Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379480 | XP_013450758.3 | 74.308 | 253 | 43 | 5 | 4 | 244 | 103 | 345 | 1.68e-123 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379480 | sp|Q6BPT6|AIM32_DEBHA | 41.237 | 97 | 53 | 2 | 69 | 165 | 173 | 265 | 5.52e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379480 | A0A396HEH8 | 74.308 | 253 | 43 | 5 | 4 | 244 | 103 | 345 | 8.03e-124 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0744710 | Msa1379480 | 0.817713 | 2.858990e-52 | -8.615850e-47 |
| Msa0826240 | Msa1379480 | 0.815507 | 8.922848e-52 | -8.615850e-47 |
| Msa0320170 | Msa1379480 | 0.811904 | 5.544562e-51 | -8.615850e-47 |
| Msa1174280 | Msa1379480 | 0.806672 | 7.341489e-50 | -8.615850e-47 |
| Msa0565180 | Msa1379480 | 0.800773 | 1.231222e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379480 | MtrunA17_Chr6g0449451 | 74.308 | 253 | 43 | 5 | 4 | 244 | 103 | 345 | 1.55e-127 | 366 |
| Msa1379480 | MtrunA17_Chr7g0227301 | 67.949 | 234 | 55 | 3 | 3 | 222 | 65 | 292 | 7.55e-112 | 325 |
| Msa1379480 | MtrunA17_Chr6g0449431 | 66.162 | 198 | 49 | 3 | 24 | 221 | 3 | 182 | 5.67e-84 | 252 |
| Msa1379480 | MtrunA17_Chr5g0446741 | 46.154 | 234 | 109 | 5 | 12 | 235 | 127 | 353 | 4.07e-64 | 206 |
| Msa1379480 | MtrunA17_Chr3g0078811 | 50.877 | 171 | 83 | 1 | 12 | 181 | 127 | 297 | 8.41e-60 | 191 |
| Msa1379480 | MtrunA17_Chr6g0449421 | 90.000 | 50 | 3 | 1 | 40 | 89 | 51 | 98 | 2.58e-24 | 94.4 |
| Msa1379480 | MtrunA17_Chr6g0449411 | 90.244 | 41 | 4 | 0 | 88 | 128 | 23 | 63 | 3.23e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379480 | AT5G40510.1 | 50.000 | 254 | 104 | 5 | 4 | 254 | 71 | 304 | 3.81e-81 | 247 |
| Msa1379480 | AT5G40510.2 | 50.000 | 254 | 104 | 5 | 4 | 254 | 107 | 340 | 1.74e-80 | 246 |
| Msa1379480 | AT3G27570.2 | 52.766 | 235 | 95 | 4 | 4 | 231 | 73 | 298 | 2.35e-79 | 243 |
| Msa1379480 | AT3G27570.1 | 52.766 | 235 | 95 | 4 | 4 | 231 | 112 | 337 | 7.16e-79 | 243 |
| Msa1379480 | AT4G26620.1 | 42.358 | 229 | 125 | 2 | 3 | 230 | 118 | 340 | 9.87e-60 | 195 |
| Msa1379480 | AT5G55900.2 | 43.396 | 212 | 106 | 3 | 10 | 215 | 9 | 212 | 3.31e-56 | 182 |
| Msa1379480 | AT5G55900.1 | 42.661 | 218 | 111 | 3 | 3 | 214 | 106 | 315 | 3.11e-55 | 183 |
Find 55 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTGTATTTGATCATTTC+TGG | 0.115811 | tig0020279:+123795 | None:intergenic |
| AATGAAGAAATTCAGCTTAG+AGG | 0.270475 | tig0020279:-122951 | Msa1379480:CDS |
| CCTTGCTTACATTGCTCTCT+TGG | 0.278877 | tig0020279:+122095 | None:intergenic |
| GAAAGATCAGATTTCTGTTA+TGG | 0.295318 | tig0020279:-122925 | Msa1379480:CDS |
| GTTATGGCTTGTTCTCATAT+TGG | 0.310524 | tig0020279:-122909 | Msa1379480:CDS |
