Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126730 | sp|O04161|AMT12_SOLLC | 76.893 | 515 | 114 | 3 | 2 | 514 | 3 | 514 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126730 | G7I667 | 98.073 | 519 | 10 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1031 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126730 | Msa0126750 | 0.932892 | 4.300705e-95 | -8.615850e-47 |
| Msa0126730 | Msa0881530 | 0.822660 | 2.103622e-53 | -8.615850e-47 |
| Msa0126730 | Msa0911190 | 0.800353 | 1.500092e-48 | -8.615850e-47 |
| Msa0126730 | Msa0925100 | 0.812675 | 3.762995e-51 | -8.615850e-47 |
| Msa0126730 | Msa0982090 | 0.820975 | 5.163445e-53 | -8.615850e-47 |
| Msa0126730 | Msa1086740 | 0.802500 | 5.448019e-49 | -8.615850e-47 |
| Msa0126730 | Msa1086960 | 0.800565 | 1.357829e-48 | -8.615850e-47 |
| Msa0126730 | Msa1354500 | 0.815614 | 8.449045e-52 | -8.615850e-47 |
| Msa0126730 | Msa1354760 | 0.816079 | 6.653819e-52 | -8.615850e-47 |
| Msa0126730 | Msa1377360 | 0.811219 | 7.811413e-51 | -8.615850e-47 |
| Msa0126730 | Msa1382380 | 0.817034 | 4.065604e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126730 | MtrunA17_Chr1g0189971 | 98.073 | 519 | 10 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1031 |
| Msa0126730 | MtrunA17_Chr1g0168631 | 73.281 | 509 | 124 | 5 | 1 | 506 | 1 | 500 | 0.0 | 744 |
| Msa0126730 | MtrunA17_Chr7g0262361 | 72.912 | 491 | 127 | 3 | 1 | 489 | 1 | 487 | 0.0 | 721 |
| Msa0126730 | MtrunA17_Chr7g0272721 | 71.984 | 489 | 131 | 3 | 1 | 487 | 1 | 485 | 0.0 | 709 |
| Msa0126730 | MtrunA17_Chr3g0104661 | 67.038 | 449 | 137 | 4 | 40 | 484 | 7 | 448 | 0.0 | 596 |
| Msa0126730 | MtrunA17_Chr7g0274111 | 28.866 | 388 | 216 | 15 | 112 | 479 | 100 | 447 | 2.37e-25 | 108 |
| Msa0126730 | MtrunA17_Chr1g0163571 | 25.641 | 468 | 277 | 17 | 47 | 484 | 24 | 450 | 4.22e-21 | 96.3 |
| Msa0126730 | MtrunA17_Chr7g0243071 | 26.667 | 495 | 292 | 15 | 47 | 507 | 22 | 479 | 2.49e-17 | 84.7 |
| Msa0126730 | MtrunA17_Chr8g0385081 | 25.159 | 473 | 289 | 12 | 47 | 487 | 29 | 468 | 4.58e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126730 | AT1G64780.1 | 76.834 | 518 | 103 | 6 | 2 | 513 | 4 | 510 | 0.0 | 786 |
| Msa0126730 | AT4G13510.1 | 74.319 | 514 | 116 | 7 | 4 | 514 | 1 | 501 | 0.0 | 763 |
| Msa0126730 | AT3G24300.1 | 73.123 | 506 | 119 | 4 | 3 | 506 | 4 | 494 | 0.0 | 744 |
| Msa0126730 | AT3G24290.1 | 74.948 | 483 | 112 | 4 | 3 | 483 | 4 | 479 | 0.0 | 725 |
| Msa0126730 | AT4G28700.1 | 73.535 | 495 | 122 | 5 | 2 | 489 | 3 | 495 | 0.0 | 704 |
| Msa0126730 | AT2G38290.1 | 26.078 | 464 | 288 | 13 | 47 | 488 | 20 | 450 | 7.78e-22 | 99.0 |
| Msa0126730 | AT2G38290.2 | 26.870 | 361 | 224 | 10 | 135 | 488 | 7 | 334 | 2.41e-19 | 90.1 |
Find 197 sgRNAs with CRISPR-Local
Find 442 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTATGTTGATGAGATTTA+TGG | 0.173966 | 1_3:-55832247 | Msa0126730:CDS |
| GACGAGTCTATTAGAAAATT+AGG | 0.214176 | 1_3:-55831998 | Msa0126730:CDS |
| TTTGATTGGGCTTAATAAAT+TGG | 0.218891 | 1_3:-55832368 | Msa0126730:CDS |
| GCTTAATAAATTGGCGATTA+AGG | 0.220724 | 1_3:-55832359 | Msa0126730:CDS |
| GGCCTCTCCTACTATCTATT+TGG | 0.247116 | 1_3:-55833165 | Msa0126730:CDS |
| TAGAAAATTAGGGTTTATAA+TGG | 0.261122 | 1_3:-55831987 | Msa0126730:CDS |
| TTTGGCTTTGCTTTCGCCTT+TGG | 0.288902 | 1_3:-55833147 | Msa0126730:CDS |
| GTTATTGACTTTGCCGGTTC+AGG | 0.294088 | 1_3:-55832841 | Msa0126730:CDS |
| GGGTGGAATAGCAGGGTTAT+GGG | 0.296463 | 1_3:-55832803 | Msa0126730:CDS |
| CGGTCGAACCGCCCTATTCT+AGG | 0.319056 | 1_3:+55832763 | None:intergenic |
| TCCGGTGTTATTGACTTTGC+CGG | 0.323221 | 1_3:-55832847 | Msa0126730:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.333213 | 1_3:-55832589 | Msa0126730:CDS |
| CATGGAGGGTGTGGCGCATG+GGG | 0.336811 | 1_3:-55832301 | Msa0126730:CDS |
| AAGGGATTACCCTTCACCTT+CGG | 0.337397 | 1_3:-55833082 | Msa0126730:CDS |
| GTTGAGGTGTTGGTTATTTG+TGG | 0.337506 | 1_3:-55832163 | Msa0126730:CDS |
| AGGGAGGTTGTTTGCGGCGC+AGG | 0.338172 | 1_3:-55832188 | Msa0126730:CDS |
| AGGGATTACCCTTCACCTTC+GGG | 0.348884 | 1_3:-55833081 | Msa0126730:CDS |
| TGTAACTGCGCAGCCTCTAA+TGG | 0.349677 | 1_3:+55832322 | None:intergenic |
| ACGAGTCTATTAGAAAATTA+GGG | 0.351446 | 1_3:-55831997 | Msa0126730:CDS |
| CCATCGTTTCGCATTGGGTT+TGG | 0.355981 | 1_3:-55832924 | Msa0126730:CDS |
| TGGGTGGAATAGCAGGGTTA+TGG | 0.364706 | 1_3:-55832804 | Msa0126730:CDS |
| TAGCGCGTCGTTGGTGGTGT+TGG | 0.373610 | 1_3:-55832710 | Msa0126730:CDS |
| TTCAGTAAACGGTTATTAGT+TGG | 0.374456 | 1_3:-55832511 | Msa0126730:CDS |
| GGATTGTTGATGGGTGGTGG+AGG | 0.374838 | 1_3:-55832208 | Msa0126730:CDS |
| TTGCGGTGGTGGTGAGGAGT+GGG | 0.375025 | 1_3:+55833406 | None:intergenic |
| TGCAACGGCGGTTGCGTTTG+CGG | 0.376248 | 1_3:+55833389 | None:intergenic |
| AGTATGTTGATGAGATTTAT+GGG | 0.378337 | 1_3:-55832246 | Msa0126730:CDS |
| GGCGGTTGCGTTTGCGGTGG+TGG | 0.380612 | 1_3:+55833395 | None:intergenic |
| TGGTGGTGAGGAGTGGGGCT+AGG | 0.382794 | 1_3:+55833412 | None:intergenic |
| ATTTGAGATGGTGTTGAATT+GGG | 0.384973 | 1_3:+55833353 | None:intergenic |
| TTACCCCATCGTTTCGCATT+GGG | 0.385239 | 1_3:-55832929 | Msa0126730:CDS |
| TACATGGAGGGTGTGGCGCA+TGG | 0.387722 | 1_3:-55832303 | Msa0126730:CDS |
| CATATGGTGGGTGGAATAGC+AGG | 0.390140 | 1_3:-55832811 | Msa0126730:CDS |
| TAACAACTTTGTTCAGTAAA+CGG | 0.393569 | 1_3:-55832522 | Msa0126730:CDS |
| TTTATAGAAGGTCCTAGAAT+AGG | 0.393823 | 1_3:-55832775 | Msa0126730:CDS |
| ACATGGAGGGTGTGGCGCAT+GGG | 0.393900 | 1_3:-55832302 | Msa0126730:CDS |
| TATTTGAGATGGTGTTGAAT+TGG | 0.400022 | 1_3:+55833352 | None:intergenic |
| GGTTTGGTCTGCCGATGGTT+GGG | 0.403385 | 1_3:-55832908 | Msa0126730:CDS |
| GACGTGTGTAACGGTTTACT+TGG | 0.403746 | 1_3:-55832472 | Msa0126730:CDS |
| TTGAGGTGTTGGTTATTTGT+GGG | 0.404299 | 1_3:-55832162 | Msa0126730:CDS |
| AGTAACAAAAGGAATTATTA+TGG | 0.405005 | 1_3:-55832607 | Msa0126730:CDS |
| ATGGAGGGTGTGGCGCATGG+GGG | 0.414560 | 1_3:-55832300 | Msa0126730:CDS |
| CATATGAACCACACCTGAAC+CGG | 0.418279 | 1_3:+55832828 | None:intergenic |
| AGAAAATTAGGGTTTATAAT+GGG | 0.422404 | 1_3:-55831986 | Msa0126730:CDS |
| AAAAGAAGAATATATGAGAT+AGG | 0.425528 | 1_3:+55832966 | None:intergenic |
| CGGTTCAGGTGTGGTTCATA+TGG | 0.426879 | 1_3:-55832827 | Msa0126730:CDS |
| AGGTGTTGGTTATTTGTGGG+TGG | 0.427283 | 1_3:-55832159 | Msa0126730:CDS |
| CATCACCATCGGTTCGCGTT+GGG | 0.427874 | 1_3:+55832881 | None:intergenic |
| ATGCAACAGACCGGCCTGTC+CGG | 0.429149 | 1_3:+55832743 | None:intergenic |
| AGCGCGTCGTTGGTGGTGTT+GGG | 0.430363 | 1_3:-55832709 | Msa0126730:CDS |
| GGTGGAATAGCAGGGTTATG+GGG | 0.430789 | 1_3:-55832802 | Msa0126730:CDS |
| TGGAGGGTGTGGCGCATGGG+GGG | 0.430816 | 1_3:-55832299 | Msa0126730:CDS |
| TGGAGTGCTATTGGAAGAAC+AGG | 0.430989 | 1_3:-55832580 | Msa0126730:CDS |
| ACCATCGGTTCGCGTTGGGC+TGG | 0.431435 | 1_3:+55832885 | None:intergenic |
| GGTGTTGGTTATTTGTGGGT+GGG | 0.433759 | 1_3:-55832158 | Msa0126730:CDS |
| AAAGGAATTATTATGGTCAA+TGG | 0.435762 | 1_3:-55832600 | Msa0126730:CDS |
| TTATTATGGTTCGGTTGGTA+CGG | 0.437301 | 1_3:-55832679 | Msa0126730:CDS |
| TGTTGATGGGTGGTGGAGGG+AGG | 0.437827 | 1_3:-55832204 | Msa0126730:CDS |
| CAGCGATGGCGAAGGCCCAT+TGG | 0.442094 | 1_3:+55833037 | None:intergenic |
