Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379380 | XP_013461369.1 | 86.567 | 201 | 27 | 0 | 19 | 219 | 4 | 204 | 3.20e-105 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379380 | A0A072V083 | 86.567 | 201 | 27 | 0 | 19 | 219 | 4 | 204 | 1.53e-105 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0471020 | Msa1379380 | 0.944260 | 2.703907e-103 | -8.615850e-47 |
| Msa0471070 | Msa1379380 | 0.959897 | 5.968135e-118 | -8.615850e-47 |
| Msa0515820 | Msa1379380 | 0.932622 | 6.462692e-95 | -8.615850e-47 |
| Msa0925940 | Msa1379380 | 0.804703 | 1.901895e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379380 | MtrunA17_Chr3g0125811 | 86.567 | 201 | 27 | 0 | 19 | 219 | 4 | 204 | 2.94e-109 | 325 |
| Msa1379380 | MtrunA17_Chr1g0159461 | 46.305 | 203 | 70 | 5 | 21 | 190 | 1 | 197 | 1.87e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 132 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTATGAGAATAAGAAATT+TGG | 0.178504 | tig0020278:+129378 | None:intergenic |
| GGTATTGTCCATAGTTAAAA+TGG | 0.237581 | tig0020278:-127521 | Msa1379380:three_prime_UTR |
| GGTACAACCATGTCATTAAT+TGG | 0.248675 | tig0020278:-129485 | Msa1379380:CDS |
| CCATGTAGGCTGCAATTCTT+TGG | 0.255636 | tig0020278:+128782 | None:intergenic |
| GAAAAGGGTGCACTTCATTT+TGG | 0.257256 | tig0020278:-127845 | Msa1379380:three_prime_UTR |
| CACCAAATCTGATCCGAAAT+TGG | 0.280682 | tig0020278:+129208 | None:intergenic |
| GGTATGAAGTCGCGGGAAAA+TGG | 0.287860 | tig0020278:-127979 | Msa1379380:three_prime_UTR |
| GCTACTGATGCTGCTAATAT+TGG | 0.307471 | tig0020278:+128950 | None:intergenic |
| TCCACGACCGTTACAAGTTT+TGG | 0.308347 | tig0020278:+128196 | None:intergenic |
| AAGAAATAACGAAAATTTCT+AGG | 0.316566 | tig0020278:-128920 | Msa1379380:CDS |
| GATATGAATTATTATTATCT+TGG | 0.320025 | tig0020278:+127779 | None:intergenic |
| GTCCAATTTCGGATCAGATT+TGG | 0.328151 | tig0020278:-129210 | Msa1379380:CDS |
| TCGAAGCAAGTGTTTGAATC+AGG | 0.332729 | tig0020278:+128524 | None:intergenic |
| TTGATCCTAACATTATTGAT+TGG | 0.340862 | tig0020278:-129049 | Msa1379380:CDS |
| CTTATGAGAATAAGAAATTT+GGG | 0.359390 | tig0020278:+129379 | None:intergenic |
| TCAGCACCACGTTGCCTTGT+TGG | 0.374411 | tig0020278:+129236 | None:intergenic |
| GGTGCTGATCAGTCCAATTT+CGG | 0.378562 | tig0020278:-129221 | Msa1379380:CDS |
| AACTTTCACACTGCTTGATT+CGG | 0.381656 | tig0020278:+129878 | None:intergenic |
| TCACTCACATTTGTGCTCAT+TGG | 0.383131 | tig0020278:+127920 | None:intergenic |
| GTACAAGATAAAGGAGGAAA+AGG | 0.383813 | tig0020278:-127861 | Msa1379380:three_prime_UTR |
| GCCGCTCGCCTCGCTGAATC+CGG | 0.387906 | tig0020278:-128748 | Msa1379380:three_prime_UTR |
| ATTGAGGAAGAAGAGGAATA+TGG | 0.391911 | tig0020278:-129092 | Msa1379380:CDS |
| TGATCCTAACATTATTGATT+GGG | 0.392056 | tig0020278:-129048 | Msa1379380:CDS |
| AGATAATAATAATTCATATC+AGG | 0.400968 | tig0020278:-127776 | Msa1379380:three_prime_UTR |
| CGACGAATTGTCTCAATTCA+AGG | 0.402603 | tig0020278:-128814 | Msa1379380:three_prime_UTR |
| GGCAAGGGATATTGTTAATA+CGG | 0.403210 | tig0020278:-128032 | Msa1379380:three_prime_UTR |
| CATTCATAAAGAAGTTGCTT+GGG | 0.414263 | tig0020278:+128895 | None:intergenic |
| TTAACATAACCAGGAGGAAA+AGG | 0.419582 | tig0020278:-127615 | Msa1379380:three_prime_UTR |
| AACAGCAGCATATTCTGAAT+TGG | 0.421315 | tig0020278:+129014 | None:intergenic |
| CTGTGATAGGTACAAGATAA+AGG | 0.425096 | tig0020278:-127870 | Msa1379380:three_prime_UTR |
| GGGTTAACATCGATTTCCTT+TGG | 0.428305 | tig0020278:+129413 | None:intergenic |
| GTGAATTCAATTGAAGTTGA+TGG | 0.432801 | tig0020278:-129170 | Msa1379380:CDS |
| TCAGCCCAATCAATAATGTT+AGG | 0.434921 | tig0020278:+129044 | None:intergenic |
| ACCGTTGAAACGCTCTCGTC+AGG | 0.440496 | tig0020278:+128262 | None:intergenic |
