AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471070 MtrunA17_Chr3g0125811 94.690 565 30 0 1 565 6 570 0.0 1080
Msa0471070 MtrunA17_Chr1g0159461 69.950 599 139 7 1 565 1 592 0.0 794
Msa0471070 MtrunA17_Chr5g0447691 50.962 416 198 1 156 565 129 544 6.35e-153 449
Msa0471070 MtrunA17_Chr2g0319091 54.324 370 169 0 196 565 210 579 3.04e-145 431
Msa0471070 MtrunA17_Chr3g0101141 49.606 381 191 1 186 565 162 542 1.67e-139 415
Msa0471070 MtrunA17_Chr5g0445331 51.036 386 184 3 185 565 147 532 1.29e-137 410
Msa0471070 MtrunA17_Chr4g0076091 47.568 370 193 1 196 564 173 542 2.47e-126 381
Msa0471070 MtrunA17_Chr2g0290241 47.170 371 195 1 196 565 55 425 2.51e-124 372
Msa0471070 MtrunA17_Chr7g0236851 38.767 454 255 10 119 564 218 656 7.57e-87 282
Msa0471070 MtrunA17_Chr6g0468561 40.409 391 191 10 196 565 293 662 1.82e-80 265
Msa0471070 MtrunA17_Chr7g0224271 37.726 387 211 5 197 565 299 673 1.08e-76 256
Msa0471070 MtrunA17_Chr3g0110971 34.987 383 218 8 199 565 220 587 1.43e-66 227
Msa0471070 MtrunA17_Chr8g0376381 35.657 373 214 10 199 565 170 522 2.19e-65 222
Msa0471070 MtrunA17_Chr8g0357601 34.908 381 223 7 199 565 183 552 1.71e-64 220
Msa0471070 MtrunA17_Chr2g0306641 33.830 470 272 18 115 565 38 487 1.70e-63 216
Msa0471070 MtrunA17_Chr4g0031721 31.892 370 251 1 196 564 314 683 4.46e-63 219
Msa0471070 MtrunA17_Chr7g0245601 36.339 366 218 6 201 565 441 792 3.86e-62 219
Msa0471070 MtrunA17_Chr4g0057891 32.723 382 235 5 197 565 148 520 4.56e-61 210
Msa0471070 MtrunA17_Chr7g0238891 30.479 397 269 2 176 565 344 740 1.92e-59 210
Msa0471070 MtrunA17_Chr4g0031741 31.707 369 247 4 198 564 284 649 7.73e-58 204
Msa0471070 MtrunA17_Chr2g0328381 30.108 372 253 3 196 564 273 640 2.04e-56 200
Msa0471070 MtrunA17_Chr2g0328341 30.376 372 252 3 196 564 270 637 3.20e-56 199
Msa0471070 MtrunA17_Chr4g0038851 28.791 455 253 8 171 565 26 469 3.76e-56 196
Msa0471070 MtrunA17_Chr4g0038761 35.310 371 219 10 201 565 87 442 3.51e-55 192
Msa0471070 MtrunA17_Chr4g0031711 29.144 374 260 3 196 564 359 732 3.95e-55 198
Msa0471070 MtrunA17_Chr4g0031701 28.054 442 303 5 130 562 188 623 1.18e-54 195
Msa0471070 MtrunA17_Chr4g0057291 35.602 382 219 14 198 564 292 661 1.62e-54 196
Msa0471070 MtrunA17_Chr2g0328391 30.585 376 250 7 196 564 297 668 2.89e-54 195
Msa0471070 MtrunA17_Chr4g0031731 28.217 443 303 5 130 563 188 624 3.83e-54 194
Msa0471070 MtrunA17_Chr5g0396491 28.605 430 240 7 197 565 55 478 4.07e-54 191
Msa0471070 MtrunA17_Chr3g0085681 28.504 421 245 5 195 565 22 436 9.78e-52 183
Msa0471070 MtrunA17_Chr4g0039661 32.181 376 232 8 199 565 194 555 9.84e-51 183
Msa0471070 MtrunA17_Chr2g0328411 28.385 384 269 4 182 564 275 653 3.11e-50 184
Msa0471070 MtrunA17_Chr5g0401131 31.486 397 247 10 185 565 103 490 3.79e-50 180
Msa0471070 MtrunA17_Chr2g0328431 27.097 465 311 9 117 564 200 653 1.35e-48 179
Msa0471070 MtrunA17_Chr3g0114841 31.863 408 237 12 185 564 105 499 6.68e-48 174
Msa0471070 MtrunA17_Chr2g0328401 30.000 340 229 5 198 534 290 623 1.29e-46 173
Msa0471070 MtrunA17_Chr1g0200401 29.471 397 236 12 197 565 79 459 9.30e-46 167
Msa0471070 MtrunA17_Chr2g0328361 30.295 373 226 8 196 564 272 614 2.20e-45 169
Msa0471070 MtrunA17_Chr1g0183641 32.181 376 224 11 198 564 123 476 9.15e-45 165
Msa0471070 MtrunA17_Chr5g0401421 27.962 422 242 8 196 564 33 445 2.63e-43 160
Msa0471070 MtrunA17_Chr2g0329591 29.049 389 246 8 197 565 73 451 3.10e-41 154
Msa0471070 MtrunA17_Chr4g0053901 26.835 436 273 7 174 564 33 467 8.04e-39 148
Msa0471070 MtrunA17_Chr5g0424131 30.548 383 247 10 197 564 120 498 1.59e-38 148
Msa0471070 MtrunA17_Chr3g0085361 26.934 349 199 4 266 565 9 350 1.01e-37 142
Msa0471070 MtrunA17_Chr2g0328371 31.474 251 167 2 269 518 2 248 1.19e-37 139
Msa0471070 MtrunA17_Chr2g0294461 26.098 410 263 10 178 565 194 585 1.63e-30 125
Msa0471070 MtrunA17_Chr7g0230731 27.688 372 248 8 199 565 373 728 4.93e-29 122
Msa0471070 MtrunA17_Chr7g0230771 27.957 372 247 8 199 565 376 731 1.72e-28 120
Msa0471070 MtrunA17_Chr7g0270031 26.649 379 256 10 197 565 188 554 6.75e-27 114
Msa0471070 MtrunA17_Chr2g0294471 25.455 385 256 10 199 565 205 576 9.98e-27 114
Msa0471070 MtrunA17_Chr8g0383981 27.441 379 241 12 198 564 139 495 5.00e-25 108
Msa0471070 MtrunA17_Chr4g0012071 25.995 377 247 11 199 565 197 551 7.11e-24 105
Msa0471070 MtrunA17_Chr2g0323111 29.310 174 121 2 392 564 133 305 1.07e-20 93.2
Msa0471070 MtrunA17_Chr1g0194621 27.875 287 185 9 287 565 246 518 6.79e-20 93.2
Msa0471070 MtrunA17_Chr8g0344101 23.077 403 266 15 190 565 215 600 1.03e-19 92.8
Msa0471070 MtrunA17_Chr8g0373561 21.891 402 236 14 199 565 183 541 6.65e-13 71.2
Msa0471070 MtrunA17_Chr4g0037781 32.558 172 89 6 171 337 39 188 4.36e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471070 AT1G21450.1 59.496 595 194 16 1 565 16 593 0.0 644
