Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377360 | KEH33906.1 | 63.636 | 231 | 40 | 4 | 189 | 376 | 1 | 230 | 3.90e-83 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377360 | A0A072UWY0 | 63.636 | 231 | 40 | 4 | 189 | 376 | 1 | 230 | 1.86e-83 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1377360 | Msa1408240 | 0.818934 | 1.512444e-52 | -8.615850e-47 |
| Msa0796580 | Msa1377360 | 0.822378 | 2.446666e-53 | -8.615850e-47 |
| Msa0126730 | Msa1377360 | 0.811219 | 7.811413e-51 | -8.615850e-47 |
| Msa0126750 | Msa1377360 | 0.809240 | 2.086157e-50 | -8.615850e-47 |
| Msa0924920 | Msa1377360 | 0.826448 | 2.698575e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377360 | MtrunA17_Chr3g0099851 | 62.281 | 228 | 42 | 4 | 189 | 373 | 1 | 227 | 2.33e-82 | 253 |
| Msa1377360 | MtrunA17_Chr3g0111481 | 93.939 | 165 | 10 | 0 | 1 | 165 | 1 | 165 | 9.74e-63 | 198 |
| Msa1377360 | MtrunA17_Chr3g0109971 | 86.842 | 38 | 5 | 0 | 335 | 372 | 83 | 120 | 2.99e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377360 | AT1G02410.2 | 44.776 | 134 | 32 | 3 | 280 | 372 | 78 | 210 | 3.23e-21 | 93.2 |
| Msa1377360 | AT1G02410.1 | 44.776 | 134 | 32 | 3 | 280 | 372 | 78 | 210 | 3.23e-21 | 93.2 |
| Msa1377360 | AT1G02410.3 | 44.776 | 134 | 32 | 3 | 280 | 372 | 78 | 210 | 3.23e-21 | 93.2 |
Find 114 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAAATATCTGGAAAATT+TGG | 0.136901 | tig0019900:+95422 | None:intergenic |
| TGCAGTGAATTTCCTGGTTT+TGG | 0.205980 | tig0019900:-99431 | Msa1377360:CDS |
| CTTCTTTGGAGATGTTATTA+TGG | 0.220499 | tig0019900:+99777 | None:intergenic |
| TGCGAAATTCCTTGGAATTC+AGG | 0.225342 | tig0019900:-95962 | Msa1377360:intron |
| TCAGTAGTCGGTACCTTCTT+AGG | 0.246612 | tig0019900:+94398 | None:intergenic |
| GTAAAATATCTGGAAAATTT+GGG | 0.253179 | tig0019900:+95423 | None:intergenic |
| GGAGGAGGAGGAAGAGGAGG+AGG | 0.266847 | tig0019900:+99586 | None:intergenic |
| GGAGGCGGTGGAGGCGGAGG+TGG | 0.286255 | tig0019900:+99661 | None:intergenic |
| GGAGGTGGTGGTGGCGGTGG+TGG | 0.293859 | tig0019900:+99622 | None:intergenic |
| GGCGGTGGAGGCGGAGGTGG+AGG | 0.294434 | tig0019900:+99664 | None:intergenic |
| CACTTGATTTCGGTGTCTTC+CGG | 0.294850 | tig0019900:+99727 | None:intergenic |
| AAGCTATAACTTGGTCCTTC+AGG | 0.299718 | tig0019900:+95709 | None:intergenic |
| ACCGGATAGTCTAACTTCTT+TGG | 0.305997 | tig0019900:+99763 | None:intergenic |
| TAATATATCCAATATGGTTT+AGG | 0.315770 | tig0019900:+99475 | None:intergenic |
| GGTGGAGGTGGTGGTGGCGG+TGG | 0.321394 | tig0019900:+99619 | None:intergenic |
| TACTTGACAGGCTTGCTCTT+TGG | 0.331806 | tig0019900:-95475 | Msa1377360:CDS |
| GGCTTGCTCTTTGGAATGGT+TGG | 0.346568 | tig0019900:-95466 | Msa1377360:CDS |
| CTGAAATGCGGTAACATTGC+TGG | 0.351469 | tig0019900:+95599 | None:intergenic |
| CAAGGTGGTGGAGGTGGTGG+TGG | 0.352117 | tig0019900:+99613 | None:intergenic |
| AGGAATTTCGCAAAGCTCTA+AGG | 0.356354 | tig0019900:+95973 | None:intergenic |
| CTTCTCCAACTCACAATTTG+AGG | 0.360350 | tig0019900:-99864 | Msa1377360:CDS |
| CCTCATATAGGTAAAATATC+TGG | 0.361131 | tig0019900:+95413 | None:intergenic |
| AAATACAAGGGCACTTTCTC+CGG | 0.361329 | tig0019900:+94481 | None:intergenic |
| GGGCACTTGGGAGGAGGAGG+AGG | 0.365548 | tig0019900:+99571 | None:intergenic |
| AAGTAGTGCAGTGAATTTCC+TGG | 0.370432 | tig0019900:-99437 | Msa1377360:CDS |
| CACTTGGGAGGAGGAGGAGG+AGG | 0.372352 | tig0019900:+99574 | None:intergenic |
| GGTGGTGGAGGTGGTGGTGG+CGG | 0.373537 | tig0019900:+99616 | None:intergenic |
| ACATGATCCACACTTGATTT+CGG | 0.376575 | tig0019900:+99717 | None:intergenic |
| GGCGGACAAGGTGGTGGAGG+TGG | 0.377623 | tig0019900:+99607 | None:intergenic |
| ACTGATTTCCCTACAATAAC+AGG | 0.382288 | tig0019900:+96050 | None:intergenic |
| GGTGGTGGCGGTGGTGGTGT+TGG | 0.383001 | tig0019900:+99628 | None:intergenic |
| TATGTCGCAACACCGGTTAT+CGG | 0.390222 | tig0019900:+94431 | None:intergenic |
| GGACAAGGTGGTGGAGGTGG+TGG | 0.395483 | tig0019900:+99610 | None:intergenic |
| GGAAGGCTGTGTTCCATGCC+TGG | 0.399320 | tig0019900:-95556 | Msa1377360:CDS |
| GAGTAATAATATATCCAATA+TGG | 0.402251 | tig0019900:+99469 | None:intergenic |
| GGAGGAGGAAGAGGAGGAGG+CGG | 0.402509 | tig0019900:+99589 | None:intergenic |
| CTTGGTGGTGGCGGGGATGA+TGG | 0.408321 | tig0019900:+99526 | None:intergenic |
| TAGAGCTTTGCGAAATTCCT+TGG | 0.408849 | tig0019900:-95970 | Msa1377360:CDS |
| ACTGAATGTCCTGTTATTGT+AGG | 0.409282 | tig0019900:-96059 | Msa1377360:CDS |
| GGAGGCGGACAAGGTGGTGG+AGG | 0.415601 | tig0019900:+99604 | None:intergenic |
| CACATACCTCACGCATTCTT+CGG | 0.419097 | tig0019900:+95374 | None:intergenic |
| CAAGGAGGCGGTGGAGGCGG+AGG | 0.420382 | tig0019900:+99658 | None:intergenic |
| GGTTGACAAGGAGGCGGTGG+AGG | 0.421853 | tig0019900:+99652 | None:intergenic |
| GGAGGAGGCGGACAAGGTGG+TGG | 0.427830 | tig0019900:+99601 | None:intergenic |
| TGACAAGGAGGCGGTGGAGG+CGG | 0.428589 | tig0019900:+99655 | None:intergenic |
| AATAAACAATTTCCTCATAT+AGG | 0.432935 | tig0019900:+95401 | None:intergenic |
| GGAAGAGGAGGAGGCGGACA+AGG | 0.437158 | tig0019900:+99595 | None:intergenic |
| TCCAAAGAAGTTAGACTATC+CGG | 0.437941 | tig0019900:-99764 | Msa1377360:CDS |
| TTCGTATATGTGCCAGTGCC+AGG | 0.440781 | tig0019900:-99502 | Msa1377360:CDS |
| GGTGGCGGTGGTGGTGTTGG+TGG | 0.443214 | tig0019900:+99631 | None:intergenic |
| GAGGCGGAGGTGGAGGAGAT+TGG | 0.445974 | tig0019900:+99671 | None:intergenic |
| ATACGAATCTTGGTGGTGGC+GGG | 0.454347 | tig0019900:+99518 | None:intergenic |
| AAAAGTTCTACTCCGATAAC+CGG | 0.458156 | tig0019900:-94443 | Msa1377360:CDS |