| GAGGCCGTATGGATTGTTGA+TGG | 0.450015 | 1_3:-55832218 | Msa0126730:CDS |
| GGCGCAGGTGGTTGAGGTGT+TGG | 0.450580 | 1_3:-55832173 | Msa0126730:CDS |
| TATTATGGTTCGGTTGGTAC+GGG | 0.453308 | 1_3:-55832678 | Msa0126730:CDS |
| CACACTGAAGGTGCACTGAT+TGG | 0.453333 | 1_3:+55831905 | None:intergenic |
| TTTACCCCATCGTTTCGCAT+TGG | 0.453403 | 1_3:-55832930 | Msa0126730:CDS |
| GGTTTCGCCATGCTCTGCGC+AGG | 0.454596 | 1_3:-55833252 | Msa0126730:CDS |
| TTATAGAAGGTCCTAGAATA+GGG | 0.458590 | 1_3:-55832774 | Msa0126730:CDS |
| GCCTTCGCCATCGCTGCTGC+CGG | 0.459814 | 1_3:-55833030 | Msa0126730:CDS |
| TGCAGAGAGAACTCAATTTG+TGG | 0.460728 | 1_3:-55832989 | Msa0126730:CDS |
| GATTGTTGATGGGTGGTGGA+GGG | 0.464090 | 1_3:-55832207 | Msa0126730:CDS |
| GGGTTTGGTCTGCCGATGGT+TGG | 0.467295 | 1_3:-55832909 | Msa0126730:CDS |
| GTGGAATAGCAGGGTTATGG+GGG | 0.470399 | 1_3:-55832801 | Msa0126730:CDS |
| GTTTGCGGCGCAGGTGGTTG+AGG | 0.472995 | 1_3:-55832179 | Msa0126730:CDS |
| TGGTGGAGGGAGGTTGTTTG+CGG | 0.475634 | 1_3:-55832194 | Msa0126730:CDS |
| CTAAATAAGCTGAGAAGAGA+AGG | 0.476158 | 1_3:+55833292 | None:intergenic |
| GTGTGGGTTTGTTGCGGCGT+GGG | 0.479169 | 1_3:-55832392 | Msa0126730:CDS |
| GTTGTTCTGTTGTGGAACCA+TGG | 0.481083 | 1_3:-55832426 | Msa0126730:CDS |
| GCACCCTCCAACGGCTTCAT+CGG | 0.481165 | 1_3:-55833123 | Msa0126730:CDS |
| GTTGATGAGATTTATGGGAC+TGG | 0.485633 | 1_3:-55832241 | Msa0126730:CDS |
| CTAGAATAGGGCGGTTCGAC+CGG | 0.487260 | 1_3:-55832762 | Msa0126730:CDS |
| AACGATGGGGTAAACAAAAC+CGG | 0.487884 | 1_3:+55832939 | None:intergenic |
| CGTTGGGCTGGCCCAACCAT+CGG | 0.489504 | 1_3:+55832897 | None:intergenic |
| TTAGAGGCTGCGCAGTTACA+TGG | 0.489763 | 1_3:-55832319 | Msa0126730:CDS |
| GTCGCTGAGTTTATTTGAGA+TGG | 0.491035 | 1_3:+55833341 | None:intergenic |
| TTTACGGGATTGTTTGCAAA+GGG | 0.491383 | 1_3:-55832271 | Msa0126730:CDS |
| GAAGTATGATGATCCATTAG+AGG | 0.491623 | 1_3:-55832335 | Msa0126730:CDS |
| GAGGAGTGGGGCTAGGTCTG+TGG | 0.495166 | 1_3:+55833419 | None:intergenic |
| TTTGCGGTGGTGGTGAGGAG+TGG | 0.496837 | 1_3:+55833405 | None:intergenic |
| ACAGCTTCTTTCTCTACCAA+TGG | 0.497981 | 1_3:-55833053 | Msa0126730:CDS |
| GCCGTTGGAGGGTGCTCCAA+AGG | 0.499692 | 1_3:+55833131 | None:intergenic |
| TGTATCGTGTCCGGTGGCAG+AGG | 0.501134 | 1_3:+55831934 | None:intergenic |
| GGTGTCACAACGACATTGGC+TGG | 0.502440 | 1_3:-55832559 | Msa0126730:CDS |
| CCATGGGCCGCGATTGTGTG+TGG | 0.504024 | 1_3:-55832409 | Msa0126730:CDS |
| ATTGGTGAGCATGATGTTCA+TGG | 0.505916 | 1_3:+55833209 | None:intergenic |
| CATTGGGTTTGGTCTGCCGA+TGG | 0.506434 | 1_3:-55832913 | Msa0126730:CDS |
| TATGGATTGTTGATGGGTGG+TGG | 0.508513 | 1_3:-55832211 | Msa0126730:CDS |
| GAGGTTGTTTGCGGCGCAGG+TGG | 0.508529 | 1_3:-55832185 | Msa0126730:CDS |
| GAAAGGACATAGCGCGTCGT+TGG | 0.508596 | 1_3:-55832719 | Msa0126730:CDS |
| TCGAGGGATGATGAGACTGC+AGG | 0.509046 | 1_3:-55832076 | Msa0126730:CDS |
| AGCAAAGCCAAATAGATAGT+AGG | 0.509496 | 1_3:+55833158 | None:intergenic |
| TACGGGATTGTTTGCAAAGG+GGG | 0.512801 | 1_3:-55832269 | Msa0126730:CDS |
| GTGTGTAACGGTTTACTTGG+CGG | 0.514764 | 1_3:-55832469 | Msa0126730:CDS |
| AACGGAGCCTGCGCAGAGCA+TGG | 0.515746 | 1_3:+55833245 | None:intergenic |
| CAGCTTCTTTCTCTACCAAT+GGG | 0.516999 | 1_3:-55833052 | Msa0126730:CDS |
| AACTGCAGGTTGTTCTGTTG+TGG | 0.517299 | 1_3:-55832434 | Msa0126730:CDS |
| ATGGAAATATGAGTAACAAA+AGG | 0.518100 | 1_3:-55832618 | Msa0126730:CDS |
| GGCCGGTCTGTTGCATTGAA+AGG | 0.519192 | 1_3:-55832736 | Msa0126730:CDS |
| AACGGTTATTAGTTGGACAT+TGG | 0.524741 | 1_3:-55832504 | Msa0126730:CDS |
| TTGATGAGATTTATGGGACT+GGG | 0.529833 | 1_3:-55832240 | Msa0126730:CDS |
| TATGGGACTGGGAGGCCGTA+TGG | 0.530379 | 1_3:-55832229 | Msa0126730:CDS |
| AATGTCCTCGACGCTGCAGC+CGG | 0.530902 | 1_3:-55833189 | Msa0126730:CDS |
| TTCAGGTGTGGTTCATATGG+TGG | 0.531681 | 1_3:-55832824 | Msa0126730:CDS |
| AGGCCGTATGGATTGTTGAT+GGG | 0.540097 | 1_3:-55832217 | Msa0126730:CDS |
| GCCTTTGGAGCACCCTCCAA+CGG | 0.540428 | 1_3:-55833132 | Msa0126730:CDS |
| ATAGGGCGGTTCGACCGGAC+AGG | 0.541559 | 1_3:-55832757 | Msa0126730:CDS |
| GGCGGTTCGACCGGACAGGC+CGG | 0.542744 | 1_3:-55832753 | Msa0126730:CDS |
| GCGCAGTTACATGGAGGGTG+TGG | 0.544442 | 1_3:-55832310 | Msa0126730:CDS |
| CGACCGATGAAGCCGTTGGA+GGG | 0.547327 | 1_3:+55833120 | None:intergenic |
| ACATCACCATCGGTTCGCGT+TGG | 0.547798 | 1_3:+55832880 | None:intergenic |
| CTGTAGTCACCCGAAGGTGA+AGG | 0.551464 | 1_3:+55833072 | None:intergenic |
| TCAGGTGTGGTTCATATGGT+GGG | 0.551811 | 1_3:-55832823 | Msa0126730:CDS |
| GAGGGAGACACACTCGTGGC+CGG | 0.551918 | 1_3:+55831953 | None:intergenic |
| GTCCTCGACGCTGCAGCCGG+TGG | 0.554837 | 1_3:-55833186 | Msa0126730:CDS |
| AGGACATAGCGCGTCGTTGG+TGG | 0.555347 | 1_3:-55832716 | Msa0126730:CDS |
| AGTGTGTCTCCCTCTGCCAC+CGG | 0.555628 | 1_3:-55831944 | Msa0126730:CDS |
| TGGCACCGGTGTATCGTGTC+CGG | 0.556207 | 1_3:+55831925 | None:intergenic |
| GCCAGCCCAACGCGAACCGA+TGG | 0.556829 | 1_3:-55832886 | Msa0126730:CDS |
| AATGGAGCCACTAGTGATAC+CGG | 0.557459 | 1_3:+55833011 | None:intergenic |
| GCATAGGTAGTCTGCAACGG+CGG | 0.557659 | 1_3:+55833377 | None:intergenic |
| GGATGATGAGACTGCAGGGA+TGG | 0.557751 | 1_3:-55832071 | Msa0126730:CDS |
| GGTTGGTACGGGTTCAACCC+CGG | 0.559497 | 1_3:-55832667 | Msa0126730:CDS |
| GTTTACGGGATTGTTTGCAA+AGG | 0.562175 | 1_3:-55832272 | Msa0126730:CDS |
| AAATTGAGTTCTCTCTGCAA+TGG | 0.563390 | 1_3:+55832993 | None:intergenic |
| TATAATGGGTAGGATTGAGC+CGG | 0.563586 | 1_3:-55831972 | Msa0126730:CDS |
| TGGAATAGCAGGGTTATGGG+GGG | 0.563952 | 1_3:-55832800 | Msa0126730:CDS |
| ACCGGCAGCAGCGATGGCGA+AGG | 0.564745 | 1_3:+55833029 | None:intergenic |
| ATAAGCTGAGAAGAGAAGGT+AGG | 0.565446 | 1_3:+55833296 | None:intergenic |
| TGAAATTGTTGAGGATATCG+AGG | 0.567161 | 1_3:-55832093 | Msa0126730:CDS |
| TTATTCAGCCCATAAAATAA+CGG | 0.567889 | 1_3:+55832118 | None:intergenic |
| CAAACCCAATGCGAAACGAT+GGG | 0.569510 | 1_3:+55832925 | None:intergenic |
| GTCCTTTCAATGCAACAGAC+CGG | 0.570037 | 1_3:+55832734 | None:intergenic |
| TGGTGTTGAATTGGGTGCAT+AGG | 0.570282 | 1_3:+55833361 | None:intergenic |
| TTAGTCTTTGCCATGCAGCT+CGG | 0.570620 | 1_3:-55833273 | Msa0126730:CDS |
| CATGGCGAAACCGAGCTGCA+TGG | 0.571462 | 1_3:+55833263 | None:intergenic |
| GCGACCGATGAAGCCGTTGG+AGG | 0.572584 | 1_3:+55833119 | None:intergenic |
| AGTGATACCGGCAGCAGCGA+TGG | 0.573055 | 1_3:+55833023 | None:intergenic |
| AATTAGGGTTTATAATGGGT+AGG | 0.573884 | 1_3:-55831982 | Msa0126730:CDS |
| GGCTGCAGCGTCGAGGACAT+TGG | 0.575668 | 1_3:+55833191 | None:intergenic |
| TTGTTCTGTTGTGGAACCAT+GGG | 0.576456 | 1_3:-55832425 | Msa0126730:CDS |
| CCAAACCCAATGCGAAACGA+TGG | 0.576636 | 1_3:+55832924 | None:intergenic |
| GTATCGTGTCCGGTGGCAGA+GGG | 0.577389 | 1_3:+55831935 | None:intergenic |
| TGACTTTGCCGGTTCAGGTG+TGG | 0.579151 | 1_3:-55832836 | Msa0126730:CDS |
| TGTAGTCACCCGAAGGTGAA+GGG | 0.585601 | 1_3:+55833073 | None:intergenic |
| CATGGGCCGCGATTGTGTGT+GGG | 0.586850 | 1_3:-55832408 | Msa0126730:CDS |
| AACAGGTGTCACAACGACAT+TGG | 0.587078 | 1_3:-55832563 | Msa0126730:CDS |
| CCCAAATAAAACATCACCAT+CGG | 0.587790 | 1_3:+55832870 | None:intergenic |
| CGAGGGATGATGAGACTGCA+GGG | 0.589259 | 1_3:-55832075 | Msa0126730:CDS |