Msa0471070 AT5G48150.1 52.911 395 183 2 172 565 98 490 2.75e-146 431
Msa0471070 AT5G48150.4 52.911 395 183 2 172 565 98 490 2.75e-146 431
Msa0471070 AT5G48150.2 52.911 395 183 2 172 565 98 490 2.75e-146 431
Msa0471070 AT5G48150.3 52.911 395 183 2 172 565 98 490 2.75e-146 431
Msa0471070 AT1G50600.3 51.948 385 184 1 182 565 142 526 7.19e-142 421
Msa0471070 AT1G50600.1 51.948 385 184 1 182 565 213 597 5.98e-141 421
Msa0471070 AT1G50600.2 51.948 385 184 1 182 565 217 601 9.98e-141 421
Msa0471070 AT2G04890.1 51.892 370 171 1 196 565 51 413 4.65e-135 399
Msa0471070 AT4G17230.1 47.027 370 196 0 196 565 156 525 3.17e-124 375
Msa0471070 AT4G17230.2 47.027 370 196 0 196 565 156 525 3.17e-124 375
Msa0471070 AT5G52510.1 39.481 385 208 5 196 565 266 640 4.10e-85 277
Msa0471070 AT1G66350.1 37.097 372 208 9 199 565 156 506 2.86e-69 232
Msa0471070 AT3G03450.1 36.340 377 215 9 199 565 184 545 9.00e-68 229
Msa0471070 AT5G17490.1 35.242 454 246 13 136 565 87 516 2.50e-67 227
Msa0471070 AT3G54220.1 36.856 369 213 8 201 564 296 649 4.47e-66 227
Msa0471070 AT1G07530.1 33.760 391 254 3 176 564 377 764 2.22e-64 224
Msa0471070 AT5G66770.1 36.340 377 217 9 199 565 221 584 1.99e-60 210
Msa0471070 AT1G14920.1 33.780 373 225 10 199 565 173 529 1.68e-59 207
Msa0471070 AT2G01570.1 34.301 379 215 12 199 565 225 581 2.98e-58 204
Msa0471070 AT2G29060.2 31.980 394 252 5 179 564 269 654 2.09e-57 204
Msa0471070 AT2G29060.1 31.980 394 252 5 179 564 306 691 3.01e-57 204
Msa0471070 AT2G37650.2 29.919 371 257 2 196 565 333 701 1.78e-56 202
Msa0471070 AT2G37650.1 29.919 371 257 2 196 565 345 713 1.94e-56 202
Msa0471070 AT5G59450.1 29.777 403 271 5 172 565 199 598 5.42e-56 199
Msa0471070 AT2G29065.1 30.423 378 254 5 196 564 250 627 9.86e-54 193
Msa0471070 AT3G46600.2 29.919 371 258 2 196 565 2 371 1.17e-53 187
Msa0471070 AT3G46600.1 29.919 371 258 2 196 565 210 579 1.95e-52 189
Msa0471070 AT3G46600.3 29.919 371 258 2 196 565 178 547 2.07e-52 188
Msa0471070 AT5G41920.1 32.718 379 223 10 198 565 43 400 1.96e-51 182
Msa0471070 AT3G50650.1 33.983 359 209 7 221 565 198 542 1.80e-50 182
Msa0471070 AT1G07520.2 27.820 399 272 5 182 564 130 528 7.10e-50 181
Msa0471070 AT1G07520.4 27.820 399 272 5 182 564 130 528 7.10e-50 181
Msa0471070 AT1G07520.1 27.820 399 272 5 182 564 294 692 1.32e-49 182
Msa0471070 AT1G07520.3 27.820 399 272 5 182 564 295 693 1.32e-49 182
Msa0471070 AT4G37650.1 29.206 428 259 11 165 565 119 529 1.60e-48 177
Msa0471070 AT1G63100.1 31.362 389 233 8 198 564 252 628 1.46e-43 164
Msa0471070 AT1G63100.2 33.141 347 212 7 198 536 277 611 1.64e-43 165
Msa0471070 AT4G08250.1 29.825 342 220 7 233 564 145 476 4.97e-42 158
Msa0471070 AT1G55580.1 27.119 413 249 9 196 565 42 445 1.99e-40 152
Msa0471070 AT3G49950.1 27.720 386 256 9 196 564 28 407 8.57e-39 147
Msa0471070 AT1G50420.1 32.857 210 132 2 197 403 56 259 1.17e-30 125
Msa0471070 AT1G50420.1 37.748 151 91 2 417 565 330 479 9.52e-28 117
Msa0471070 AT3G13840.1 26.000 400 267 11 178 565 128 510 4.61e-22 100
Msa0471070 AT3G60630.1 25.501 349 229 10 231 565 291 622 3.74e-21 97.8
Msa0471070 AT2G45160.1 26.214 309 202 8 268 565 346 639 5.74e-21 97.4
Msa0471070 AT4G00150.1 24.069 349 234 10 222 565 232 554 9.99e-19 90.1
Msa0471070 AT5G67411.1 33.668 199 119 6 315 502 2 198 6.00e-18 82.8
Msa0471070 AT4G36710.1 23.864 352 244 9 222 565 150 485 3.38e-16 82.0

Find 115 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATGAGAATAAGAAATT+TGG 0.178504 3_3:+73286221 None:intergenic
GGTACAACCATGTCATTAAT+TGG 0.248675 3_3:-73286328 None:intergenic
CCATGTAGGCTGCAATTCTT+TGG 0.255636 3_3:+73285624 None:intergenic
GAAAAGGGTGCACTTCATTT+TGG 0.257256 3_3:-73284687 Msa0471070:CDS
CACCAAATCTGATCCGAAAT+TGG 0.280682 3_3:+73286051 None:intergenic
GGTATGAAGTCGCGGGAAAA+TGG 0.287860 3_3:-73284821 Msa0471070:CDS
GCTACTGATGCTGCTAATAT+TGG 0.307471 3_3:+73285793 None:intergenic
TCCACGACCGTTACAAGTTT+TGG 0.308347 3_3:+73285038 None:intergenic
AAGAAATAACGAAAATTTCT+AGG 0.316566 3_3:-73285763 Msa0471070:CDS
GTCCAATTTCGGATCAGATT+TGG 0.328151 3_3:-73286053 Msa0471070:CDS
TCGAAGCAAGTGTTTGAATC+AGG 0.332729 3_3:+73285366 None:intergenic
TTGATCCTAACATTATTGAT+TGG 0.340862 3_3:-73285892 Msa0471070:CDS
CTTATGAGAATAAGAAATTT+GGG 0.359390 3_3:+73286222 None:intergenic
TCAGCACCACGTTGCCTTGT+TGG 0.374411 3_3:+73286079 None:intergenic
GGTGCTGATCAGTCCAATTT+CGG 0.378562 3_3:-73286064 Msa0471070:CDS
TCACTCACATTTGTGCTCAT+TGG 0.383131 3_3:+73284762 None:intergenic
GTACAAGATAAAGGAGGAAA+AGG 0.383813 3_3:-73284703 Msa0471070:CDS
GCCGCTCGCCTCGCTGAATC+CGG 0.387906 3_3:-73285590 Msa0471070:CDS
ATTGAGGAAGAAGAGGAATA+TGG 0.391911 3_3:-73285935 Msa0471070:CDS
TGATCCTAACATTATTGATT+GGG 0.392056 3_3:-73285891 Msa0471070:CDS
CGACGAATTGTCTCAATTCA+AGG 0.402603 3_3:-73285656 Msa0471070:CDS