| ATTTCGGTGTCTTCCGGTGG+CGG | 0.458343 | tig0019900:+99733 | None:intergenic |
| TGAGGGCACTTGGGAGGAGG+AGG | 0.459814 | tig0019900:+99568 | None:intergenic |
| GACAGGCTTGCTCTTTGGAA+TGG | 0.461865 | tig0019900:-95470 | Msa1377360:CDS |
| AGCTTAACTAATCCTAGTAC+TGG | 0.462677 | tig0019900:-95691 | Msa1377360:CDS |
| TCACAATTTGAGGATTCAAA+AGG | 0.473162 | tig0019900:-99854 | Msa1377360:CDS |
| GAATACTCTATATTGCATAA+TGG | 0.476101 | tig0019900:-94374 | Msa1377360:CDS |
| AATACAAGGGCACTTTCTCC+GGG | 0.484619 | tig0019900:+94482 | None:intergenic |
| AAGATGCTTATTTACTTGAC+AGG | 0.484712 | tig0019900:-95487 | Msa1377360:CDS |
| ACTGGCACATATACGAATCT+TGG | 0.486748 | tig0019900:+99508 | None:intergenic |
| TCCGGTGGTTGTTCCGCCAC+CGG | 0.497815 | tig0019900:-99746 | Msa1377360:CDS |
| TTACGCTGTAATCCAGTACT+AGG | 0.501451 | tig0019900:+95679 | None:intergenic |
| TTTCTGCGGTATAAAATACA+AGG | 0.503842 | tig0019900:+94468 | None:intergenic |
| TATACGAATCTTGGTGGTGG+CGG | 0.506221 | tig0019900:+99517 | None:intergenic |
| ACGTTTGTCAAGGTTTAAGC+AGG | 0.509309 | tig0019900:-95641 | Msa1377360:CDS |
| GAAATCAGTGTTGCTAATCA+TGG | 0.516299 | tig0019900:-96036 | Msa1377360:CDS |
| TCCGGTGGCGGAACAACCAC+CGG | 0.523540 | tig0019900:+99745 | None:intergenic |
| TGAATCCTCAAATTGTGAGT+TGG | 0.525279 | tig0019900:+99859 | None:intergenic |
| CAATATGGTTTAGGTTGACC+TGG | 0.525698 | tig0019900:+99484 | None:intergenic |
| CTGAATGTCCTGTTATTGTA+GGG | 0.528125 | tig0019900:-96058 | Msa1377360:CDS |
| GCCTTTGCTTCACAGAATGT+TGG | 0.528566 | tig0019900:-95577 | Msa1377360:CDS |
| GGTGGTTGACAAGGAGGCGG+TGG | 0.530339 | tig0019900:+99649 | None:intergenic |
| CAGGTCAACCTAAACCATAT+TGG | 0.530467 | tig0019900:-99483 | Msa1377360:CDS |
| GGTTTAGGTTGACCTGGCAC+TGG | 0.534190 | tig0019900:+99490 | None:intergenic |
| CTTATAAAACACGTTTGTCA+AGG | 0.535810 | tig0019900:-95651 | Msa1377360:CDS |
| TATGGTTTCTTCAGTTGAAG+AGG | 0.537455 | tig0019900:+99795 | None:intergenic |
| GGTGGTGTTGGTGGTTGACA+AGG | 0.541980 | tig0019900:+99640 | None:intergenic |
| CAGTGTTGCTAATCATGGTA+TGG | 0.545076 | tig0019900:-96031 | Msa1377360:CDS |
| GGCGGGGATGATGGTAGCAA+GGG | 0.545256 | tig0019900:+99535 | None:intergenic |
| GGATTAGTTAAGCTATAACT+TGG | 0.546457 | tig0019900:+95700 | None:intergenic |
| GGCACATATACGAATCTTGG+TGG | 0.548817 | tig0019900:+99511 | None:intergenic |
| TACGAATCTTGGTGGTGGCG+GGG | 0.550171 | tig0019900:+99519 | None:intergenic |
| ATATAATGTCACTCCTAAGA+AGG | 0.551230 | tig0019900:-94411 | Msa1377360:CDS |
| TCCAACATTCTGTGAAGCAA+AGG | 0.554680 | tig0019900:+95576 | None:intergenic |
| TGGCGGGGATGATGGTAGCA+AGG | 0.555933 | tig0019900:+99534 | None:intergenic |
| TTGCTTCACAGAATGTTGGA+AGG | 0.559019 | tig0019900:-95573 | Msa1377360:CDS |
| TGGTATGGTCTAGTATAAGT+AGG | 0.563551 | tig0019900:-96016 | Msa1377360:CDS |
| TTTCGCAAAGCTCTAAGGTA+TGG | 0.565621 | tig0019900:+95978 | None:intergenic |
| TACCAGGTTAGGGTGAAGCC+CGG | 0.567918 | tig0019900:-94500 | Msa1377360:intron |
| GATGAGAAGTGTCGAAAACC+AGG | 0.570320 | tig0019900:+95538 | None:intergenic |
| CTCCTCCTAAAGCCAAAACC+AGG | 0.576971 | tig0019900:+99419 | None:intergenic |
| GGTGTTGGTGGTTGACAAGG+AGG | 0.577220 | tig0019900:+99643 | None:intergenic |
| TCACCACATGTTTGTCCACA+AGG | 0.582995 | tig0019900:+99694 | None:intergenic |
| AGAGGAGGAGGCGGACAAGG+TGG | 0.587126 | tig0019900:+99598 | None:intergenic |
| ATAGAGTATTCTTCAGTAGT+CGG | 0.587526 | tig0019900:+94386 | None:intergenic |
| GGCCACTCTATTATTCCTGA+AGG | 0.591450 | tig0019900:-95724 | Msa1377360:CDS |
| ACATATACGAATCTTGGTGG+TGG | 0.594151 | tig0019900:+99514 | None:intergenic |
| TAAAATATCTGGAAAATTTG+GGG | 0.600133 | tig0019900:+95424 | None:intergenic |
| GCGGGGATGATGGTAGCAAG+GGG | 0.602023 | tig0019900:+99536 | None:intergenic |
| TTGATTTCGGTGTCTTCCGG+TGG | 0.602941 | tig0019900:+99730 | None:intergenic |
| ATCAAATTACCTGAATTCCA+AGG | 0.603701 | tig0019900:+95953 | None:intergenic |
| GTTGGTGGTTGACAAGGAGG+CGG | 0.605298 | tig0019900:+99646 | None:intergenic |
| GAAGTGTCGAAAACCAGGCA+TGG | 0.611980 | tig0019900:+95543 | None:intergenic |
| GACATTATATGTCGCAACAC+CGG | 0.613799 | tig0019900:+94424 | None:intergenic |
| AGGAGGACTCTCAATTGCAA+CGG | 0.621978 | tig0019900:-99401 | Msa1377360:intron |
| GTCCTTCAGGAATAATAGAG+TGG | 0.645119 | tig0019900:+95722 | None:intergenic |
| TTCTGCGGTATAAAATACAA+GGG | 0.649917 | tig0019900:+94469 | None:intergenic |
| GAAGACACCGAAATCAAGTG+TGG | 0.674612 | tig0019900:-99724 | Msa1377360:CDS |
| AAGTGTGGATCATGTCCTTG+TGG | 0.677197 | tig0019900:-99709 | Msa1377360:CDS |
| GTGAAGCAAAGGCTGAAATG+CGG | 0.695507 | tig0019900:+95587 | None:intergenic |
| AAAGAAGTTAGACTATCCGG+TGG | 0.719744 | tig0019900:-99761 | Msa1377360:CDS |
| TGTCCTTGTGGACAAACATG+TGG | 0.726872 | tig0019900:-99697 | Msa1377360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTAATTTTAGCATT+AGG | + | tig0019900:98015-98034 | None:intergenic | 10.0% |
| !!! | AAAGCTAAAAAAAATATTTT+TGG | + | tig0019900:99215-99234 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0019900:95420-95439 | Msa1377360:CDS | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0019900:95420-95439 | Msa1377360:CDS | 100.0% |
| !! | TAGTAAAAAAATTGTTACTA+AGG | + | tig0019900:95045-95064 | None:intergenic | 15.0% |
| !!! | CAGATATATTTATTTTGTAA+AGG | + | tig0019900:95124-95143 | None:intergenic | 15.0% |
| !! | ATAAGATGGAATATAAATAA+AGG | - | tig0019900:95571-95590 | Msa1377360:CDS | 15.0% |
| !!! | ACAAGATTTTGTATTATTTT+AGG | + | tig0019900:96020-96039 | None:intergenic | 15.0% |