| AACGTGATTGACGTGTGTAA+CGG | 0.589583 | 1_3:-55832481 | Msa0126730:CDS |
| GTAGGTGTTGTCTATTGCAT+AGG | 0.590077 | 1_3:+55833314 | None:intergenic |
| TGAATAAGATGAAATTGTTG+AGG | 0.592343 | 1_3:-55832102 | Msa0126730:CDS |
| AACAAACCCACACACAATCG+CGG | 0.593035 | 1_3:+55832402 | None:intergenic |
| GGTGTTGTCTATTGCATAGG+TGG | 0.593690 | 1_3:+55833317 | None:intergenic |
| GGTGTGGTTCATATGGTGGG+TGG | 0.594553 | 1_3:-55832820 | Msa0126730:CDS |
| TTGCGTTTGCGGTGGTGGTG+AGG | 0.596669 | 1_3:+55833400 | None:intergenic |
| GTGGCGACCGATGAAGCCGT+TGG | 0.597188 | 1_3:+55833116 | None:intergenic |
| TGCGGTGGTGGTGAGGAGTG+GGG | 0.601876 | 1_3:+55833407 | None:intergenic |
| GCTGCTGCCGGTATCACTAG+TGG | 0.604144 | 1_3:-55833018 | Msa0126730:CDS |
| CCACCCATCAACAATCCATA+CGG | 0.604211 | 1_3:+55832214 | None:intergenic |
| CCACACACAATCGCGGCCCA+TGG | 0.607906 | 1_3:+55832409 | None:intergenic |
| AGCCAAATAGATAGTAGGAG+AGG | 0.608112 | 1_3:+55833163 | None:intergenic |
| CCGTATGGATTGTTGATGGG+TGG | 0.612064 | 1_3:-55832214 | Msa0126730:CDS |
| AAATAACGGCACCATTGTGA+CGG | 0.614051 | 1_3:+55832132 | None:intergenic |
| TGTGTGGGTTTGTTGCGGCG+TGG | 0.623345 | 1_3:-55832393 | Msa0126730:CDS |
| GATTGTGTGTGGGTTTGTTG+CGG | 0.627273 | 1_3:-55832398 | Msa0126730:CDS |
| TGCCACCGGACACGATACAC+CGG | 0.628233 | 1_3:-55831930 | Msa0126730:CDS |
| CACCGGTGTATCGTGTCCGG+TGG | 0.628689 | 1_3:+55831928 | None:intergenic |
| TGGACTTGACAAGACATGGT+GGG | 0.630540 | 1_3:-55832051 | Msa0126730:CDS |
| GGTGCATAGGTAGTCTGCAA+CGG | 0.633576 | 1_3:+55833374 | None:intergenic |
| GAAATTGTTGAGGATATCGA+GGG | 0.633706 | 1_3:-55832092 | Msa0126730:CDS |
| AACGGCGGTTGCGTTTGCGG+TGG | 0.642746 | 1_3:+55833392 | None:intergenic |
| TGCTTATGCGTATCATGACG+AGG | 0.643185 | 1_3:-55832026 | Msa0126730:CDS |
| GAAGGTGCACTGATTGGCAC+CGG | 0.646404 | 1_3:+55831911 | None:intergenic |
| GGCCACCGGCTGCAGCGTCG+AGG | 0.648352 | 1_3:+55833184 | None:intergenic |
| AGGCTGCGCAGTTACATGGA+GGG | 0.651007 | 1_3:-55832315 | Msa0126730:CDS |
| TAGATAGTAGGAGAGGCCAC+CGG | 0.654386 | 1_3:+55833170 | None:intergenic |
| AAGAAGCTGTAGTCACCCGA+AGG | 0.668205 | 1_3:+55833066 | None:intergenic |
| ACCGGCAAAGTCAATAACAC+CGG | 0.670560 | 1_3:+55832846 | None:intergenic |
| TGGGTGGGTTACCGTCACAA+TGG | 0.675313 | 1_3:-55832143 | Msa0126730:CDS |
| GAGGCTGCGCAGTTACATGG+AGG | 0.678595 | 1_3:-55832316 | Msa0126730:CDS |
| AAACCCAATGCGAAACGATG+GGG | 0.679819 | 1_3:+55832926 | None:intergenic |
| TCGTGATGATATCACACTGA+AGG | 0.680385 | 1_3:+55831893 | None:intergenic |
| TAGAAGGTCCTAGAATAGGG+CGG | 0.681945 | 1_3:-55832771 | Msa0126730:CDS |
| ATGAGATTTATGGGACTGGG+AGG | 0.684020 | 1_3:-55832237 | Msa0126730:CDS |
| GGCAGAGGGAGACACACTCG+TGG | 0.689003 | 1_3:+55831949 | None:intergenic |
| GGGATGGACTTGACAAGACA+TGG | 0.693032 | 1_3:-55832055 | Msa0126730:CDS |
| ATGGACTTGACAAGACATGG+TGG | 0.696140 | 1_3:-55832052 | Msa0126730:CDS |
| ATATGGTGGGTGGAATAGCA+GGG | 0.697371 | 1_3:-55832810 | Msa0126730:CDS |
| TTACGGGATTGTTTGCAAAG+GGG | 0.721445 | 1_3:-55832270 | Msa0126730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTCTTCTTTTTTAAC+CGG | - | chr1_3:55832387-55832406 | Msa0126730:CDS | 15.0% |
| !!! | ATATATTCTTCTTTTTTAAC+CGG | - | chr1_3:55832387-55832406 | Msa0126730:CDS | 15.0% |
| !! | AAAAGAAGAATATATGAGAT+AGG | + | chr1_3:55832382-55832401 | None:intergenic | 20.0% |
| !! | AGTAACAAAAGGAATTATTA+TGG | - | chr1_3:55832738-55832757 | Msa0126730:CDS | 20.0% |
| !! | TAGAAAATTAGGGTTTATAA+TGG | - | chr1_3:55833358-55833377 | Msa0126730:CDS | 20.0% |
| !! | AGAAAATTAGGGTTTATAAT+GGG | - | chr1_3:55833359-55833378 | Msa0126730:CDS | 20.0% |
| !! | AAAAGAAGAATATATGAGAT+AGG | + | chr1_3:55832382-55832401 | None:intergenic | 20.0% |
| !! | AGTAACAAAAGGAATTATTA+TGG | - | chr1_3:55832738-55832757 | Msa0126730:CDS | 20.0% |
| !! | TAGAAAATTAGGGTTTATAA+TGG | - | chr1_3:55833358-55833377 | Msa0126730:CDS | 20.0% |
| !! | AGAAAATTAGGGTTTATAAT+GGG | - | chr1_3:55833359-55833378 | Msa0126730:CDS | 20.0% |
| !!! | TGTTGGGTTCTTTTTTATTA+TGG | - | chr1_3:55832652-55832671 | Msa0126730:CDS | 25.0% |
| !!! | GGTTCTTTTTTATTATGGTT+CGG | - | chr1_3:55832657-55832676 | Msa0126730:CDS | 25.0% |
| ! | TGCAATTGTTAAAAATGAAC+CGG | + | chr1_3:55832700-55832719 | None:intergenic | 25.0% |
| ! | TTAACAATTGCAAAAAGCTA+TGG | - | chr1_3:55832708-55832727 | Msa0126730:CDS | 25.0% |
| ! | ATGGAAATATGAGTAACAAA+AGG | - | chr1_3:55832727-55832746 | Msa0126730:CDS | 25.0% |
| ! | AAAGGAATTATTATGGTCAA+TGG | - | chr1_3:55832745-55832764 | Msa0126730:CDS | 25.0% |
| ! | TAACAACTTTGTTCAGTAAA+CGG | - | chr1_3:55832823-55832842 | Msa0126730:CDS | 25.0% |
| ! | TTTGATTGGGCTTAATAAAT+TGG | - | chr1_3:55832977-55832996 | Msa0126730:CDS | 25.0% |
| !! | AGTATGTTGATGAGATTTAT+GGG | - | chr1_3:55833099-55833118 | Msa0126730:CDS | 25.0% |
| ! | TTATTCAGCCCATAAAATAA+CGG | + | chr1_3:55833230-55833249 | None:intergenic | 25.0% |
| ! | TGAATAAGATGAAATTGTTG+AGG | - | chr1_3:55833243-55833262 | Msa0126730:CDS | 25.0% |
| ! | ACGAGTCTATTAGAAAATTA+GGG | - | chr1_3:55833348-55833367 | Msa0126730:CDS | 25.0% |
| !!! | TGTTGGGTTCTTTTTTATTA+TGG | - | chr1_3:55832652-55832671 | Msa0126730:CDS | 25.0% |
| !!! | GGTTCTTTTTTATTATGGTT+CGG | - | chr1_3:55832657-55832676 | Msa0126730:CDS | 25.0% |
| ! | TGCAATTGTTAAAAATGAAC+CGG | + | chr1_3:55832700-55832719 | None:intergenic | 25.0% |
| ! | TTAACAATTGCAAAAAGCTA+TGG | - | chr1_3:55832708-55832727 | Msa0126730:CDS | 25.0% |
| ! | ATGGAAATATGAGTAACAAA+AGG | - | chr1_3:55832727-55832746 | Msa0126730:CDS | 25.0% |
| ! | AAAGGAATTATTATGGTCAA+TGG | - | chr1_3:55832745-55832764 | Msa0126730:CDS | 25.0% |
| ! | TAACAACTTTGTTCAGTAAA+CGG | - | chr1_3:55832823-55832842 | Msa0126730:CDS | 25.0% |
| ! | TTTGATTGGGCTTAATAAAT+TGG | - | chr1_3:55832977-55832996 | Msa0126730:CDS | 25.0% |
| !! | AGTATGTTGATGAGATTTAT+GGG | - | chr1_3:55833099-55833118 | Msa0126730:CDS | 25.0% |
| ! | TTATTCAGCCCATAAAATAA+CGG | + | chr1_3:55833230-55833249 | None:intergenic | 25.0% |
| ! | TGAATAAGATGAAATTGTTG+AGG | - | chr1_3:55833243-55833262 | Msa0126730:CDS | 25.0% |
| ! | ACGAGTCTATTAGAAAATTA+GGG | - | chr1_3:55833348-55833367 | Msa0126730:CDS | 25.0% |
| ! | ATTTGAGATGGTGTTGAATT+GGG | + | chr1_3:55831995-55832014 | None:intergenic | 30.0% |
| ! | TATTTGAGATGGTGTTGAAT+TGG | + | chr1_3:55831996-55832015 | None:intergenic | 30.0% |
| TTTATAGAAGGTCCTAGAAT+AGG | - | chr1_3:55832570-55832589 | Msa0126730:CDS | 30.0% | |
| TTATAGAAGGTCCTAGAATA+GGG | - | chr1_3:55832571-55832590 | Msa0126730:CDS | 30.0% | |
| !!! | CTTTTTTATTATGGTTCGGT+TGG | - | chr1_3:55832661-55832680 | Msa0126730:CDS | 30.0% |
| CAATTGTTAAAAATGAACCG+GGG | + | chr1_3:55832698-55832717 | None:intergenic | 30.0% | |
| GCAATTGTTAAAAATGAACC+GGG | + | chr1_3:55832699-55832718 | None:intergenic | 30.0% | |
| TTCAGTAAACGGTTATTAGT+TGG | - | chr1_3:55832834-55832853 | Msa0126730:CDS | 30.0% | |
| GCTTAATAAATTGGCGATTA+AGG | - | chr1_3:55832986-55833005 | Msa0126730:CDS | 30.0% | |
| ! | GAGTATGTTGATGAGATTTA+TGG | - | chr1_3:55833098-55833117 | Msa0126730:CDS | 30.0% |
| GACGAGTCTATTAGAAAATT+AGG | - | chr1_3:55833347-55833366 | Msa0126730:CDS | 30.0% | |
| !! | AATTAGGGTTTATAATGGGT+AGG | - | chr1_3:55833363-55833382 | Msa0126730:CDS | 30.0% |