GGCAAGGGATATTGTTAATA+CGG 0.403210 3_3:-73284874 Msa0471070:CDS
CATTCATAAAGAAGTTGCTT+GGG 0.414263 3_3:+73285737 None:intergenic
AACAGCAGCATATTCTGAAT+TGG 0.421315 3_3:+73285857 None:intergenic
CTGTGATAGGTACAAGATAA+AGG 0.425096 3_3:-73284712 Msa0471070:CDS
GGGTTAACATCGATTTCCTT+TGG 0.428305 3_3:+73286256 None:intergenic
GTGAATTCAATTGAAGTTGA+TGG 0.432801 3_3:-73286013 Msa0471070:CDS
TCAGCCCAATCAATAATGTT+AGG 0.434921 3_3:+73285887 None:intergenic
ACCGTTGAAACGCTCTCGTC+AGG 0.440496 3_3:+73285104 None:intergenic
CCATCACATGTTAGATTGAC+CGG 0.440788 3_3:-73285332 Msa0471070:CDS
ATGCTGCTAATATTGGAATC+TGG 0.446519 3_3:+73285800 None:intergenic
CATGTAGGCTGCAATTCTTT+GGG 0.448246 3_3:+73285625 None:intergenic
ATGCAAGGAACCTCCTTCTT+CGG 0.450058 3_3:-73285543 Msa0471070:CDS
AAGTTAAGTTGTACTGTGAT+AGG 0.450787 3_3:-73284725 Msa0471070:CDS
CCAAAGAATTGCAGCCTACA+TGG 0.451697 3_3:-73285624 Msa0471070:CDS
GAGATCAAAACTAGAAGCAT+TGG 0.459866 3_3:-73285984 Msa0471070:CDS
TCTGGAGACGAATACTCCTT+TGG 0.473491 3_3:+73285818 None:intergenic
TTCGGATCAGATTTGGTGAT+GGG 0.474390 3_3:-73286046 Msa0471070:CDS
TGATTCAAACACTTGCTTCG+AGG 0.476019 3_3:-73285364 Msa0471070:CDS
TACTCTTCCTAGAGAGAGCC+AGG 0.477900 3_3:-73284925 Msa0471070:CDS
AGCATATTCTGAATTGGATC+AGG 0.480387 3_3:+73285863 None:intergenic
CGTCAGGCATGTGATGAAGC+TGG 0.484030 3_3:+73285120 None:intergenic
TTGCATGTGAAGGTGAAGAT+AGG 0.487421 3_3:-73284851 Msa0471070:CDS
TCTCAACATTCATCCTATCC+TGG 0.491515 3_3:+73284907 None:intergenic
GTTGGAGGACTAAAGATCAT+AGG 0.492091 3_3:-73285278 Msa0471070:CDS
AGCGATGCAGATACTGTTCG+AGG 0.503528 3_3:-73285510 Msa0471070:CDS
ACGAGACCAACTTCTTCGCT+TGG 0.503960 3_3:-73285075 Msa0471070:CDS
ACATTCATAAAGAAGTTGCT+TGG 0.509000 3_3:+73285736 None:intergenic
ATCCTATCCTGGCTCTCTCT+AGG 0.512100 3_3:+73284918 None:intergenic
TCTTTACCAAGCGAAGAAGT+TGG 0.520115 3_3:+73285069 None:intergenic
TCGCGGGAAAATGGAGAGCT+AGG 0.521293 3_3:-73284812 Msa0471070:CDS
GCTGCTAGACGGTCCGAAGA+AGG 0.532544 3_3:+73285530 None:intergenic
TCTGTGCAGCGATCCGTTGG+AGG 0.533052 3_3:-73285293 Msa0471070:CDS
CGAAGCAAGTGTTTGAATCA+GGG 0.537450 3_3:+73285367 None:intergenic
GTAGAGATGTCAGAACTAGA+TGG 0.537559 3_3:+73286112 None:intergenic
GAGTCTGTGCAGCGATCCGT+TGG 0.538684 3_3:-73285296 Msa0471070:CDS
TCCAAAACTTGTAACGGTCG+TGG 0.541218 3_3:-73285039 Msa0471070:CDS
TTATAGAGCTTTGAAATGCA+AGG 0.546542 3_3:-73285558 Msa0471070:CDS
TACAAGATAAAGGAGGAAAA+GGG 0.547340 3_3:-73284702 Msa0471070:CDS
AGAGCTAGGATGACAATGGC+TGG 0.548519 3_3:-73284798 Msa0471070:CDS
TTTGAATCCAAAACTTGTAA+CGG 0.552516 3_3:-73285045 Msa0471070:CDS
ACTTGATTGTTGCTTCAGCA+TGG 0.554425 3_3:-73284650 Msa0471070:CDS
TAGTGACATTGAGGAAGAAG+AGG 0.556415 3_3:-73285942 Msa0471070:CDS
ACGGATCGCTGCACAGACTC+AGG 0.557758 3_3:+73285299 None:intergenic
GAACAACTAGCAGAAACACT+TGG 0.558635 3_3:-73285245 Msa0471070:CDS
ACTTGATGATAGTGACATTG+AGG 0.558721 3_3:-73285951 Msa0471070:CDS
CCTTTGGTGAGTCATGATCA+TGG 0.558992 3_3:+73285834 None:intergenic
TTTCGGATCAGATTTGGTGA+TGG 0.559466 3_3:-73286047 Msa0471070:CDS
ATATGGTAATTCTCAAAGCA+TGG 0.562265 3_3:-73285918 Msa0471070:CDS
CCGGTCAATCTAACATGTGA+TGG 0.566500 3_3:+73285332 None:intergenic
CATCACATGTTAGATTGACC+GGG 0.567991 3_3:-73285331 Msa0471070:CDS
CTCGTAACTCTCGCTCGAGT+AGG 0.572630 3_3:+73286174 None:intergenic
TTGAGAGGCAATGCTTGGCA+AGG 0.577561 3_3:-73284890 Msa0471070:CDS
AATTGCAGCCTACATGGTGG+AGG 0.577669 3_3:-73285618 Msa0471070:CDS
TAGGCTGCAATTCTTTGGGA+AGG 0.583102 3_3:+73285629 None:intergenic
CAAAACTAGAAGCATTGGAG+AGG 0.583413 3_3:-73285979 Msa0471070:CDS
GAATGTTGAGAGGCAATGCT+TGG 0.583862 3_3:-73284895 Msa0471070:CDS
CTACAAGTTTCATGCCAACA+AGG 0.584293 3_3:-73286093 Msa0471070:CDS
TGTGCTACTGCAATTTCAGA+AGG 0.584377 3_3:-73285716 Msa0471070:CDS
GCCTGACGAGAGCGTTTCAA+CGG 0.590858 3_3:-73285105 Msa0471070:CDS
TCCGGATTCAGCGAGGCGAG+CGG 0.592435 3_3:+73285589 None:intergenic
CACTAAGCTCAAATCGCCAA+AGG 0.608012 3_3:-73286272 Msa0471070:CDS
TATGATCTTTAGTCCTCCAA+CGG 0.609253 3_3:+73285280 None:intergenic
GTATCTGCATCGCTGCTAGA+CGG 0.609923 3_3:+73285519 None:intergenic
ATTCATAAAGAAGTTGCTTG+GGG 0.610084 3_3:+73285738 None:intergenic
GTTAATACGGTTGCATGTGA+AGG 0.612068 3_3:-73284861 Msa0471070:CDS
ATAGAACGGTATGAAGTCGC+GGG 0.612894 3_3:-73284828 Msa0471070:CDS
AGACTCAGGATCATCAATCC+CGG 0.614792 3_3:+73285313 None:intergenic
TAACTATGCAATAACAGAAG+CGG 0.616342 3_3:-73285453 Msa0471070:CDS
GATAGAACGGTATGAAGTCG+CGG 0.616637 3_3:-73284829 Msa0471070:CDS
TCGTCGTGGAGAAGCTCTTG+TGG 0.619304 3_3:-73285156 Msa0471070:CDS
AAGGTGAAGATAGGATAGAA+CGG 0.625100 3_3:-73284842 Msa0471070:CDS
TTCCTAGAGAGAGCCAGGAT+AGG 0.625909 3_3:-73284920 Msa0471070:CDS
TGAGAGGCAATGCTTGGCAA+GGG 0.635494 3_3:-73284889 Msa0471070:CDS
TCGATGCTTGATTGTCGTCG+TGG 0.642078 3_3:-73285170 Msa0471070:CDS