| TCTTTCCATTACCAAGCTTC+TGG | 0.316686 | tig0020279:+122239 | None:intergenic |
| TCTCCCTTAACTTCAGCAAT+AGG | 0.342537 | tig0020279:+122268 | None:intergenic |
| GGTTGTTGCCAAGGTGTTGA+TGG | 0.346032 | tig0020279:-122181 | Msa1379480:CDS |
| GAATTGTTTCAAAGGTCAAA+TGG | 0.373767 | tig0020279:-122296 | Msa1379480:CDS |
| GCCACCTATTGCTGAAGTTA+AGG | 0.375556 | tig0020279:-122272 | Msa1379480:CDS |
| ACCTGTATTTGATCATTTCT+GGG | 0.389616 | tig0020279:+123796 | None:intergenic |
| AATTGTTTCAAAGGTCAAAT+GGG | 0.399753 | tig0020279:-122295 | Msa1379480:CDS |
| AGTAAGGCAGGCACATCATT+AGG | 0.407951 | tig0020279:+122515 | None:intergenic |
| GTTGTTGCCAAGGTGTTGAT+GGG | 0.422367 | tig0020279:-122180 | Msa1379480:CDS |
| TTGATTGAAAAGGGGTTTGA+AGG | 0.422542 | tig0020279:-123135 | Msa1379480:intron |
| AGTAACAATGAAAACGTTGT+TGG | 0.435959 | tig0020279:-122202 | Msa1379480:CDS |
| GGCAATGTGTTGGTCTAGTA+AGG | 0.444132 | tig0020279:+122499 | None:intergenic |
| TCCCAGAAATGATCAAATAC+AGG | 0.447003 | tig0020279:-123797 | Msa1379480:intron |
| TTGAGCTTGTCAATGAGAAC+AGG | 0.452415 | tig0020279:+122972 | None:intergenic |
| CCACCTATTGCTGAAGTTAA+GGG | 0.453799 | tig0020279:-122271 | Msa1379480:CDS |
| AATGACCAGAAGCTTGGTAA+TGG | 0.477763 | tig0020279:-122244 | Msa1379480:CDS |
| AATTGTATGAATTGTTTCAA+AGG | 0.495078 | tig0020279:-122304 | Msa1379480:CDS |
| TAGTTTCTTCAATGATGTAA+TGG | 0.500573 | tig0020279:-123099 | Msa1379480:CDS |
| ATGTGAGGTGTGGTGTTTGT+GGG | 0.503024 | tig0020279:-122995 | Msa1379480:CDS |
| AACGTTGTTGGTTGTTGCCA+AGG | 0.511391 | tig0020279:-122190 | Msa1379480:CDS |
| AATTTAATCACATTTAGTCC+TGG | 0.524943 | tig0020279:-122867 | Msa1379480:CDS |
| GGAGAAAATGACCAGAAGCT+TGG | 0.526588 | tig0020279:-122250 | Msa1379480:CDS |
| ATGGCTTGTTCTCATATTGG+TGG | 0.527123 | tig0020279:-122906 | Msa1379480:CDS |
| ATGTGTTGGTCTAGTAAGGC+AGG | 0.531040 | tig0020279:+122503 | None:intergenic |
| ATTGGTGGTCATAAGTATGC+TGG | 0.540034 | tig0020279:-122891 | Msa1379480:CDS |
| CCAAGAGAGCAATGTAAGCA+AGG | 0.548987 | tig0020279:-122095 | Msa1379480:CDS |
| GATGTGAGGTGTGGTGTTTG+TGG | 0.555006 | tig0020279:-122996 | Msa1379480:CDS |
| CCTCTCCCTTGGCAATGTGT+TGG | 0.560206 | tig0020279:+122489 | None:intergenic |
| ACATTTAGTCCTGGACCAGA+TGG | 0.561723 | tig0020279:-122858 | Msa1379480:CDS |
| CAAGAGAGCAATGTAAGCAA+GGG | 0.568548 | tig0020279:-122094 | Msa1379480:CDS |
| GAAAATTAAGACGTCGCCGT+CGG | 0.574111 | tig0020279:+123818 | None:intergenic |
| GAAGAGGACGGCTTCTCCGA+CGG | 0.576918 | tig0020279:-123834 | Msa1379480:CDS |
| CCCTTAACTTCAGCAATAGG+TGG | 0.579323 | tig0020279:+122271 | None:intergenic |
| TCTTGCACTCCACCATCCCA+TGG | 0.587486 | tig0020279:+123065 | None:intergenic |
| TGTGAGACGATTGAAGAGGA+CGG | 0.605377 | tig0020279:-123846 | Msa1379480:CDS |