| ! | ATTTGAGATGGTGTTGAATT+GGG | + | chr1_3:55831995-55832014 | None:intergenic | 30.0% |
| ! | TATTTGAGATGGTGTTGAAT+TGG | + | chr1_3:55831996-55832015 | None:intergenic | 30.0% |
| TTTATAGAAGGTCCTAGAAT+AGG | - | chr1_3:55832570-55832589 | Msa0126730:CDS | 30.0% | |
| TTATAGAAGGTCCTAGAATA+GGG | - | chr1_3:55832571-55832590 | Msa0126730:CDS | 30.0% | |
| !!! | CTTTTTTATTATGGTTCGGT+TGG | - | chr1_3:55832661-55832680 | Msa0126730:CDS | 30.0% |
| CAATTGTTAAAAATGAACCG+GGG | + | chr1_3:55832698-55832717 | None:intergenic | 30.0% | |
| GCAATTGTTAAAAATGAACC+GGG | + | chr1_3:55832699-55832718 | None:intergenic | 30.0% | |
| TTCAGTAAACGGTTATTAGT+TGG | - | chr1_3:55832834-55832853 | Msa0126730:CDS | 30.0% | |
| GCTTAATAAATTGGCGATTA+AGG | - | chr1_3:55832986-55833005 | Msa0126730:CDS | 30.0% | |
| ! | GAGTATGTTGATGAGATTTA+TGG | - | chr1_3:55833098-55833117 | Msa0126730:CDS | 30.0% |
| GACGAGTCTATTAGAAAATT+AGG | - | chr1_3:55833347-55833366 | Msa0126730:CDS | 30.0% | |
| !! | AATTAGGGTTTATAATGGGT+AGG | - | chr1_3:55833363-55833382 | Msa0126730:CDS | 30.0% |
| CTAAATAAGCTGAGAAGAGA+AGG | + | chr1_3:55832056-55832075 | None:intergenic | 35.0% | |
| ! | CATGATGTTCATGGTGTTTT+TGG | + | chr1_3:55832130-55832149 | None:intergenic | 35.0% |
| AGCAAAGCCAAATAGATAGT+AGG | + | chr1_3:55832190-55832209 | None:intergenic | 35.0% | |
| AAATTGAGTTCTCTCTGCAA+TGG | + | chr1_3:55832355-55832374 | None:intergenic | 35.0% | |
| !! | ACCGATGGTGATGTTTTATT+TGG | - | chr1_3:55832474-55832493 | Msa0126730:CDS | 35.0% |
| CCCAAATAAAACATCACCAT+CGG | + | chr1_3:55832478-55832497 | None:intergenic | 35.0% | |
| !!! | CCGATGGTGATGTTTTATTT+GGG | - | chr1_3:55832475-55832494 | Msa0126730:CDS | 35.0% |
| !! | TTATTATGGTTCGGTTGGTA+CGG | - | chr1_3:55832666-55832685 | Msa0126730:CDS | 35.0% |
| AACGGTTATTAGTTGGACAT+TGG | - | chr1_3:55832841-55832860 | Msa0126730:CDS | 35.0% | |
| GAAGTATGATGATCCATTAG+AGG | - | chr1_3:55833010-55833029 | Msa0126730:CDS | 35.0% | |
| TTTACGGGATTGTTTGCAAA+GGG | - | chr1_3:55833074-55833093 | Msa0126730:CDS | 35.0% | |
| TTGATGAGATTTATGGGACT+GGG | - | chr1_3:55833105-55833124 | Msa0126730:CDS | 35.0% | |
| !! | TTGAGGTGTTGGTTATTTGT+GGG | - | chr1_3:55833183-55833202 | Msa0126730:CDS | 35.0% |
| !!! | ACAATGGTGCCGTTATTTTA+TGG | - | chr1_3:55833218-55833237 | Msa0126730:CDS | 35.0% |
| !!! | CAATGGTGCCGTTATTTTAT+GGG | - | chr1_3:55833219-55833238 | Msa0126730:CDS | 35.0% |
| TGAAATTGTTGAGGATATCG+AGG | - | chr1_3:55833252-55833271 | Msa0126730:CDS | 35.0% | |
| GAAATTGTTGAGGATATCGA+GGG | - | chr1_3:55833253-55833272 | Msa0126730:CDS | 35.0% | |
| CTAAATAAGCTGAGAAGAGA+AGG | + | chr1_3:55832056-55832075 | None:intergenic | 35.0% | |
| ! | CATGATGTTCATGGTGTTTT+TGG | + | chr1_3:55832130-55832149 | None:intergenic | 35.0% |
| AGCAAAGCCAAATAGATAGT+AGG | + | chr1_3:55832190-55832209 | None:intergenic | 35.0% | |
| AAATTGAGTTCTCTCTGCAA+TGG | + | chr1_3:55832355-55832374 | None:intergenic | 35.0% | |
| !! | ACCGATGGTGATGTTTTATT+TGG | - | chr1_3:55832474-55832493 | Msa0126730:CDS | 35.0% |
| CCCAAATAAAACATCACCAT+CGG | + | chr1_3:55832478-55832497 | None:intergenic | 35.0% | |
| !!! | CCGATGGTGATGTTTTATTT+GGG | - | chr1_3:55832475-55832494 | Msa0126730:CDS | 35.0% |
| !! | TTATTATGGTTCGGTTGGTA+CGG | - | chr1_3:55832666-55832685 | Msa0126730:CDS | 35.0% |
| AACGGTTATTAGTTGGACAT+TGG | - | chr1_3:55832841-55832860 | Msa0126730:CDS | 35.0% | |
| GAAGTATGATGATCCATTAG+AGG | - | chr1_3:55833010-55833029 | Msa0126730:CDS | 35.0% | |
| TTTACGGGATTGTTTGCAAA+GGG | - | chr1_3:55833074-55833093 | Msa0126730:CDS | 35.0% | |
| TTGATGAGATTTATGGGACT+GGG | - | chr1_3:55833105-55833124 | Msa0126730:CDS | 35.0% | |
| !! | TTGAGGTGTTGGTTATTTGT+GGG | - | chr1_3:55833183-55833202 | Msa0126730:CDS | 35.0% |
| !!! | ACAATGGTGCCGTTATTTTA+TGG | - | chr1_3:55833218-55833237 | Msa0126730:CDS | 35.0% |
| !!! | CAATGGTGCCGTTATTTTAT+GGG | - | chr1_3:55833219-55833238 | Msa0126730:CDS | 35.0% |
| TGAAATTGTTGAGGATATCG+AGG | - | chr1_3:55833252-55833271 | Msa0126730:CDS | 35.0% | |
| GAAATTGTTGAGGATATCGA+GGG | - | chr1_3:55833253-55833272 | Msa0126730:CDS | 35.0% | |
| GTCGCTGAGTTTATTTGAGA+TGG | + | chr1_3:55832007-55832026 | None:intergenic | 40.0% | |
| ! | GTAGGTGTTGTCTATTGCAT+AGG | + | chr1_3:55832034-55832053 | None:intergenic | 40.0% |
| ATAAGCTGAGAAGAGAAGGT+AGG | + | chr1_3:55832052-55832071 | None:intergenic | 40.0% | |
| ATTGGTGAGCATGATGTTCA+TGG | + | chr1_3:55832139-55832158 | None:intergenic | 40.0% | |
| AGCCAAATAGATAGTAGGAG+AGG | + | chr1_3:55832185-55832204 | None:intergenic | 40.0% | |
| AATCCCTTAGACCGAAAAAG+TGG | + | chr1_3:55832251-55832270 | None:intergenic | 40.0% | |
| ACAGCTTCTTTCTCTACCAA+TGG | - | chr1_3:55832292-55832311 | Msa0126730:CDS | 40.0% | |
| CAGCTTCTTTCTCTACCAAT+GGG | - | chr1_3:55832293-55832312 | Msa0126730:CDS | 40.0% | |
| TGCAGAGAGAACTCAATTTG+TGG | - | chr1_3:55832356-55832375 | Msa0126730:CDS | 40.0% | |
| AACGATGGGGTAAACAAAAC+CGG | + | chr1_3:55832409-55832428 | None:intergenic | 40.0% | |
| !!! | GGTGATGTTTTATTTGGGTC+CGG | - | chr1_3:55832480-55832499 | Msa0126730:CDS | 40.0% |
| !! | TTATGGGGGGCATTTATAGA+AGG | - | chr1_3:55832558-55832577 | Msa0126730:CDS | 40.0% |
| !! | TATTATGGTTCGGTTGGTAC+GGG | - | chr1_3:55832667-55832686 | Msa0126730:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | - | chr1_3:55832756-55832775 | Msa0126730:CDS | 40.0% |
| AACGTGATTGACGTGTGTAA+CGG | - | chr1_3:55832864-55832883 | Msa0126730:CDS | 40.0% | |
| TTGTTCTGTTGTGGAACCAT+GGG | - | chr1_3:55832920-55832939 | Msa0126730:CDS | 40.0% | |
| GTTTACGGGATTGTTTGCAA+AGG | - | chr1_3:55833073-55833092 | Msa0126730:CDS | 40.0% | |
| TTACGGGATTGTTTGCAAAG+GGG | - | chr1_3:55833075-55833094 | Msa0126730:CDS | 40.0% | |
| ! | GTTGATGAGATTTATGGGAC+TGG | - | chr1_3:55833104-55833123 | Msa0126730:CDS | 40.0% |
| !! | GTTGAGGTGTTGGTTATTTG+TGG | - | chr1_3:55833182-55833201 | Msa0126730:CDS | 40.0% |
| AAATAACGGCACCATTGTGA+CGG | + | chr1_3:55833216-55833235 | None:intergenic | 40.0% | |
| !! | TATAATGGGTAGGATTGAGC+CGG | - | chr1_3:55833373-55833392 | Msa0126730:CDS | 40.0% |
| GTCGCTGAGTTTATTTGAGA+TGG | + | chr1_3:55832007-55832026 | None:intergenic | 40.0% | |
| ! | GTAGGTGTTGTCTATTGCAT+AGG | + | chr1_3:55832034-55832053 | None:intergenic | 40.0% |
| ATAAGCTGAGAAGAGAAGGT+AGG | + | chr1_3:55832052-55832071 | None:intergenic | 40.0% | |
| ATTGGTGAGCATGATGTTCA+TGG | + | chr1_3:55832139-55832158 | None:intergenic | 40.0% | |
| AGCCAAATAGATAGTAGGAG+AGG | + | chr1_3:55832185-55832204 | None:intergenic | 40.0% | |
| AATCCCTTAGACCGAAAAAG+TGG | + | chr1_3:55832251-55832270 | None:intergenic | 40.0% | |
| ACAGCTTCTTTCTCTACCAA+TGG | - | chr1_3:55832292-55832311 | Msa0126730:CDS | 40.0% | |
| CAGCTTCTTTCTCTACCAAT+GGG | - | chr1_3:55832293-55832312 | Msa0126730:CDS | 40.0% | |
| TGCAGAGAGAACTCAATTTG+TGG | - | chr1_3:55832356-55832375 | Msa0126730:CDS | 40.0% | |
| AACGATGGGGTAAACAAAAC+CGG | + | chr1_3:55832409-55832428 | None:intergenic | 40.0% | |
| !!! | GGTGATGTTTTATTTGGGTC+CGG | - | chr1_3:55832480-55832499 | Msa0126730:CDS | 40.0% |
| !! | TTATGGGGGGCATTTATAGA+AGG | - | chr1_3:55832558-55832577 | Msa0126730:CDS | 40.0% |
