AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174280 MtrunA17_Chr8g0344101 97.653 554 13 0 1 554 53 606 0.0 1123
Msa1174280 MtrunA17_Chr5g0401131 30.864 405 237 12 165 548 108 490 1.17e-44 165
Msa1174280 MtrunA17_Chr2g0329591 26.964 471 279 15 111 548 13 451 1.54e-38 147
Msa1174280 MtrunA17_Chr5g0401421 26.636 428 250 12 169 547 33 445 6.48e-33 131
Msa1174280 MtrunA17_Chr4g0053901 27.586 435 245 13 164 547 52 467 8.20e-32 128
Msa1174280 MtrunA17_Chr2g0290241 24.874 398 253 14 169 548 56 425 1.70e-27 115
Msa1174280 MtrunA17_Chr1g0159461 25.377 398 257 14 166 548 220 592 4.45e-27 115
Msa1174280 MtrunA17_Chr3g0101141 26.000 400 246 15 169 548 173 542 2.90e-26 112
Msa1174280 MtrunA17_Chr3g0110971 24.623 398 251 9 172 549 220 588 2.38e-24 107
Msa1174280 MtrunA17_Chr8g0376381 24.936 389 246 12 172 549 170 523 3.42e-24 106
Msa1174280 MtrunA17_Chr4g0076091 25.124 402 246 15 169 547 173 542 2.00e-23 103
Msa1174280 MtrunA17_Chr5g0447691 25.871 402 244 15 169 548 175 544 3.12e-22 100
Msa1174280 MtrunA17_Chr5g0445331 24.439 401 255 14 169 548 159 532 8.55e-22 99.0
Msa1174280 MtrunA17_Chr7g0238891 24.779 452 276 16 130 548 320 740 9.58e-22 99.8
Msa1174280 MtrunA17_Chr4g0057891 24.641 418 265 13 153 548 131 520 2.09e-21 97.8
Msa1174280 MtrunA17_Chr2g0306641 24.874 398 246 12 170 548 124 487 5.68e-21 96.3
Msa1174280 MtrunA17_Chr3g0125811 23.383 402 266 15 163 548 195 570 9.74e-21 95.9
Msa1174280 MtrunA17_Chr7g0245601 24.289 387 244 11 175 548 442 792 1.06e-20 96.3
Msa1174280 MtrunA17_Chr4g0039661 25.745 369 249 10 185 548 207 555 6.70e-20 93.2
Msa1174280 MtrunA17_Chr7g0224271 23.762 404 254 12 170 548 299 673 1.41e-19 92.8
Msa1174280 MtrunA17_Chr2g0319091 25.441 397 250 15 169 547 210 578 1.32e-18 89.4
Msa1174280 MtrunA17_Chr2g0328411 24.505 404 247 14 171 551 289 657 4.77e-18 87.8
Msa1174280 MtrunA17_Chr2g0328391 24.873 394 241 15 160 524 288 655 1.87e-17 85.9
Msa1174280 MtrunA17_Chr1g0183641 24.570 407 255 13 156 547 107 476 4.00e-17 84.3
Msa1174280 MtrunA17_Chr2g0294461 20.050 399 282 9 168 549 208 586 5.52e-17 84.3
Msa1174280 MtrunA17_Chr4g0031721 23.849 478 301 16 103 547 236 683 7.42e-17 84.0
Msa1174280 MtrunA17_Chr8g0357601 22.169 415 275 13 155 549 167 553 6.85e-16 80.9
Msa1174280 MtrunA17_Chr3g0114841 24.205 409 271 12 160 547 109 499 7.59e-16 80.5
Msa1174280 MtrunA17_Chr2g0328431 22.506 431 276 14 139 547 259 653 3.15e-15 79.0
Msa1174280 MtrunA17_Chr2g0328341 24.260 507 313 18 69 547 174 637 9.45e-15 77.4
Msa1174280 MtrunA17_Chr4g0031711 23.834 386 235 13 171 524 361 719 9.65e-15 77.4
Msa1174280 MtrunA17_Chr4g0031701 25.505 396 236 16 171 539 254 617 1.53e-14 76.6