| AAGAAACCCCATCAACACCT+TGG | 0.609631 | tig0020279:+122173 | None:intergenic |
| AGTTTGTGAGACGATTGAAG+AGG | 0.628975 | tig0020279:-123850 | Msa1379480:CDS |
| GGAGTGCAAGATGTGATAGC+AGG | 0.631484 | tig0020279:-123053 | Msa1379480:CDS |
| CCAACACATTGCCAAGGGAG+AGG | 0.633790 | tig0020279:-122489 | Msa1379480:intron |
| ACTAGACCAACACATTGCCA+AGG | 0.634640 | tig0020279:-122495 | Msa1379480:CDS |
| AGTTGTAAACCATGGGATGG+TGG | 0.642180 | tig0020279:-123074 | Msa1379480:CDS |
| TTGTTGCCAAGGTGTTGATG+GGG | 0.644778 | tig0020279:-122179 | Msa1379480:CDS |
| AAGAGAGCAATGTAAGCAAG+GGG | 0.652868 | tig0020279:-122093 | Msa1379480:CDS |
| CTCATGGAAGTCGTGATGTG+AGG | 0.654552 | tig0020279:-123010 | Msa1379480:CDS |
| ATTGTTTCAAAGGTCAAATG+GGG | 0.654852 | tig0020279:-122294 | Msa1379480:CDS |
| AATGGTGAGTTGTAAACCAT+GGG | 0.656762 | tig0020279:-123081 | Msa1379480:CDS |
| CTAGACCAACACATTGCCAA+GGG | 0.659473 | tig0020279:-122494 | Msa1379480:CDS |
| TAATGGTGAGTTGTAAACCA+TGG | 0.677466 | tig0020279:-123082 | Msa1379480:CDS |
| GTGAGTTGTAAACCATGGGA+TGG | 0.686051 | tig0020279:-123077 | Msa1379480:CDS |
| GGAAGTCGTGATGTGAGGTG+TGG | 0.692889 | tig0020279:-123005 | Msa1379480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAATTAATAACTTGT+TGG | + | tig0020279:122145-122164 | None:intergenic | 10.0% |
| !! | TTAATCCTAAAAAAAAAAAA+TGG | + | tig0020279:122993-123012 | None:intergenic | 10.0% |
| !! | ATTCAATATAATATATAAGA+TGG | + | tig0020279:124351-124370 | None:intergenic | 10.0% |
| !! | ATCTTATATATTATATTGAA+TGG | - | tig0020279:124350-124369 | Msa1379480:intron | 10.0% |
| !! | TTAACGACATTATTTATTTA+TGG | + | tig0020279:122172-122191 | None:intergenic | 15.0% |
| !! | AAATTGGATACAAATTAATA+TGG | + | tig0020279:122768-122787 | None:intergenic | 15.0% |
| !!! | ATTTAAGATAACATCAAAAT+TGG | + | tig0020279:122784-122803 | None:intergenic | 15.0% |
| !!! | TGTTATCTTAAATTTCATTT+TGG | - | tig0020279:122791-122810 | Msa1379480:intron | 15.0% |
| !! | AAACATTTCTTACTTAATAA+TGG | + | tig0020279:122962-122981 | None:intergenic | 15.0% |
| !!! | AAACACCATTTTTTTTTTTT+AGG | - | tig0020279:122985-123004 | Msa1379480:CDS | 15.0% |
| !! | AATAATCAATTCTCTTATTA+TGG | - | tig0020279:123190-123209 | Msa1379480:intron | 15.0% |
| !!! | TTAATGTTTTATATTGTGAA+TGG | - | tig0020279:123524-123543 | Msa1379480:intron | 15.0% |
| !! | AGTAAAAAATTTGGAAAAAA+AGG | - | tig0020279:123987-124006 | Msa1379480:intron | 15.0% |
| !!! | TTAAAAGATTTTATTGTTGT+TGG | - | tig0020279:124116-124135 | Msa1379480:intron | 15.0% |
| !!! | ACTTAAGTCTTTAAAAATGT+TGG | + | tig0020279:122553-122572 | None:intergenic | 20.0% |
| !! | AGAAAGAATTAATATACAAG+TGG | + | tig0020279:123064-123083 | None:intergenic | 20.0% |
