msa0772280 | 0.815276 | 1.004228e-51 | -8.615850e-47 |
| Msa0304730 | Msa0776560 | 0.814218 | 1.723486e-51 | -8.615850e-47 |
| Msa0304730 | Msa0828590 | 0.813778 | 2.154745e-51 | -8.615850e-47 |
| Msa0304730 | Msa0841730 | 0.847230 | 1.318606e-59 | -8.615850e-47 |
| Msa0304730 | Msa0870510 | 0.821772 | 3.380174e-53 | -8.615850e-47 |
| Msa0304730 | Msa0944020 | 0.820936 | 5.271511e-53 | -8.615850e-47 |
| Msa0304730 | Msa0946110 | 0.991836 | 8.205074e-190 | -8.615850e-47 |
| Msa0304730 | Msa0969380 | 0.811538 | 6.659258e-51 | -8.615850e-47 |
| Msa0304730 | Msa0969720 | 0.814868 | 1.237201e-51 | -8.615850e-47 |
| Msa0304730 | Msa0974710 | 0.807853 | 4.125289e-50 | -8.615850e-47 |
| Msa0304730 | Msa0982090 | -0.808807 | 2.582478e-50 | -8.615850e-47 |
| Msa0304730 | Msa0992510 | 0.839656 | 1.390610e-57 | -8.615850e-47 |
| Msa0304730 | Msa1080130 | 0.804723 | 1.883853e-49 | -8.615850e-47 |
| Msa0304730 | Msa1128270 | 0.818509 | 1.889172e-52 | -8.615850e-47 |
| Msa0304730 | Msa1128280 | 0.809463 | 1.869249e-50 | -8.615850e-47 |
| Msa0304730 | Msa1167310 | 0.830872 | 2.299594e-55 | -8.615850e-47 |
| Msa0304730 | Msa1184230 | 0.861183 | 1.227393e-63 | -8.615850e-47 |
| Msa0304730 | Msa1184690 | 0.812214 | 4.744056e-51 | -8.615850e-47 |
| Msa0304730 | Msa1190100 | -0.814837 | 1.256873e-51 | -8.615850e-47 |
| Msa0304730 | Msa1202800 | 0.803160 | 3.980844e-49 | -8.615850e-47 |
| Msa0304730 | Msa1207920 | -0.820247 | 7.585193e-53 | -8.615850e-47 |
| Msa0304730 | Msa1238600 | 0.810153 | 1.327717e-50 | -8.615850e-47 |
| Msa0304730 | Msa1255210 | 0.818871 | 1.563402e-52 | -8.615850e-47 |
| Msa0304730 | Msa1258030 | -0.824247 | 8.950857e-54 | -8.615850e-47 |
| Msa0304730 | Msa1271130 | 0.807930 | 3.972588e-50 | -8.615850e-47 |
| Msa0304730 | Msa1289050 | 0.818855 | 1.576572e-52 | -8.615850e-47 |
| Msa0304730 | Msa1289090 | 0.820819 | 5.608225e-53 | -8.615850e-47 |
| Msa0304730 | Msa1295650 | 0.811118 | 8.213151e-51 | -8.615850e-47 |
| Msa0304730 | Msa1341060 | 0.801830 | 7.483321e-49 | -8.615850e-47 |
| Msa0304730 | Msa1364350 | -0.838773 | 2.356541e-57 | -8.615850e-47 |
| Msa0304730 | Msa1376620 | 0.807334 | 5.317392e-50 | -8.615850e-47 |
| Msa0304730 | Msa1382380 | -0.809897 | 1.507439e-50 | -8.615850e-47 |
| Msa0304730 | Msa1392980 | 0.825602 | 4.286954e-54 | -8.615850e-47 |
| Msa0304730 | Msa1407760 | 0.808360 | 3.218580e-50 | -8.615850e-47 |
| Msa0304730 | Msa1412730 | 0.804663 | 1.938551e-49 | -8.615850e-47 |
| Msa0304730 | Msa1442920 | 0.801314 | 9.546600e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304730 | MtrunA17_Chr2g0333081 | 94.909 | 275 | 14 | 0 | 1 | 275 | 1 | 275 | 1.10e-169 | 470 |
| Msa0304730 | MtrunA17_Chr4g0063891 | 40.927 | 259 | 128 | 5 | 1 | 235 | 1 | 258 | 1.37e-51 | 170 |