Msa1174280 MtrunA17_Chr2g0328401 23.301 412 248 15 144 526 263 635 1.70e-14 76.6
Msa1174280 MtrunA17_Chr4g0031731 24.742 388 229 15 171 524 254 612 2.39e-14 75.9
Msa1174280 MtrunA17_Chr2g0328381 24.566 403 241 15 171 547 275 640 2.42e-14 75.9
Msa1174280 MtrunA17_Chr5g0424131 22.588 425 302 11 144 554 94 505 3.21e-14 75.5
Msa1174280 MtrunA17_Chr4g0031741 23.604 394 256 13 171 547 284 649 4.16e-14 75.5
Msa1174280 MtrunA17_Chr1g0200401 22.794 408 259 13 170 548 79 459 7.54e-14 73.9
Msa1174280 MtrunA17_Chr2g0294471 20.388 412 272 11 163 549 197 577 1.42e-13 73.6
Msa1174280 MtrunA17_Chr4g0054071 36.937 111 66 2 167 274 129 238 6.04e-13 68.9
Msa1174280 MtrunA17_Chr4g0038851 23.947 451 259 16 165 551 42 472 6.21e-12 68.2
Msa1174280 MtrunA17_Chr7g0270031 21.053 399 280 12 162 549 181 555 8.43e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174280 AT3G13840.1 51.171 555 213 12 2 548 6 510 4.34e-178 512
Msa1174280 AT3G49950.1 30.713 407 237 11 164 547 23 407 9.25e-46 166
Msa1174280 AT4G37650.1 30.123 405 249 13 164 548 139 529 1.77e-43 162
Msa1174280 AT3G03450.1 27.390 387 248 10 172 549 184 546 6.83e-32 130
Msa1174280 AT5G17490.1 26.972 393 246 10 170 552 159 520 5.64e-29 121
Msa1174280 AT4G17230.1 25.879 398 249 14 169 548 156 525 5.01e-27 115
Msa1174280 AT4G17230.2 25.879 398 249 14 169 548 156 525 5.01e-27 115
Msa1174280 AT5G48150.1 26.010 396 246 13 172 548 123 490 1.17e-24 107
Msa1174280 AT5G48150.4 26.010 396 246 13 172 548 123 490 1.17e-24 107
Msa1174280 AT5G48150.2 26.010 396 246 13 172 548 123 490 1.17e-24 107
Msa1174280 AT5G48150.3 26.010 396 246 13 172 548 123 490 1.17e-24 107
Msa1174280 AT5G59450.1 25.180 556 320 22 39 548 93 598 6.68e-24 106
Msa1174280 AT1G14920.1 25.128 390 248 11 172 549 173 530 1.82e-23 104
Msa1174280 AT1G66350.1 25.128 390 246 12 172 551 156 509 1.90e-23 104
Msa1174280 AT5G66770.1 27.320 388 241 13 175 548 224 584 1.66e-22 102
Msa1174280 AT2G29065.1 24.936 393 262 8 171 547 252 627 6.90e-22 100
Msa1174280 AT2G01570.1 24.103 390 252 11 172 549 225 582 2.72e-21 98.2
Msa1174280 AT1G21450.1 24.557 395 259 15 169 548 223 593 3.08e-21 98.2
Msa1174280 AT1G50600.3 26.196 397 245 15 171 548 159 526 8.96e-20 93.2
Msa1174280 AT1G50600.1 26.055 403 238 14 171 548 230 597 1.12e-19 93.2
Msa1174280 AT1G50600.2 26.055 403 238 14 171 548 234 601 1.13e-19 93.2
Msa1174280 AT3G54220.1 24.936 389 240 12 175 547 297 649 1.30e-19 93.2
Msa1174280 AT3G50650.1 26.596 376 230 11 191 548 195 542 2.62e-19 91.7
Msa1174280 AT1G07520.1 23.762 505 325 13 79 547 212 692 3.34e-19 92.0