| CCATCACATGTTAGATTGAC+CGG | 0.440788 | tig0020278:-128490 | Msa1379380:three_prime_UTR |
| ATGCTGCTAATATTGGAATC+TGG | 0.446519 | tig0020278:+128957 | None:intergenic |
| CATGTAGGCTGCAATTCTTT+GGG | 0.448246 | tig0020278:+128783 | None:intergenic |
| ATGCAAGGAACCTCCTTCTT+CGG | 0.450058 | tig0020278:-128701 | Msa1379380:three_prime_UTR |
| AAGTTAAGTTGTACTGTGAT+AGG | 0.450787 | tig0020278:-127883 | Msa1379380:three_prime_UTR |
| CCAAAGAATTGCAGCCTACA+TGG | 0.451697 | tig0020278:-128782 | Msa1379380:three_prime_UTR |
| GAGATCAAAACTAGAAGCAT+TGG | 0.459866 | tig0020278:-129141 | Msa1379380:CDS |
| CACACTGCTTGATTCGGAGA+AGG | 0.471367 | tig0020278:+129884 | None:intergenic |
| TCTGGAGACGAATACTCCTT+TGG | 0.473491 | tig0020278:+128975 | None:intergenic |
| TTCGGATCAGATTTGGTGAT+GGG | 0.474390 | tig0020278:-129203 | Msa1379380:CDS |
| TGATTCAAACACTTGCTTCG+AGG | 0.476019 | tig0020278:-128522 | Msa1379380:three_prime_UTR |
| TACTCTTCCTAGAGAGAGCC+AGG | 0.477900 | tig0020278:-128083 | Msa1379380:three_prime_UTR |
| AGCATATTCTGAATTGGATC+AGG | 0.480387 | tig0020278:+129020 | None:intergenic |
| CGTCAGGCATGTGATGAAGC+TGG | 0.484030 | tig0020278:+128278 | None:intergenic |
| TTGCATGTGAAGGTGAAGAT+AGG | 0.487421 | tig0020278:-128009 | Msa1379380:three_prime_UTR |
| TCTCAACATTCATCCTATCC+TGG | 0.491515 | tig0020278:+128065 | None:intergenic |
| GTTGGAGGACTAAAGATCAT+AGG | 0.492091 | tig0020278:-128436 | Msa1379380:three_prime_UTR |
| AGCGATGCAGATACTGTTCG+AGG | 0.503528 | tig0020278:-128668 | Msa1379380:three_prime_UTR |
| ACGAGACCAACTTCTTCGCT+TGG | 0.503960 | tig0020278:-128233 | Msa1379380:three_prime_UTR |
| ACATTCATAAAGAAGTTGCT+TGG | 0.509000 | tig0020278:+128894 | None:intergenic |
| ATCCTATCCTGGCTCTCTCT+AGG | 0.512100 | tig0020278:+128076 | None:intergenic |
| TCTTTACCAAGCGAAGAAGT+TGG | 0.520115 | tig0020278:+128227 | None:intergenic |
| TCGCGGGAAAATGGAGAGCT+AGG | 0.521293 | tig0020278:-127970 | Msa1379380:three_prime_UTR |
| GCTGCTAGACGGTCCGAAGA+AGG | 0.532544 | tig0020278:+128688 | None:intergenic |
| TCTGTGCAGCGATCCGTTGG+AGG | 0.533052 | tig0020278:-128451 | Msa1379380:three_prime_UTR |
| CGAAGCAAGTGTTTGAATCA+GGG | 0.537450 | tig0020278:+128525 | None:intergenic |
| GTAGAGATGTCAGAACTAGA+TGG | 0.537559 | tig0020278:+129269 | None:intergenic |
| GAGTCTGTGCAGCGATCCGT+TGG | 0.538684 | tig0020278:-128454 | Msa1379380:three_prime_UTR |
| TACCTTAAAACGCGATGTAG+CGG | 0.540118 | tig0020278:+127540 | None:intergenic |
| TCCAAAACTTGTAACGGTCG+TGG | 0.541218 | tig0020278:-128197 | Msa1379380:three_prime_UTR |
| TTTAAGTTGTTAACATAACC+AGG | 0.541846 | tig0020278:-127624 | Msa1379380:three_prime_UTR |
| TAAAATGGCCATCAGTGGGC+TGG | 0.545429 | tig0020278:-127506 | Msa1379380:three_prime_UTR |
| TTATAGAGCTTTGAAATGCA+AGG | 0.546542 | tig0020278:-128716 | Msa1379380:three_prime_UTR |
| TACTGTCGCCAGCCCACTGA+TGG | 0.547247 | tig0020278:+127498 | None:intergenic |
| TACAAGATAAAGGAGGAAAA+GGG | 0.547340 | tig0020278:-127860 | Msa1379380:three_prime_UTR |
| AGAGCTAGGATGACAATGGC+TGG | 0.548519 | tig0020278:-127956 | Msa1379380:three_prime_UTR |
| TTTGAATCCAAAACTTGTAA+CGG | 0.552516 | tig0020278:-128203 | Msa1379380:three_prime_UTR |
| TAACATAACCAGGAGGAAAA+GGG | 0.553597 | tig0020278:-127614 | Msa1379380:three_prime_UTR |
| ACTTGATTGTTGCTTCAGCA+TGG | 0.554425 | tig0020278:-127808 | Msa1379380:three_prime_UTR |
| AACGCGATGTAGCGGACATG+AGG | 0.554890 | tig0020278:+127548 | None:intergenic |
| TAGTGACATTGAGGAAGAAG+AGG | 0.556415 | tig0020278:-129099 | Msa1379380:CDS |
| ACGGATCGCTGCACAGACTC+AGG | 0.557758 | tig0020278:+128457 | None:intergenic |
| GAACAACTAGCAGAAACACT+TGG | 0.558635 | tig0020278:-128403 | Msa1379380:three_prime_UTR |
| ACTTGATGATAGTGACATTG+AGG | 0.558721 | tig0020278:-129108 | Msa1379380:CDS |