| !! | TATTATGGTTCGGTTGGTAC+GGG | - | chr1_3:55832667-55832686 | Msa0126730:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | - | chr1_3:55832756-55832775 | Msa0126730:CDS | 40.0% |
| AACGTGATTGACGTGTGTAA+CGG | - | chr1_3:55832864-55832883 | Msa0126730:CDS | 40.0% | |
| TTGTTCTGTTGTGGAACCAT+GGG | - | chr1_3:55832920-55832939 | Msa0126730:CDS | 40.0% | |
| GTTTACGGGATTGTTTGCAA+AGG | - | chr1_3:55833073-55833092 | Msa0126730:CDS | 40.0% | |
| TTACGGGATTGTTTGCAAAG+GGG | - | chr1_3:55833075-55833094 | Msa0126730:CDS | 40.0% | |
| ! | GTTGATGAGATTTATGGGAC+TGG | - | chr1_3:55833104-55833123 | Msa0126730:CDS | 40.0% |
| !! | GTTGAGGTGTTGGTTATTTG+TGG | - | chr1_3:55833182-55833201 | Msa0126730:CDS | 40.0% |
| AAATAACGGCACCATTGTGA+CGG | + | chr1_3:55833216-55833235 | None:intergenic | 40.0% | |
| !! | TATAATGGGTAGGATTGAGC+CGG | - | chr1_3:55833373-55833392 | Msa0126730:CDS | 40.0% |
| ! | TGGTGTTGAATTGGGTGCAT+AGG | + | chr1_3:55831987-55832006 | None:intergenic | 45.0% |
| ! | GGTGTTGTCTATTGCATAGG+TGG | + | chr1_3:55832031-55832050 | None:intergenic | 45.0% |
| ! | TTAGTCTTTGCCATGCAGCT+CGG | - | chr1_3:55832072-55832091 | Msa0126730:CDS | 45.0% |
| !!! | CATGGTGTTTTTGGCTCGAA+CGG | + | chr1_3:55832121-55832140 | None:intergenic | 45.0% |
| GGCCTCTCCTACTATCTATT+TGG | - | chr1_3:55832180-55832199 | Msa0126730:CDS | 45.0% | |
| !! | TTTGGCTTTGCTTTCGCCTT+TGG | - | chr1_3:55832198-55832217 | Msa0126730:CDS | 45.0% |
| !!! | TTCATCGGTCGCCACTTTTT+CGG | - | chr1_3:55832237-55832256 | Msa0126730:CDS | 45.0% |
| !!! | TCGCCACTTTTTCGGTCTAA+GGG | - | chr1_3:55832245-55832264 | Msa0126730:CDS | 45.0% |
| AAGGGATTACCCTTCACCTT+CGG | - | chr1_3:55832263-55832282 | Msa0126730:CDS | 45.0% | |
| AATGGAGCCACTAGTGATAC+CGG | + | chr1_3:55832337-55832356 | None:intergenic | 45.0% | |
| TTTACCCCATCGTTTCGCAT+TGG | - | chr1_3:55832415-55832434 | Msa0126730:CDS | 45.0% | |
| TTACCCCATCGTTTCGCATT+GGG | - | chr1_3:55832416-55832435 | Msa0126730:CDS | 45.0% | |
| AAACCCAATGCGAAACGATG+GGG | + | chr1_3:55832422-55832441 | None:intergenic | 45.0% | |
| CAAACCCAATGCGAAACGAT+GGG | + | chr1_3:55832423-55832442 | None:intergenic | 45.0% | |
| !! | TCCGGTGTTATTGACTTTGC+CGG | - | chr1_3:55832498-55832517 | Msa0126730:CDS | 45.0% |
| ACCGGCAAAGTCAATAACAC+CGG | + | chr1_3:55832502-55832521 | None:intergenic | 45.0% | |
| !! | GTTATTGACTTTGCCGGTTC+AGG | - | chr1_3:55832504-55832523 | Msa0126730:CDS | 45.0% |
| CATATGAACCACACCTGAAC+CGG | + | chr1_3:55832520-55832539 | None:intergenic | 45.0% | |
| TTCAGGTGTGGTTCATATGG+TGG | - | chr1_3:55832521-55832540 | Msa0126730:CDS | 45.0% | |
| TCAGGTGTGGTTCATATGGT+GGG | - | chr1_3:55832522-55832541 | Msa0126730:CDS | 45.0% | |
| !! | ATATGGTGGGTGGAATAGCA+GGG | - | chr1_3:55832535-55832554 | Msa0126730:CDS | 45.0% |
| TAGAAGGTCCTAGAATAGGG+CGG | - | chr1_3:55832574-55832593 | Msa0126730:CDS | 45.0% | |
| GTCCTTTCAATGCAACAGAC+CGG | + | chr1_3:55832614-55832633 | None:intergenic | 45.0% | |
| ! | TGGAGTGCTATTGGAAGAAC+AGG | - | chr1_3:55832765-55832784 | Msa0126730:CDS | 45.0% |
| ! | AACAGGTGTCACAACGACAT+TGG | - | chr1_3:55832782-55832801 | Msa0126730:CDS | 45.0% |
| GACGTGTGTAACGGTTTACT+TGG | - | chr1_3:55832873-55832892 | Msa0126730:CDS | 45.0% | |
| GTGTGTAACGGTTTACTTGG+CGG | - | chr1_3:55832876-55832895 | Msa0126730:CDS | 45.0% | |
| ! | GGTTTTGCTGCTATAACTGC+AGG | - | chr1_3:55832897-55832916 | Msa0126730:CDS | 45.0% |
| AACTGCAGGTTGTTCTGTTG+TGG | - | chr1_3:55832911-55832930 | Msa0126730:CDS | 45.0% | |
| GTTGTTCTGTTGTGGAACCA+TGG | - | chr1_3:55832919-55832938 | Msa0126730:CDS | 45.0% | |
| AACAAACCCACACACAATCG+CGG | + | chr1_3:55832946-55832965 | None:intergenic | 45.0% | |
| !! | GATTGTGTGTGGGTTTGTTG+CGG | - | chr1_3:55832947-55832966 | Msa0126730:CDS | 45.0% |
| TACGGGATTGTTTGCAAAGG+GGG | - | chr1_3:55833076-55833095 | Msa0126730:CDS | 45.0% | |
| ATGAGATTTATGGGACTGGG+AGG | - | chr1_3:55833108-55833127 | Msa0126730:CDS | 45.0% | |
| ! | AGGCCGTATGGATTGTTGAT+GGG | - | chr1_3:55833128-55833147 | Msa0126730:CDS | 45.0% |
| CCACCCATCAACAATCCATA+CGG | + | chr1_3:55833134-55833153 | None:intergenic | 45.0% | |
| ! | TATGGATTGTTGATGGGTGG+TGG | - | chr1_3:55833134-55833153 | Msa0126730:CDS | 45.0% |
| !! | AGGTGTTGGTTATTTGTGGG+TGG | - | chr1_3:55833186-55833205 | Msa0126730:CDS | 45.0% |
| !! | GGTGTTGGTTATTTGTGGGT+GGG | - | chr1_3:55833187-55833206 | Msa0126730:CDS | 45.0% |
| ATGGACTTGACAAGACATGG+TGG | - | chr1_3:55833293-55833312 | Msa0126730:CDS | 45.0% | |
| TGGACTTGACAAGACATGGT+GGG | - | chr1_3:55833294-55833313 | Msa0126730:CDS | 45.0% | |
| TGCTTATGCGTATCATGACG+AGG | - | chr1_3:55833319-55833338 | Msa0126730:CDS | 45.0% | |
| ! | TGGTGTTGAATTGGGTGCAT+AGG | + | chr1_3:55831987-55832006 | None:intergenic | 45.0% |
| ! | GGTGTTGTCTATTGCATAGG+TGG | + | chr1_3:55832031-55832050 | None:intergenic | 45.0% |
| ! | TTAGTCTTTGCCATGCAGCT+CGG | - | chr1_3:55832072-55832091 | Msa0126730:CDS | 45.0% |
| !!! | CATGGTGTTTTTGGCTCGAA+CGG | + | chr1_3:55832121-55832140 | None:intergenic | 45.0% |
| GGCCTCTCCTACTATCTATT+TGG | - | chr1_3:55832180-55832199 | Msa0126730:CDS | 45.0% | |
| !! | TTTGGCTTTGCTTTCGCCTT+TGG | - | chr1_3:55832198-55832217 | Msa0126730:CDS | 45.0% |
| !!! | TTCATCGGTCGCCACTTTTT+CGG | - | chr1_3:55832237-55832256 | Msa0126730:CDS | 45.0% |
| !!! | TCGCCACTTTTTCGGTCTAA+GGG | - | chr1_3:55832245-55832264 | Msa0126730:CDS | 45.0% |
| AAGGGATTACCCTTCACCTT+CGG | - | chr1_3:55832263-55832282 | Msa0126730:CDS | 45.0% | |
| AATGGAGCCACTAGTGATAC+CGG | + | chr1_3:55832337-55832356 | None:intergenic | 45.0% | |
| TTTACCCCATCGTTTCGCAT+TGG | - | chr1_3:55832415-55832434 | Msa0126730:CDS | 45.0% | |
| TTACCCCATCGTTTCGCATT+GGG | - | chr1_3:55832416-55832435 | Msa0126730:CDS | 45.0% | |
| AAACCCAATGCGAAACGATG+GGG | + | chr1_3:55832422-55832441 | None:intergenic | 45.0% | |
| CAAACCCAATGCGAAACGAT+GGG | + | chr1_3:55832423-55832442 | None:intergenic | 45.0% | |
| !! | TCCGGTGTTATTGACTTTGC+CGG | - | chr1_3:55832498-55832517 | Msa0126730:CDS | 45.0% |
| ACCGGCAAAGTCAATAACAC+CGG | + | chr1_3:55832502-55832521 | None:intergenic | 45.0% | |
| !! | GTTATTGACTTTGCCGGTTC+AGG | - | chr1_3:55832504-55832523 | Msa0126730:CDS | 45.0% |
| CATATGAACCACACCTGAAC+CGG | + | chr1_3:55832520-55832539 | None:intergenic | 45.0% | |
| TTCAGGTGTGGTTCATATGG+TGG | - | chr1_3:55832521-55832540 | Msa0126730:CDS | 45.0% | |
| TCAGGTGTGGTTCATATGGT+GGG | - | chr1_3:55832522-55832541 | Msa0126730:CDS | 45.0% | |
| !! | ATATGGTGGGTGGAATAGCA+GGG | - | chr1_3:55832535-55832554 | Msa0126730:CDS | 45.0% |
| TAGAAGGTCCTAGAATAGGG+CGG | - | chr1_3:55832574-55832593 | Msa0126730:CDS | 45.0% | |
| GTCCTTTCAATGCAACAGAC+CGG | + | chr1_3:55832614-55832633 | None:intergenic | 45.0% | |
| ! | TGGAGTGCTATTGGAAGAAC+AGG | - | chr1_3:55832765-55832784 | Msa0126730:CDS | 45.0% |
| ! | AACAGGTGTCACAACGACAT+TGG | - | chr1_3:55832782-55832801 | Msa0126730:CDS | 45.0% |
| GACGTGTGTAACGGTTTACT+TGG | - | chr1_3:55832873-55832892 | Msa0126730:CDS | 45.0% | |
| GTGTGTAACGGTTTACTTGG+CGG | - | chr1_3:55832876-55832895 | Msa0126730:CDS | 45.0% | |
| ! | GGTTTTGCTGCTATAACTGC+AGG | - | chr1_3:55832897-55832916 | Msa0126730:CDS | 45.0% |