Msa1174280 AT1G07520.3 23.762 505 325 13 79 547 213 693 3.50e-19 92.0
Msa1174280 AT1G07520.2 23.762 505 325 13 79 547 48 528 4.23e-19 91.3
Msa1174280 AT1G07520.4 23.762 505 325 13 79 547 48 528 4.23e-19 91.3
Msa1174280 AT5G52510.1 26.316 323 197 10 249 548 336 640 3.08e-17 85.5
Msa1174280 AT5G41920.1 25.381 394 242 16 171 548 43 400 1.78e-16 82.0
Msa1174280 AT1G07530.1 25.058 431 275 16 137 547 362 764 3.12e-16 82.8
Msa1174280 AT1G50420.1 22.976 457 257 17 165 551 51 482 7.03e-16 80.9
Msa1174280 AT3G46600.1 24.228 421 231 16 171 552 212 583 2.02e-14 76.6
Msa1174280 AT3G46600.2 24.228 421 231 16 171 552 4 375 5.34e-14 74.3
Msa1174280 AT3G46600.3 24.228 421 231 16 171 552 180 551 5.34e-14 75.1
Msa1174280 AT1G55580.1 24.684 316 199 11 251 548 151 445 2.65e-13 72.8
Msa1174280 AT1G63100.1 22.760 413 247 18 171 547 252 628 1.42e-11 67.8
Msa1174280 AT1G63100.2 22.760 413 247 18 171 547 277 653 1.55e-11 67.4

Find 143 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCTTTCCATCATTCT+TGG 0.070532 8_1:+5356477 Msa1174280:CDS
TATCTGCAGATTGACATTTA+AGG 0.180511 8_1:-5357472 None:intergenic
CCAGATGGACCTACTGAAAA+TGG 0.187041 8_1:-5357411 None:intergenic
TCTTAAGTCTCTTGTTCTTT+TGG 0.246051 8_1:-5356756 None:intergenic
GGGTTTGCAGGGGAAGTATT+TGG 0.246526 8_1:+5357903 Msa1174280:CDS
CTGTTTCTTTCTGTTCTTTG+TGG 0.248275 8_1:+5358036 Msa1174280:CDS
AAAATGGGGTCTCCATATTT+TGG 0.254033 8_1:-5357395 None:intergenic
TTTCTGTTCTTTGTGGAAAC+TGG 0.270808 8_1:+5358043 Msa1174280:CDS
TCTGGTGATACTTTCTCTTC+TGG 0.283806 8_1:+5357429 Msa1174280:CDS
CATTGAAAATGACCAAAATA+TGG 0.300761 8_1:+5357383 Msa1174280:CDS
TGGATGTAACCATTGTTATA+TGG 0.301517 8_1:-5356505 None:intergenic
TGAACTGAGCACAGACAATA+AGG 0.307645 8_1:-5357563 None:intergenic
TTATTGTCTGTGCTCAGTTC+AGG 0.312907 8_1:+5357565 Msa1174280:CDS
ATTCAGATTTCCACCGGTTA+TGG 0.314217 8_1:-5356950 None:intergenic
AATTAGTATTGGCATCAATT+TGG 0.314452 8_1:-5356573 None:intergenic
TCACTTAATATTACCCCTTT+AGG 0.320054 8_1:-5357657 None:intergenic
CACGAAGAGTGGAGTACTTA+TGG 0.327317 8_1:+5357733 Msa1174280:CDS
TAAGGAAGTATGATAACAAT+TGG 0.334184 8_1:+5357958 Msa1174280:CDS
GGTACTGGTTACTTATATCT+TGG 0.359164 8_1:-5356552 None:intergenic
CACATTCTTGACTGGCTTGA+AGG 0.362157 8_1:+5356448 Msa1174280:CDS
ATGAAAGAAGCAGGGTTTGC+AGG 0.378552 8_1:+5357891 Msa1174280:CDS
CACAAAGAACAGAAAGAAAC+AGG 0.382192 8_1:-5358035 None:intergenic
AAGCCGGTGGTTGGCATCTC+CGG 0.385615 8_1:-5357019 None:intergenic
ATGACGAAGATGAAGATAAA+TGG 0.385639 8_1:-5357071 None:intergenic
ATTGTTACTGTTACTTCCAT+TGG 0.386351 8_1:-5356872 None:intergenic
GGGACGGTGGTTAGAAAATC+TGG 0.389102 8_1:+5356823 Msa1174280:CDS