| TTTCGGATCAGATTTGGTGA+TGG | 0.559466 | tig0020278:-129204 | Msa1379380:CDS |
| ATATGGTAATTCTCAAAGCA+TGG | 0.562265 | tig0020278:-129075 | Msa1379380:CDS |
| CCGGTCAATCTAACATGTGA+TGG | 0.566500 | tig0020278:+128490 | None:intergenic |
| TAGTTAAAATGGCCATCAGT+GGG | 0.567643 | tig0020278:-127510 | Msa1379380:three_prime_UTR |
| CATCACATGTTAGATTGACC+GGG | 0.567991 | tig0020278:-128489 | Msa1379380:three_prime_UTR |
| CTCGTAACTCTCGCTCGAGT+AGG | 0.572630 | tig0020278:+129331 | None:intergenic |
| TTGAGAGGCAATGCTTGGCA+AGG | 0.577561 | tig0020278:-128048 | Msa1379380:three_prime_UTR |
| AATTGCAGCCTACATGGTGG+AGG | 0.577669 | tig0020278:-128776 | Msa1379380:three_prime_UTR |
| TAGGCTGCAATTCTTTGGGA+AGG | 0.583102 | tig0020278:+128787 | None:intergenic |
| CAAAACTAGAAGCATTGGAG+AGG | 0.583413 | tig0020278:-129136 | Msa1379380:CDS |
| GAATGTTGAGAGGCAATGCT+TGG | 0.583862 | tig0020278:-128053 | Msa1379380:three_prime_UTR |
| CTACAAGTTTCATGCCAACA+AGG | 0.584293 | tig0020278:-129250 | Msa1379380:CDS |
| TGTGCTACTGCAATTTCAGA+AGG | 0.584377 | tig0020278:-128874 | Msa1379380:CDS |
| GCCTGACGAGAGCGTTTCAA+CGG | 0.590858 | tig0020278:-128263 | Msa1379380:three_prime_UTR |
| TCCGGATTCAGCGAGGCGAG+CGG | 0.592435 | tig0020278:+128747 | None:intergenic |
| AGCATGAAACAGCTATGCTT+AGG | 0.600345 | tig0020278:-127591 | Msa1379380:three_prime_UTR |
| AATACTCCTTTGGTGAGTCA+TGG | 0.604923 | tig0020278:+128985 | None:intergenic |
| CACTAAGCTCAAATCGCCAA+AGG | 0.608012 | tig0020278:-129429 | Msa1379380:CDS |
| TATGATCTTTAGTCCTCCAA+CGG | 0.609253 | tig0020278:+128438 | None:intergenic |
| GTATCTGCATCGCTGCTAGA+CGG | 0.609923 | tig0020278:+128677 | None:intergenic |
| GTTAATACGGTTGCATGTGA+AGG | 0.612068 | tig0020278:-128019 | Msa1379380:three_prime_UTR |
| ATAGAACGGTATGAAGTCGC+GGG | 0.612894 | tig0020278:-127986 | Msa1379380:three_prime_UTR |
| AGACTCAGGATCATCAATCC+CGG | 0.614792 | tig0020278:+128471 | None:intergenic |
| TAACTATGCAATAACAGAAG+CGG | 0.616342 | tig0020278:-128611 | Msa1379380:three_prime_UTR |
| GATAGAACGGTATGAAGTCG+CGG | 0.616637 | tig0020278:-127987 | Msa1379380:three_prime_UTR |
| TCGTCGTGGAGAAGCTCTTG+TGG | 0.619304 | tig0020278:-128314 | Msa1379380:three_prime_UTR |
| CCTTTGGTGAGTCATGGTCA+TGG | 0.621918 | tig0020278:+128991 | None:intergenic |
| AAGGTGAAGATAGGATAGAA+CGG | 0.625100 | tig0020278:-128000 | Msa1379380:three_prime_UTR |
| TTCCTAGAGAGAGCCAGGAT+AGG | 0.625909 | tig0020278:-128078 | Msa1379380:three_prime_UTR |
| TGAGAGGCAATGCTTGGCAA+GGG | 0.635494 | tig0020278:-128047 | Msa1379380:three_prime_UTR |
| TCGATGCTTGATTGTCGTCG+TGG | 0.642078 | tig0020278:-128328 | Msa1379380:three_prime_UTR |
| ATAGTTAAAATGGCCATCAG+TGG | 0.643912 | tig0020278:-127511 | Msa1379380:three_prime_UTR |
| AAAACTAGAAGCATTGGAGA+GGG | 0.649054 | tig0020278:-129135 | Msa1379380:CDS |
| AGAAGATCCAATTAATGACA+TGG | 0.650375 | tig0020278:+129478 | None:intergenic |
| ATTGCAGCCTACATGGTGGA+GGG | 0.650477 | tig0020278:-128775 | Msa1379380:three_prime_UTR |
| GGCGAGTCCCTCCACCATGT+AGG | 0.652264 | tig0020278:+128768 | None:intergenic |
| GCTAGACGGTCCGAAGAAGG+AGG | 0.655079 | tig0020278:+128691 | None:intergenic |
| ATTCATAAAGAAGTTGCTTG+GGG | 0.655928 | tig0020278:+128896 | None:intergenic |
| ATGAGAATAAGAAATTTGGG+AGG | 0.658872 | tig0020278:+129382 | None:intergenic |
| AGGATAGGATGAATGTTGAG+AGG | 0.660140 | tig0020278:-128063 | Msa1379380:three_prime_UTR |
| AATTTCAGAAGGAAATGAAG+AGG | 0.662867 | tig0020278:-128863 | Msa1379380:CDS |
| ATGGAGAGCTAGGATGACAA+TGG | 0.667953 | tig0020278:-127960 | Msa1379380:three_prime_UTR |
| GTGTACAGAACTATTAAACA+AGG | 0.668012 | tig0020278:+127706 | None:intergenic |
| CCATGACCATGACTCACCAA+AGG | 0.671972 | tig0020278:-128991 | Msa1379380:CDS |