| !! | TAAAATAATACAAAATCTTG+TGG | - | tig0019900:96019-96038 | Msa1377360:CDS | 15.0% |
| !! | CGAATTTATAAATAATTTAG+TGG | + | tig0019900:96335-96354 | None:intergenic | 15.0% |
| !! | TCCTTTCAAAAAAAAATATT+CGG | - | tig0019900:96386-96405 | Msa1377360:intron | 15.0% |
| !!! | AAAAATCTAACAATTTTGTT+TGG | - | tig0019900:96427-96446 | Msa1377360:intron | 15.0% |
| !!! | AAAATCTAACAATTTTGTTT+GGG | - | tig0019900:96428-96447 | Msa1377360:intron | 15.0% |
| !! | GTTAAAAAAAAATCTTTGAT+GGG | + | tig0019900:96562-96581 | None:intergenic | 15.0% |
| !! | TGTTAAAAAAAAATCTTTGA+TGG | + | tig0019900:96563-96582 | None:intergenic | 15.0% |
| !! | TATACAAGAATGTAAAATAA+TGG | - | tig0019900:96880-96899 | Msa1377360:intron | 15.0% |
| !! | ATTAATCTATATCTTTCTTA+CGG | - | tig0019900:97008-97027 | Msa1377360:intron | 15.0% |
| !! | TCAAAAGAAAAATATAAGAA+CGG | + | tig0019900:97276-97295 | None:intergenic | 15.0% |
| !!! | TTATATTTTTCTTTTGATGT+TGG | - | tig0019900:97279-97298 | Msa1377360:intron | 15.0% |
| !! | AATAGATTTCCAAAATTATA+AGG | - | tig0019900:97473-97492 | Msa1377360:intron | 15.0% |
| !!! | CATAAAATTCCTTATAATTT+TGG | + | tig0019900:97485-97504 | None:intergenic | 15.0% |
| !!! | CAAAATTATAAGGAATTTTA+TGG | - | tig0019900:97483-97502 | Msa1377360:intron | 15.0% |
| !! | TAGTATGCTATTATATTATT+CGG | + | tig0019900:97775-97794 | None:intergenic | 15.0% |
| !!! | GTTTGTTTTTTAAAAAAGTT+CGG | - | tig0019900:97800-97819 | Msa1377360:intron | 15.0% |
| !!! | TTTGTTTTTTAAAAAAGTTC+GGG | - | tig0019900:97801-97820 | Msa1377360:intron | 15.0% |
| !! | CAATATATGTAAAGTTTATA+GGG | + | tig0019900:98059-98078 | None:intergenic | 15.0% |
| !! | ACAATATATGTAAAGTTTAT+AGG | + | tig0019900:98060-98079 | None:intergenic | 15.0% |
| !! | TACAAATTACAAATATACTT+TGG | + | tig0019900:98377-98396 | None:intergenic | 15.0% |
| !!! | TATATTTGTAATTTGTATTG+AGG | - | tig0019900:98380-98399 | Msa1377360:intron | 15.0% |
| !! | TTATTCAATAAACGTAAATT+AGG | - | tig0019900:99378-99397 | Msa1377360:intron | 15.0% |
| !! | TATTCAATAAACGTAAATTA+GGG | - | tig0019900:99379-99398 | Msa1377360:intron | 15.0% |
| !! | TAATATATCCAATATGGTTT+AGG | + | tig0019900:94757-94776 | None:intergenic | 20.0% |
| !! | GAGTAATAATATATCCAATA+TGG | + | tig0019900:94763-94782 | None:intergenic | 20.0% |
| !!! | CAATCAAGTTATTTCTATAA+TGG | - | tig0019900:95909-95928 | Msa1377360:intron | 20.0% |
| !! | GAAAGTAGAATAAACAAATT+TGG | - | tig0019900:96211-96230 | Msa1377360:intron | 20.0% |
| !!! | ACATGTGTTTAATTTTTGTA+AGG | + | tig0019900:96306-96325 | None:intergenic | 20.0% |
| !!! | TCCGAATATTTTTTTTTGAA+AGG | + | tig0019900:96390-96409 | None:intergenic | 20.0% |
| !! | AAAGAGAATATATCATATGA+CGG | + | tig0019900:97068-97087 | None:intergenic | 20.0% |
| !! | ATGAAAGATAAGATAATTGA+AGG | + | tig0019900:97138-97157 | None:intergenic | 20.0% |
| !! | AGAATAGAGTAATGAAATAA+AGG | + | tig0019900:97207-97226 | None:intergenic | 20.0% |
| !!! | TATTCTTTCTCTCATTTTTT+TGG | - | tig0019900:97221-97240 | Msa1377360:intron | 20.0% |
| !! | AACAACTAAAATACTAATGT+AGG | - | tig0019900:97590-97609 | Msa1377360:intron | 20.0% |
| !!! | TTGTTTTTTAAAAAAGTTCG+GGG | - | tig0019900:97802-97821 | Msa1377360:intron | 20.0% |
| !!! | AAACGATTCATAATACATTT+TGG | - | tig0019900:98032-98051 | Msa1377360:intron | 20.0% |
| !! | TTATATTCAATGTTGTTCTA+AGG | - | tig0019900:98345-98364 | Msa1377360:intron | 20.0% |
| !!! | TATAATTATGTTGTTGATTC+AGG | - | tig0019900:98482-98501 | Msa1377360:intron | 20.0% |
| !!! | ATAATTATGTTGTTGATTCA+GGG | - | tig0019900:98483-98502 | Msa1377360:intron | 20.0% |
| !! | TAAAATATCTGGAAAATTTG+GGG | + | tig0019900:98808-98827 | None:intergenic | 20.0% |
| !! | GTAAAATATCTGGAAAATTT+GGG | + | tig0019900:98809-98828 | None:intergenic | 20.0% |
| !! | AATAAACAATTTCCTCATAT+AGG | + | tig0019900:98831-98850 | None:intergenic | 20.0% |
| !!! | CCTTTGTATAGTTTTTTATT+CGG | + | tig0019900:99181-99200 | None:intergenic | 20.0% |
| !!! | GCTAAAAAAAATATTTTTGG+AGG | + | tig0019900:99212-99231 | None:intergenic | 20.0% |
| !!! | CAAGTTTAGCTTTATTTTCA+TGG | + | tig0019900:94870-94889 | None:intergenic | 25.0% |
| ! | TGTACTATGCTTATACTTTA+TGG | + | tig0019900:95196-95215 | None:intergenic | 25.0% |
| ! | TAAAGTATAAGCATAGTACA+CGG | - | tig0019900:95196-95215 | Msa1377360:intron | 25.0% |
| !!! | TATTAGTCTTTGACGTTAAT+CGG | + | tig0019900:95379-95398 | None:intergenic | 25.0% |
| ! | TGACTACCAGATTAATTATT+TGG | - | tig0019900:95399-95418 | Msa1377360:CDS | 25.0% |
| ! | GACTACCAGATTAATTATTT+GGG | - | tig0019900:95400-95419 | Msa1377360:CDS | 25.0% |
| ! | ACTACCAGATTAATTATTTG+GGG | - | tig0019900:95401-95420 | Msa1377360:CDS | 25.0% |
| ! | TTGCTAATTAAAACCCTAAA+TGG | - | tig0019900:95650-95669 | Msa1377360:CDS | 25.0% |
| ! | TTATTCCATTCAACCATTTA+GGG | + | tig0019900:95666-95685 | None:intergenic | 25.0% |
| !!! | TCAAGTTATTTCTATAATGG+TGG | - | tig0019900:95912-95931 | Msa1377360:intron | 25.0% |
| ! | TAGATGACTAGAAGTTAAAA+TGG | - | tig0019900:96255-96274 | Msa1377360:intron | 25.0% |
| ! | GAATTATGTTTACGATTGTT+CGG | + | tig0019900:96358-96377 | None:intergenic | 25.0% |
| ! | GAACAATCGTAAACATAATT+CGG | - | tig0019900:96357-96376 | Msa1377360:intron | 25.0% |
| ! | ACTACATCAAAACAACAAAT+TGG | - | tig0019900:96647-96666 | Msa1377360:intron | 25.0% |
| ! | GTAATTAGTGAGATAAAACT+TGG | + | tig0019900:96971-96990 | None:intergenic | 25.0% |
| ! | TTATCTCACTAATTACTTCA+TGG | - | tig0019900:96975-96994 | Msa1377360:intron | 25.0% |
| ! | AAGAGAATATATCATATGAC+GGG | + | tig0019900:97067-97086 | None:intergenic | 25.0% |