ACTTTCTCTTCTGGACTCCT+TGG 0.394777 8_1:+5357438 Msa1174280:CDS
CCGATGAATGAAAGTGATAA+TGG 0.406397 8_1:+5356784 Msa1174280:CDS
TTTGGAGAGGATGCAATTGA+TGG 0.410953 8_1:+5357921 Msa1174280:CDS
ATGTGATCTGATGTTGGATT+TGG 0.414259 8_1:-5356430 None:intergenic
TCTTCGGCATTTCGTTTCTT+CGG 0.417116 8_1:-5356703 None:intergenic
AGAAACTCACTTCTTTCATC+AGG 0.418712 8_1:-5357612 None:intergenic
ATAGTACAAGTGTGGAACTA+TGG 0.422556 8_1:+5358000 Msa1174280:CDS
TTTCTTCGGCAAATCTGAAA+AGG 0.422754 8_1:-5356689 None:intergenic
CAGATGGACCTACTGAAAAT+GGG 0.424264 8_1:-5357410 None:intergenic
TTTGAGACTTAATTCATCTT+CGG 0.425894 8_1:-5356719 None:intergenic
GATTCCATATCTCATACTCT+TGG 0.427654 8_1:-5356525 None:intergenic
CCTTGTGCTGTAGCCATAAC+CGG 0.430036 8_1:+5356937 Msa1174280:CDS
GAAGCATTTGCTATGTTACT+AGG 0.433616 8_1:-5357192 None:intergenic
TCTTCGTCATCTACCCCATC+AGG 0.437019 8_1:+5357084 Msa1174280:CDS
GGTATGTTGTTAGAACTATT+AGG 0.437816 8_1:-5356667 None:intergenic
CAGTAACAATGGAAACAATA+AGG 0.442067 8_1:+5356885 Msa1174280:CDS
TGAGAGGCATGGAGCCTAAA+GGG 0.443623 8_1:+5357643 Msa1174280:CDS
AATGGAGATGCAGCTCTTGA+AGG 0.456048 8_1:+5356802 Msa1174280:CDS
TATTGGCATCAATTTGGTAC+TGG 0.457250 8_1:-5356567 None:intergenic
ATGGAGGTCGAGCTTTGTTA+AGG 0.458730 8_1:+5357940 Msa1174280:CDS
TGAAGGGTGCGCAAATTGTT+CGG 0.463218 8_1:-5357240 None:intergenic
AACCACCGGCTTGCAGCGCA+TGG 0.464860 8_1:+5357030 Msa1174280:CDS
CATCAGATCACATTCTTGAC+TGG 0.465424 8_1:+5356440 Msa1174280:CDS
CAGACAATAAGGGTTTCATC+AGG 0.467867 8_1:-5357552 None:intergenic
TGTGAAAGAATGAAAGAAGC+AGG 0.479878 8_1:+5357882 Msa1174280:CDS
CCATTATCACTTTCATTCAT+CGG 0.481330 8_1:-5356784 None:intergenic
GGCATTAGAAGAATTAGTAT+TGG 0.481797 8_1:-5356584 None:intergenic
ATTTGCTATGTTACTAGGAA+AGG 0.483089 8_1:-5357187 None:intergenic
CTCAAGGCCTCTAGAAAAGT+TGG 0.483348 8_1:-5357300 None:intergenic
AAGGAAGTATGATAACAATT+GGG 0.487490 8_1:+5357959 Msa1174280:CDS
ATGCGCTGCAAGCCGGTGGT+TGG 0.488488 8_1:-5357028 None:intergenic
TGATGTTGGATTTGGTTCCA+TGG 0.491247 8_1:-5356422 None:intergenic
CTTGACATTGGAGTCTCTCA+TGG 0.497221 8_1:+5357267 Msa1174280:CDS
TGAAAGAAGCAGGGTTTGCA+GGG 0.503859 8_1:+5357892 Msa1174280:CDS
ACATCCAAGAGTATGAGATA+TGG 0.506767 8_1:+5356521 Msa1174280:CDS
TATGGATCATCCAAGAATGA+TGG 0.507403 8_1:-5356487 None:intergenic
TTCAGCTAGAACTTGAAGAA+TGG 0.511790 8_1:-5357214 None:intergenic
TTCTCCTTTCATCACTGTCA+CGG 0.512017 8_1:-5357791 None:intergenic
TTCTTCGGCAAATCTGAAAA+GGG 0.512552 8_1:-5356688 None:intergenic
AATGTTAGTTGTGCTGTTTG+TGG 0.520846 8_1:-5356605 None:intergenic
GAAGACCATGCGCTGCAAGC+CGG 0.522939 8_1:-5357035 None:intergenic