| Msa0304730 | MtrunA17_Chr7g0262061 | 49.180 | 122 | 59 | 1 | 121 | 242 | 211 | 329 | 3.86e-34 | 126 |
| Msa0304730 | MtrunA17_Chr5g0411051 | 52.941 | 102 | 48 | 0 | 136 | 237 | 119 | 220 | 7.88e-33 | 120 |
| Msa0304730 | MtrunA17_Chr7g0262541 | 47.541 | 122 | 58 | 2 | 131 | 246 | 226 | 347 | 5.13e-31 | 118 |
| Msa0304730 | MtrunA17_Chr1g0186111 | 38.255 | 149 | 86 | 2 | 101 | 249 | 96 | 238 | 8.04e-26 | 104 |
| Msa0304730 | MtrunA17_Chr1g0186111 | 44.545 | 110 | 60 | 1 | 133 | 241 | 266 | 375 | 2.23e-21 | 92.4 |
| Msa0304730 | MtrunA17_Chr4g0003301 | 61.538 | 65 | 25 | 0 | 166 | 230 | 6 | 70 | 2.47e-24 | 93.2 |
| Msa0304730 | MtrunA17_Chr4g0003311 | 43.787 | 169 | 76 | 4 | 1 | 167 | 1 | 152 | 3.61e-19 | 82.4 |
| Msa0304730 | MtrunA17_Chr3g0104511 | 40.816 | 98 | 58 | 0 | 139 | 236 | 399 | 496 | 3.80e-19 | 86.7 |
| Msa0304730 | MtrunA17_Chr5g0436741 | 35.294 | 119 | 77 | 0 | 137 | 255 | 296 | 414 | 8.58e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304730 | AT5G20190.1 | 62.626 | 99 | 37 | 0 | 139 | 237 | 156 | 254 | 1.93e-40 | 142 |
| Msa0304730 | AT1G80130.1 | 41.111 | 270 | 115 | 7 | 1 | 235 | 1 | 261 | 1.09e-37 | 135 |
| Msa0304730 | AT4G32340.1 | 59.000 | 100 | 40 | 1 | 139 | 237 | 110 | 209 | 1.46e-35 | 127 |
| Msa0304730 | AT4G17940.1 | 58.333 | 96 | 40 | 0 | 142 | 237 | 153 | 248 | 5.92e-35 | 127 |
| Msa0304730 | AT2G29670.1 | 42.056 | 107 | 62 | 0 | 131 | 237 | 412 | 518 | 2.21e-21 | 94.0 |
| Msa0304730 | AT2G29670.2 | 42.056 | 107 | 62 | 0 | 131 | 237 | 412 | 518 | 2.21e-21 | 94.0 |
| Msa0304730 | AT1G04530.1 | 46.316 | 95 | 50 | 1 | 142 | 236 | 124 | 217 | 1.71e-20 | 89.4 |
| Msa0304730 | AT1G04530.1 | 28.571 | 126 | 68 | 3 | 136 | 239 | 185 | 310 | 8.36e-11 | 62.0 |
| Msa0304730 | AT1G07280.3 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.33e-19 | 88.6 |
| Msa0304730 | AT1G07280.1 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.33e-19 | 88.6 |
| Msa0304730 | AT1G07280.2 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.33e-19 | 88.6 |
| Msa0304730 | AT3G47080.1 | 36.735 | 98 | 62 | 0 | 139 | 236 | 400 | 497 | 6.90e-14 | 71.6 |
Find 55 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGTAAAAGAGAATTATT+TGG | 0.185235 | 2_3:-62090296 | None:intergenic |
| CTTGGACTTGCAAGTGTTCT+AGG | 0.227205 | 2_3:-62089939 | None:intergenic |
| CTCTCTATGCTGATTTAATA+TGG | 0.230159 | 2_3:+62090859 | Msa0304730:CDS |
| TTTAACAGCCCTATCAAAAT+AGG | 0.241375 | 2_3:-62090913 | None:intergenic |
| GTATGTTGAAAGAGCCATTT+TGG | 0.262466 | 2_3:+62090809 | Msa0304730:CDS |
| GGTTTGCTTCAATCATGTTT+TGG | 0.294320 | 2_3:-62090274 | None:intergenic |
| AAGTAGGTTCGTGGAGATTA+TGG | 0.302005 | 2_3:+62090774 | Msa0304730:intron |
| TAGTTTAGATAAGCAAGTTT+TGG | 0.332832 | 2_3:+62090070 | Msa0304730:CDS |
| ATCACCAGGGCTAGCCAAAA+TGG | 0.341771 | 2_3:-62090823 | None:intergenic |