AAAACTAGAAGCATTGGAGA+GGG 0.649054 3_3:-73285978 Msa0471070:CDS
AGAAGATCCAATTAATGACA+TGG 0.650375 3_3:+73286321 None:intergenic
ATTGCAGCCTACATGGTGGA+GGG 0.650477 3_3:-73285617 Msa0471070:CDS
GGCGAGTCCCTCCACCATGT+AGG 0.652264 3_3:+73285610 None:intergenic
GCTAGACGGTCCGAAGAAGG+AGG 0.655079 3_3:+73285533 None:intergenic
TTCATAAAGAAGTTGCTTGG+GGG 0.656482 3_3:+73285739 None:intergenic
CCATGATCATGACTCACCAA+AGG 0.657257 3_3:-73285834 Msa0471070:CDS
ATGAGAATAAGAAATTTGGG+AGG 0.658872 3_3:+73286225 None:intergenic
AGGATAGGATGAATGTTGAG+AGG 0.660140 3_3:-73284905 Msa0471070:CDS
AATTTCAGAAGGAAATGAAG+AGG 0.662867 3_3:-73285705 Msa0471070:CDS
ATGGAGAGCTAGGATGACAA+TGG 0.667953 3_3:-73284802 Msa0471070:CDS
CTTGAATTGAGACAATTCGT+CGG 0.672967 3_3:+73285657 None:intergenic
AATTTCGAGCGGTCTCATCG+AGG 0.679065 3_3:-73285211 Msa0471070:CDS
TTTGTCATTTGAATTTCGAG+CGG 0.680630 3_3:-73285222 Msa0471070:CDS
AAGAATTGCAGCCTACATGG+TGG 0.682524 3_3:-73285621 Msa0471070:CDS
TGATAGGTACAAGATAAAGG+AGG 0.692576 3_3:-73284709 Msa0471070:CDS
ACGACAATCAAGCATCGATG+AGG 0.692866 3_3:+73285175 None:intergenic
ATAAACCCGAATTTAAAACA+CGG 0.716869 3_3:+73285482 None:intergenic
TTCATGCCAACAAGGCAACG+TGG 0.722675 3_3:-73286085 Msa0471070:CDS
TGATTGTTGCTTCAGCATGG+AGG 0.748962 3_3:-73284647 Msa0471070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATGAGAATAAGAAATTT+GGG + chr3_3:73284744-73284763 None:intergenic 20.0%
!!! AGAAATTTTCGTTATTTCTT+TGG + chr3_3:73285200-73285219 None:intergenic 20.0%
!! AAGAAATAACGAAAATTTCT+AGG - chr3_3:73285200-73285219 Msa0471070:CDS 20.0%
!!! ATAGATTTTGATATCAATCA+AGG - chr3_3:73285559-73285578 Msa0471070:CDS 20.0%
!! CTTATGAGAATAAGAAATTT+GGG + chr3_3:73284744-73284763 None:intergenic 20.0%
!!! AGAAATTTTCGTTATTTCTT+TGG + chr3_3:73285200-73285219 None:intergenic 20.0%
!! AAGAAATAACGAAAATTTCT+AGG - chr3_3:73285200-73285219 Msa0471070:CDS 20.0%
!!! ATAGATTTTGATATCAATCA+AGG - chr3_3:73285559-73285578 Msa0471070:CDS 20.0%
! GCTTATGAGAATAAGAAATT+TGG + chr3_3:73284745-73284764 None:intergenic 25.0%
! TTGATCCTAACATTATTGAT+TGG - chr3_3:73285071-73285090 Msa0471070:CDS 25.0%
!! TGATCCTAACATTATTGATT+GGG - chr3_3:73285072-73285091 Msa0471070:CDS 25.0%
!!! AATTTTCGTTATTTCTTTGG+TGG + chr3_3:73285197-73285216 None:intergenic 25.0%
!!! AGCTCTATAAATACTTTTTC+CGG + chr3_3:73285395-73285414 None:intergenic 25.0%
!! ATAAACCCGAATTTAAAACA+CGG + chr3_3:73285484-73285503 None:intergenic 25.0%
! TTTGAATCCAAAACTTGTAA+CGG - chr3_3:73285918-73285937 Msa0471070:CDS 25.0%
!!! AGTACAACTTAACTTGTTTT+CGG + chr3_3:73286233-73286252 None:intergenic 25.0%
! GCTTATGAGAATAAGAAATT+TGG + chr3_3:73284745-73284764 None:intergenic 25.0%
! TTGATCCTAACATTATTGAT+TGG - chr3_3:73285071-73285090 Msa0471070:CDS 25.0%
!! TGATCCTAACATTATTGATT+GGG - chr3_3:73285072-73285091 Msa0471070:CDS 25.0%
!!! AATTTTCGTTATTTCTTTGG+TGG + chr3_3:73285197-73285216 None:intergenic 25.0%
!!! AGCTCTATAAATACTTTTTC+CGG + chr3_3:73285395-73285414 None:intergenic 25.0%
!! ATAAACCCGAATTTAAAACA+CGG + chr3_3:73285484-73285503 None:intergenic 25.0%
! TTTGAATCCAAAACTTGTAA+CGG - chr3_3:73285918-73285937 Msa0471070:CDS 25.0%
!!! AGTACAACTTAACTTGTTTT+CGG + chr3_3:73286233-73286252 None:intergenic 25.0%
AAATTTGGGAGGAAAAATCA+GGG + chr3_3:73284730-73284749 None:intergenic 30.0%
ATGAGAATAAGAAATTTGGG+AGG + chr3_3:73284741-73284760 None:intergenic 30.0%
GTGAATTCAATTGAAGTTGA+TGG - chr3_3:73284950-73284969 Msa0471070:CDS 30.0%
ATATGGTAATTCTCAAAGCA+TGG - chr3_3:73285045-73285064 Msa0471070:CDS 30.0%
ATTCATAAAGAAGTTGCTTG+GGG + chr3_3:73285228-73285247 None:intergenic 30.0%
CATTCATAAAGAAGTTGCTT+GGG + chr3_3:73285229-73285248 None:intergenic 30.0%
ACATTCATAAAGAAGTTGCT+TGG + chr3_3:73285230-73285249 None:intergenic 30.0%
AATTTCAGAAGGAAATGAAG+AGG - chr3_3:73285258-73285277 Msa0471070:CDS 30.0%
!! TTATAGAGCTTTGAAATGCA+AGG - chr3_3:73285405-73285424 Msa0471070:CDS 30.0%
!! GTTTGTCCGTGTTTTAAATT+CGG - chr3_3:73285475-73285494 Msa0471070:CDS 30.0%
!! TTTGTCCGTGTTTTAAATTC+GGG - chr3_3:73285476-73285495 Msa0471070:CDS 30.0%
TAACTATGCAATAACAGAAG+CGG - chr3_3:73285510-73285529 Msa0471070:CDS 30.0%
! TTTGTCATTTGAATTTCGAG+CGG - chr3_3:73285741-73285760 Msa0471070:CDS 30.0%
TCAACAAATCTCTGCAAAAA+CGG + chr3_3:73285976-73285995 None:intergenic 30.0%
! AAGTTAAGTTGTACTGTGAT+AGG - chr3_3:73286238-73286257 Msa0471070:CDS 30.0%
TACAAGATAAAGGAGGAAAA+GGG - chr3_3:73286261-73286280 Msa0471070:CDS 30.0%
AAATTTGGGAGGAAAAATCA+GGG + chr3_3:73284730-73284749 None:intergenic 30.0%
ATGAGAATAAGAAATTTGGG+AGG + chr3_3:73284741-73284760 None:intergenic 30.0%
GTGAATTCAATTGAAGTTGA+TGG - chr3_3:73284950-73284969 Msa0471070:CDS 30.0%
ATATGGTAATTCTCAAAGCA+TGG - chr3_3:73285045-73285064 Msa0471070:CDS 30.0%
ATTCATAAAGAAGTTGCTTG+GGG + chr3_3:73285228-73285247 None:intergenic 30.0%