| CTTGAATTGAGACAATTCGT+CGG | 0.672967 | tig0020278:+128815 | None:intergenic |
| AATTTCGAGCGGTCTCATCG+AGG | 0.679065 | tig0020278:-128369 | Msa1379380:three_prime_UTR |
| TTTGTCATTTGAATTTCGAG+CGG | 0.680630 | tig0020278:-128380 | Msa1379380:three_prime_UTR |
| AAGAATTGCAGCCTACATGG+TGG | 0.682524 | tig0020278:-128779 | Msa1379380:three_prime_UTR |
| TGATAGGTACAAGATAAAGG+AGG | 0.692576 | tig0020278:-127867 | Msa1379380:three_prime_UTR |
| ACGACAATCAAGCATCGATG+AGG | 0.692866 | tig0020278:+128333 | None:intergenic |
| ATAAACCCGAATTTAAAACA+CGG | 0.716869 | tig0020278:+128640 | None:intergenic |
| TTCATGCCAACAAGGCAACG+TGG | 0.722675 | tig0020278:-129242 | Msa1379380:CDS |
| AAGTTGTTAACATAACCAGG+AGG | 0.731266 | tig0020278:-127621 | Msa1379380:three_prime_UTR |
| TGATTGTTGCTTCAGCATGG+AGG | 0.748962 | tig0020278:-127805 | Msa1379380:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTACAAAATATTATAG+TGG | + | tig0020278:127519-127538 | None:intergenic | 15.0% |
| !!! | AATATTTTGTAATGATAAAG+TGG | - | tig0020278:127523-127542 | Msa1379380:three_prime_UTR | 15.0% |
| !! | GATATGAATTATTATTATCT+TGG | + | tig0020278:129790-129809 | None:intergenic | 15.0% |
| !! | AGATAATAATAATTCATATC+AGG | - | tig0020278:129790-129809 | Msa1379380:intron | 15.0% |
| !!! | ATGATCAATGTTGATTTATT+TGG | - | tig0020278:127489-127508 | Msa1379380:three_prime_UTR | 20.0% |
| !! | ATGAATATGACAAAATATAC+TGG | + | tig0020278:127847-127866 | None:intergenic | 20.0% |
| !!! | TAGAAAATCCTTTAATTTTC+AGG | + | tig0020278:127874-127893 | None:intergenic | 20.0% |
| !! | CTTATGAGAATAAGAAATTT+GGG | + | tig0020278:128190-128209 | None:intergenic | 20.0% |
| !!! | AGAAATTTTCGTTATTTCTT+TGG | + | tig0020278:128646-128665 | None:intergenic | 20.0% |
| !! | AAGAAATAACGAAAATTTCT+AGG | - | tig0020278:128646-128665 | Msa1379380:three_prime_UTR | 20.0% |
| !!! | ATAGATTTTGATATCAATCA+AGG | - | tig0020278:129004-129023 | Msa1379380:CDS | 20.0% |
| !!! | TCAATGTTGATTTATTTGGA+AGG | - | tig0020278:127493-127512 | Msa1379380:three_prime_UTR | 25.0% |
| !!! | TAGTCAAACATAAGTTGATT+TGG | + | tig0020278:127560-127579 | None:intergenic | 25.0% |
| !! | AATCAGCTTTTGTTAGAAAA+AGG | - | tig0020278:127588-127607 | Msa1379380:three_prime_UTR | 25.0% |
| ! | TTACTAACTATGATATCACT+TGG | + | tig0020278:127638-127657 | None:intergenic | 25.0% |
| !! | TCATAGAATCTTTTCAGAAT+TGG | - | tig0020278:127735-127754 | Msa1379380:three_prime_UTR | 25.0% |
| ! | TCATCATACCTGAAAATTAA+AGG | - | tig0020278:127863-127882 | Msa1379380:three_prime_UTR | 25.0% |
| !! | ATTTTTCTGACTAAGTGTTT+TGG | - | tig0020278:128023-128042 | Msa1379380:three_prime_UTR | 25.0% |
| ! | GCTTATGAGAATAAGAAATT+TGG | + | tig0020278:128191-128210 | None:intergenic | 25.0% |
| ! | TTGATCCTAACATTATTGAT+TGG | - | tig0020278:128517-128536 | Msa1379380:three_prime_UTR | 25.0% |
| !! | TGATCCTAACATTATTGATT+GGG | - | tig0020278:128518-128537 | Msa1379380:three_prime_UTR | 25.0% |
| !!! | AATTTTCGTTATTTCTTTGG+TGG | + | tig0020278:128643-128662 | None:intergenic | 25.0% |
| !!! | AGCTCTATAAATACTTTTTC+CGG | + | tig0020278:128840-128859 | None:intergenic | 25.0% |
| !! | ATAAACCCGAATTTAAAACA+CGG | + | tig0020278:128929-128948 | None:intergenic | 25.0% |
| ! | TTTGAATCCAAAACTTGTAA+CGG | - | tig0020278:129363-129382 | Msa1379380:CDS | 25.0% |
| !!! | AGTACAACTTAACTTGTTTT+CGG | + | tig0020278:129678-129697 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGTTAACATAACC+AGG | - | tig0020278:129942-129961 | Msa1379380:intron | 25.0% |
| AGGTATGAAAATCATTCTCT+TGG | - | tig0020278:127608-127627 | Msa1379380:three_prime_UTR | 30.0% | |
| TGTATAGTTTCAATCTTAGC+AGG | - | tig0020278:127659-127678 | Msa1379380:three_prime_UTR | 30.0% | |