| !! | TTCTATCAAGATATATGATA+AGG | - | tig0020279:123284-123303 | Msa1379480:intron | 20.0% |
| !!! | TTTGAAAGTAATGTTTGTTA+AGG | - | tig0020279:123318-123337 | Msa1379480:intron | 20.0% |
| !!! | GACATTAGAATTTGTTTATT+TGG | - | tig0020279:124325-124344 | Msa1379480:intron | 20.0% |
| !! | AATTGTATGAATTGTTTCAA+AGG | - | tig0020279:124401-124420 | Msa1379480:intron | 20.0% |
| !!! | AATTTTTATCCAAAAGCATG+TGG | - | tig0020279:122704-122723 | Msa1379480:intron | 25.0% |
| !!! | TGTTGTTGTTTGATTGAAAA+GGG | - | tig0020279:123561-123580 | Msa1379480:intron | 25.0% |
| ! | TAGTTTCTTCAATGATGTAA+TGG | - | tig0020279:123606-123625 | Msa1379480:intron | 25.0% |
| ! | AATTTAATCACATTTAGTCC+TGG | - | tig0020279:123838-123857 | Msa1379480:CDS | 25.0% |
| ! | CATTGTTCAAAACAAATAAG+AGG | + | tig0020279:123918-123937 | None:intergenic | 25.0% |
| ! | GTTGATGCTAGTAAAAAATT+TGG | - | tig0020279:123978-123997 | Msa1379480:intron | 25.0% |
| ! | CATACCTGTAATTCAATATT+AGG | + | tig0020279:124159-124178 | None:intergenic | 25.0% |
| ! | CTAATATTGAATTACAGGTA+TGG | - | tig0020279:124157-124176 | Msa1379480:intron | 25.0% |
| ! | CAACTAATAAAATATCCATG+TGG | + | tig0020279:124289-124308 | None:intergenic | 25.0% |
| ! | AATTGTTTCAAAGGTCAAAT+GGG | - | tig0020279:124410-124429 | Msa1379480:intron | 25.0% |
| !!! | AAGTTTTGAGCAAAATAAAG+TGG | - | tig0020279:124568-124587 | Msa1379480:intron | 25.0% |
| ! | GTTTTTGAACTTGAAATGAG+AGG | + | tig0020279:122213-122232 | None:intergenic | 30.0% |
| TTTGCTTGTACATCTCATAA+CGG | + | tig0020279:122313-122332 | None:intergenic | 30.0% | |
| AATTAATATGGTCGACCTAA+AGG | + | tig0020279:122756-122775 | None:intergenic | 30.0% | |
| TGGATTTACGATTGTTAGTT+TGG | - | tig0020279:122811-122830 | Msa1379480:intron | 30.0% | |
| ACCTGTATTTGATCATTTCT+GGG | + | tig0020279:122912-122931 | None:intergenic | 30.0% | |
| TACCTGTATTTGATCATTTC+TGG | + | tig0020279:122913-122932 | None:intergenic | 30.0% | |
| GAAATCGTAAAAAATGTGCT+AGG | + | tig0020279:123042-123061 | None:intergenic | 30.0% | |
| TAATTCTTTCTTTCTCTCCT+TGG | - | tig0020279:123073-123092 | Msa1379480:CDS | 30.0% | |
| ! | TTTCGTGTTTTCATATTCCA+AGG | + | tig0020279:123093-123112 | None:intergenic | 30.0% |
| !! | GTGTTGTTGTTTGATTGAAA+AGG | - | tig0020279:123560-123579 | Msa1379480:intron | 30.0% |
| !! | GTTGTTGTTTGATTGAAAAG+GGG | - | tig0020279:123562-123581 | Msa1379480:intron | 30.0% |
| !! | TATATTTTTGTGTGTGCTCA+TGG | - | tig0020279:123679-123698 | Msa1379480:intron | 30.0% |
| AATGAAGAAATTCAGCTTAG+AGG | - | tig0020279:123754-123773 | Msa1379480:intron | 30.0% | |
| GAAAGATCAGATTTCTGTTA+TGG | - | tig0020279:123780-123799 | Msa1379480:intron | 30.0% | |
| ! | TTACATGTGTCGATATTATG+TGG | - | tig0020279:124025-124044 | Msa1379480:intron | 30.0% |