| AGTAATGGGTGGTGGTGGTA+TGG | 0.351405 | 2_3:+62090136 | Msa0304730:CDS |
| AATGGTAGTGGAAGAGATTC+TGG | 0.357707 | 2_3:+62090191 | Msa0304730:CDS |
| GATTTCTCTTACCAATCATC+TGG | 0.360855 | 2_3:-62090942 | None:intergenic |
| TTCTTTCCTTCCACACTCAA+TGG | 0.370876 | 2_3:+62089881 | Msa0304730:CDS |
| GTAATGGGTGGTGGTGGTAT+GGG | 0.372856 | 2_3:+62090137 | Msa0304730:CDS |
| CAAGTAAAAGAGAATTATTT+GGG | 0.377661 | 2_3:-62090295 | None:intergenic |
| TGGTGATTGAGTTCTTGTTC+AGG | 0.381932 | 2_3:-62089912 | None:intergenic |
| CTTCATATGCAAAATTCCTA+TGG | 0.391469 | 2_3:+62091934 | Msa0304730:CDS |
| GAAAATAGTTCTCTCGTTGA+AGG | 0.392335 | 2_3:-62090041 | None:intergenic |
| GGTGGTATGGGGTGTGATGG+TGG | 0.402385 | 2_3:+62090149 | Msa0304730:CDS |
| GGTGGTGGTATGGGGTGTGA+TGG | 0.405771 | 2_3:+62090146 | Msa0304730:CDS |
| AAGTTGCAAACTTTAGTAAT+GGG | 0.406381 | 2_3:+62090122 | Msa0304730:CDS |
| AGAGATTCTGGTGGTGGAAA+TGG | 0.409069 | 2_3:+62090203 | Msa0304730:CDS |
| TGTGATGGTGGAAGTATTTG+TGG | 0.443120 | 2_3:+62090161 | Msa0304730:CDS |
| AAAGTTGCAAACTTTAGTAA+TGG | 0.445266 | 2_3:+62090121 | Msa0304730:CDS |
| AGTATTTGTGGTGGTTGTAA+TGG | 0.447043 | 2_3:+62090173 | Msa0304730:CDS |
| TCTGGTGGTGGAAATGGAAA+TGG | 0.452290 | 2_3:+62090209 | Msa0304730:CDS |
| AAAGATCAGGTGAAAGTGTA+TGG | 0.469919 | 2_3:-62092007 | None:intergenic |
| GGTGATTGAGTTCTTGTTCA+GGG | 0.477042 | 2_3:-62089911 | None:intergenic |
| TAATGGGTGGTGGTGGTATG+GGG | 0.499472 | 2_3:+62090138 | Msa0304730:CDS |
| TGTGGTGGTTGTAATGGTAG+TGG | 0.516522 | 2_3:+62090179 | Msa0304730:CDS |
| TTAAAAGTGATCCAGATGAT+TGG | 0.517931 | 2_3:+62090931 | Msa0304730:CDS |
| TTATCACATCAGCTATGTCC+TGG | 0.518059 | 2_3:+62091911 | Msa0304730:intron |
| CAATTTGAAAAGTAGGTTCG+TGG | 0.525753 | 2_3:+62090765 | Msa0304730:intron |
| CATCTTCTTCAGCGTCCCAT+AGG | 0.538742 | 2_3:-62091950 | None:intergenic |
| GGAAGGAAAGAACTTGGAAT+TGG | 0.544342 | 2_3:-62089870 | None:intergenic |
| ACTTTAGTAATGGGTGGTGG+TGG | 0.545271 | 2_3:+62090131 | Msa0304730:CDS |
| AGTGGAAGAGATTCTGGTGG+TGG | 0.546901 | 2_3:+62090197 | Msa0304730:CDS |
| AAGATTCCATTGAGTGTGGA+AGG | 0.563863 | 2_3:-62089887 | None:intergenic |
| GATAAAGCATCAGCATCACC+AGG | 0.566361 | 2_3:-62090837 | None:intergenic |
| TTCATATGCAAAATTCCTAT+GGG | 0.567504 | 2_3:+62091935 | Msa0304730:CDS |
| GTGATTGAGTTCTTGTTCAG+GGG | 0.572118 | 2_3:-62089910 | None:intergenic |
| GAGTGTGGAAGGAAAGAACT+TGG | 0.576678 | 2_3:-62089876 | None:intergenic |
| GACTTGCAAGTGTTCTAGGA+AGG | 0.580355 | 2_3:-62089935 | None:intergenic |
| GGGGAAGATTCCATTGAGTG+TGG | 0.597244 | 2_3:-62089891 | None:intergenic |
| CAAACTTTAGTAATGGGTGG+TGG | 0.599262 | 2_3:+62090128 | Msa0304730:CDS |
| AATGGATGGGAAAATAATGA+TGG | 0.600399 | 2_3:+62090227 | Msa0304730:CDS |
| TTGCAAACTTTAGTAATGGG+TGG | 0.605342 | 2_3:+62090125 | Msa0304730:CDS |