| ! | AATCTTTTCAGAATTGGAGT+TGG | - | tig0020278:127741-127760 | Msa1379380:three_prime_UTR | 30.0% |
| GTGAGAAAGCAAAAACTTTA+TGG | - | tig0020278:127999-128018 | Msa1379380:three_prime_UTR | 30.0% | |
| AGAAGATCCAATTAATGACA+TGG | + | tig0020278:128091-128110 | None:intergenic | 30.0% | |
| AAATTTGGGAGGAAAAATCA+GGG | + | tig0020278:128176-128195 | None:intergenic | 30.0% | |
| ATGAGAATAAGAAATTTGGG+AGG | + | tig0020278:128187-128206 | None:intergenic | 30.0% | |
| GTGAATTCAATTGAAGTTGA+TGG | - | tig0020278:128396-128415 | Msa1379380:three_prime_UTR | 30.0% | |
| ATATGGTAATTCTCAAAGCA+TGG | - | tig0020278:128491-128510 | Msa1379380:three_prime_UTR | 30.0% | |
| ATTCATAAAGAAGTTGCTTG+GGG | + | tig0020278:128673-128692 | None:intergenic | 30.0% | |
| CATTCATAAAGAAGTTGCTT+GGG | + | tig0020278:128674-128693 | None:intergenic | 30.0% | |
| ACATTCATAAAGAAGTTGCT+TGG | + | tig0020278:128675-128694 | None:intergenic | 30.0% | |
| AATTTCAGAAGGAAATGAAG+AGG | - | tig0020278:128703-128722 | Msa1379380:three_prime_UTR | 30.0% | |
| !! | TTATAGAGCTTTGAAATGCA+AGG | - | tig0020278:128850-128869 | Msa1379380:CDS | 30.0% |
| !! | GTTTGTCCGTGTTTTAAATT+CGG | - | tig0020278:128920-128939 | Msa1379380:CDS | 30.0% |
| !! | TTTGTCCGTGTTTTAAATTC+GGG | - | tig0020278:128921-128940 | Msa1379380:CDS | 30.0% |
| TAACTATGCAATAACAGAAG+CGG | - | tig0020278:128955-128974 | Msa1379380:CDS | 30.0% | |
| ! | TTTGTCATTTGAATTTCGAG+CGG | - | tig0020278:129186-129205 | Msa1379380:CDS | 30.0% |
| TCAACAAATCTCTGCAAAAA+CGG | + | tig0020278:129421-129440 | None:intergenic | 30.0% | |
| ! | AAGTTAAGTTGTACTGTGAT+AGG | - | tig0020278:129683-129702 | Msa1379380:intron | 30.0% |
| TACAAGATAAAGGAGGAAAA+GGG | - | tig0020278:129706-129725 | Msa1379380:intron | 30.0% | |
| GTGTACAGAACTATTAAACA+AGG | + | tig0020278:129863-129882 | None:intergenic | 30.0% | |
| GGTATTGTCCATAGTTAAAA+TGG | - | tig0020278:130045-130064 | Msa1379380:intron | 30.0% | |
| AACTTTCACACTGCTTGATT+CGG | + | tig0020278:127691-127710 | None:intergenic | 35.0% | |
| AGAATTGGAGTTGGACATAA+TGG | - | tig0020278:127750-127769 | Msa1379380:three_prime_UTR | 35.0% | |
| TCAAATCATCATGAATCAGC+TGG | + | tig0020278:127784-127803 | None:intergenic | 35.0% | |
| !! | TTCTTTTGTTTCTCCCATCA+TGG | - | tig0020278:127905-127924 | Msa1379380:three_prime_UTR | 35.0% |
| TTATGTGTGAACTGAATGAC+AGG | - | tig0020278:128060-128079 | Msa1379380:three_prime_UTR | 35.0% | |
| GGTACAACCATGTCATTAAT+TGG | - | tig0020278:128081-128100 | Msa1379380:three_prime_UTR | 35.0% | |
| ! | TTAGTGCTTTTATGTGATGG+TGG | + | tig0020278:128123-128142 | None:intergenic | 35.0% |
| ! | AGCTTAGTGCTTTTATGTGA+TGG | + | tig0020278:128126-128145 | None:intergenic | 35.0% |
| GAAATTTGGGAGGAAAAATC+AGG | + | tig0020278:128177-128196 | None:intergenic | 35.0% | |
| ! | GAGATCAAAACTAGAAGCAT+TGG | - | tig0020278:128425-128444 | Msa1379380:three_prime_UTR | 35.0% |
| !! | AAAACTAGAAGCATTGGAGA+GGG | - | tig0020278:128431-128450 | Msa1379380:three_prime_UTR | 35.0% |
| ! | ACTTGATGATAGTGACATTG+AGG | - | tig0020278:128458-128477 | Msa1379380:three_prime_UTR | 35.0% |
| ATTGAGGAAGAAGAGGAATA+TGG | - | tig0020278:128474-128493 | Msa1379380:three_prime_UTR | 35.0% | |
| TCAGCCCAATCAATAATGTT+AGG | + | tig0020278:128525-128544 | None:intergenic | 35.0% | |
| AGCATATTCTGAATTGGATC+AGG | + | tig0020278:128549-128568 | None:intergenic | 35.0% | |
| AACAGCAGCATATTCTGAAT+TGG | + | tig0020278:128555-128574 | None:intergenic | 35.0% | |
| ATGCTGCTAATATTGGAATC+TGG | + | tig0020278:128612-128631 | None:intergenic | 35.0% | |
| CTTGAATTGAGACAATTCGT+CGG | + | tig0020278:128754-128773 | None:intergenic | 35.0% | |
| TATGATCTTTAGTCCTCCAA+CGG | + | tig0020278:129131-129150 | None:intergenic | 35.0% | |
| AACAAATCTCTGCAAAAACG+GGG | + | tig0020278:129419-129438 | None:intergenic | 35.0% | |