| GAATTGTTTCAAAGGTCAAA+TGG | - | tig0020279:124409-124428 | Msa1379480:intron | 30.0% | |
| ATTGTTTCAAAGGTCAAATG+GGG | - | tig0020279:124411-124430 | Msa1379480:intron | 30.0% | |
| AGTAACAATGAAAACGTTGT+TGG | - | tig0020279:124503-124522 | Msa1379480:intron | 30.0% | |
| TTGCTTGTACATCTCATAAC+GGG | + | tig0020279:122312-122331 | None:intergenic | 35.0% | |
| !!! | ATTTTTGCGAGCTTTGAAAG+CGG | + | tig0020279:122456-122475 | None:intergenic | 35.0% |
| CAAAAATGACATCGTCATCA+AGG | - | tig0020279:122469-122488 | Msa1379480:intron | 35.0% | |
| CAAGATGTGAACTTGCATTA+GGG | - | tig0020279:122583-122602 | Msa1379480:intron | 35.0% | |
| ! | AAACCCTAACATGTGTTGAT+TGG | - | tig0020279:122730-122749 | Msa1379480:intron | 35.0% |
| TCCCAGAAATGATCAAATAC+AGG | - | tig0020279:122908-122927 | Msa1379480:CDS | 35.0% | |
| ATTATGGTTCTCTCTCTAAC+TGG | - | tig0020279:123206-123225 | Msa1379480:intron | 35.0% | |
| TTGATTGAAAAGGGGTTTGA+AGG | - | tig0020279:123570-123589 | Msa1379480:intron | 35.0% | |
| TAATGGTGAGTTGTAAACCA+TGG | - | tig0020279:123623-123642 | Msa1379480:intron | 35.0% | |
| AATGGTGAGTTGTAAACCAT+GGG | - | tig0020279:123624-123643 | Msa1379480:intron | 35.0% | |
| !! | GTTATGGCTTGTTCTCATAT+TGG | - | tig0020279:123796-123815 | Msa1379480:intron | 35.0% |
| ATGGAAAAATCATGGGTCAT+TGG | - | tig0020279:123866-123885 | Msa1379480:intron | 35.0% | |
| GTCTGATGTTCGATATGTAT+CGG | + | tig0020279:124060-124079 | None:intergenic | 35.0% | |
| CGTGCCTAATATTGAATTAC+AGG | - | tig0020279:124152-124171 | Msa1379480:intron | 35.0% | |
| GAGAGGTCATACAAAAACTA+TGG | - | tig0020279:124233-124252 | Msa1379480:intron | 35.0% | |
| AGGTCATACAAAAACTATGG+AGG | - | tig0020279:124236-124255 | Msa1379480:intron | 35.0% | |
| ! | AGTCAAAAGCACACATTAAG+TGG | + | tig0020279:124265-124284 | None:intergenic | 35.0% |
| TTTGGAAGAAGACATGGTTG+CGG | + | tig0020279:122261-122280 | None:intergenic | 40.0% | |
| ! | ATAACGGGAGAAACCGTATT+TGG | + | tig0020279:122297-122316 | None:intergenic | 40.0% |
| ATGTACAAGCAAAACCTTGC+TGG | - | tig0020279:122320-122339 | Msa1379480:CDS | 40.0% | |
| ATGACGATCGTAGGATTCAA+CGG | + | tig0020279:122348-122367 | None:intergenic | 40.0% | |
| TAGAAAGACATGACGATCGT+AGG | + | tig0020279:122357-122376 | None:intergenic | 40.0% | |
| GTTACAAGAACCACCAAACT+TGG | - | tig0020279:122378-122397 | Msa1379480:intron | 40.0% | |
| TTTAGGAAGGGGATGATCAT+CGG | + | tig0020279:122423-122442 | None:intergenic | 40.0% | |
| !! | GTTGCAACACTTTTAGGAAG+GGG | + | tig0020279:122434-122453 | None:intergenic | 40.0% |
| !! | GGTTGCAACACTTTTAGGAA+GGG | + | tig0020279:122435-122454 | None:intergenic | 40.0% |
| ! | AAAGCGGTTGCAACACTTTT+AGG | + | tig0020279:122440-122459 | None:intergenic | 40.0% |