| ! | GATAAGATAATTGAAGGTTT+AGG | + | tig0019900:97132-97151 | None:intergenic | 25.0% |
| ! | AAAAATATAAGAACGGAGTA+TGG | + | tig0019900:97269-97288 | None:intergenic | 25.0% |
| !!! | ACTGATTTATGTTTTCAACT+TGG | + | tig0019900:97381-97400 | None:intergenic | 25.0% |
| !! | GGAATTTTATGGATATAAGA+AGG | - | tig0019900:97494-97513 | Msa1377360:intron | 25.0% |
| ! | AACTAAAATACTAATGTAGG+AGG | - | tig0019900:97593-97612 | Msa1377360:intron | 25.0% |
| !!! | TTTTTCTTTCTAAAAGTCTG+TGG | - | tig0019900:98081-98100 | Msa1377360:intron | 25.0% |
| !! | AACTTTTACTTTACTATCTG+AGG | - | tig0019900:98410-98429 | Msa1377360:intron | 25.0% |
| !!! | TAATTATGTTGTTGATTCAG+GGG | - | tig0019900:98484-98503 | Msa1377360:intron | 25.0% |
| ! | GGTAAAATATCTGGAAAATT+TGG | + | tig0019900:98810-98829 | None:intergenic | 25.0% |
| !!! | AGGATTTGTTTTGTTTTTTC+AGG | - | tig0019900:99078-99097 | Msa1377360:intron | 25.0% |
| ! | CCGAATAAAAAACTATACAA+AGG | - | tig0019900:99178-99197 | Msa1377360:intron | 25.0% |
| !!! | TAGCTTTTTTCTTGTTGTAA+CGG | - | tig0019900:99419-99438 | Msa1377360:CDS | 25.0% |
| ! | ACATTTCAATGTTGATATTG+CGG | - | tig0019900:99485-99504 | Msa1377360:CDS | 25.0% |
| ! | GTTTGTGCAATAAATTATCA+TGG | + | tig0019900:99653-99672 | None:intergenic | 25.0% |
| ! | GAATACTCTATATTGCATAA+TGG | - | tig0019900:99855-99874 | Msa1377360:CDS | 25.0% |
| TCACAATTTGAGGATTCAAA+AGG | - | tig0019900:94375-94394 | Msa1377360:CDS | 30.0% | |
| ! | CTTCTTTGGAGATGTTATTA+TGG | + | tig0019900:94455-94474 | None:intergenic | 30.0% |
| AGACATACATAATAAGAGCA+TGG | + | tig0019900:94965-94984 | None:intergenic | 30.0% | |
| AATAAACTTTCCTCTACGTT+AGG | + | tig0019900:94990-95009 | None:intergenic | 30.0% | |
| ATGCGAAATTAGTGAAGAAA+TGG | - | tig0019900:95290-95309 | Msa1377360:intron | 30.0% | |
| ! | TTTTATACATCATATGCACG+TGG | + | tig0019900:95318-95337 | None:intergenic | 30.0% |
| CTACCAGATTAATTATTTGG+GGG | - | tig0019900:95402-95421 | Msa1377360:CDS | 30.0% | |
| TACCAGATTAATTATTTGGG+GGG | - | tig0019900:95403-95422 | Msa1377360:CDS | 30.0% | |
| TAAAACCCTAAATGGTTGAA+TGG | - | tig0019900:95658-95677 | Msa1377360:CDS | 30.0% | |
| CTTATTCCATTCAACCATTT+AGG | + | tig0019900:95667-95686 | None:intergenic | 30.0% | |
| AAGAAACCAAAAGTAAGTGA+TGG | - | tig0019900:95720-95739 | Msa1377360:CDS | 30.0% | |
| ! | TGATTGCTACAAACATTTTG+TGG | + | tig0019900:95785-95804 | None:intergenic | 30.0% |
| ATCATGAAAGACATAGTTGT+AGG | - | tig0019900:95801-95820 | Msa1377360:intron | 30.0% | |
| ! | GTTTTCACAACACATAGAAT+TGG | - | tig0019900:95842-95861 | Msa1377360:intron | 30.0% |
| ! | TCTTAATAAGTTGAGTATCC+TGG | + | tig0019900:95946-95965 | None:intergenic | 30.0% |
| TGAAGCAAGGCAATATATAT+TGG | + | tig0019900:95971-95990 | None:intergenic | 30.0% | |
| ! | TAGGAGATTCACTAATCTTT+TGG | + | tig0019900:96001-96020 | None:intergenic | 30.0% |
| TGCTTACACATACGATAATT+TGG | + | tig0019900:96072-96091 | None:intergenic | 30.0% | |
| ! | CTTTGAAAATACTCTTTGCT+CGG | + | tig0019900:96464-96483 | None:intergenic | 30.0% |
| TTGTTTCATGTTTGCACAAA+AGG | - | tig0019900:96767-96786 | Msa1377360:intron | 30.0% | |
| !!! | TTTCTCTCATTTTTTTGGAG+TGG | - | tig0019900:97226-97245 | Msa1377360:intron | 30.0% |
| TAAGAAGGTTAAGTATCTTG+AGG | - | tig0019900:97509-97528 | Msa1377360:intron | 30.0% | |
| TTCTAAATGAGATTGTAGTG+AGG | - | tig0019900:97690-97709 | Msa1377360:intron | 30.0% | |
| GAAACATTTAAACCAACATG+TGG | - | tig0019900:97886-97905 | Msa1377360:intron | 30.0% | |
| AAGTCATTATTACCACATGT+TGG | + | tig0019900:97901-97920 | None:intergenic | 30.0% | |
| ! | AAAGAGTGTATAGAAATGCT+TGG | + | tig0019900:98112-98131 | None:intergenic | 30.0% |
| ATCAAATTACCTGAATTCCA+AGG | + | tig0019900:98279-98298 | None:intergenic | 30.0% | |
| ! | TGTTACTCTTTTGCTTTAGT+AGG | - | tig0019900:98322-98341 | Msa1377360:intron | 30.0% |
| ! | TTTTACTTTACTATCTGAGG+AGG | - | tig0019900:98413-98432 | Msa1377360:intron | 30.0% |
| !! | GGATTAGTTAAGCTATAACT+TGG | + | tig0019900:98532-98551 | None:intergenic | 30.0% |
| CTTATAAAACACGTTTGTCA+AGG | - | tig0019900:98578-98597 | Msa1377360:intron | 30.0% | |
| AAGATGCTTATTTACTTGAC+AGG | - | tig0019900:98742-98761 | Msa1377360:intron | 30.0% | |
| CCTCATATAGGTAAAATATC+TGG | + | tig0019900:98819-98838 | None:intergenic | 30.0% | |
| ! | CCAGATATTTTACCTATATG+AGG | - | tig0019900:98816-98835 | Msa1377360:intron | 30.0% |
| !!! | TTTCAAGTTTCACGTTTTTG+CGG | - | tig0019900:98953-98972 | Msa1377360:intron | 30.0% |
| TGGTAAAAAGATGACATCTA+AGG | + | tig0019900:99046-99065 | None:intergenic | 30.0% | |
| GATAATCGGAATATGAAAGA+CGG | + | tig0019900:99278-99297 | None:intergenic | 30.0% | |
| ATATTCCGATTATCAACCAT+AGG | - | tig0019900:99284-99303 | Msa1377360:intron | 30.0% | |
| AAATGTAAAGTCCTATCCTA+TGG | + | tig0019900:99303-99322 | None:intergenic | 30.0% | |
| ATAGGATAGGACTTTACATT+TGG | - | tig0019900:99302-99321 | Msa1377360:intron | 30.0% | |
| AATAAACGTAAATTAGGGTG+CGG | - | tig0019900:99384-99403 | Msa1377360:intron | 30.0% | |
| !!! | AGCTTTTTTCTTGTTGTAAC+GGG | - | tig0019900:99420-99439 | Msa1377360:CDS | 30.0% |
| TTCTGCGGTATAAAATACAA+GGG | + | tig0019900:99763-99782 | None:intergenic | 30.0% | |
| TTTCTGCGGTATAAAATACA+AGG | + | tig0019900:99764-99783 | None:intergenic | 30.0% | |
| !!! | AGTAGAACTTTTGTTTTCTG+CGG | + | tig0019900:99778-99797 | None:intergenic | 30.0% |
| ATATAATGTCACTCCTAAGA+AGG | - | tig0019900:99818-99837 | Msa1377360:CDS | 30.0% | |
| ! | ATAGAGTATTCTTCAGTAGT+CGG | + | tig0019900:99846-99865 | None:intergenic | 30.0% |