| CAACAAATCTCTGCAAAAAC+GGG | + | tig0020278:129420-129439 | None:intergenic | 35.0% | |
| GGCAAGGGATATTGTTAATA+CGG | - | tig0020278:129534-129553 | Msa1379380:intron | 35.0% | |
| AAGGTGAAGATAGGATAGAA+CGG | - | tig0020278:129566-129585 | Msa1379380:intron | 35.0% | |
| CTGTGATAGGTACAAGATAA+AGG | - | tig0020278:129696-129715 | Msa1379380:intron | 35.0% | |
| TGATAGGTACAAGATAAAGG+AGG | - | tig0020278:129699-129718 | Msa1379380:intron | 35.0% | |
| GTACAAGATAAAGGAGGAAA+AGG | - | tig0020278:129705-129724 | Msa1379380:intron | 35.0% | |
| AAGTTGTTAACATAACCAGG+AGG | - | tig0020278:129945-129964 | Msa1379380:intron | 35.0% | |
| TTAACATAACCAGGAGGAAA+AGG | - | tig0020278:129951-129970 | Msa1379380:intron | 35.0% | |
| TAACATAACCAGGAGGAAAA+GGG | - | tig0020278:129952-129971 | Msa1379380:intron | 35.0% | |
| !!! | ACTGATGGCCATTTTAACTA+TGG | + | tig0020278:130056-130075 | None:intergenic | 35.0% |
| ATAGTTAAAATGGCCATCAG+TGG | - | tig0020278:130055-130074 | Msa1379380:intron | 35.0% | |
| TAGTTAAAATGGCCATCAGT+GGG | - | tig0020278:130056-130075 | Msa1379380:intron | 35.0% | |
| TCTTGTTGACCGTATTCTCA+AGG | - | tig0020278:127977-127996 | Msa1379380:three_prime_UTR | 40.0% | |
| GCTTTCTCACCTTGAGAATA+CGG | + | tig0020278:127989-128008 | None:intergenic | 40.0% | |
| !! | GGGTTAACATCGATTTCCTT+TGG | + | tig0020278:128156-128175 | None:intergenic | 40.0% |
| GTAGAGATGTCAGAACTAGA+TGG | + | tig0020278:128300-128319 | None:intergenic | 40.0% | |
| CTACAAGTTTCATGCCAACA+AGG | - | tig0020278:128316-128335 | Msa1379380:three_prime_UTR | 40.0% | |
| GTCCAATTTCGGATCAGATT+TGG | - | tig0020278:128356-128375 | Msa1379380:three_prime_UTR | 40.0% | |
| CACCAAATCTGATCCGAAAT+TGG | + | tig0020278:128361-128380 | None:intergenic | 40.0% | |
| !! | TTTCGGATCAGATTTGGTGA+TGG | - | tig0020278:128362-128381 | Msa1379380:three_prime_UTR | 40.0% |
| !! | TTCGGATCAGATTTGGTGAT+GGG | - | tig0020278:128363-128382 | Msa1379380:three_prime_UTR | 40.0% |
| !! | CAAAACTAGAAGCATTGGAG+AGG | - | tig0020278:128430-128449 | Msa1379380:three_prime_UTR | 40.0% |
| TAGTGACATTGAGGAAGAAG+AGG | - | tig0020278:128467-128486 | Msa1379380:three_prime_UTR | 40.0% | |
| AATACTCCTTTGGTGAGTCA+TGG | + | tig0020278:128584-128603 | None:intergenic | 40.0% | |
| GCTACTGATGCTGCTAATAT+TGG | + | tig0020278:128619-128638 | None:intergenic | 40.0% | |
| ! | TGTGCTACTGCAATTTCAGA+AGG | - | tig0020278:128692-128711 | Msa1379380:three_prime_UTR | 40.0% |
| CGACGAATTGTCTCAATTCA+AGG | - | tig0020278:128752-128771 | Msa1379380:three_prime_UTR | 40.0% | |
| CATGTAGGCTGCAATTCTTT+GGG | + | tig0020278:128786-128805 | None:intergenic | 40.0% | |
| CGAAGCAAGTGTTTGAATCA+GGG | + | tig0020278:129044-129063 | None:intergenic | 40.0% | |
| TCGAAGCAAGTGTTTGAATC+AGG | + | tig0020278:129045-129064 | None:intergenic | 40.0% | |
| TGATTCAAACACTTGCTTCG+AGG | - | tig0020278:129044-129063 | Msa1379380:CDS | 40.0% | |
| CCATCACATGTTAGATTGAC+CGG | - | tig0020278:129076-129095 | Msa1379380:CDS | 40.0% | |
| CATCACATGTTAGATTGACC+GGG | - | tig0020278:129077-129096 | Msa1379380:CDS | 40.0% | |
| GTTGGAGGACTAAAGATCAT+AGG | - | tig0020278:129130-129149 | Msa1379380:CDS | 40.0% | |
| GAACAACTAGCAGAAACACT+TGG | - | tig0020278:129163-129182 | Msa1379380:CDS | 40.0% | |
| TCTTTACCAAGCGAAGAAGT+TGG | + | tig0020278:129342-129361 | None:intergenic | 40.0% | |
| TCTCAACATTCATCCTATCC+TGG | + | tig0020278:129504-129523 | None:intergenic | 40.0% | |
| AGGATAGGATGAATGTTGAG+AGG | - | tig0020278:129503-129522 | Msa1379380:intron | 40.0% | |
| GTTAATACGGTTGCATGTGA+AGG | - | tig0020278:129547-129566 | Msa1379380:intron | 40.0% | |
| TTGCATGTGAAGGTGAAGAT+AGG | - | tig0020278:129557-129576 | Msa1379380:intron | 40.0% | |