| TTGTAGAGTCGGTGCAAATT+AGG | + | tig0020279:122524-122543 | None:intergenic | 40.0% | |
| CCTAATGCAAGTTCACATCT+TGG | + | tig0020279:122585-122604 | None:intergenic | 40.0% | |
| CCAAGATGTGAACTTGCATT+AGG | - | tig0020279:122582-122601 | Msa1379480:intron | 40.0% | |
| AGGCCAATCAACACATGTTA+GGG | + | tig0020279:122736-122755 | None:intergenic | 40.0% | |
| AAGGCCAATCAACACATGTT+AGG | + | tig0020279:122737-122756 | None:intergenic | 40.0% | |
| !! | ACATGTGTTGATTGGCCTTT+AGG | - | tig0020279:122738-122757 | Msa1379480:intron | 40.0% |
| AGTTTGTGAGACGATTGAAG+AGG | - | tig0020279:122855-122874 | Msa1379480:CDS | 40.0% | |
| TTGAGCTTGTCAATGAGAAC+AGG | + | tig0020279:123736-123755 | None:intergenic | 40.0% | |
| !! | ATGGCTTGTTCTCATATTGG+TGG | - | tig0020279:123799-123818 | Msa1379480:CDS | 40.0% |
| ! | ATTGGTGGTCATAAGTATGC+TGG | - | tig0020279:123814-123833 | Msa1379480:CDS | 40.0% |
| ! | ATGATTTTTCCATCTGGTCC+AGG | + | tig0020279:123859-123878 | None:intergenic | 40.0% |
| TGGACCAGATGGAAAAATCA+TGG | - | tig0020279:123858-123877 | Msa1379480:CDS | 40.0% | |
| GGACCAGATGGAAAAATCAT+GGG | - | tig0020279:123859-123878 | Msa1379480:CDS | 40.0% | |
| ! | TGACCCATGATTTTTCCATC+TGG | + | tig0020279:123865-123884 | None:intergenic | 40.0% |
| CAATGAAACACTCACGAACA+CGG | - | tig0020279:123933-123952 | Msa1379480:intron | 40.0% | |
| ! | ACGTCTTTCATCAGAAGTGT+TGG | - | tig0020279:124080-124099 | Msa1379480:intron | 40.0% |
| ! | TTTTTGTATGACCTCTCCCT+TGG | + | tig0020279:124230-124249 | None:intergenic | 40.0% |
| CCACCTATTGCTGAAGTTAA+GGG | - | tig0020279:124434-124453 | Msa1379480:intron | 40.0% | |
| TCTCCCTTAACTTCAGCAAT+AGG | + | tig0020279:124440-124459 | None:intergenic | 40.0% | |
| AATGACCAGAAGCTTGGTAA+TGG | - | tig0020279:124461-124480 | Msa1379480:intron | 40.0% | |
| TCTTTCCATTACCAAGCTTC+TGG | + | tig0020279:124469-124488 | None:intergenic | 40.0% | |
| CAAGAGAGCAATGTAAGCAA+GGG | - | tig0020279:124611-124630 | Msa1379480:intron | 40.0% | |
| AAGAGAGCAATGTAAGCAAG+GGG | - | tig0020279:124612-124631 | Msa1379480:intron | 40.0% | |
| ATGTAAGCAAGGGGAAAAAG+TGG | - | tig0020279:124621-124640 | Msa1379480:intron | 40.0% | |
| ! | GACGACTTTGGAAGAAGACA+TGG | + | tig0020279:122267-122286 | None:intergenic | 45.0% |
| !! | CGGTTGCAACACTTTTAGGA+AGG | + | tig0020279:122436-122455 | None:intergenic | 45.0% |
| !! | TTTGCACCGACTCTACAAGT+CGG | - | tig0020279:122526-122545 | Msa1379480:CDS | 45.0% |
| GATGTGAACTTGCATTAGGG+AGG | - | tig0020279:122586-122605 | Msa1379480:intron | 45.0% | |
| CTTGCATTAGGGAGGATTTG+AGG | - | tig0020279:122594-122613 | Msa1379480:intron | 45.0% | |
| ! | GGGTTTAAGCCACATGCTTT+TGG | + | tig0020279:122716-122735 | None:intergenic | 45.0% |