| TGAATCCTCAAATTGTGAGT+TGG | + | tig0019900:94373-94392 | None:intergenic | 35.0% | |
| TATGGTTTCTTCAGTTGAAG+AGG | + | tig0019900:94437-94456 | None:intergenic | 35.0% | |
| TCCAAAGAAGTTAGACTATC+CGG | - | tig0019900:94465-94484 | Msa1377360:CDS | 35.0% | |
| ACATGATCCACACTTGATTT+CGG | + | tig0019900:94515-94534 | None:intergenic | 35.0% | |
| !!! | TTACAATTTTGAGGGCACTT+GGG | + | tig0019900:94673-94692 | None:intergenic | 35.0% |
| !!! | AATTTCCTGGTTTTGGCTTT+AGG | - | tig0019900:94805-94824 | Msa1377360:intron | 35.0% |
| ! | ATAAACTCTTTTCACGAGCT+TGG | - | tig0019900:95156-95175 | Msa1377360:intron | 35.0% |
| TGACATGTCATGACAACTAA+TGG | - | tig0019900:95342-95361 | Msa1377360:intron | 35.0% | |
| ACCAGATTAATTATTTGGGG+GGG | - | tig0019900:95404-95423 | Msa1377360:CDS | 35.0% | |
| TTACTCTTCATGTAAGAGAG+TGG | + | tig0019900:95483-95502 | None:intergenic | 35.0% | |
| TGTTCGAGAATCTCATAAGA+TGG | - | tig0019900:95557-95576 | Msa1377360:CDS | 35.0% | |
| AATTTCGACCATGAGTTTGA+GGG | + | tig0019900:95621-95640 | None:intergenic | 35.0% | |
| TAATTTCGACCATGAGTTTG+AGG | + | tig0019900:95622-95641 | None:intergenic | 35.0% | |
| GGTAAATATGATGTCTAGTG+AGG | - | tig0019900:95749-95768 | Msa1377360:intron | 35.0% | |
| !! | TTTTGGAAGAGTATGAAGCA+AGG | + | tig0019900:95984-96003 | None:intergenic | 35.0% |
| TACACATACGATAATTTGGC+TGG | + | tig0019900:96068-96087 | None:intergenic | 35.0% | |
| TGTAAGCACATATTCCAGTA+AGG | - | tig0019900:96084-96103 | Msa1377360:CDS | 35.0% | |
| TAAGACTTCTACTTCCTTAC+TGG | + | tig0019900:96101-96120 | None:intergenic | 35.0% | |
| AGTGCCTTGAAGATAATGTA+GGG | - | tig0019900:96128-96147 | Msa1377360:intron | 35.0% | |
| TGAGAAACAAATTGTGACTG+AGG | - | tig0019900:96164-96183 | Msa1377360:intron | 35.0% | |
| GGTAAAAGAGAAGAAAACGA+AGG | - | tig0019900:96185-96204 | Msa1377360:intron | 35.0% | |
| !!! | CGAGCAAAGAGTATTTTCAA+AGG | - | tig0019900:96462-96481 | Msa1377360:intron | 35.0% |
| AGACGCGTGAGAAATATATA+AGG | - | tig0019900:96494-96513 | Msa1377360:intron | 35.0% | |
| !! | AAAATCTTTGATGGGCTTCT+AGG | + | tig0019900:96554-96573 | None:intergenic | 35.0% |
| CATCAAAACAACAAATTGGC+CGG | - | tig0019900:96651-96670 | Msa1377360:intron | 35.0% | |
| AACAAATTTCTCACTGTTCC+CGG | + | tig0019900:96713-96732 | None:intergenic | 35.0% | |
| ! | GAACAGTGAGAAATTTGTTC+AGG | - | tig0019900:96714-96733 | Msa1377360:intron | 35.0% |
| GTAACGTTAAACAATCATCG+AGG | + | tig0019900:96808-96827 | None:intergenic | 35.0% | |
| CTCTTTACTACAAAATCCAC+AGG | - | tig0019900:97082-97101 | Msa1377360:intron | 35.0% | |
| ATTGAAGGTTTAGGCTGTTT+GGG | + | tig0019900:97123-97142 | None:intergenic | 35.0% | |
| AATTGAAGGTTTAGGCTGTT+TGG | + | tig0019900:97124-97143 | None:intergenic | 35.0% | |
| ! | GTAGTCAGGAATTTAGCTTA+GGG | - | tig0019900:97353-97372 | Msa1377360:intron | 35.0% |
| ! | TAGTCAGGAATTTAGCTTAG+GGG | - | tig0019900:97354-97373 | Msa1377360:intron | 35.0% |
| GAGTGTACAAACAAAATCGT+AGG | - | tig0019900:97653-97672 | Msa1377360:intron | 35.0% | |
| ACTGAATGTCCTGTTATTGT+AGG | - | tig0019900:98170-98189 | Msa1377360:intron | 35.0% | |
| CTGAATGTCCTGTTATTGTA+GGG | - | tig0019900:98171-98190 | Msa1377360:intron | 35.0% | |
| ! | ACTGATTTCCCTACAATAAC+AGG | + | tig0019900:98182-98201 | None:intergenic | 35.0% |
| ! | GAAATCAGTGTTGCTAATCA+TGG | - | tig0019900:98193-98212 | Msa1377360:intron | 35.0% |
| TGGTATGGTCTAGTATAAGT+AGG | - | tig0019900:98213-98232 | Msa1377360:intron | 35.0% | |
| AGCTTAACTAATCCTAGTAC+TGG | - | tig0019900:98538-98557 | Msa1377360:intron | 35.0% | |
| ! | TTTTTGCTCTGTAGATGCAT+GGG | + | tig0019900:98716-98735 | None:intergenic | 35.0% |
| ! | ATTTTTGCTCTGTAGATGCA+TGG | + | tig0019900:98717-98736 | None:intergenic | 35.0% |
| !!! | ATGTGTCACTTTGTTTTCAG+TGG | - | tig0019900:98873-98892 | Msa1377360:intron | 35.0% |
| ! | CATTTTCTCGTCAAATTCGT+TGG | - | tig0019900:98901-98920 | Msa1377360:intron | 35.0% |
| GTGTTGAAGAAATGTTTGCA+AGG | - | tig0019900:98977-98996 | Msa1377360:intron | 35.0% | |
| GGTGTAAAAATAACACCTTG+AGG | + | tig0019900:99025-99044 | None:intergenic | 35.0% | |
| ! | AGATGTCATCTTTTTACCAG+TGG | - | tig0019900:99047-99066 | Msa1377360:intron | 35.0% |
| !! | TTTTACCAGTGGTTTGTGAT+AGG | - | tig0019900:99058-99077 | Msa1377360:intron | 35.0% |
| !! | CCTATCCTATGGTTGATAAT+CGG | + | tig0019900:99292-99311 | None:intergenic | 35.0% |
| GACTTTACATTTGGCATGTA+CGG | - | tig0019900:99311-99330 | Msa1377360:intron | 35.0% | |
| ACTTTACATTTGGCATGTAC+GGG | - | tig0019900:99312-99331 | Msa1377360:intron | 35.0% | |
| AAAGGTAGCTCATCAAGTAT+CGG | + | tig0019900:99446-99465 | None:intergenic | 35.0% | |
| !!! | TGATGAGCTACCTTTTTTTC+AGG | - | tig0019900:99451-99470 | Msa1377360:CDS | 35.0% |
| !!! | GATGAGCTACCTTTTTTTCA+GGG | - | tig0019900:99452-99471 | Msa1377360:CDS | 35.0% |
| CCACAATTTCCCTGAAAAAA+AGG | + | tig0019900:99464-99483 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTTCAGGGAAATTG+TGG | - | tig0019900:99461-99480 | Msa1377360:CDS | 35.0% |
| TTCAATGTTGATATTGCGGA+TGG | - | tig0019900:99489-99508 | Msa1377360:CDS | 35.0% | |
| TCAATGTTGATATTGCGGAT+GGG | - | tig0019900:99490-99509 | Msa1377360:CDS | 35.0% | |
| TGTGTAGAAACAAACTTCCA+TGG | + | tig0019900:99519-99538 | None:intergenic | 35.0% | |
| ATGGAAACACAGCATATTTG+CGG | + | tig0019900:99580-99599 | None:intergenic | 35.0% | |
| CATTATTCATTTGCTCTACC+AGG | - | tig0019900:99713-99732 | Msa1377360:CDS | 35.0% | |
| AAAAGTTCTACTCCGATAAC+CGG | - | tig0019900:99786-99805 | Msa1377360:CDS | 35.0% | |