CATTCATAAAGAAGTTGCTT+GGG + chr3_3:73285229-73285248 None:intergenic 30.0%
ACATTCATAAAGAAGTTGCT+TGG + chr3_3:73285230-73285249 None:intergenic 30.0%
AATTTCAGAAGGAAATGAAG+AGG - chr3_3:73285258-73285277 Msa0471070:CDS 30.0%
!! TTATAGAGCTTTGAAATGCA+AGG - chr3_3:73285405-73285424 Msa0471070:CDS 30.0%
!! GTTTGTCCGTGTTTTAAATT+CGG - chr3_3:73285475-73285494 Msa0471070:CDS 30.0%
!! TTTGTCCGTGTTTTAAATTC+GGG - chr3_3:73285476-73285495 Msa0471070:CDS 30.0%
TAACTATGCAATAACAGAAG+CGG - chr3_3:73285510-73285529 Msa0471070:CDS 30.0%
! TTTGTCATTTGAATTTCGAG+CGG - chr3_3:73285741-73285760 Msa0471070:CDS 30.0%
TCAACAAATCTCTGCAAAAA+CGG + chr3_3:73285976-73285995 None:intergenic 30.0%
! AAGTTAAGTTGTACTGTGAT+AGG - chr3_3:73286238-73286257 Msa0471070:CDS 30.0%
TACAAGATAAAGGAGGAAAA+GGG - chr3_3:73286261-73286280 Msa0471070:CDS 30.0%
! TTAGTGCTTTTATGTGATGG+TGG + chr3_3:73284677-73284696 None:intergenic 35.0%
! AGCTTAGTGCTTTTATGTGA+TGG + chr3_3:73284680-73284699 None:intergenic 35.0%
GAAATTTGGGAGGAAAAATC+AGG + chr3_3:73284731-73284750 None:intergenic 35.0%
! GAGATCAAAACTAGAAGCAT+TGG - chr3_3:73284979-73284998 Msa0471070:CDS 35.0%
!! AAAACTAGAAGCATTGGAGA+GGG - chr3_3:73284985-73285004 Msa0471070:CDS 35.0%
! ACTTGATGATAGTGACATTG+AGG - chr3_3:73285012-73285031 Msa0471070:CDS 35.0%
ATTGAGGAAGAAGAGGAATA+TGG - chr3_3:73285028-73285047 Msa0471070:CDS 35.0%
TCAGCCCAATCAATAATGTT+AGG + chr3_3:73285079-73285098 None:intergenic 35.0%
AGCATATTCTGAATTGGATC+AGG + chr3_3:73285103-73285122 None:intergenic 35.0%
AACAGCAGCATATTCTGAAT+TGG + chr3_3:73285109-73285128 None:intergenic 35.0%
ATGCTGCTAATATTGGAATC+TGG + chr3_3:73285166-73285185 None:intergenic 35.0%
TTCATAAAGAAGTTGCTTGG+GGG + chr3_3:73285227-73285246 None:intergenic 35.0%
CTTGAATTGAGACAATTCGT+CGG + chr3_3:73285309-73285328 None:intergenic 35.0%
TATGATCTTTAGTCCTCCAA+CGG + chr3_3:73285686-73285705 None:intergenic 35.0%
AACAAATCTCTGCAAAAACG+GGG + chr3_3:73285974-73285993 None:intergenic 35.0%
CAACAAATCTCTGCAAAAAC+GGG + chr3_3:73285975-73285994 None:intergenic 35.0%
GGCAAGGGATATTGTTAATA+CGG - chr3_3:73286089-73286108 Msa0471070:CDS 35.0%
AAGGTGAAGATAGGATAGAA+CGG - chr3_3:73286121-73286140 Msa0471070:CDS 35.0%
CTGTGATAGGTACAAGATAA+AGG - chr3_3:73286251-73286270 Msa0471070:CDS 35.0%
TGATAGGTACAAGATAAAGG+AGG - chr3_3:73286254-73286273 Msa0471070:CDS 35.0%
GTACAAGATAAAGGAGGAAA+AGG - chr3_3:73286260-73286279 Msa0471070:CDS 35.0%
! TTAGTGCTTTTATGTGATGG+TGG + chr3_3:73284677-73284696 None:intergenic 35.0%
! AGCTTAGTGCTTTTATGTGA+TGG + chr3_3:73284680-73284699 None:intergenic 35.0%
GAAATTTGGGAGGAAAAATC+AGG + chr3_3:73284731-73284750 None:intergenic 35.0%
! GAGATCAAAACTAGAAGCAT+TGG - chr3_3:73284979-73284998 Msa0471070:CDS 35.0%
!! AAAACTAGAAGCATTGGAGA+GGG - chr3_3:73284985-73285004 Msa0471070:CDS 35.0%
! ACTTGATGATAGTGACATTG+AGG - chr3_3:73285012-73285031 Msa0471070:CDS 35.0%
ATTGAGGAAGAAGAGGAATA+TGG - chr3_3:73285028-73285047 Msa0471070:CDS 35.0%
TCAGCCCAATCAATAATGTT+AGG + chr3_3:73285079-73285098 None:intergenic 35.0%
AGCATATTCTGAATTGGATC+AGG + chr3_3:73285103-73285122 None:intergenic 35.0%
AACAGCAGCATATTCTGAAT+TGG + chr3_3:73285109-73285128 None:intergenic 35.0%
ATGCTGCTAATATTGGAATC+TGG + chr3_3:73285166-73285185 None:intergenic 35.0%
TTCATAAAGAAGTTGCTTGG+GGG + chr3_3:73285227-73285246 None:intergenic 35.0%
CTTGAATTGAGACAATTCGT+CGG + chr3_3:73285309-73285328 None:intergenic 35.0%
TATGATCTTTAGTCCTCCAA+CGG + chr3_3:73285686-73285705 None:intergenic 35.0%
AACAAATCTCTGCAAAAACG+GGG + chr3_3:73285974-73285993 None:intergenic 35.0%
CAACAAATCTCTGCAAAAAC+GGG + chr3_3:73285975-73285994 None:intergenic 35.0%
GGCAAGGGATATTGTTAATA+CGG - chr3_3:73286089-73286108 Msa0471070:CDS 35.0%
AAGGTGAAGATAGGATAGAA+CGG - chr3_3:73286121-73286140 Msa0471070:CDS 35.0%
CTGTGATAGGTACAAGATAA+AGG - chr3_3:73286251-73286270 Msa0471070:CDS 35.0%
TGATAGGTACAAGATAAAGG+AGG - chr3_3:73286254-73286273 Msa0471070:CDS 35.0%
GTACAAGATAAAGGAGGAAA+AGG - chr3_3:73286260-73286279 Msa0471070:CDS 35.0%
!! GGGTTAACATCGATTTCCTT+TGG + chr3_3:73284710-73284729 None:intergenic 40.0%
GTAGAGATGTCAGAACTAGA+TGG + chr3_3:73284854-73284873 None:intergenic 40.0%
CTACAAGTTTCATGCCAACA+AGG - chr3_3:73284870-73284889 Msa0471070:CDS 40.0%
GTCCAATTTCGGATCAGATT+TGG - chr3_3:73284910-73284929 Msa0471070:CDS 40.0%
CACCAAATCTGATCCGAAAT+TGG + chr3_3:73284915-73284934 None:intergenic 40.0%
!! TTTCGGATCAGATTTGGTGA+TGG - chr3_3:73284916-73284935 Msa0471070:CDS 40.0%
!! TTCGGATCAGATTTGGTGAT+GGG - chr3_3:73284917-73284936 Msa0471070:CDS 40.0%
!! CAAAACTAGAAGCATTGGAG+AGG - chr3_3:73284984-73285003 Msa0471070:CDS 40.0%
TAGTGACATTGAGGAAGAAG+AGG - chr3_3:73285021-73285040 Msa0471070:CDS 40.0%
GCTACTGATGCTGCTAATAT+TGG + chr3_3:73285173-73285192 None:intergenic 40.0%
! TGTGCTACTGCAATTTCAGA+AGG - chr3_3:73285247-73285266 Msa0471070:CDS 40.0%