| AACTGCAGGTTGTTCTGTTG+TGG | - | chr1_3:55832911-55832930 | Msa0126730:CDS | 45.0% | |
| GTTGTTCTGTTGTGGAACCA+TGG | - | chr1_3:55832919-55832938 | Msa0126730:CDS | 45.0% | |
| AACAAACCCACACACAATCG+CGG | + | chr1_3:55832946-55832965 | None:intergenic | 45.0% | |
| !! | GATTGTGTGTGGGTTTGTTG+CGG | - | chr1_3:55832947-55832966 | Msa0126730:CDS | 45.0% |
| TACGGGATTGTTTGCAAAGG+GGG | - | chr1_3:55833076-55833095 | Msa0126730:CDS | 45.0% | |
| ATGAGATTTATGGGACTGGG+AGG | - | chr1_3:55833108-55833127 | Msa0126730:CDS | 45.0% | |
| ! | AGGCCGTATGGATTGTTGAT+GGG | - | chr1_3:55833128-55833147 | Msa0126730:CDS | 45.0% |
| CCACCCATCAACAATCCATA+CGG | + | chr1_3:55833134-55833153 | None:intergenic | 45.0% | |
| ! | TATGGATTGTTGATGGGTGG+TGG | - | chr1_3:55833134-55833153 | Msa0126730:CDS | 45.0% |
| !! | AGGTGTTGGTTATTTGTGGG+TGG | - | chr1_3:55833186-55833205 | Msa0126730:CDS | 45.0% |
| !! | GGTGTTGGTTATTTGTGGGT+GGG | - | chr1_3:55833187-55833206 | Msa0126730:CDS | 45.0% |
| ATGGACTTGACAAGACATGG+TGG | - | chr1_3:55833293-55833312 | Msa0126730:CDS | 45.0% | |
| TGGACTTGACAAGACATGGT+GGG | - | chr1_3:55833294-55833313 | Msa0126730:CDS | 45.0% | |
| TGCTTATGCGTATCATGACG+AGG | - | chr1_3:55833319-55833338 | Msa0126730:CDS | 45.0% | |
| GGTGCATAGGTAGTCTGCAA+CGG | + | chr1_3:55831974-55831993 | None:intergenic | 50.0% | |
| TAGATAGTAGGAGAGGCCAC+CGG | + | chr1_3:55832178-55832197 | None:intergenic | 50.0% | |
| !!! | GTCGCCACTTTTTCGGTCTA+AGG | - | chr1_3:55832244-55832263 | Msa0126730:CDS | 50.0% |
| AGGGATTACCCTTCACCTTC+GGG | - | chr1_3:55832264-55832283 | Msa0126730:CDS | 50.0% | |
| TGTAGTCACCCGAAGGTGAA+GGG | + | chr1_3:55832275-55832294 | None:intergenic | 50.0% | |
| AAGAAGCTGTAGTCACCCGA+AGG | + | chr1_3:55832282-55832301 | None:intergenic | 50.0% | |
| CCAAACCCAATGCGAAACGA+TGG | + | chr1_3:55832424-55832443 | None:intergenic | 50.0% | |
| CCATCGTTTCGCATTGGGTT+TGG | - | chr1_3:55832421-55832440 | Msa0126730:CDS | 50.0% | |
| CGGTTCAGGTGTGGTTCATA+TGG | - | chr1_3:55832518-55832537 | Msa0126730:CDS | 50.0% | |
| !! | CATATGGTGGGTGGAATAGC+AGG | - | chr1_3:55832534-55832553 | Msa0126730:CDS | 50.0% |
| TGGGTGGAATAGCAGGGTTA+TGG | - | chr1_3:55832541-55832560 | Msa0126730:CDS | 50.0% | |
| GGGTGGAATAGCAGGGTTAT+GGG | - | chr1_3:55832542-55832561 | Msa0126730:CDS | 50.0% | |
| GGTGGAATAGCAGGGTTATG+GGG | - | chr1_3:55832543-55832562 | Msa0126730:CDS | 50.0% | |
| GTGGAATAGCAGGGTTATGG+GGG | - | chr1_3:55832544-55832563 | Msa0126730:CDS | 50.0% | |
| TGGAATAGCAGGGTTATGGG+GGG | - | chr1_3:55832545-55832564 | Msa0126730:CDS | 50.0% | |
| !!! | TTGCGGCGTGGGTTTTGATT+GGG | - | chr1_3:55832964-55832983 | Msa0126730:CDS | 50.0% |
| TGTAACTGCGCAGCCTCTAA+TGG | + | chr1_3:55833026-55833045 | None:intergenic | 50.0% | |
| TTAGAGGCTGCGCAGTTACA+TGG | - | chr1_3:55833026-55833045 | Msa0126730:CDS | 50.0% | |
| ! | GAGGCCGTATGGATTGTTGA+TGG | - | chr1_3:55833127-55833146 | Msa0126730:CDS | 50.0% |
| ! | CCGTATGGATTGTTGATGGG+TGG | - | chr1_3:55833131-55833150 | Msa0126730:CDS | 50.0% |
| !! | GATTGTTGATGGGTGGTGGA+GGG | - | chr1_3:55833138-55833157 | Msa0126730:CDS | 50.0% |
| ! | GGGATGGACTTGACAAGACA+TGG | - | chr1_3:55833290-55833309 | Msa0126730:CDS | 50.0% |
| ! | CACACTGAAGGTGCACTGAT+TGG | + | chr1_3:55833443-55833462 | None:intergenic | 50.0% |
| GGTGCATAGGTAGTCTGCAA+CGG | + | chr1_3:55831974-55831993 | None:intergenic | 50.0% | |
| TAGATAGTAGGAGAGGCCAC+CGG | + | chr1_3:55832178-55832197 | None:intergenic | 50.0% | |
| !!! | GTCGCCACTTTTTCGGTCTA+AGG | - | chr1_3:55832244-55832263 | Msa0126730:CDS | 50.0% |
| AGGGATTACCCTTCACCTTC+GGG | - | chr1_3:55832264-55832283 | Msa0126730:CDS | 50.0% | |
| TGTAGTCACCCGAAGGTGAA+GGG | + | chr1_3:55832275-55832294 | None:intergenic | 50.0% | |
| AAGAAGCTGTAGTCACCCGA+AGG | + | chr1_3:55832282-55832301 | None:intergenic | 50.0% | |
| CCAAACCCAATGCGAAACGA+TGG | + | chr1_3:55832424-55832443 | None:intergenic | 50.0% | |
| CCATCGTTTCGCATTGGGTT+TGG | - | chr1_3:55832421-55832440 | Msa0126730:CDS | 50.0% | |
| CGGTTCAGGTGTGGTTCATA+TGG | - | chr1_3:55832518-55832537 | Msa0126730:CDS | 50.0% | |
| !! | CATATGGTGGGTGGAATAGC+AGG | - | chr1_3:55832534-55832553 | Msa0126730:CDS | 50.0% |
| TGGGTGGAATAGCAGGGTTA+TGG | - | chr1_3:55832541-55832560 | Msa0126730:CDS | 50.0% | |
| GGGTGGAATAGCAGGGTTAT+GGG | - | chr1_3:55832542-55832561 | Msa0126730:CDS | 50.0% | |
| GGTGGAATAGCAGGGTTATG+GGG | - | chr1_3:55832543-55832562 | Msa0126730:CDS | 50.0% | |
| GTGGAATAGCAGGGTTATGG+GGG | - | chr1_3:55832544-55832563 | Msa0126730:CDS | 50.0% | |
| TGGAATAGCAGGGTTATGGG+GGG | - | chr1_3:55832545-55832564 | Msa0126730:CDS | 50.0% | |
| !!! | TTGCGGCGTGGGTTTTGATT+GGG | - | chr1_3:55832964-55832983 | Msa0126730:CDS | 50.0% |
| TGTAACTGCGCAGCCTCTAA+TGG | + | chr1_3:55833026-55833045 | None:intergenic | 50.0% | |
| TTAGAGGCTGCGCAGTTACA+TGG | - | chr1_3:55833026-55833045 | Msa0126730:CDS | 50.0% | |
| ! | GAGGCCGTATGGATTGTTGA+TGG | - | chr1_3:55833127-55833146 | Msa0126730:CDS | 50.0% |
| ! | CCGTATGGATTGTTGATGGG+TGG | - | chr1_3:55833131-55833150 | Msa0126730:CDS | 50.0% |
| !! | GATTGTTGATGGGTGGTGGA+GGG | - | chr1_3:55833138-55833157 | Msa0126730:CDS | 50.0% |
| ! | GGGATGGACTTGACAAGACA+TGG | - | chr1_3:55833290-55833309 | Msa0126730:CDS | 50.0% |
| ! | CACACTGAAGGTGCACTGAT+TGG | + | chr1_3:55833443-55833462 | None:intergenic | 50.0% |
| GCATAGGTAGTCTGCAACGG+CGG | + | chr1_3:55831971-55831990 | None:intergenic | 55.0% | |
| CTGTAGTCACCCGAAGGTGA+AGG | + | chr1_3:55832276-55832295 | None:intergenic | 55.0% | |
| ! | CATTGGGTTTGGTCTGCCGA+TGG | - | chr1_3:55832432-55832451 | Msa0126730:CDS | 55.0% |
| ! | GGTTTGGTCTGCCGATGGTT+GGG | - | chr1_3:55832437-55832456 | Msa0126730:CDS | 55.0% |
| !! | CATCACCATCGGTTCGCGTT+GGG | + | chr1_3:55832467-55832486 | None:intergenic | 55.0% |
| !! | ACATCACCATCGGTTCGCGT+TGG | + | chr1_3:55832468-55832487 | None:intergenic | 55.0% |
| !! | TGACTTTGCCGGTTCAGGTG+TGG | - | chr1_3:55832509-55832528 | Msa0126730:CDS | 55.0% |
| ! | GGTGTGGTTCATATGGTGGG+TGG | - | chr1_3:55832525-55832544 | Msa0126730:CDS | 55.0% |
| CTAGAATAGGGCGGTTCGAC+CGG | - | chr1_3:55832583-55832602 | Msa0126730:CDS | 55.0% | |
| GGCCGGTCTGTTGCATTGAA+AGG | - | chr1_3:55832609-55832628 | Msa0126730:CDS | 55.0% | |
| GAAAGGACATAGCGCGTCGT+TGG | - | chr1_3:55832626-55832645 | Msa0126730:CDS | 55.0% | |
| ! | GGTGTCACAACGACATTGGC+TGG | - | chr1_3:55832786-55832805 | Msa0126730:CDS | 55.0% |
| !! | GTTGCGGCGTGGGTTTTGAT+TGG | - | chr1_3:55832963-55832982 | Msa0126730:CDS | 55.0% |
| AGGCTGCGCAGTTACATGGA+GGG | - | chr1_3:55833030-55833049 | Msa0126730:CDS | 55.0% | |
| !! | CGCATGGGGGGTGTTGTTTA+CGG | - | chr1_3:55833058-55833077 | Msa0126730:CDS | 55.0% |
| !! | GCATGGGGGGTGTTGTTTAC+GGG | - | chr1_3:55833059-55833078 | Msa0126730:CDS | 55.0% |
| ! | GGATTGTTGATGGGTGGTGG+AGG | - | chr1_3:55833137-55833156 | Msa0126730:CDS | 55.0% |
| TGGTGGAGGGAGGTTGTTTG+CGG | - | chr1_3:55833151-55833170 | Msa0126730:CDS | 55.0% | |
| !! | TGGGTGGGTTACCGTCACAA+TGG | - | chr1_3:55833202-55833221 | Msa0126730:CDS | 55.0% |
| TCGAGGGATGATGAGACTGC+AGG | - | chr1_3:55833269-55833288 | Msa0126730:CDS | 55.0% | |
| CGAGGGATGATGAGACTGCA+GGG | - | chr1_3:55833270-55833289 | Msa0126730:CDS | 55.0% | |