| TGGTGGAAATGGAAATGGAT+GGG | 0.611749 | 2_3:+62090214 | Msa0304730:CDS |
| TGGTGATGATTCTTAAGAAG+TGG | 0.624905 | 2_3:-62089978 | None:intergenic |
| TTGCAAGTGTTCTAGGAAGG+TGG | 0.634929 | 2_3:-62089932 | None:intergenic |
| GTGGTGGAAATGGAAATGGA+TGG | 0.643918 | 2_3:+62090213 | Msa0304730:CDS |
| GATGGTGGAAGTATTTGTGG+TGG | 0.659019 | 2_3:+62090164 | Msa0304730:CDS |
| TGGAGATTATGGTAAAGCAG+AGG | 0.689369 | 2_3:+62090785 | Msa0304730:CDS |
| ATAAAGCATCAGCATCACCA+GGG | 0.728077 | 2_3:-62090836 | None:intergenic |
| GGTAGTGGAAGAGATTCTGG+TGG | 0.752433 | 2_3:+62090194 | Msa0304730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACACAAATAAAATTATTT+AGG | - | chr2_3:62091410-62091429 | None:intergenic | 10.0% |
| !! | AATTTCATCATAATATTAAT+TGG | - | chr2_3:62091491-62091510 | None:intergenic | 10.0% |
| !! | AAAATATCAAACTTGAAATT+TGG | + | chr2_3:62090498-62090517 | Msa0304730:intron | 15.0% |
| !! | ACAATATATAAATGAAGATT+AGG | + | chr2_3:62090631-62090650 | Msa0304730:intron | 15.0% |
| !!! | TAGGTAAAATATTTTGTAAT+TGG | + | chr2_3:62090655-62090674 | Msa0304730:intron | 15.0% |
| !! | TGTATTGTGATTAAAATATA+TGG | + | chr2_3:62090718-62090737 | Msa0304730:intron | 15.0% |
| !! | TATGATGAAATTAATTAACA+AGG | + | chr2_3:62091499-62091518 | Msa0304730:intron | 15.0% |
| !! | ATGATGAAATTAATTAACAA+GGG | + | chr2_3:62091500-62091519 | Msa0304730:intron | 15.0% |
| !! | AAAAAAAATCCTACAAAAAA+CGG | + | chr2_3:62091535-62091554 | Msa0304730:intron | 15.0% |
| !! | TAATTAGATTATCTATCATT+TGG | + | chr2_3:62091656-62091675 | Msa0304730:intron | 15.0% |
| !! | AATTAGATTATCTATCATTT+GGG | + | chr2_3:62091657-62091676 | Msa0304730:intron | 15.0% |
| !! | TATAACATCAAATAAAAATC+AGG | - | chr2_3:62091862-62091881 | None:intergenic | 15.0% |
| !! | CAAGTAAAAGAGAATTATTT+GGG | - | chr2_3:62090298-62090317 | None:intergenic | 20.0% |
| !! | TTAAGTTATGTGTTGAAATA+TGG | - | chr2_3:62090466-62090485 | None:intergenic | 20.0% |
| !! | TAATGTTCAATTTGAAAAGT+AGG | + | chr2_3:62090758-62090777 | Msa0304730:intron | 20.0% |
| !! | ATAAAGTTCATAGATGAATT+AGG | - | chr2_3:62091016-62091035 | None:intergenic | 20.0% |
| !! | AGAACAAAATATGTTACAAA+AGG | - | chr2_3:62091228-62091247 | None:intergenic | 20.0% |
| !! | AAAAAAATCCTACAAAAAAC+GGG | + | chr2_3:62091536-62091555 | Msa0304730:intron | 20.0% |
| !! | TTAGTAATTAGTTGTTAGAT+TGG | - | chr2_3:62091751-62091770 | None:intergenic | 20.0% |
| !! | TTTCTTTCCAAAAAAATACA+AGG | + | chr2_3:62091824-62091843 | Msa0304730:intron | 20.0% |
| !! | TTCTTTCCAAAAAAATACAA+GGG | + | chr2_3:62091825-62091844 | Msa0304730:intron | 20.0% |
| !!! | ATTTTTGTTCTGTTTCTTCT+TGG | - | chr2_3:62090001-62090020 | None:intergenic | 25.0% |
| !! | TAGTTTAGATAAGCAAGTTT+TGG | + | chr2_3:62090070-62090089 | Msa0304730:CDS | 25.0% |