| TCACTCACATTTGTGCTCAT+TGG | + | tig0020278:129649-129668 | None:intergenic | 40.0% | |
| !! | GAAAAGGGTGCACTTCATTT+TGG | - | tig0020278:129721-129740 | Msa1379380:intron | 40.0% |
| ! | ACTTGATTGTTGCTTCAGCA+TGG | - | tig0020278:129758-129777 | Msa1379380:intron | 40.0% |
| AGCATGAAACAGCTATGCTT+AGG | - | tig0020278:129975-129994 | Msa1379380:intron | 40.0% | |
| TACCTTAAAACGCGATGTAG+CGG | + | tig0020278:130029-130048 | None:intergenic | 40.0% | |
| TAGCATGACTGTGCCATGAT+GGG | + | tig0020278:127921-127940 | None:intergenic | 45.0% | |
| CACTAAGCTCAAATCGCCAA+AGG | - | tig0020278:128137-128156 | Msa1379380:three_prime_UTR | 45.0% | |
| !! | GGTGCTGATCAGTCCAATTT+CGG | - | tig0020278:128345-128364 | Msa1379380:three_prime_UTR | 45.0% |
| TCTGGAGACGAATACTCCTT+TGG | + | tig0020278:128594-128613 | None:intergenic | 45.0% | |
| ! | TAGGCTGCAATTCTTTGGGA+AGG | + | tig0020278:128782-128801 | None:intergenic | 45.0% |
| CCATGTAGGCTGCAATTCTT+TGG | + | tig0020278:128787-128806 | None:intergenic | 45.0% | |
| CCAAAGAATTGCAGCCTACA+TGG | - | tig0020278:128784-128803 | Msa1379380:three_prime_UTR | 45.0% | |
| AAGAATTGCAGCCTACATGG+TGG | - | tig0020278:128787-128806 | Msa1379380:three_prime_UTR | 45.0% | |
| !!! | TACTTTTTCCGGATTCAGCG+AGG | + | tig0020278:128829-128848 | None:intergenic | 45.0% |
| ATGCAAGGAACCTCCTTCTT+CGG | - | tig0020278:128865-128884 | Msa1379380:CDS | 45.0% | |
| CCGGTCAATCTAACATGTGA+TGG | + | tig0020278:129079-129098 | None:intergenic | 45.0% | |
| AGACTCAGGATCATCAATCC+CGG | + | tig0020278:129098-129117 | None:intergenic | 45.0% | |
| !! | ACGACAATCAAGCATCGATG+AGG | + | tig0020278:129236-129255 | None:intergenic | 45.0% |
| TCCAAAACTTGTAACGGTCG+TGG | - | tig0020278:129369-129388 | Msa1379380:CDS | 45.0% | |
| ! | TCCACGACCGTTACAAGTTT+TGG | + | tig0020278:129373-129392 | None:intergenic | 45.0% |
| AAATCTCTGCAAAAACGGGG+CGG | + | tig0020278:129416-129435 | None:intergenic | 45.0% | |
| GAATGTTGAGAGGCAATGCT+TGG | - | tig0020278:129513-129532 | Msa1379380:intron | 45.0% | |
| GATAGAACGGTATGAAGTCG+CGG | - | tig0020278:129579-129598 | Msa1379380:intron | 45.0% | |
| ATAGAACGGTATGAAGTCGC+GGG | - | tig0020278:129580-129599 | Msa1379380:intron | 45.0% | |
| ATGGAGAGCTAGGATGACAA+TGG | - | tig0020278:129606-129625 | Msa1379380:intron | 45.0% | |
| !! | AGGGTGCACTTCATTTTGGT+TGG | - | tig0020278:129725-129744 | Msa1379380:intron | 45.0% |
| !!! | GGGTGCACTTCATTTTGGTT+GGG | - | tig0020278:129726-129745 | Msa1379380:intron | 45.0% |
| ! | TGATTGTTGCTTCAGCATGG+AGG | - | tig0020278:129761-129780 | Msa1379380:intron | 45.0% |
| !! | CACACTGCTTGATTCGGAGA+AGG | + | tig0020278:127685-127704 | None:intergenic | 50.0% |
| CTAGCATGACTGTGCCATGA+TGG | + | tig0020278:127922-127941 | None:intergenic | 50.0% | |
| TTCATGCCAACAAGGCAACG+TGG | - | tig0020278:128324-128343 | Msa1379380:three_prime_UTR | 50.0% | |
| CCTTTGGTGAGTCATGGTCA+TGG | + | tig0020278:128578-128597 | None:intergenic | 50.0% | |
| CCATGACCATGACTCACCAA+AGG | - | tig0020278:128575-128594 | Msa1379380:three_prime_UTR | 50.0% | |
| AATTGCAGCCTACATGGTGG+AGG | - | tig0020278:128790-128809 | Msa1379380:three_prime_UTR | 50.0% | |
| ! | ATTGCAGCCTACATGGTGGA+GGG | - | tig0020278:128791-128810 | Msa1379380:three_prime_UTR | 50.0% |
| GTATCTGCATCGCTGCTAGA+CGG | + | tig0020278:128892-128911 | None:intergenic | 50.0% | |
| AGCGATGCAGATACTGTTCG+AGG | - | tig0020278:128898-128917 | Msa1379380:CDS | 50.0% | |
| AATTTCGAGCGGTCTCATCG+AGG | - | tig0020278:129197-129216 | Msa1379380:CDS | 50.0% | |
| TCGATGCTTGATTGTCGTCG+TGG | - | tig0020278:129238-129257 | Msa1379380:CDS | 50.0% | |
| ACGAGACCAACTTCTTCGCT+TGG | - | tig0020278:129333-129352 | Msa1379380:CDS | 50.0% | |
| TACTCTTCCTAGAGAGAGCC+AGG | - | tig0020278:129483-129502 | Msa1379380:CDS | 50.0% | |