CGACGAATTGTCTCAATTCA+AGG - chr3_3:73285307-73285326 Msa0471070:CDS 40.0%
CATGTAGGCTGCAATTCTTT+GGG + chr3_3:73285341-73285360 None:intergenic 40.0%
CGAAGCAAGTGTTTGAATCA+GGG + chr3_3:73285599-73285618 None:intergenic 40.0%
TCGAAGCAAGTGTTTGAATC+AGG + chr3_3:73285600-73285619 None:intergenic 40.0%
TGATTCAAACACTTGCTTCG+AGG - chr3_3:73285599-73285618 Msa0471070:CDS 40.0%
CCATCACATGTTAGATTGAC+CGG - chr3_3:73285631-73285650 Msa0471070:CDS 40.0%
CATCACATGTTAGATTGACC+GGG - chr3_3:73285632-73285651 Msa0471070:CDS 40.0%
GTTGGAGGACTAAAGATCAT+AGG - chr3_3:73285685-73285704 Msa0471070:CDS 40.0%
GAACAACTAGCAGAAACACT+TGG - chr3_3:73285718-73285737 Msa0471070:CDS 40.0%
TCTTTACCAAGCGAAGAAGT+TGG + chr3_3:73285897-73285916 None:intergenic 40.0%
TCTCAACATTCATCCTATCC+TGG + chr3_3:73286059-73286078 None:intergenic 40.0%
AGGATAGGATGAATGTTGAG+AGG - chr3_3:73286058-73286077 Msa0471070:CDS 40.0%
GTTAATACGGTTGCATGTGA+AGG - chr3_3:73286102-73286121 Msa0471070:CDS 40.0%
TTGCATGTGAAGGTGAAGAT+AGG - chr3_3:73286112-73286131 Msa0471070:CDS 40.0%
TCACTCACATTTGTGCTCAT+TGG + chr3_3:73286204-73286223 None:intergenic 40.0%
!! GAAAAGGGTGCACTTCATTT+TGG - chr3_3:73286276-73286295 Msa0471070:CDS 40.0%
! ACTTGATTGTTGCTTCAGCA+TGG - chr3_3:73286313-73286332 Msa0471070:CDS 40.0%
!! GGGTTAACATCGATTTCCTT+TGG + chr3_3:73284710-73284729 None:intergenic 40.0%
GTAGAGATGTCAGAACTAGA+TGG + chr3_3:73284854-73284873 None:intergenic 40.0%
CTACAAGTTTCATGCCAACA+AGG - chr3_3:73284870-73284889 Msa0471070:CDS 40.0%
GTCCAATTTCGGATCAGATT+TGG - chr3_3:73284910-73284929 Msa0471070:CDS 40.0%
CACCAAATCTGATCCGAAAT+TGG + chr3_3:73284915-73284934 None:intergenic 40.0%
!! TTTCGGATCAGATTTGGTGA+TGG - chr3_3:73284916-73284935 Msa0471070:CDS 40.0%
!! TTCGGATCAGATTTGGTGAT+GGG - chr3_3:73284917-73284936 Msa0471070:CDS 40.0%
!! CAAAACTAGAAGCATTGGAG+AGG - chr3_3:73284984-73285003 Msa0471070:CDS 40.0%
TAGTGACATTGAGGAAGAAG+AGG - chr3_3:73285021-73285040 Msa0471070:CDS 40.0%
GCTACTGATGCTGCTAATAT+TGG + chr3_3:73285173-73285192 None:intergenic 40.0%
! TGTGCTACTGCAATTTCAGA+AGG - chr3_3:73285247-73285266 Msa0471070:CDS 40.0%
CGACGAATTGTCTCAATTCA+AGG - chr3_3:73285307-73285326 Msa0471070:CDS 40.0%
CATGTAGGCTGCAATTCTTT+GGG + chr3_3:73285341-73285360 None:intergenic 40.0%
CGAAGCAAGTGTTTGAATCA+GGG + chr3_3:73285599-73285618 None:intergenic 40.0%
TCGAAGCAAGTGTTTGAATC+AGG + chr3_3:73285600-73285619 None:intergenic 40.0%
TGATTCAAACACTTGCTTCG+AGG - chr3_3:73285599-73285618 Msa0471070:CDS 40.0%
CCATCACATGTTAGATTGAC+CGG - chr3_3:73285631-73285650 Msa0471070:CDS 40.0%
CATCACATGTTAGATTGACC+GGG - chr3_3:73285632-73285651 Msa0471070:CDS 40.0%
GTTGGAGGACTAAAGATCAT+AGG - chr3_3:73285685-73285704 Msa0471070:CDS 40.0%
GAACAACTAGCAGAAACACT+TGG - chr3_3:73285718-73285737 Msa0471070:CDS 40.0%
TCTTTACCAAGCGAAGAAGT+TGG + chr3_3:73285897-73285916 None:intergenic 40.0%
TCTCAACATTCATCCTATCC+TGG + chr3_3:73286059-73286078 None:intergenic 40.0%
AGGATAGGATGAATGTTGAG+AGG - chr3_3:73286058-73286077 Msa0471070:CDS 40.0%
GTTAATACGGTTGCATGTGA+AGG - chr3_3:73286102-73286121 Msa0471070:CDS 40.0%
TTGCATGTGAAGGTGAAGAT+AGG - chr3_3:73286112-73286131 Msa0471070:CDS 40.0%
TCACTCACATTTGTGCTCAT+TGG + chr3_3:73286204-73286223 None:intergenic 40.0%
!! GAAAAGGGTGCACTTCATTT+TGG - chr3_3:73286276-73286295 Msa0471070:CDS 40.0%
! ACTTGATTGTTGCTTCAGCA+TGG - chr3_3:73286313-73286332 Msa0471070:CDS 40.0%
CACTAAGCTCAAATCGCCAA+AGG - chr3_3:73284691-73284710 Msa0471070:CDS 45.0%
!! GGTGCTGATCAGTCCAATTT+CGG - chr3_3:73284899-73284918 Msa0471070:CDS 45.0%
CCTTTGGTGAGTCATGATCA+TGG + chr3_3:73285132-73285151 None:intergenic 45.0%
CCATGATCATGACTCACCAA+AGG - chr3_3:73285129-73285148 Msa0471070:CDS 45.0%
TCTGGAGACGAATACTCCTT+TGG + chr3_3:73285148-73285167 None:intergenic 45.0%
! TAGGCTGCAATTCTTTGGGA+AGG + chr3_3:73285337-73285356 None:intergenic 45.0%
CCATGTAGGCTGCAATTCTT+TGG + chr3_3:73285342-73285361 None:intergenic 45.0%
CCAAAGAATTGCAGCCTACA+TGG - chr3_3:73285339-73285358 Msa0471070:CDS 45.0%
AAGAATTGCAGCCTACATGG+TGG - chr3_3:73285342-73285361 Msa0471070:CDS 45.0%
!!! TACTTTTTCCGGATTCAGCG+AGG + chr3_3:73285384-73285403 None:intergenic 45.0%
ATGCAAGGAACCTCCTTCTT+CGG - chr3_3:73285420-73285439 Msa0471070:CDS 45.0%
CCGGTCAATCTAACATGTGA+TGG + chr3_3:73285634-73285653 None:intergenic 45.0%
AGACTCAGGATCATCAATCC+CGG + chr3_3:73285653-73285672 None:intergenic 45.0%
!! ACGACAATCAAGCATCGATG+AGG + chr3_3:73285791-73285810 None:intergenic 45.0%
TCCAAAACTTGTAACGGTCG+TGG - chr3_3:73285924-73285943 Msa0471070:CDS 45.0%
! TCCACGACCGTTACAAGTTT+TGG + chr3_3:73285928-73285947 None:intergenic 45.0%
AAATCTCTGCAAAAACGGGG+CGG + chr3_3:73285971-73285990 None:intergenic 45.0%
GAATGTTGAGAGGCAATGCT+TGG - chr3_3:73286068-73286087 Msa0471070:CDS 45.0%
GATAGAACGGTATGAAGTCG+CGG - chr3_3:73286134-73286153 Msa0471070:CDS 45.0%