| ! | AAAGTTGCAAACTTTAGTAA+TGG | + | chr2_3:62090121-62090140 | Msa0304730:CDS | 25.0% |
| ! | AAGTTGCAAACTTTAGTAAT+GGG | + | chr2_3:62090122-62090141 | Msa0304730:CDS | 25.0% |
| ! | CCAAGTAAAAGAGAATTATT+TGG | - | chr2_3:62090299-62090318 | None:intergenic | 25.0% |
| !! | CCAAATAATTCTCTTTTACT+TGG | + | chr2_3:62090296-62090315 | Msa0304730:CDS | 25.0% |
| !!! | TTATGCTAAGTTTTTGAAAG+AGG | + | chr2_3:62090322-62090341 | Msa0304730:CDS | 25.0% |
| !! | ACGAATTAGACTTAAACTTT+TGG | - | chr2_3:62090593-62090612 | None:intergenic | 25.0% |
| ! | ATATAAATGAAGATTAGGCT+AGG | + | chr2_3:62090636-62090655 | Msa0304730:intron | 25.0% |
| ! | AGAGAAATCTTAAATCTATG+TGG | + | chr2_3:62090956-62090975 | Msa0304730:intron | 25.0% |
| ! | ATATAAACCAAATGATACAG+TGG | + | chr2_3:62091143-62091162 | Msa0304730:intron | 25.0% |
| ! | AAGTATTTCTCATGTTTATG+CGG | - | chr2_3:62091251-62091270 | None:intergenic | 25.0% |
| ! | CATAAACATGAGAAATACTT+GGG | + | chr2_3:62091251-62091270 | Msa0304730:intron | 25.0% |
| ! | ATAAACATGAGAAATACTTG+GGG | + | chr2_3:62091252-62091271 | Msa0304730:intron | 25.0% |
| ! | AAACACAAATGTAAAAGGTT+TGG | + | chr2_3:62091277-62091296 | Msa0304730:intron | 25.0% |
| ! | TGTGCAAATTTGTATATGTA+GGG | - | chr2_3:62091456-62091475 | None:intergenic | 25.0% |
| ! | ATGTGCAAATTTGTATATGT+AGG | - | chr2_3:62091457-62091476 | None:intergenic | 25.0% |
| !!! | AACAAACCCTTGTATTTTTT+TGG | - | chr2_3:62091834-62091853 | None:intergenic | 25.0% |
| ! | TTCATATGCAAAATTCCTAT+GGG | + | chr2_3:62091935-62091954 | Msa0304730:CDS | 25.0% |
| AATGGATGGGAAAATAATGA+TGG | + | chr2_3:62090227-62090246 | Msa0304730:CDS | 30.0% | |
| !! | CTCTCTATGCTGATTTAATA+TGG | + | chr2_3:62090859-62090878 | Msa0304730:CDS | 30.0% |
| TTTAACAGCCCTATCAAAAT+AGG | - | chr2_3:62090916-62090935 | None:intergenic | 30.0% | |
| TTAAAAGTGATCCAGATGAT+TGG | + | chr2_3:62090931-62090950 | Msa0304730:CDS | 30.0% | |
| GAGAATGTATGTATACATAG+AGG | - | chr2_3:62090994-62091013 | None:intergenic | 30.0% | |
| GCATAAACATGAGAAATACT+TGG | + | chr2_3:62091250-62091269 | Msa0304730:intron | 30.0% | |
| GGGATAAACACAAATGTAAA+AGG | + | chr2_3:62091272-62091291 | Msa0304730:intron | 30.0% | |
| TAATTAACAAGGGAACAACA+AGG | + | chr2_3:62091510-62091529 | Msa0304730:intron | 30.0% | |
| AATTAACAAGGGAACAACAA+GGG | + | chr2_3:62091511-62091530 | Msa0304730:intron | 30.0% | |
| !!! | TATATAGACCCGTTTTTTGT+AGG | - | chr2_3:62091547-62091566 | None:intergenic | 30.0% |
| ! | GATTATCTATCATTTGGGAT+TGG | + | chr2_3:62091662-62091681 | Msa0304730:intron | 30.0% |
| TAGCTCAACTAATTTACGAT+AGG | + | chr2_3:62091686-62091705 | Msa0304730:intron | 30.0% | |
| AGCTCAACTAATTTACGATA+GGG | + | chr2_3:62091687-62091706 | Msa0304730:intron | 30.0% | |
| !!! | AGACGTTTTGCTTTATTTTC+TGG | + | chr2_3:62091795-62091814 | Msa0304730:intron | 30.0% |