| TGTGAGACGATTGAAGAGGA+CGG | - | tig0020279:122859-122878 | Msa1379480:CDS | 45.0% | |
| GAAAATTAAGACGTCGCCGT+CGG | + | tig0020279:122890-122909 | None:intergenic | 45.0% | |
| GTGAGTTGTAAACCATGGGA+TGG | - | tig0020279:123628-123647 | Msa1379480:intron | 45.0% | |
| AGTTGTAAACCATGGGATGG+TGG | - | tig0020279:123631-123650 | Msa1379480:intron | 45.0% | |
| ATGTGAGGTGTGGTGTTTGT+GGG | - | tig0020279:123710-123729 | Msa1379480:intron | 45.0% | |
| ACATTTAGTCCTGGACCAGA+TGG | - | tig0020279:123847-123866 | Msa1379480:CDS | 45.0% | |
| AGTAAGGCAGGCACATCATT+AGG | + | tig0020279:124193-124212 | None:intergenic | 45.0% | |
| ! | ATGTGTTGGTCTAGTAAGGC+AGG | + | tig0020279:124205-124224 | None:intergenic | 45.0% |
| ! | GGCAATGTGTTGGTCTAGTA+AGG | + | tig0020279:124209-124228 | None:intergenic | 45.0% |
| ACTAGACCAACACATTGCCA+AGG | - | tig0020279:124210-124229 | Msa1379480:intron | 45.0% | |
| CTAGACCAACACATTGCCAA+GGG | - | tig0020279:124211-124230 | Msa1379480:intron | 45.0% | |
| !!! | GTGTGCTTTTGACTTCCACA+TGG | - | tig0020279:124271-124290 | Msa1379480:intron | 45.0% |
| GCCACCTATTGCTGAAGTTA+AGG | - | tig0020279:124433-124452 | Msa1379480:intron | 45.0% | |
| CCCTTAACTTCAGCAATAGG+TGG | + | tig0020279:124437-124456 | None:intergenic | 45.0% | |
| GGAGAAAATGACCAGAAGCT+TGG | - | tig0020279:124455-124474 | Msa1379480:intron | 45.0% | |
| ! | AACGTTGTTGGTTGTTGCCA+AGG | - | tig0020279:124515-124534 | Msa1379480:intron | 45.0% |
| !! | GTTGTTGCCAAGGTGTTGAT+GGG | - | tig0020279:124525-124544 | Msa1379480:intron | 45.0% |
| !! | TTGTTGCCAAGGTGTTGATG+GGG | - | tig0020279:124526-124545 | Msa1379480:intron | 45.0% |
| AAGAAACCCCATCAACACCT+TGG | + | tig0020279:124535-124554 | None:intergenic | 45.0% | |
| CCTTGCTTACATTGCTCTCT+TGG | + | tig0020279:124613-124632 | None:intergenic | 45.0% | |
| CCAAGAGAGCAATGTAAGCA+AGG | - | tig0020279:124610-124629 | Msa1379480:intron | 45.0% | |
| AAGACATGGTTGCGGAGGAA+TGG | + | tig0020279:122253-122272 | None:intergenic | 50.0% | |
| !! | TTTGGCGGTGTTGACGACTT+TGG | + | tig0020279:122279-122298 | None:intergenic | 50.0% |
| GTCGTCAACACCGCCAAATA+CGG | - | tig0020279:122281-122300 | Msa1379480:CDS | 50.0% | |
| ACGGGAGAAACCGTATTTGG+CGG | + | tig0020279:122294-122313 | None:intergenic | 50.0% | |
| AGGATTCAACGGTTCCAGCA+AGG | + | tig0020279:122337-122356 | None:intergenic | 50.0% | |
| !! | GTTGGACCGACTTGTAGAGT+CGG | + | tig0020279:122535-122554 | None:intergenic | 50.0% |
| GGAGTGCAAGATGTGATAGC+AGG | - | tig0020279:123652-123671 | Msa1379480:intron | 50.0% | |
| CTCATGGAAGTCGTGATGTG+AGG | - | tig0020279:123695-123714 | Msa1379480:intron | 50.0% | |
| GATGTGAGGTGTGGTGTTTG+TGG | - | tig0020279:123709-123728 | Msa1379480:intron | 50.0% | |