| CTTCTCCAACTCACAATTTG+AGG | - | tig0019900:94365-94384 | Msa1377360:CDS | 40.0% | |
| ACCGGATAGTCTAACTTCTT+TGG | + | tig0019900:94469-94488 | None:intergenic | 40.0% | |
| AAAGAAGTTAGACTATCCGG+TGG | - | tig0019900:94468-94487 | Msa1377360:CDS | 40.0% | |
| !!! | GTTACAATTTTGAGGGCACT+TGG | + | tig0019900:94674-94693 | None:intergenic | 40.0% |
| ! | GCAAGGGGTTACAATTTTGA+GGG | + | tig0019900:94681-94700 | None:intergenic | 40.0% |
| ! | AGCAAGGGGTTACAATTTTG+AGG | + | tig0019900:94682-94701 | None:intergenic | 40.0% |
| ACATATACGAATCTTGGTGG+TGG | + | tig0019900:94718-94737 | None:intergenic | 40.0% | |
| ACTGGCACATATACGAATCT+TGG | + | tig0019900:94724-94743 | None:intergenic | 40.0% | |
| !! | CAATATGGTTTAGGTTGACC+TGG | + | tig0019900:94748-94767 | None:intergenic | 40.0% |
| CAGGTCAACCTAAACCATAT+TGG | - | tig0019900:94746-94765 | Msa1377360:intron | 40.0% | |
| AAGTAGTGCAGTGAATTTCC+TGG | - | tig0019900:94792-94811 | Msa1377360:intron | 40.0% | |
| ! | TGCAGTGAATTTCCTGGTTT+TGG | - | tig0019900:94798-94817 | Msa1377360:intron | 40.0% |
| ! | CTCTCAATTGCAACGGTTTT+CGG | - | tig0019900:94835-94854 | Msa1377360:intron | 40.0% |
| GTATGTCTTTCCTAACGTAG+AGG | - | tig0019900:94977-94996 | Msa1377360:intron | 40.0% | |
| ! | CATTTAAGACCCTAAAAGCG+TGG | - | tig0019900:95267-95286 | Msa1377360:intron | 40.0% |
| ! | ATTTCGCATCCACGCTTTTA+GGG | + | tig0019900:95279-95298 | None:intergenic | 40.0% |
| ! | AATTTCGCATCCACGCTTTT+AGG | + | tig0019900:95280-95299 | None:intergenic | 40.0% |
| CCAGATTAATTATTTGGGGG+GGG | - | tig0019900:95405-95424 | Msa1377360:CDS | 40.0% | |
| CAGATTAATTATTTGGGGGG+GGG | - | tig0019900:95406-95425 | Msa1377360:CDS | 40.0% | |
| AGATTAATTATTTGGGGGGG+GGG | - | tig0019900:95407-95426 | Msa1377360:CDS | 40.0% | |
| AACATTACCCCTCAAACTCA+TGG | - | tig0019900:95610-95629 | Msa1377360:CDS | 40.0% | |
| ATTTCGACCATGAGTTTGAG+GGG | + | tig0019900:95620-95639 | None:intergenic | 40.0% | |
| ! | AAAAGTAAGTGATGGTGCTG+CGG | - | tig0019900:95728-95747 | Msa1377360:CDS | 40.0% |
| ! | ATAATGGTGGAAGTAATGCC+AGG | - | tig0019900:95925-95944 | Msa1377360:intron | 40.0% |
| GAGTGCCTTGAAGATAATGT+AGG | - | tig0019900:96127-96146 | Msa1377360:intron | 40.0% | |
| CCTTGAAGATAATGTAGGGT+GGG | - | tig0019900:96132-96151 | Msa1377360:intron | 40.0% | |
| !!! | CCGGCAATCTTTTTGTTTTC+CGG | + | tig0019900:96673-96692 | None:intergenic | 40.0% |
| CCGGAAAACAAAAAGATTGC+CGG | - | tig0019900:96670-96689 | Msa1377360:intron | 40.0% | |
| ATGAAAAGAGCAGCAGAACA+GGG | + | tig0019900:97184-97203 | None:intergenic | 40.0% | |
| ! | CGTAGTCAGGAATTTAGCTT+AGG | - | tig0019900:97352-97371 | Msa1377360:intron | 40.0% |
| AAGAAGCAACAGATCAAGGA+CGG | + | tig0019900:97861-97880 | None:intergenic | 40.0% | |
| ! | CAGTGTTGCTAATCATGGTA+TGG | - | tig0019900:98198-98217 | Msa1377360:intron | 40.0% |
| !! | TTTCGCAAAGCTCTAAGGTA+TGG | + | tig0019900:98254-98273 | None:intergenic | 40.0% |
| AGGAATTTCGCAAAGCTCTA+AGG | + | tig0019900:98259-98278 | None:intergenic | 40.0% | |
| TAGAGCTTTGCGAAATTCCT+TGG | - | tig0019900:98259-98278 | Msa1377360:intron | 40.0% | |
| TGCGAAATTCCTTGGAATTC+AGG | - | tig0019900:98267-98286 | Msa1377360:intron | 40.0% | |
| GTCCTTCAGGAATAATAGAG+TGG | + | tig0019900:98510-98529 | None:intergenic | 40.0% | |
| AAGCTATAACTTGGTCCTTC+AGG | + | tig0019900:98523-98542 | None:intergenic | 40.0% | |
| TTACGCTGTAATCCAGTACT+AGG | + | tig0019900:98553-98572 | None:intergenic | 40.0% | |
| ACGTTTGTCAAGGTTTAAGC+AGG | - | tig0019900:98588-98607 | Msa1377360:intron | 40.0% | |
| TCCAACATTCTGTGAAGCAA+AGG | + | tig0019900:98656-98675 | None:intergenic | 40.0% | |
| TTGCTTCACAGAATGTTGGA+AGG | - | tig0019900:98656-98675 | Msa1377360:intron | 40.0% | |
| !!! | TTTTTTCCGAAGAATGCGTG+AGG | - | tig0019900:98849-98868 | Msa1377360:intron | 40.0% |
| GAAATCAAACAGTCACCTCA+AGG | - | tig0019900:99007-99026 | Msa1377360:intron | 40.0% | |
| CAAATCCTATCACAAACCAC+TGG | + | tig0019900:99066-99085 | None:intergenic | 40.0% | |
| !! | TATGAAAGACGGTTTGGTGA+AGG | + | tig0019900:99267-99286 | None:intergenic | 40.0% |
| TCGGAATATGAAAGACGGTT+TGG | + | tig0019900:99273-99292 | None:intergenic | 40.0% | |
| CCGATTATCAACCATAGGAT+AGG | - | tig0019900:99289-99308 | Msa1377360:intron | 40.0% | |
| CTTTACATTTGGCATGTACG+GGG | - | tig0019900:99313-99332 | Msa1377360:intron | 40.0% | |
| !! | GTTTGTTTCTACACAGAGAG+AGG | - | tig0019900:99524-99543 | Msa1377360:CDS | 40.0% |
| AACACAGCATATTTGCGGTA+AGG | + | tig0019900:99575-99594 | None:intergenic | 40.0% | |
| ! | ACTTTTCCCTCTCAGTATCA+GGG | + | tig0019900:99677-99696 | None:intergenic | 40.0% |
| TTCATTTGCTCTACCAGGTT+AGG | - | tig0019900:99718-99737 | Msa1377360:CDS | 40.0% | |
| TCATTTGCTCTACCAGGTTA+GGG | - | tig0019900:99719-99738 | Msa1377360:CDS | 40.0% | |
| !! | AAATACAAGGGCACTTTCTC+CGG | + | tig0019900:99751-99770 | None:intergenic | 40.0% |
| GACATTATATGTCGCAACAC+CGG | + | tig0019900:99808-99827 | None:intergenic | 40.0% | |
| !! | CACTTGATTTCGGTGTCTTC+CGG | + | tig0019900:94505-94524 | None:intergenic | 45.0% |
| GAAGACACCGAAATCAAGTG+TGG | - | tig0019900:94505-94524 | Msa1377360:intron | 45.0% | |
| AAGTGTGGATCATGTCCTTG+TGG | - | tig0019900:94520-94539 | Msa1377360:intron | 45.0% | |
| TGTCCTTGTGGACAAACATG+TGG | - | tig0019900:94532-94551 | Msa1377360:intron | 45.0% | |
| TCACCACATGTTTGTCCACA+AGG | + | tig0019900:94538-94557 | None:intergenic | 45.0% | |
| !! | TATACGAATCTTGGTGGTGG+CGG | + | tig0019900:94715-94734 | None:intergenic | 45.0% |