| GGATGATGAGACTGCAGGGA+TGG | - | chr1_3:55833274-55833293 | Msa0126730:CDS | 55.0% | |
| !! | GAAGGTGCACTGATTGGCAC+CGG | + | chr1_3:55833437-55833456 | None:intergenic | 55.0% |
| GCATAGGTAGTCTGCAACGG+CGG | + | chr1_3:55831971-55831990 | None:intergenic | 55.0% | |
| CTGTAGTCACCCGAAGGTGA+AGG | + | chr1_3:55832276-55832295 | None:intergenic | 55.0% | |
| ! | CATTGGGTTTGGTCTGCCGA+TGG | - | chr1_3:55832432-55832451 | Msa0126730:CDS | 55.0% |
| ! | GGTTTGGTCTGCCGATGGTT+GGG | - | chr1_3:55832437-55832456 | Msa0126730:CDS | 55.0% |
| !! | CATCACCATCGGTTCGCGTT+GGG | + | chr1_3:55832467-55832486 | None:intergenic | 55.0% |
| !! | ACATCACCATCGGTTCGCGT+TGG | + | chr1_3:55832468-55832487 | None:intergenic | 55.0% |
| !! | TGACTTTGCCGGTTCAGGTG+TGG | - | chr1_3:55832509-55832528 | Msa0126730:CDS | 55.0% |
| ! | GGTGTGGTTCATATGGTGGG+TGG | - | chr1_3:55832525-55832544 | Msa0126730:CDS | 55.0% |
| CTAGAATAGGGCGGTTCGAC+CGG | - | chr1_3:55832583-55832602 | Msa0126730:CDS | 55.0% | |
| GGCCGGTCTGTTGCATTGAA+AGG | - | chr1_3:55832609-55832628 | Msa0126730:CDS | 55.0% | |
| GAAAGGACATAGCGCGTCGT+TGG | - | chr1_3:55832626-55832645 | Msa0126730:CDS | 55.0% | |
| ! | GGTGTCACAACGACATTGGC+TGG | - | chr1_3:55832786-55832805 | Msa0126730:CDS | 55.0% |
| !! | GTTGCGGCGTGGGTTTTGAT+TGG | - | chr1_3:55832963-55832982 | Msa0126730:CDS | 55.0% |
| AGGCTGCGCAGTTACATGGA+GGG | - | chr1_3:55833030-55833049 | Msa0126730:CDS | 55.0% | |
| !! | CGCATGGGGGGTGTTGTTTA+CGG | - | chr1_3:55833058-55833077 | Msa0126730:CDS | 55.0% |
| !! | GCATGGGGGGTGTTGTTTAC+GGG | - | chr1_3:55833059-55833078 | Msa0126730:CDS | 55.0% |
| ! | GGATTGTTGATGGGTGGTGG+AGG | - | chr1_3:55833137-55833156 | Msa0126730:CDS | 55.0% |
| TGGTGGAGGGAGGTTGTTTG+CGG | - | chr1_3:55833151-55833170 | Msa0126730:CDS | 55.0% | |
| !! | TGGGTGGGTTACCGTCACAA+TGG | - | chr1_3:55833202-55833221 | Msa0126730:CDS | 55.0% |
| TCGAGGGATGATGAGACTGC+AGG | - | chr1_3:55833269-55833288 | Msa0126730:CDS | 55.0% | |
| CGAGGGATGATGAGACTGCA+GGG | - | chr1_3:55833270-55833289 | Msa0126730:CDS | 55.0% | |
| GGATGATGAGACTGCAGGGA+TGG | - | chr1_3:55833274-55833293 | Msa0126730:CDS | 55.0% | |
| !! | GAAGGTGCACTGATTGGCAC+CGG | + | chr1_3:55833437-55833456 | None:intergenic | 55.0% |
| ! | TTGCGGTGGTGGTGAGGAGT+GGG | + | chr1_3:55831942-55831961 | None:intergenic | 60.0% |
| ! | TTTGCGGTGGTGGTGAGGAG+TGG | + | chr1_3:55831943-55831962 | None:intergenic | 60.0% |
| ! | TTGCGTTTGCGGTGGTGGTG+AGG | + | chr1_3:55831948-55831967 | None:intergenic | 60.0% |
| TGCAACGGCGGTTGCGTTTG+CGG | + | chr1_3:55831959-55831978 | None:intergenic | 60.0% | |
| CATGGCGAAACCGAGCTGCA+TGG | + | chr1_3:55832085-55832104 | None:intergenic | 60.0% | |
| AATGTCCTCGACGCTGCAGC+CGG | - | chr1_3:55832156-55832175 | Msa0126730:CDS | 60.0% | |
| !! | GCCTTTGGAGCACCCTCCAA+CGG | - | chr1_3:55832213-55832232 | Msa0126730:CDS | 60.0% |
| GCACCCTCCAACGGCTTCAT+CGG | - | chr1_3:55832222-55832241 | Msa0126730:CDS | 60.0% | |
| CGACCGATGAAGCCGTTGGA+GGG | + | chr1_3:55832228-55832247 | None:intergenic | 60.0% | |
| AGTGATACCGGCAGCAGCGA+TGG | + | chr1_3:55832325-55832344 | None:intergenic | 60.0% | |
| GCTGCTGCCGGTATCACTAG+TGG | - | chr1_3:55832327-55832346 | Msa0126730:CDS | 60.0% | |
| ! | GGGTTTGGTCTGCCGATGGT+TGG | - | chr1_3:55832436-55832455 | Msa0126730:CDS | 60.0% |
| CGGTCGAACCGCCCTATTCT+AGG | + | chr1_3:55832585-55832604 | None:intergenic | 60.0% | |
| ATGCAACAGACCGGCCTGTC+CGG | + | chr1_3:55832605-55832624 | None:intergenic | 60.0% | |
| AGGACATAGCGCGTCGTTGG+TGG | - | chr1_3:55832629-55832648 | Msa0126730:CDS | 60.0% | |
| !! | TAGCGCGTCGTTGGTGGTGT+TGG | - | chr1_3:55832635-55832654 | Msa0126730:CDS | 60.0% |
| !! | AGCGCGTCGTTGGTGGTGTT+GGG | - | chr1_3:55832636-55832655 | Msa0126730:CDS | 60.0% |
| ! | GGTTGGTACGGGTTCAACCC+CGG | - | chr1_3:55832678-55832697 | Msa0126730:CDS | 60.0% |
| CATGGGCCGCGATTGTGTGT+GGG | - | chr1_3:55832937-55832956 | Msa0126730:CDS | 60.0% | |
| !! | TGTGTGGGTTTGTTGCGGCG+TGG | - | chr1_3:55832952-55832971 | Msa0126730:CDS | 60.0% |
| !! | GTGTGGGTTTGTTGCGGCGT+GGG | - | chr1_3:55832953-55832972 | Msa0126730:CDS | 60.0% |
| GAGGCTGCGCAGTTACATGG+AGG | - | chr1_3:55833029-55833048 | Msa0126730:CDS | 60.0% | |
| GCGCAGTTACATGGAGGGTG+TGG | - | chr1_3:55833035-55833054 | Msa0126730:CDS | 60.0% | |
| ! | TACATGGAGGGTGTGGCGCA+TGG | - | chr1_3:55833042-55833061 | Msa0126730:CDS | 60.0% |
| ! | ACATGGAGGGTGTGGCGCAT+GGG | - | chr1_3:55833043-55833062 | Msa0126730:CDS | 60.0% |
| TATGGGACTGGGAGGCCGTA+TGG | - | chr1_3:55833116-55833135 | Msa0126730:CDS | 60.0% | |
| !! | TGTTGATGGGTGGTGGAGGG+AGG | - | chr1_3:55833141-55833160 | Msa0126730:CDS | 60.0% |
| AGTGTGTCTCCCTCTGCCAC+CGG | - | chr1_3:55833401-55833420 | Msa0126730:CDS | 60.0% | |
| GTATCGTGTCCGGTGGCAGA+GGG | + | chr1_3:55833413-55833432 | None:intergenic | 60.0% | |
| TGTATCGTGTCCGGTGGCAG+AGG | + | chr1_3:55833414-55833433 | None:intergenic | 60.0% | |
| TGCCACCGGACACGATACAC+CGG | - | chr1_3:55833415-55833434 | Msa0126730:CDS | 60.0% | |
| !! | TGGCACCGGTGTATCGTGTC+CGG | + | chr1_3:55833423-55833442 | None:intergenic | 60.0% |
| ! | TTGCGGTGGTGGTGAGGAGT+GGG | + | chr1_3:55831942-55831961 | None:intergenic | 60.0% |
| ! | TTTGCGGTGGTGGTGAGGAG+TGG | + | chr1_3:55831943-55831962 | None:intergenic | 60.0% |
| ! | TTGCGTTTGCGGTGGTGGTG+AGG | + | chr1_3:55831948-55831967 | None:intergenic | 60.0% |
| TGCAACGGCGGTTGCGTTTG+CGG | + | chr1_3:55831959-55831978 | None:intergenic | 60.0% | |
| CATGGCGAAACCGAGCTGCA+TGG | + | chr1_3:55832085-55832104 | None:intergenic | 60.0% | |
| AATGTCCTCGACGCTGCAGC+CGG | - | chr1_3:55832156-55832175 | Msa0126730:CDS | 60.0% | |
| !! | GCCTTTGGAGCACCCTCCAA+CGG | - | chr1_3:55832213-55832232 | Msa0126730:CDS | 60.0% |
| GCACCCTCCAACGGCTTCAT+CGG | - | chr1_3:55832222-55832241 | Msa0126730:CDS | 60.0% | |
| CGACCGATGAAGCCGTTGGA+GGG | + | chr1_3:55832228-55832247 | None:intergenic | 60.0% | |
| AGTGATACCGGCAGCAGCGA+TGG | + | chr1_3:55832325-55832344 | None:intergenic | 60.0% | |
| GCTGCTGCCGGTATCACTAG+TGG | - | chr1_3:55832327-55832346 | Msa0126730:CDS | 60.0% | |
| ! | GGGTTTGGTCTGCCGATGGT+TGG | - | chr1_3:55832436-55832455 | Msa0126730:CDS | 60.0% |
| CGGTCGAACCGCCCTATTCT+AGG | + | chr1_3:55832585-55832604 | None:intergenic | 60.0% | |
| ATGCAACAGACCGGCCTGTC+CGG | + | chr1_3:55832605-55832624 | None:intergenic | 60.0% | |
| AGGACATAGCGCGTCGTTGG+TGG | - | chr1_3:55832629-55832648 | Msa0126730:CDS | 60.0% | |
| !! | TAGCGCGTCGTTGGTGGTGT+TGG | - | chr1_3:55832635-55832654 | Msa0126730:CDS | 60.0% |
| !! | AGCGCGTCGTTGGTGGTGTT+GGG | - | chr1_3:55832636-55832655 | Msa0126730:CDS | 60.0% |
| ! | GGTTGGTACGGGTTCAACCC+CGG | - | chr1_3:55832678-55832697 | Msa0126730:CDS | 60.0% |
| CATGGGCCGCGATTGTGTGT+GGG | - | chr1_3:55832937-55832956 | Msa0126730:CDS | 60.0% | |
| !! | TGTGTGGGTTTGTTGCGGCG+TGG | - | chr1_3:55832952-55832971 | Msa0126730:CDS | 60.0% |
| !! | GTGTGGGTTTGTTGCGGCGT+GGG | - | chr1_3:55832953-55832972 | Msa0126730:CDS | 60.0% |
| GAGGCTGCGCAGTTACATGG+AGG | - | chr1_3:55833029-55833048 | Msa0126730:CDS | 60.0% | |
| GCGCAGTTACATGGAGGGTG+TGG | - | chr1_3:55833035-55833054 | Msa0126730:CDS | 60.0% | |