| !! | CAGAAGTGTTGGTGTTGCAG+AGG | - | tig0020279:124091-124110 | Msa1379480:intron | 50.0% |
| !! | GGTTGTTGCCAAGGTGTTGA+TGG | - | tig0020279:124524-124543 | Msa1379480:intron | 50.0% |
| TGACTGTGAGCTCGAGCATG+AGG | - | tig0020279:122091-122110 | Msa1379480:CDS | 55.0% | |
| GACTGTGAGCTCGAGCATGA+GGG | - | tig0020279:122092-122111 | Msa1379480:CDS | 55.0% | |
| GGAAGAAGACATGGTTGCGG+AGG | + | tig0020279:122258-122277 | None:intergenic | 55.0% | |
| TCATCGGAGGCTTCAACACG+CGG | + | tig0020279:122407-122426 | None:intergenic | 55.0% | |
| AGGAAGGGGATGATCATCGG+AGG | + | tig0020279:122420-122439 | None:intergenic | 55.0% | |
| TCTTGCACTCCACCATCCCA+TGG | + | tig0020279:123643-123662 | None:intergenic | 55.0% | |
| GGAAGTCGTGATGTGAGGTG+TGG | - | tig0020279:123700-123719 | Msa1379480:intron | 55.0% | |
| CCTCTCCCTTGGCAATGTGT+TGG | + | tig0020279:124219-124238 | None:intergenic | 55.0% | |
| CCAACACATTGCCAAGGGAG+AGG | - | tig0020279:124216-124235 | Msa1379480:intron | 55.0% | |
| CAACACGCGGAGGCCAAGTT+TGG | + | tig0020279:122394-122413 | None:intergenic | 60.0% | |
| GAAGAGGACGGCTTCTCCGA+CGG | - | tig0020279:122871-122890 | Msa1379480:CDS | 60.0% | |
| CACGCGGAGGCCAAGTTTGG+TGG | + | tig0020279:122391-122410 | None:intergenic | 65.0% | |
| TCGGAGGCTTCAACACGCGG+AGG | + | tig0020279:122404-122423 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020279 | gene | 122063 | 124664 | 122063 | ID=Msa1379480;Name=Msa1379480 |
| tig0020279 | mRNA | 122063 | 124664 | 122063 | ID=Msa1379480-mRNA-1;Parent=Msa1379480;Name=Msa1379480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.8|1|1|5|0|256 |
| tig0020279 | exon | 124632 | 124664 | 124632 | ID=Msa1379480-mRNA-1:exon:6612;Parent=Msa1379480-mRNA-1 |
| tig0020279 | exon | 123798 | 123883 | 123798 | ID=Msa1379480-mRNA-1:exon:6611;Parent=Msa1379480-mRNA-1 |
| tig0020279 | exon | 122840 | 123145 | 122840 | ID=Msa1379480-mRNA-1:exon:6610;Parent=Msa1379480-mRNA-1 |
| tig0020279 | exon | 122490 | 122553 | 122490 | ID=Msa1379480-mRNA-1:exon:6609;Parent=Msa1379480-mRNA-1 |
| tig0020279 | exon | 122063 | 122344 | 122063 | ID=Msa1379480-mRNA-1:exon:6608;Parent=Msa1379480-mRNA-1 |
| tig0020279 | CDS | 124632 | 124664 | 124632 | ID=Msa1379480-mRNA-1:cds;Parent=Msa1379480-mRNA-1 |
| tig0020279 | CDS | 123798 | 123883 | 123798 | ID=Msa1379480-mRNA-1:cds;Parent=Msa1379480-mRNA-1 |
| tig0020279 | CDS | 122840 | 123145 | 122840 | ID=Msa1379480-mRNA-1:cds;Parent=Msa1379480-mRNA-1 |
| tig0020279 | CDS | 122490 | 122553 | 122490 | ID=Msa1379480-mRNA-1:cds;Parent=Msa1379480-mRNA-1 |
| tig0020279 | CDS | 122063 | 122344 | 122063 | ID=Msa1379480-mRNA-1:cds;Parent=Msa1379480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