| GGCACATATACGAATCTTGG+TGG | + | tig0019900:94721-94740 | None:intergenic | 45.0% | |
| !!! | TTCCTGGTTTTGGCTTTAGG+AGG | - | tig0019900:94808-94827 | Msa1377360:intron | 45.0% |
| AGGAGGACTCTCAATTGCAA+CGG | - | tig0019900:94828-94847 | Msa1377360:intron | 45.0% | |
| CCCCCCCCAAATAATTAATC+TGG | + | tig0019900:95408-95427 | None:intergenic | 45.0% | |
| GATTAATTATTTGGGGGGGG+GGG | - | tig0019900:95408-95427 | Msa1377360:CDS | 45.0% | |
| ATTAATTATTTGGGGGGGGG+GGG | - | tig0019900:95409-95428 | Msa1377360:CDS | 45.0% | |
| ! | GCAGCACCATCACTTACTTT+TGG | + | tig0019900:95729-95748 | None:intergenic | 45.0% |
| GCCTTGAAGATAATGTAGGG+TGG | - | tig0019900:96131-96150 | Msa1377360:intron | 45.0% | |
| CCCACCCTACATTATCTTCA+AGG | + | tig0019900:96135-96154 | None:intergenic | 45.0% | |
| AAATTTCTCACTGTTCCCGG+CGG | + | tig0019900:96710-96729 | None:intergenic | 45.0% | |
| GTAGTCAAATCACTAGGCAG+AGG | + | tig0019900:97045-97064 | None:intergenic | 45.0% | |
| ! | TGACGGGTAGTCAAATCACT+AGG | + | tig0019900:97051-97070 | None:intergenic | 45.0% |
| GATGAAAAGAGCAGCAGAAC+AGG | + | tig0019900:97185-97204 | None:intergenic | 45.0% | |
| TTGGTTGTGCAACACAGTCA+TGG | - | tig0019900:97298-97317 | Msa1377360:intron | 45.0% | |
| ATCAGCACCATCTGTTTGCA+GGG | - | tig0019900:97328-97347 | Msa1377360:intron | 45.0% | |
| ! | GACCAGTGAGTTGTTGATAG+TGG | - | tig0019900:97626-97645 | Msa1377360:intron | 45.0% |
| AGCCACTATCAACAACTCAC+TGG | + | tig0019900:97631-97650 | None:intergenic | 45.0% | |
| GGTAGAAAAGGGACCAACAA+AGG | + | tig0019900:97837-97856 | None:intergenic | 45.0% | |
| TCAAGGACGGAGGTAGAAAA+GGG | + | tig0019900:97848-97867 | None:intergenic | 45.0% | |
| ATCAAGGACGGAGGTAGAAA+AGG | + | tig0019900:97849-97868 | None:intergenic | 45.0% | |
| GCACAAGAAGCAACAGATCA+AGG | + | tig0019900:97865-97884 | None:intergenic | 45.0% | |
| GGCCACTCTATTATTCCTGA+AGG | - | tig0019900:98505-98524 | Msa1377360:intron | 45.0% | |
| CTGAAATGCGGTAACATTGC+TGG | + | tig0019900:98633-98652 | None:intergenic | 45.0% | |
| GTGAAGCAAAGGCTGAAATG+CGG | + | tig0019900:98645-98664 | None:intergenic | 45.0% | |
| GCCTTTGCTTCACAGAATGT+TGG | - | tig0019900:98652-98671 | Msa1377360:intron | 45.0% | |
| !! | GATGAGAAGTGTCGAAAACC+AGG | + | tig0019900:98694-98713 | None:intergenic | 45.0% |
| ! | TACTTGACAGGCTTGCTCTT+TGG | - | tig0019900:98754-98773 | Msa1377360:intron | 45.0% |
| CACATACCTCACGCATTCTT+CGG | + | tig0019900:98858-98877 | None:intergenic | 45.0% | |
| AATTTCCGACACACACACAC+TGG | - | tig0019900:99132-99151 | Msa1377360:intron | 45.0% | |
| ATTTCCGACACACACACACT+GGG | - | tig0019900:99133-99152 | Msa1377360:intron | 45.0% | |
| GCATATTTGCGGTAAGGTTG+AGG | + | tig0019900:99569-99588 | None:intergenic | 45.0% | |
| ! | TTTTCCCTCTCAGTATCAGG+GGG | + | tig0019900:99675-99694 | None:intergenic | 45.0% |
| ! | CTTTTCCCTCTCAGTATCAG+GGG | + | tig0019900:99676-99695 | None:intergenic | 45.0% |
| ! | CACTTTTCCCTCTCAGTATC+AGG | + | tig0019900:99678-99697 | None:intergenic | 45.0% |
| !! | AATACAAGGGCACTTTCTCC+GGG | + | tig0019900:99750-99769 | None:intergenic | 45.0% |
| ! | TATGTCGCAACACCGGTTAT+CGG | + | tig0019900:99801-99820 | None:intergenic | 45.0% |
| TCAGTAGTCGGTACCTTCTT+AGG | + | tig0019900:99834-99853 | None:intergenic | 45.0% | |
| !! | TATAAAATTAAATTATATGA+TGG | + | tig0019900:99599-99618 | None:intergenic | 5.0% |
| !! | TTGATTTCGGTGTCTTCCGG+TGG | + | tig0019900:94502-94521 | None:intergenic | 50.0% |
| !!! | CAATTTTGAGGGCACTTGGG+AGG | + | tig0019900:94670-94689 | None:intergenic | 50.0% |
| !! | ATACGAATCTTGGTGGTGGC+GGG | + | tig0019900:94714-94733 | None:intergenic | 50.0% |
| TTCGTATATGTGCCAGTGCC+AGG | - | tig0019900:94727-94746 | Msa1377360:intron | 50.0% | |
| CTCCTCCTAAAGCCAAAACC+AGG | + | tig0019900:94813-94832 | None:intergenic | 50.0% | |
| !!! | CTGGTTTTGGCTTTAGGAGG+AGG | - | tig0019900:94811-94830 | Msa1377360:intron | 50.0% |
| TTAATTATTTGGGGGGGGGG+GGG | - | tig0019900:95410-95429 | Msa1377360:CDS | 50.0% | |
| GGCGGCAACGTGTAAATTTC+CGG | + | tig0019900:96692-96711 | None:intergenic | 50.0% | |
| GGAAATTTACACGTTGCCGC+CGG | - | tig0019900:96691-96710 | Msa1377360:intron | 50.0% | |
| GAAATTTACACGTTGCCGCC+GGG | - | tig0019900:96692-96711 | Msa1377360:intron | 50.0% | |
| CATCAGCACCATCTGTTTGC+AGG | - | tig0019900:97327-97346 | Msa1377360:intron | 50.0% | |
| ACTACGTCCCTGCAAACAGA+TGG | + | tig0019900:97338-97357 | None:intergenic | 50.0% | |
| AAGCAACAGATCAAGGACGG+AGG | + | tig0019900:97858-97877 | None:intergenic | 50.0% | |
| !! | GAAGTGTCGAAAACCAGGCA+TGG | + | tig0019900:98689-98708 | None:intergenic | 50.0% |
| ! | GACAGGCTTGCTCTTTGGAA+TGG | - | tig0019900:98759-98778 | Msa1377360:intron | 50.0% |
| !! | GGCTTGCTCTTTGGAATGGT+TGG | - | tig0019900:98763-98782 | Msa1377360:intron | 50.0% |
| AACACCCAGTGTGTGTGTGT+CGG | + | tig0019900:99140-99159 | None:intergenic | 50.0% | |
| ATATTGCGGATGGGATGCCA+TGG | - | tig0019900:99499-99518 | Msa1377360:CDS | 50.0% | |
| ACAAACCCCCTGATACTGAG+AGG | - | tig0019900:99667-99686 | Msa1377360:CDS | 50.0% | |
| CAAACCCCCTGATACTGAGA+GGG | - | tig0019900:99668-99687 | Msa1377360:CDS | 50.0% | |
| !! | ATTTCGGTGTCTTCCGGTGG+CGG | + | tig0019900:94499-94518 | None:intergenic | 55.0% |
| !! | GTTGGTGGTTGACAAGGAGG+CGG | + | tig0019900:94586-94605 | None:intergenic | 55.0% |
| !! | GGTGTTGGTGGTTGACAAGG+AGG | + | tig0019900:94589-94608 | None:intergenic | 55.0% |
| !! | GGTGGTGTTGGTGGTTGACA+AGG | + | tig0019900:94592-94611 | None:intergenic | 55.0% |
| !!! | TTTTGAGGGCACTTGGGAGG+AGG | + | tig0019900:94667-94686 | None:intergenic | 55.0% |