ATAGAACGGTATGAAGTCGC+GGG - chr3_3:73286135-73286154 Msa0471070:CDS 45.0%
ATGGAGAGCTAGGATGACAA+TGG - chr3_3:73286161-73286180 Msa0471070:CDS 45.0%
!! AGGGTGCACTTCATTTTGGT+TGG - chr3_3:73286280-73286299 Msa0471070:CDS 45.0%
!!! GGGTGCACTTCATTTTGGTT+GGG - chr3_3:73286281-73286300 Msa0471070:CDS 45.0%
! TGATTGTTGCTTCAGCATGG+AGG - chr3_3:73286316-73286335 Msa0471070:CDS 45.0%
CACTAAGCTCAAATCGCCAA+AGG - chr3_3:73284691-73284710 Msa0471070:CDS 45.0%
!! GGTGCTGATCAGTCCAATTT+CGG - chr3_3:73284899-73284918 Msa0471070:CDS 45.0%
CCTTTGGTGAGTCATGATCA+TGG + chr3_3:73285132-73285151 None:intergenic 45.0%
CCATGATCATGACTCACCAA+AGG - chr3_3:73285129-73285148 Msa0471070:CDS 45.0%
TCTGGAGACGAATACTCCTT+TGG + chr3_3:73285148-73285167 None:intergenic 45.0%
! TAGGCTGCAATTCTTTGGGA+AGG + chr3_3:73285337-73285356 None:intergenic 45.0%
CCATGTAGGCTGCAATTCTT+TGG + chr3_3:73285342-73285361 None:intergenic 45.0%
CCAAAGAATTGCAGCCTACA+TGG - chr3_3:73285339-73285358 Msa0471070:CDS 45.0%
AAGAATTGCAGCCTACATGG+TGG - chr3_3:73285342-73285361 Msa0471070:CDS 45.0%
!!! TACTTTTTCCGGATTCAGCG+AGG + chr3_3:73285384-73285403 None:intergenic 45.0%
ATGCAAGGAACCTCCTTCTT+CGG - chr3_3:73285420-73285439 Msa0471070:CDS 45.0%
CCGGTCAATCTAACATGTGA+TGG + chr3_3:73285634-73285653 None:intergenic 45.0%
AGACTCAGGATCATCAATCC+CGG + chr3_3:73285653-73285672 None:intergenic 45.0%
!! ACGACAATCAAGCATCGATG+AGG + chr3_3:73285791-73285810 None:intergenic 45.0%
TCCAAAACTTGTAACGGTCG+TGG - chr3_3:73285924-73285943 Msa0471070:CDS 45.0%
! TCCACGACCGTTACAAGTTT+TGG + chr3_3:73285928-73285947 None:intergenic 45.0%
AAATCTCTGCAAAAACGGGG+CGG + chr3_3:73285971-73285990 None:intergenic 45.0%
GAATGTTGAGAGGCAATGCT+TGG - chr3_3:73286068-73286087 Msa0471070:CDS 45.0%
GATAGAACGGTATGAAGTCG+CGG - chr3_3:73286134-73286153 Msa0471070:CDS 45.0%
ATAGAACGGTATGAAGTCGC+GGG - chr3_3:73286135-73286154 Msa0471070:CDS 45.0%
ATGGAGAGCTAGGATGACAA+TGG - chr3_3:73286161-73286180 Msa0471070:CDS 45.0%
!! AGGGTGCACTTCATTTTGGT+TGG - chr3_3:73286280-73286299 Msa0471070:CDS 45.0%
!!! GGGTGCACTTCATTTTGGTT+GGG - chr3_3:73286281-73286300 Msa0471070:CDS 45.0%
! TGATTGTTGCTTCAGCATGG+AGG - chr3_3:73286316-73286335 Msa0471070:CDS 45.0%
TTCATGCCAACAAGGCAACG+TGG - chr3_3:73284878-73284897 Msa0471070:CDS 50.0%
AATTGCAGCCTACATGGTGG+AGG - chr3_3:73285345-73285364 Msa0471070:CDS 50.0%
! ATTGCAGCCTACATGGTGGA+GGG - chr3_3:73285346-73285365 Msa0471070:CDS 50.0%
GTATCTGCATCGCTGCTAGA+CGG + chr3_3:73285447-73285466 None:intergenic 50.0%
AGCGATGCAGATACTGTTCG+AGG - chr3_3:73285453-73285472 Msa0471070:CDS 50.0%
AATTTCGAGCGGTCTCATCG+AGG - chr3_3:73285752-73285771 Msa0471070:CDS 50.0%
TCGATGCTTGATTGTCGTCG+TGG - chr3_3:73285793-73285812 Msa0471070:CDS 50.0%
ACGAGACCAACTTCTTCGCT+TGG - chr3_3:73285888-73285907 Msa0471070:CDS 50.0%
TACTCTTCCTAGAGAGAGCC+AGG - chr3_3:73286038-73286057 Msa0471070:CDS 50.0%
TTCCTAGAGAGAGCCAGGAT+AGG - chr3_3:73286043-73286062 Msa0471070:CDS 50.0%
! ATCCTATCCTGGCTCTCTCT+AGG + chr3_3:73286048-73286067 None:intergenic 50.0%
TTGAGAGGCAATGCTTGGCA+AGG - chr3_3:73286073-73286092 Msa0471070:CDS 50.0%
TGAGAGGCAATGCTTGGCAA+GGG - chr3_3:73286074-73286093 Msa0471070:CDS 50.0%
GGTATGAAGTCGCGGGAAAA+TGG - chr3_3:73286142-73286161 Msa0471070:CDS 50.0%
AGAGCTAGGATGACAATGGC+TGG - chr3_3:73286165-73286184 Msa0471070:CDS 50.0%
TTCATGCCAACAAGGCAACG+TGG - chr3_3:73284878-73284897 Msa0471070:CDS 50.0%
AATTGCAGCCTACATGGTGG+AGG - chr3_3:73285345-73285364 Msa0471070:CDS 50.0%
! ATTGCAGCCTACATGGTGGA+GGG - chr3_3:73285346-73285365 Msa0471070:CDS 50.0%
GTATCTGCATCGCTGCTAGA+CGG + chr3_3:73285447-73285466 None:intergenic 50.0%
AGCGATGCAGATACTGTTCG+AGG - chr3_3:73285453-73285472 Msa0471070:CDS 50.0%
AATTTCGAGCGGTCTCATCG+AGG - chr3_3:73285752-73285771 Msa0471070:CDS 50.0%
TCGATGCTTGATTGTCGTCG+TGG - chr3_3:73285793-73285812 Msa0471070:CDS 50.0%
ACGAGACCAACTTCTTCGCT+TGG - chr3_3:73285888-73285907 Msa0471070:CDS 50.0%
TACTCTTCCTAGAGAGAGCC+AGG - chr3_3:73286038-73286057 Msa0471070:CDS 50.0%
TTCCTAGAGAGAGCCAGGAT+AGG - chr3_3:73286043-73286062 Msa0471070:CDS 50.0%
! ATCCTATCCTGGCTCTCTCT+AGG + chr3_3:73286048-73286067 None:intergenic 50.0%
TTGAGAGGCAATGCTTGGCA+AGG - chr3_3:73286073-73286092 Msa0471070:CDS 50.0%
TGAGAGGCAATGCTTGGCAA+GGG - chr3_3:73286074-73286093 Msa0471070:CDS 50.0%
GGTATGAAGTCGCGGGAAAA+TGG - chr3_3:73286142-73286161 Msa0471070:CDS 50.0%
AGAGCTAGGATGACAATGGC+TGG - chr3_3:73286165-73286184 Msa0471070:CDS 50.0%
CTCGTAACTCTCGCTCGAGT+AGG + chr3_3:73284792-73284811 None:intergenic 55.0%
TCAGCACCACGTTGCCTTGT+TGG + chr3_3:73284887-73284906 None:intergenic 55.0%
TCGTCGTGGAGAAGCTCTTG+TGG - chr3_3:73285807-73285826 Msa0471070:CDS 55.0%
CGTCAGGCATGTGATGAAGC+TGG + chr3_3:73285846-73285865 None:intergenic 55.0%
!! GCCTGACGAGAGCGTTTCAA+CGG - chr3_3:73285858-73285877 Msa0471070:CDS 55.0%