| CTTCATATGCAAAATTCCTA+TGG | + | chr2_3:62091934-62091953 | Msa0304730:CDS | 30.0% | |
| !!! | GGTGCAGATTTTTTATGTCT+TGG | - | chr2_3:62089960-62089979 | None:intergenic | 35.0% |
| ! | TGGTGATGATTCTTAAGAAG+TGG | - | chr2_3:62089981-62090000 | None:intergenic | 35.0% |
| GAAAATAGTTCTCTCGTTGA+AGG | - | chr2_3:62090044-62090063 | None:intergenic | 35.0% | |
| !!! | CAAGTTTTGGATCATGAAGA+AGG | + | chr2_3:62090083-62090102 | Msa0304730:CDS | 35.0% |
| GAAGAAGGTGGTAAAAAAGT+AGG | + | chr2_3:62090098-62090117 | Msa0304730:CDS | 35.0% | |
| ! | TTGCAAACTTTAGTAATGGG+TGG | + | chr2_3:62090125-62090144 | Msa0304730:CDS | 35.0% |
| AGTATTTGTGGTGGTTGTAA+TGG | + | chr2_3:62090173-62090192 | Msa0304730:CDS | 35.0% | |
| !! | GGTTTGCTTCAATCATGTTT+TGG | - | chr2_3:62090277-62090296 | None:intergenic | 35.0% |
| ATAACATGATCAAGCTCAAG+TGG | - | chr2_3:62090385-62090404 | None:intergenic | 35.0% | |
| GAATTCATATTGCATGCAGT+CGG | - | chr2_3:62090558-62090577 | None:intergenic | 35.0% | |
| CAATTTGAAAAGTAGGTTCG+TGG | + | chr2_3:62090765-62090784 | Msa0304730:intron | 35.0% | |
| ! | GTATGTTGAAAGAGCCATTT+TGG | + | chr2_3:62090809-62090828 | Msa0304730:CDS | 35.0% |
| !!! | AGCTGAAGCCTATTTTGATA+GGG | + | chr2_3:62090905-62090924 | Msa0304730:CDS | 35.0% |
| GATTTCTCTTACCAATCATC+TGG | - | chr2_3:62090945-62090964 | None:intergenic | 35.0% | |
| TAGAGACACTATATGTGACA+TGG | + | chr2_3:62091052-62091071 | Msa0304730:intron | 35.0% | |
| TCTTGATCCACTGTATCATT+TGG | - | chr2_3:62091153-62091172 | None:intergenic | 35.0% | |
| TACGATAGGGTCAAAAAAGT+TGG | + | chr2_3:62091700-62091719 | Msa0304730:intron | 35.0% | |
| !! | GGCTCTTATCAGTTTTATGT+TGG | - | chr2_3:62091989-62092008 | None:intergenic | 35.0% |
| ! | AAAGATCAGGTGAAAGTGTA+TGG | - | chr2_3:62092010-62092029 | None:intergenic | 35.0% |
| ! | CTTTCACCTGATCTTTTTCT+AGG | + | chr2_3:62092014-62092033 | Msa0304730:CDS | 35.0% |
| TTAGCTCCTAGAAAAAGATC+AGG | - | chr2_3:62092023-62092042 | None:intergenic | 35.0% | |
| !! | GATCTTTTTCTAGGAGCTAA+TGG | + | chr2_3:62092023-62092042 | Msa0304730:CDS | 35.0% |
| GGAAGGAAAGAACTTGGAAT+TGG | - | chr2_3:62089873-62089892 | None:intergenic | 40.0% | |
| TTCTTTCCTTCCACACTCAA+TGG | + | chr2_3:62089881-62089900 | Msa0304730:CDS | 40.0% | |
| AAGATTCCATTGAGTGTGGA+AGG | - | chr2_3:62089890-62089909 | None:intergenic | 40.0% | |
| GTGATTGAGTTCTTGTTCAG+GGG | - | chr2_3:62089913-62089932 | None:intergenic | 40.0% | |
| GGTGATTGAGTTCTTGTTCA+GGG | - | chr2_3:62089914-62089933 | None:intergenic | 40.0% | |
| TGGTGATTGAGTTCTTGTTC+AGG | - | chr2_3:62089915-62089934 | None:intergenic | 40.0% | |
| !! | GTTTTGGATCATGAAGAAGG+TGG | + | chr2_3:62090086-62090105 | Msa0304730:CDS | 40.0% |
| !! | CAAACTTTAGTAATGGGTGG+TGG | + | chr2_3:62090128-62090147 | Msa0304730:CDS | 40.0% |
| !! | TGTGATGGTGGAAGTATTTG+TGG | + | chr2_3:62090161-62090180 | Msa0304730:CDS | 40.0% |