| !! | TACGAATCTTGGTGGTGGCG+GGG | + | tig0019900:94713-94732 | None:intergenic | 55.0% |
| !! | GGTTTAGGTTGACCTGGCAC+TGG | + | tig0019900:94742-94761 | None:intergenic | 55.0% |
| TAATTATTTGGGGGGGGGGG+GGG | - | tig0019900:95411-95430 | Msa1377360:CDS | 55.0% | |
| GCATGCAGAGAGAAGACCTG+TGG | + | tig0019900:97101-97120 | None:intergenic | 55.0% | |
| CTGTTTGCAGGGACGTAGTC+AGG | - | tig0019900:97339-97358 | Msa1377360:intron | 55.0% | |
| GGGGAGACTGTGACCTTTGT+TGG | - | tig0019900:97821-97840 | Msa1377360:intron | 55.0% | |
| TACCAGGTTAGGGTGAAGCC+CGG | - | tig0019900:99729-99748 | Msa1377360:CDS | 55.0% | |
| ! | GCGGGGATGATGGTAGCAAG+GGG | + | tig0019900:94696-94715 | None:intergenic | 60.0% |
| ! | GGCGGGGATGATGGTAGCAA+GGG | + | tig0019900:94697-94716 | None:intergenic | 60.0% |
| ! | TGGCGGGGATGATGGTAGCA+AGG | + | tig0019900:94698-94717 | None:intergenic | 60.0% |
| AATTATTTGGGGGGGGGGGG+GGG | - | tig0019900:95412-95431 | Msa1377360:CDS | 60.0% | |
| GGAAGGCTGTGTTCCATGCC+TGG | - | tig0019900:98673-98692 | Msa1377360:intron | 60.0% | |
| TCCGGTGGTTGTTCCGCCAC+CGG | - | tig0019900:94483-94502 | Msa1377360:CDS | 65.0% | |
| !! | TCCGGTGGCGGAACAACCAC+CGG | + | tig0019900:94487-94506 | None:intergenic | 65.0% |
| GAGGCGGAGGTGGAGGAGAT+TGG | + | tig0019900:94561-94580 | None:intergenic | 65.0% | |
| TGACAAGGAGGCGGTGGAGG+CGG | + | tig0019900:94577-94596 | None:intergenic | 65.0% | |
| GGTTGACAAGGAGGCGGTGG+AGG | + | tig0019900:94580-94599 | None:intergenic | 65.0% | |
| GGTGGTTGACAAGGAGGCGG+TGG | + | tig0019900:94583-94602 | None:intergenic | 65.0% | |
| !! | CAAGGTGGTGGAGGTGGTGG+TGG | + | tig0019900:94619-94638 | None:intergenic | 65.0% |
| !! | GGACAAGGTGGTGGAGGTGG+TGG | + | tig0019900:94622-94641 | None:intergenic | 65.0% |
| AGAGGAGGAGGCGGACAAGG+TGG | + | tig0019900:94634-94653 | None:intergenic | 65.0% | |
| GGAAGAGGAGGAGGCGGACA+AGG | + | tig0019900:94637-94656 | None:intergenic | 65.0% | |
| GGAGGAGGAAGAGGAGGAGG+CGG | + | tig0019900:94643-94662 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAAGAGGAGG+AGG | + | tig0019900:94646-94665 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGGAAGAGG+AGG | + | tig0019900:94649-94668 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGGAGGAAG+AGG | + | tig0019900:94652-94671 | None:intergenic | 65.0% | |
| CACTTGGGAGGAGGAGGAGG+AGG | + | tig0019900:94658-94677 | None:intergenic | 65.0% | |
| !! | TGAGGGCACTTGGGAGGAGG+AGG | + | tig0019900:94664-94683 | None:intergenic | 65.0% |
| !! | CTTGGTGGTGGCGGGGATGA+TGG | + | tig0019900:94706-94725 | None:intergenic | 65.0% |
| ATTATTTGGGGGGGGGGGGG+GGG | - | tig0019900:95413-95432 | Msa1377360:CDS | 65.0% | |
| CTCCGGGCTTCACCCTAACC+TGG | + | tig0019900:99734-99753 | None:intergenic | 65.0% | |
| ! | GGTGGCGGTGGTGGTGTTGG+TGG | + | tig0019900:94601-94620 | None:intergenic | 70.0% |
| !! | GGTGGTGGCGGTGGTGGTGT+TGG | + | tig0019900:94604-94623 | None:intergenic | 70.0% |
| !! | GGTGGTGGAGGTGGTGGTGG+CGG | + | tig0019900:94616-94635 | None:intergenic | 70.0% |
| !! | GGCGGACAAGGTGGTGGAGG+TGG | + | tig0019900:94625-94644 | None:intergenic | 70.0% |
| ! | GGAGGCGGACAAGGTGGTGG+AGG | + | tig0019900:94628-94647 | None:intergenic | 70.0% |
| GGAGGAGGCGGACAAGGTGG+TGG | + | tig0019900:94631-94650 | None:intergenic | 70.0% | |
| GGGCACTTGGGAGGAGGAGG+AGG | + | tig0019900:94661-94680 | None:intergenic | 70.0% | |
| TTATTTGGGGGGGGGGGGGG+GGG | - | tig0019900:95414-95433 | Msa1377360:CDS | 70.0% | |
| CAAGGAGGCGGTGGAGGCGG+AGG | + | tig0019900:94574-94593 | None:intergenic | 75.0% | |
| !! | GGAGGTGGTGGTGGCGGTGG+TGG | + | tig0019900:94610-94629 | None:intergenic | 75.0% |
| !! | GGTGGAGGTGGTGGTGGCGG+TGG | + | tig0019900:94613-94632 | None:intergenic | 75.0% |
| TATTTGGGGGGGGGGGGGGG+GGG | - | tig0019900:95415-95434 | Msa1377360:CDS | 75.0% | |
| ! | GGCGGTGGAGGCGGAGGTGG+AGG | + | tig0019900:94568-94587 | None:intergenic | 80.0% |
| ! | GGAGGCGGTGGAGGCGGAGG+TGG | + | tig0019900:94571-94590 | None:intergenic | 80.0% |
| ! | ATTTGGGGGGGGGGGGGGGG+GGG | - | tig0019900:95416-95435 | Msa1377360:CDS | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | - | tig0019900:95417-95436 | Msa1377360:CDS | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | tig0019900:95418-95437 | Msa1377360:CDS | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | tig0019900:95419-95438 | Msa1377360:CDS | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019900 | gene | 94361 | 99890 | 94361 | ID=Msa1377360;Name=Msa1377360 |
| tig0019900 | mRNA | 94361 | 99890 | 94361 | ID=Msa1377360-mRNA-1;Parent=Msa1377360;Name=Msa1377360-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|1|1|4|0|387 |
| tig0019900 | exon | 99402 | 99890 | 99402 | ID=Msa1377360-mRNA-1:exon:5632;Parent=Msa1377360-mRNA-1 |
| tig0019900 | exon | 95963 | 96114 | 95963 | ID=Msa1377360-mRNA-1:exon:5631;Parent=Msa1377360-mRNA-1 |
| tig0019900 | exon | 95381 | 95747 | 95381 | ID=Msa1377360-mRNA-1:exon:5630;Parent=Msa1377360-mRNA-1 |
| tig0019900 | exon | 94361 | 94516 | 94361 | ID=Msa1377360-mRNA-1:exon:5629;Parent=Msa1377360-mRNA-1 |
| tig0019900 | CDS | 99402 | 99890 | 99402 | ID=Msa1377360-mRNA-1:cds;Parent=Msa1377360-mRNA-1 |
| tig0019900 | CDS | 95963 | 96114 | 95963 | ID=Msa1377360-mRNA-1:cds;Parent=Msa1377360-mRNA-1 |
| tig0019900 | CDS | 95381 | 95747 | 95381 | ID=Msa1377360-mRNA-1:cds;Parent=Msa1377360-mRNA-1 |
| tig0019900 | CDS | 94361 | 94516 | 94361 | ID=Msa1377360-mRNA-1:cds;Parent=Msa1377360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