ACCGTTGAAACGCTCTCGTC+AGG + chr3_3:73285862-73285881 None:intergenic 55.0%
CTGCAAAAACGGGGCGGTAT+TGG + chr3_3:73285965-73285984 None:intergenic 55.0%
TCGCGGGAAAATGGAGAGCT+AGG - chr3_3:73286151-73286170 Msa0471070:CDS 55.0%
CTCGTAACTCTCGCTCGAGT+AGG + chr3_3:73284792-73284811 None:intergenic 55.0%
TCAGCACCACGTTGCCTTGT+TGG + chr3_3:73284887-73284906 None:intergenic 55.0%
TCGTCGTGGAGAAGCTCTTG+TGG - chr3_3:73285807-73285826 Msa0471070:CDS 55.0%
CGTCAGGCATGTGATGAAGC+TGG + chr3_3:73285846-73285865 None:intergenic 55.0%
!! GCCTGACGAGAGCGTTTCAA+CGG - chr3_3:73285858-73285877 Msa0471070:CDS 55.0%
ACCGTTGAAACGCTCTCGTC+AGG + chr3_3:73285862-73285881 None:intergenic 55.0%
CTGCAAAAACGGGGCGGTAT+TGG + chr3_3:73285965-73285984 None:intergenic 55.0%
TCGCGGGAAAATGGAGAGCT+AGG - chr3_3:73286151-73286170 Msa0471070:CDS 55.0%
GCTAGACGGTCCGAAGAAGG+AGG + chr3_3:73285433-73285452 None:intergenic 60.0%
GCTGCTAGACGGTCCGAAGA+AGG + chr3_3:73285436-73285455 None:intergenic 60.0%
ACGGATCGCTGCACAGACTC+AGG + chr3_3:73285667-73285686 None:intergenic 60.0%
GAGTCTGTGCAGCGATCCGT+TGG - chr3_3:73285667-73285686 Msa0471070:CDS 60.0%
TCTGTGCAGCGATCCGTTGG+AGG - chr3_3:73285670-73285689 Msa0471070:CDS 60.0%
GCTAGACGGTCCGAAGAAGG+AGG + chr3_3:73285433-73285452 None:intergenic 60.0%
GCTGCTAGACGGTCCGAAGA+AGG + chr3_3:73285436-73285455 None:intergenic 60.0%
ACGGATCGCTGCACAGACTC+AGG + chr3_3:73285667-73285686 None:intergenic 60.0%
GAGTCTGTGCAGCGATCCGT+TGG - chr3_3:73285667-73285686 Msa0471070:CDS 60.0%
TCTGTGCAGCGATCCGTTGG+AGG - chr3_3:73285670-73285689 Msa0471070:CDS 60.0%
GGCGAGTCCCTCCACCATGT+AGG + chr3_3:73285356-73285375 None:intergenic 65.0%
TCCGGATTCAGCGAGGCGAG+CGG + chr3_3:73285377-73285396 None:intergenic 65.0%
GGCGAGTCCCTCCACCATGT+AGG + chr3_3:73285356-73285375 None:intergenic 65.0%
TCCGGATTCAGCGAGGCGAG+CGG + chr3_3:73285377-73285396 None:intergenic 65.0%
GCCGCTCGCCTCGCTGAATC+CGG - chr3_3:73285373-73285392 Msa0471070:CDS 70.0%
GCCGCTCGCCTCGCTGAATC+CGG - chr3_3:73285373-73285392 Msa0471070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73284644 73286341 73284644 ID=Msa0471070;Name=Msa0471070
chr3_3 mRNA 73284644 73286341 73284644 ID=Msa0471070-mRNA-1;Parent=Msa0471070;Name=Msa0471070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|565
chr3_3 exon 73284644 73286341 73284644 ID=Msa0471070-mRNA-1:exon:18541;Parent=Msa0471070-mRNA-1
chr3_3 CDS 73284644 73286341 73284644 ID=Msa0471070-mRNA-1:cds;Parent=Msa0471070-mRNA-1
Gene Sequence

>Msa0471070

ATGTCATTAATTGGATCTTCTGAGCTAGCTCCACCATCACATAAAAGCACTAAGCTCAAATCGCCAAAGGAAATCGATGTTAACCCTGATTTTTCCTCCCAAATTTCTTATTCTCATAAGCATAGAAGCATGTATATCACAGATACCTACTCGAGCGAGAGTTACGAGAAGTACTTCAATGACTCACAGACAGAAGAACTAATAGAACCATCTAGTTCTGACATCTCTACAAGTTTCATGCCAACAAGGCAACGTGGTGCTGATCAGTCCAATTTCGGATCAGATTTGGTGATGGGAAATCGAAGCGTGAATTCAATTGAAGTTGATGGTGCAATGAGATCAAAACTAGAAGCATTGGAGAGGGCATTACTTGATGATAGTGACATTGAGGAAGAAGAGGAATATGGTAATTCTCAAAGCATGGAAATTGATCCTAACATTATTGATTGGGCTGATCCTGATCCAATTCAGAATATGCTGCTGTTCCATGATCATGACTCACCAAAGGAGTATTCGTCTCCAGATTCCAATATTAGCAGCATCAGTAGCACCACCAAAGAAATAACGAAAATTTCTAGGACCCCCAAGCAACTTCTTTATGAATGTGCTACTGCAATTTCAGAAGGAAATGAAGAGGAAGCATCGTCAATGATAAACAATCTCCGACGAATTGTCTCAATTCAAGGAGAGCCTTCCCAAAGAATTGCAGCCTACATGGTGGAGGGACTCGCCGCTCGCCTCGCTGAATCCGGAAAAAGTATTTATAGAGCTTTGAAATGCAAGGAACCTCCTTCTTCGGACCGTCTAGCAGCGATGCAGATACTGTTCGAGGTTTGTCCGTGTTTTAAATTCGGGTTTATTGCAGCTAACTATGCAATAACAGAAGCGGTTAAAGATGAAATGAAGATTCATATAATAGATTTTGATATCAATCAAGGAAGTCAGTACATAACCCTGATTCAAACACTTGCTTCGAGGTCTTGTAAGCCATCACATGTTAGATTGACCGGGATTGATGATCCTGAGTCTGTGCAGCGATCCGTTGGAGGACTAAAGATCATAGGACAAAGACTTGAACAACTAGCAGAAACACTTGGTTTGTCATTTGAATTTCGAGCGGTCTCATCGAGGACTTCAATTGTCACCTCATCGATGCTTGATTGTCGTCGTGGAGAAGCTCTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCCTGACGAGAGCGTTTCAACGGTGAACGAACGAGACCAACTTCTTCGCTTGGTAAAGAGTTTGAATCCAAAACTTGTAACGGTCGTGGAGCAAGATGTAAACACCAATACCGCCCCGTTTTTGCAGAGATTTGTTGAAGCTTACAATTACTACTCTGCTGTGTTTGAGTCACTTGATGTTACTCTTCCTAGAGAGAGCCAGGATAGGATGAATGTTGAGAGGCAATGCTTGGCAAGGGATATTGTTAATACGGTTGCATGTGAAGGTGAAGATAGGATAGAACGGTATGAAGTCGCGGGAAAATGGAGAGCTAGGATGACAATGGCTGGATTCAGTTCATCACCAATGAGCACAAATGTGAGTGATGAAATCCGAAAACAAGTTAAGTTGTACTGTGATAGGTACAAGATAAAGGAGGAAAAGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAGGTGA
Protein sequence

>Msa0471070

MSLIGSSELAPPSHKSTKLKSPKEIDVNPDFSSQISYSHKHRSMYITDTYSSESYEKYFNDSQTEELIEPSSSDISTSFMPTRQRGADQSNFGSDLVMGNRSVNSIEVDGAMRSKLEALERALLDDSDIEEEEEYGNSQSMEIDPNIIDWADPDPIQNMLLFHDHDSPKEYSSPDSNISSISSTTKEITKISRTPKQLLYECATAISEGNEEEASSMINNLRRIVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANYAITEAVKDEMKIHIIDFDINQGSQYITLIQTLASRSCKPSHVRLTGIDDPESVQRSVGGLKIIGQRLEQLAETLGLSFEFRAVSSRTSIVTSSMLDCRRGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFSSSPMSTNVSDEIRKQVKLYCDRYKIKEEKGALHFGWEDKNLIVASAWR*