| !! | AATGGTAGTGGAAGAGATTC+TGG | + | chr2_3:62090191-62090210 | Msa0304730:CDS | 40.0% |
| TGGTGGAAATGGAAATGGAT+GGG | + | chr2_3:62090214-62090233 | Msa0304730:CDS | 40.0% | |
| ATAAATTTCCCGCATTCACG+CGG | + | chr2_3:62090403-62090422 | Msa0304730:intron | 40.0% | |
| ! | GTCGGTACATTGATGATTGT+TGG | - | chr2_3:62090540-62090559 | None:intergenic | 40.0% |
| AAGTAGGTTCGTGGAGATTA+TGG | + | chr2_3:62090774-62090793 | Msa0304730:intron | 40.0% | |
| TGGAGATTATGGTAAAGCAG+AGG | + | chr2_3:62090785-62090804 | Msa0304730:CDS | 40.0% | |
| ! | ATAAAGCATCAGCATCACCA+GGG | - | chr2_3:62090839-62090858 | None:intergenic | 40.0% |
| !!! | GAGCTGAAGCCTATTTTGAT+AGG | + | chr2_3:62090904-62090923 | Msa0304730:CDS | 40.0% |
| !!! | CCTGATAGCTGGTCTTTTAA+GGG | - | chr2_3:62091597-62091616 | None:intergenic | 40.0% |
| !!! | TCCTGATAGCTGGTCTTTTA+AGG | - | chr2_3:62091598-62091617 | None:intergenic | 40.0% |
| GATAGGGTCAAAAAAGTTGG+AGG | + | chr2_3:62091703-62091722 | Msa0304730:intron | 40.0% | |
| TTATCACATCAGCTATGTCC+TGG | + | chr2_3:62091911-62091930 | Msa0304730:intron | 40.0% | |
| ! | GGAATTTTGCATATGAAGCC+AGG | - | chr2_3:62091932-62091951 | None:intergenic | 40.0% |
| GAGTGTGGAAGGAAAGAACT+TGG | - | chr2_3:62089879-62089898 | None:intergenic | 45.0% | |
| !! | TTGCAAGTGTTCTAGGAAGG+TGG | - | chr2_3:62089935-62089954 | None:intergenic | 45.0% |
| !! | GACTTGCAAGTGTTCTAGGA+AGG | - | chr2_3:62089938-62089957 | None:intergenic | 45.0% |
| CTTGGACTTGCAAGTGTTCT+AGG | - | chr2_3:62089942-62089961 | None:intergenic | 45.0% | |
| !! | ACTTTAGTAATGGGTGGTGG+TGG | + | chr2_3:62090131-62090150 | Msa0304730:CDS | 45.0% |
| !! | GATGGTGGAAGTATTTGTGG+TGG | + | chr2_3:62090164-62090183 | Msa0304730:CDS | 45.0% |
| TGTGGTGGTTGTAATGGTAG+TGG | + | chr2_3:62090179-62090198 | Msa0304730:CDS | 45.0% | |
| !! | AGAGATTCTGGTGGTGGAAA+TGG | + | chr2_3:62090203-62090222 | Msa0304730:CDS | 45.0% |
| !! | TCTGGTGGTGGAAATGGAAA+TGG | + | chr2_3:62090209-62090228 | Msa0304730:CDS | 45.0% |
| ! | GTGGTGGAAATGGAAATGGA+TGG | + | chr2_3:62090213-62090232 | Msa0304730:CDS | 45.0% |
| AGGTGGTTGTTGATCGAGAT+AGG | + | chr2_3:62090435-62090454 | Msa0304730:intron | 45.0% | |
| ! | GATAAAGCATCAGCATCACC+AGG | - | chr2_3:62090840-62090859 | None:intergenic | 45.0% |
| !!! | GATAGCTGGTCTTTTAAGGG+TGG | - | chr2_3:62091594-62091613 | None:intergenic | 45.0% |
| CCCTTAAAAGACCAGCTATC+AGG | + | chr2_3:62091594-62091613 | Msa0304730:intron | 45.0% | |
| AGACCAGCTATCAGGAACAA+AGG | + | chr2_3:62091602-62091621 | Msa0304730:intron | 45.0% | |
| CTTCCTTTGTTCCTGATAGC+TGG | - | chr2_3:62091608-62091627 | None:intergenic | 45.0% | |
| ! | AGTTGTTAGATTGGTCCGCA+GGG | - | chr2_3:62091742-62091761 | None:intergenic | 45.0% |
| ! | TAGTTGTTAGATTGGTCCGC+AGG | - | chr2_3:62091743-62091762 | None:intergenic | 45.0% |