| ! | TACATGGAGGGTGTGGCGCA+TGG | - | chr1_3:55833042-55833061 | Msa0126730:CDS | 60.0% |
| ! | ACATGGAGGGTGTGGCGCAT+GGG | - | chr1_3:55833043-55833062 | Msa0126730:CDS | 60.0% |
| TATGGGACTGGGAGGCCGTA+TGG | - | chr1_3:55833116-55833135 | Msa0126730:CDS | 60.0% | |
| !! | TGTTGATGGGTGGTGGAGGG+AGG | - | chr1_3:55833141-55833160 | Msa0126730:CDS | 60.0% |
| AGTGTGTCTCCCTCTGCCAC+CGG | - | chr1_3:55833401-55833420 | Msa0126730:CDS | 60.0% | |
| GTATCGTGTCCGGTGGCAGA+GGG | + | chr1_3:55833413-55833432 | None:intergenic | 60.0% | |
| TGTATCGTGTCCGGTGGCAG+AGG | + | chr1_3:55833414-55833433 | None:intergenic | 60.0% | |
| TGCCACCGGACACGATACAC+CGG | - | chr1_3:55833415-55833434 | Msa0126730:CDS | 60.0% | |
| !! | TGGCACCGGTGTATCGTGTC+CGG | + | chr1_3:55833423-55833442 | None:intergenic | 60.0% |
| GAGGAGTGGGGCTAGGTCTG+TGG | + | chr1_3:55831929-55831948 | None:intergenic | 65.0% | |
| ! | TGGTGGTGAGGAGTGGGGCT+AGG | + | chr1_3:55831936-55831955 | None:intergenic | 65.0% |
| ! | TGCGGTGGTGGTGAGGAGTG+GGG | + | chr1_3:55831941-55831960 | None:intergenic | 65.0% |
| AACGGCGGTTGCGTTTGCGG+TGG | + | chr1_3:55831956-55831975 | None:intergenic | 65.0% | |
| GGTTTCGCCATGCTCTGCGC+AGG | - | chr1_3:55832093-55832112 | Msa0126730:CDS | 65.0% | |
| AACGGAGCCTGCGCAGAGCA+TGG | + | chr1_3:55832103-55832122 | None:intergenic | 65.0% | |
| ! | GGCTGCAGCGTCGAGGACAT+TGG | + | chr1_3:55832157-55832176 | None:intergenic | 65.0% |
| !! | GCCGTTGGAGGGTGCTCCAA+AGG | + | chr1_3:55832217-55832236 | None:intergenic | 65.0% |
| GCGACCGATGAAGCCGTTGG+AGG | + | chr1_3:55832229-55832248 | None:intergenic | 65.0% | |
| GTGGCGACCGATGAAGCCGT+TGG | + | chr1_3:55832232-55832251 | None:intergenic | 65.0% | |
| CAGCGATGGCGAAGGCCCAT+TGG | + | chr1_3:55832311-55832330 | None:intergenic | 65.0% | |
| !! | CGTTGGGCTGGCCCAACCAT+CGG | + | chr1_3:55832451-55832470 | None:intergenic | 65.0% |
| !! | ACCATCGGTTCGCGTTGGGC+TGG | + | chr1_3:55832463-55832482 | None:intergenic | 65.0% |
| ATAGGGCGGTTCGACCGGAC+AGG | - | chr1_3:55832588-55832607 | Msa0126730:CDS | 65.0% | |
| CCACACACAATCGCGGCCCA+TGG | + | chr1_3:55832939-55832958 | None:intergenic | 65.0% | |
| CCATGGGCCGCGATTGTGTG+TGG | - | chr1_3:55832936-55832955 | Msa0126730:CDS | 65.0% | |
| ! | CATGGAGGGTGTGGCGCATG+GGG | - | chr1_3:55833044-55833063 | Msa0126730:CDS | 65.0% |
| ! | ATGGAGGGTGTGGCGCATGG+GGG | - | chr1_3:55833045-55833064 | Msa0126730:CDS | 65.0% |
| AGGGAGGTTGTTTGCGGCGC+AGG | - | chr1_3:55833157-55833176 | Msa0126730:CDS | 65.0% | |
| GAGGTTGTTTGCGGCGCAGG+TGG | - | chr1_3:55833160-55833179 | Msa0126730:CDS | 65.0% | |
| GTTTGCGGCGCAGGTGGTTG+AGG | - | chr1_3:55833166-55833185 | Msa0126730:CDS | 65.0% | |
| GGCGCAGGTGGTTGAGGTGT+TGG | - | chr1_3:55833172-55833191 | Msa0126730:CDS | 65.0% | |
| GAGGGAGACACACTCGTGGC+CGG | + | chr1_3:55833395-55833414 | None:intergenic | 65.0% | |
| GGCAGAGGGAGACACACTCG+TGG | + | chr1_3:55833399-55833418 | None:intergenic | 65.0% | |
| CACCGGTGTATCGTGTCCGG+TGG | + | chr1_3:55833420-55833439 | None:intergenic | 65.0% | |
| GAGGAGTGGGGCTAGGTCTG+TGG | + | chr1_3:55831929-55831948 | None:intergenic | 65.0% | |
| ! | TGGTGGTGAGGAGTGGGGCT+AGG | + | chr1_3:55831936-55831955 | None:intergenic | 65.0% |
| ! | TGCGGTGGTGGTGAGGAGTG+GGG | + | chr1_3:55831941-55831960 | None:intergenic | 65.0% |
| AACGGCGGTTGCGTTTGCGG+TGG | + | chr1_3:55831956-55831975 | None:intergenic | 65.0% | |
| GGTTTCGCCATGCTCTGCGC+AGG | - | chr1_3:55832093-55832112 | Msa0126730:CDS | 65.0% | |
| AACGGAGCCTGCGCAGAGCA+TGG | + | chr1_3:55832103-55832122 | None:intergenic | 65.0% | |
| ! | GGCTGCAGCGTCGAGGACAT+TGG | + | chr1_3:55832157-55832176 | None:intergenic | 65.0% |
| !! | GCCGTTGGAGGGTGCTCCAA+AGG | + | chr1_3:55832217-55832236 | None:intergenic | 65.0% |
| GCGACCGATGAAGCCGTTGG+AGG | + | chr1_3:55832229-55832248 | None:intergenic | 65.0% | |
| GTGGCGACCGATGAAGCCGT+TGG | + | chr1_3:55832232-55832251 | None:intergenic | 65.0% | |
| CAGCGATGGCGAAGGCCCAT+TGG | + | chr1_3:55832311-55832330 | None:intergenic | 65.0% | |
| !! | CGTTGGGCTGGCCCAACCAT+CGG | + | chr1_3:55832451-55832470 | None:intergenic | 65.0% |
| !! | ACCATCGGTTCGCGTTGGGC+TGG | + | chr1_3:55832463-55832482 | None:intergenic | 65.0% |
| ATAGGGCGGTTCGACCGGAC+AGG | - | chr1_3:55832588-55832607 | Msa0126730:CDS | 65.0% | |
| CCACACACAATCGCGGCCCA+TGG | + | chr1_3:55832939-55832958 | None:intergenic | 65.0% | |
| CCATGGGCCGCGATTGTGTG+TGG | - | chr1_3:55832936-55832955 | Msa0126730:CDS | 65.0% | |
| ! | CATGGAGGGTGTGGCGCATG+GGG | - | chr1_3:55833044-55833063 | Msa0126730:CDS | 65.0% |
| ! | ATGGAGGGTGTGGCGCATGG+GGG | - | chr1_3:55833045-55833064 | Msa0126730:CDS | 65.0% |
| AGGGAGGTTGTTTGCGGCGC+AGG | - | chr1_3:55833157-55833176 | Msa0126730:CDS | 65.0% | |
| GAGGTTGTTTGCGGCGCAGG+TGG | - | chr1_3:55833160-55833179 | Msa0126730:CDS | 65.0% | |
| GTTTGCGGCGCAGGTGGTTG+AGG | - | chr1_3:55833166-55833185 | Msa0126730:CDS | 65.0% | |
| GGCGCAGGTGGTTGAGGTGT+TGG | - | chr1_3:55833172-55833191 | Msa0126730:CDS | 65.0% | |
| GAGGGAGACACACTCGTGGC+CGG | + | chr1_3:55833395-55833414 | None:intergenic | 65.0% | |
| GGCAGAGGGAGACACACTCG+TGG | + | chr1_3:55833399-55833418 | None:intergenic | 65.0% | |
| CACCGGTGTATCGTGTCCGG+TGG | + | chr1_3:55833420-55833439 | None:intergenic | 65.0% | |
| GGCGGTTGCGTTTGCGGTGG+TGG | + | chr1_3:55831953-55831972 | None:intergenic | 70.0% | |
| GCCTTCGCCATCGCTGCTGC+CGG | - | chr1_3:55832315-55832334 | Msa0126730:CDS | 70.0% | |
| ACCGGCAGCAGCGATGGCGA+AGG | + | chr1_3:55832319-55832338 | None:intergenic | 70.0% | |
| GCCAGCCCAACGCGAACCGA+TGG | - | chr1_3:55832459-55832478 | Msa0126730:CDS | 70.0% | |
| ! | TGGAGGGTGTGGCGCATGGG+GGG | - | chr1_3:55833046-55833065 | Msa0126730:CDS | 70.0% |
| GGCGGTTGCGTTTGCGGTGG+TGG | + | chr1_3:55831953-55831972 | None:intergenic | 70.0% | |
| GCCTTCGCCATCGCTGCTGC+CGG | - | chr1_3:55832315-55832334 | Msa0126730:CDS | 70.0% | |
| ACCGGCAGCAGCGATGGCGA+AGG | + | chr1_3:55832319-55832338 | None:intergenic | 70.0% | |
| GCCAGCCCAACGCGAACCGA+TGG | - | chr1_3:55832459-55832478 | Msa0126730:CDS | 70.0% | |
| ! | TGGAGGGTGTGGCGCATGGG+GGG | - | chr1_3:55833046-55833065 | Msa0126730:CDS | 70.0% |
| GTCCTCGACGCTGCAGCCGG+TGG | - | chr1_3:55832159-55832178 | Msa0126730:CDS | 75.0% | |
| GGCGGTTCGACCGGACAGGC+CGG | - | chr1_3:55832592-55832611 | Msa0126730:CDS | 75.0% | |
| GTCCTCGACGCTGCAGCCGG+TGG | - | chr1_3:55832159-55832178 | Msa0126730:CDS | 75.0% | |
| GGCGGTTCGACCGGACAGGC+CGG | - | chr1_3:55832592-55832611 | Msa0126730:CDS | 75.0% | |
| !! | GGCCACCGGCTGCAGCGTCG+AGG | + | chr1_3:55832164-55832183 | None:intergenic | 80.0% |
| !! | GGCCACCGGCTGCAGCGTCG+AGG | + | chr1_3:55832164-55832183 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55831904 | 55833463 | 55831904 | ID=Msa0126730;Name=Msa0126730 |
| chr1_3 | mRNA | 55831904 | 55833463 | 55831904 | ID=Msa0126730-mRNA-1;Parent=Msa0126730;Name=Msa0126730-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|519 |
| chr1_3 | exon | 55831904 | 55833463 | 55831904 | ID=Msa0126730-mRNA-1:exon:17470;Parent=Msa0126730-mRNA-1 |
| chr1_3 | CDS | 55831904 | 55833463 | 55831904 | ID=Msa0126730-mRNA-1:cds;Parent=Msa0126730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