| TTCCTAGAGAGAGCCAGGAT+AGG | - | tig0020278:129488-129507 | Msa1379380:intron | 50.0% | |
| ! | ATCCTATCCTGGCTCTCTCT+AGG | + | tig0020278:129493-129512 | None:intergenic | 50.0% |
| TTGAGAGGCAATGCTTGGCA+AGG | - | tig0020278:129518-129537 | Msa1379380:intron | 50.0% | |
| TGAGAGGCAATGCTTGGCAA+GGG | - | tig0020278:129519-129538 | Msa1379380:intron | 50.0% | |
| GGTATGAAGTCGCGGGAAAA+TGG | - | tig0020278:129587-129606 | Msa1379380:intron | 50.0% | |
| AGAGCTAGGATGACAATGGC+TGG | - | tig0020278:129610-129629 | Msa1379380:intron | 50.0% | |
| ! | TTCATGCTCCCTTTTCCTCC+TGG | + | tig0020278:129963-129982 | None:intergenic | 50.0% |
| ! | GTCCGCTACATCGCGTTTTA+AGG | - | tig0020278:130024-130043 | Msa1379380:intron | 50.0% |
| TAAAATGGCCATCAGTGGGC+TGG | - | tig0020278:130060-130079 | Msa1379380:intron | 50.0% | |
| CTCGTAACTCTCGCTCGAGT+AGG | + | tig0020278:128238-128257 | None:intergenic | 55.0% | |
| TCAGCACCACGTTGCCTTGT+TGG | + | tig0020278:128333-128352 | None:intergenic | 55.0% | |
| TCGTCGTGGAGAAGCTCTTG+TGG | - | tig0020278:129252-129271 | Msa1379380:CDS | 55.0% | |
| CGTCAGGCATGTGATGAAGC+TGG | + | tig0020278:129291-129310 | None:intergenic | 55.0% | |
| !! | GCCTGACGAGAGCGTTTCAA+CGG | - | tig0020278:129303-129322 | Msa1379380:CDS | 55.0% |
| ACCGTTGAAACGCTCTCGTC+AGG | + | tig0020278:129307-129326 | None:intergenic | 55.0% | |
| CTGCAAAAACGGGGCGGTAT+TGG | + | tig0020278:129410-129429 | None:intergenic | 55.0% | |
| TCGCGGGAAAATGGAGAGCT+AGG | - | tig0020278:129596-129615 | Msa1379380:intron | 55.0% | |
| !! | AACGCGATGTAGCGGACATG+AGG | + | tig0020278:130021-130040 | None:intergenic | 55.0% |
| GCTAGACGGTCCGAAGAAGG+AGG | + | tig0020278:128878-128897 | None:intergenic | 60.0% | |
| GCTGCTAGACGGTCCGAAGA+AGG | + | tig0020278:128881-128900 | None:intergenic | 60.0% | |
| ACGGATCGCTGCACAGACTC+AGG | + | tig0020278:129112-129131 | None:intergenic | 60.0% | |
| GAGTCTGTGCAGCGATCCGT+TGG | - | tig0020278:129112-129131 | Msa1379380:CDS | 60.0% | |
| TCTGTGCAGCGATCCGTTGG+AGG | - | tig0020278:129115-129134 | Msa1379380:CDS | 60.0% | |
| TACTGTCGCCAGCCCACTGA+TGG | + | tig0020278:130071-130090 | None:intergenic | 60.0% | |
| GGCGAGTCCCTCCACCATGT+AGG | + | tig0020278:128801-128820 | None:intergenic | 65.0% | |
| TCCGGATTCAGCGAGGCGAG+CGG | + | tig0020278:128822-128841 | None:intergenic | 65.0% | |
| GCCGCTCGCCTCGCTGAATC+CGG | - | tig0020278:128818-128837 | Msa1379380:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020278 | gene | 127489 | 130099 | 127489 | ID=Msa1379380;Name=Msa1379380 |
| tig0020278 | mRNA | 127489 | 130099 | 127489 | ID=Msa1379380-mRNA-1;Parent=Msa1379380;Name=Msa1379380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.25|0.25|1|1|4|1359|236 |
| tig0020278 | exon | 127489 | 129506 | 127489 | ID=Msa1379380-mRNA-1:exon:6504;Parent=Msa1379380-mRNA-1 |
| tig0020278 | exon | 129871 | 129907 | 129871 | ID=Msa1379380-mRNA-1:exon:6503;Parent=Msa1379380-mRNA-1 |
| tig0020278 | exon | 129979 | 129984 | 129979 | ID=Msa1379380-mRNA-1:exon:6502;Parent=Msa1379380-mRNA-1 |
| tig0020278 | exon | 130091 | 130099 | 130091 | ID=Msa1379380-mRNA-1:exon:6501;Parent=Msa1379380-mRNA-1 |
| tig0020278 | CDS | 130091 | 130099 | 130091 | ID=Msa1379380-mRNA-1:cds;Parent=Msa1379380-mRNA-1 |
| tig0020278 | CDS | 129979 | 129984 | 129979 | ID=Msa1379380-mRNA-1:cds;Parent=Msa1379380-mRNA-1 |
| tig0020278 | CDS | 129871 | 129907 | 129871 | ID=Msa1379380-mRNA-1:cds;Parent=Msa1379380-mRNA-1 |
| tig0020278 | CDS | 128848 | 129506 | 128848 | ID=Msa1379380-mRNA-1:cds;Parent=Msa1379380-mRNA-1 |
| tig0020278 | three_prime_UTR | 127489 | 128847 | 127489 | ID=Msa1379380-mRNA-1:three_prime_utr;Parent=Msa1379380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