| !!! | TTTTTATTTTTAAGATAAAT+TGG | + | chr2_3:62091318-62091337 | Msa0304730:intron | 5.0% |
| !!! | TTATTTAATTTTTTTTATTG+TGG | + | chr2_3:62091376-62091395 | Msa0304730:intron | 5.0% |
| GGGGAAGATTCCATTGAGTG+TGG | - | chr2_3:62089894-62089913 | None:intergenic | 50.0% | |
| !! | AGTAATGGGTGGTGGTGGTA+TGG | + | chr2_3:62090136-62090155 | Msa0304730:CDS | 50.0% |
| !! | GTAATGGGTGGTGGTGGTAT+GGG | + | chr2_3:62090137-62090156 | Msa0304730:CDS | 50.0% |
| !! | TAATGGGTGGTGGTGGTATG+GGG | + | chr2_3:62090138-62090157 | Msa0304730:CDS | 50.0% |
| !! | GGTAGTGGAAGAGATTCTGG+TGG | + | chr2_3:62090194-62090213 | Msa0304730:CDS | 50.0% |
| AGTGGAAGAGATTCTGGTGG+TGG | + | chr2_3:62090197-62090216 | Msa0304730:CDS | 50.0% | |
| ATGTGCTAACCGCGTGAATG+CGG | - | chr2_3:62090415-62090434 | None:intergenic | 50.0% | |
| CATTCACGCGGTTAGCACAT+AGG | + | chr2_3:62090415-62090434 | Msa0304730:intron | 50.0% | |
| !! | ATCACCAGGGCTAGCCAAAA+TGG | - | chr2_3:62090826-62090845 | None:intergenic | 50.0% |
| TGGTCCGCAGGGTTTGAATT+CGG | - | chr2_3:62091731-62091750 | None:intergenic | 50.0% | |
| CATCTTCTTCAGCGTCCCAT+AGG | - | chr2_3:62091953-62091972 | None:intergenic | 50.0% | |
| TGTGCTAACCGCGTGAATGC+GGG | - | chr2_3:62090414-62090433 | None:intergenic | 55.0% | |
| TCACGCGGTTAGCACATAGG+TGG | + | chr2_3:62090418-62090437 | Msa0304730:intron | 55.0% | |
| !!! | AGAGCCATTTTGGCTAGCCC+TGG | + | chr2_3:62090819-62090838 | Msa0304730:CDS | 55.0% |
| GGACCCGAATTCAAACCCTG+CGG | + | chr2_3:62091724-62091743 | Msa0304730:intron | 55.0% | |
| GGTCCGCAGGGTTTGAATTC+GGG | - | chr2_3:62091730-62091749 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTATGGGGTGTGA+TGG | + | chr2_3:62090146-62090165 | Msa0304730:CDS | 60.0% |
| GGTGGTATGGGGTGTGATGG+TGG | + | chr2_3:62090149-62090168 | Msa0304730:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 62089846 | 62092079 | 62089846 | ID=Msa0304730;Name=Msa0304730 |
| chr2_3 | mRNA | 62089846 | 62092079 | 62089846 | ID=Msa0304730-mRNA-1;Parent=Msa0304730;Name=Msa0304730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|275 |
| chr2_3 | exon | 62089846 | 62090343 | 62089846 | ID=Msa0304730-mRNA-1:exon:20660;Parent=Msa0304730-mRNA-1 |
| chr2_3 | exon | 62090780 | 62090952 | 62090780 | ID=Msa0304730-mRNA-1:exon:20661;Parent=Msa0304730-mRNA-1 |
| chr2_3 | exon | 62091923 | 62092079 | 62091923 | ID=Msa0304730-mRNA-1:exon:20662;Parent=Msa0304730-mRNA-1 |
| chr2_3 | CDS | 62089846 | 62090343 | 62089846 | ID=Msa0304730-mRNA-1:cds;Parent=Msa0304730-mRNA-1 |
| chr2_3 | CDS | 62090780 | 62090952 | 62090780 | ID=Msa0304730-mRNA-1:cds;Parent=Msa0304730-mRNA-1 |
| chr2_3 | CDS | 62091923 | 62092079 | 62091923 | ID=Msa0304730-mRNA-1:cds;Parent=Msa0304730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