TTAGCATTCAATGTCTGCAA+TGG 0.523978 8_1:-5357513 None:intergenic
CTCCAATGTCAAGGATGTGA+AGG 0.528283 8_1:-5357257 None:intergenic
CAAAAGTTATAGTCCCTGAT+GGG 0.531586 8_1:-5357098 None:intergenic
ATGGAGATGCAGCTCTTGAA+GGG 0.536419 8_1:+5356803 Msa1174280:CDS
TTGAGAGGCATGGAGCCTAA+AGG 0.536843 8_1:+5357642 Msa1174280:CDS
CCGGTTATGGCTACAGCACA+AGG 0.536994 8_1:-5356937 None:intergenic
CACACGATTCAGATTTCCAC+CGG 0.537218 8_1:-5356956 None:intergenic
AAATCTGGTGGGAACAAGAA+AGG 0.541486 8_1:+5356838 Msa1174280:CDS
GACAATAAGGGTTTCATCAG+GGG 0.542576 8_1:-5357550 None:intergenic
TGTTAGAACTATTAGGCTCA+AGG 0.546508 8_1:-5356660 None:intergenic
TCCTTTCGTTCATTTCACGC+TGG 0.552507 8_1:-5357848 None:intergenic
GAACAAGAAAGGTGCAGCTA+AGG 0.556763 8_1:+5356849 Msa1174280:CDS
AAGAGGCATTAACGACAGTA+AGG 0.559463 8_1:-5357356 None:intergenic
CACTCTTCGTGAGAATCCGT+TGG 0.559554 8_1:-5357721 None:intergenic
CATGAGCTAGCCTCAACTAC+CGG 0.561483 8_1:+5357000 Msa1174280:CDS
ACAAGAGGAGGAGGTCCACC+AGG 0.563233 8_1:-5357330 None:intergenic
CAGTGATGAAAGGAGAATGA+TGG 0.563415 8_1:+5357797 Msa1174280:CDS
TCTGAAGGTGTTGAGAGGCA+TGG 0.564144 8_1:+5357632 Msa1174280:CDS
ATGTTGAGCTTGAACTACTC+TGG 0.564625 8_1:-5358074 None:intergenic
ATGGAAACAATAAGGATGGT+AGG 0.566559 8_1:+5356893 Msa1174280:CDS
CTCAAGGGATGTTATACTTG+TGG 0.567441 8_1:-5356644 None:intergenic
AACAATGGAAACAATAAGGA+TGG 0.567730 8_1:+5356889 Msa1174280:CDS
AATGGAAGTAACAGTAACAA+TGG 0.568724 8_1:+5356874 Msa1174280:CDS
GCAAAAGTTATAGTCCCTGA+TGG 0.570125 8_1:-5357099 None:intergenic
TGCAGGGGAAGTATTTGGAG+AGG 0.571772 8_1:+5357908 Msa1174280:CDS
GACCATGCGCTGCAAGCCGG+TGG 0.571829 8_1:-5357032 None:intergenic
GTTAGAACTATTAGGCTCAA+GGG 0.573060 8_1:-5356659 None:intergenic
GTAAGGCGAACAAGAGGAGG+AGG 0.573398 8_1:-5357339 None:intergenic
GAACTGAGCACAGACAATAA+GGG 0.574095 8_1:-5357562 None:intergenic
AAAGGTGCAGCTAAGGCCAA+TGG 0.579176 8_1:+5356856 Msa1174280:CDS
GAGGCCTTGAGTCGTCGACC+TGG 0.583244 8_1:+5357312 Msa1174280:CDS
GTTGGCATCTCCGGTAGTTG+AGG 0.586159 8_1:-5357010 None:intergenic
AGTTCTACGAGGTTAGCCCT+TGG 0.589690 8_1:+5357160 Msa1174280:CDS
CAACGGATTCTCACGAAGAG+TGG 0.590408 8_1:+5357722 Msa1174280:CDS
ACCCTTCACATCCTTGACAT+TGG 0.592655 8_1:+5357255 Msa1174280:CDS
CTACCGGAGATGCCAACCAC+CGG 0.595926 8_1:+5357016 Msa1174280:CDS
AGACAATAAGGGTTTCATCA+GGG 0.596272 8_1:-5357551 None:intergenic
ACAGTAAGGCGAACAAGAGG+AGG 0.598078 8_1:-5357342 None:intergenic
AGAAGAAAATAGTACAAGTG+TGG 0.598352 8_1:+5357992 Msa1174280:CDS
GAGTTTCTGAAGGTGTTGAG+AGG 0.604609 8_1:+5357627 Msa1174280:CDS
TTGGATGATCCATATAACAA+TGG 0.604773 8_1:+5356496 Msa1174280:CDS
GAGTGTTGTTGCAGTAGTTG+TGG 0.605351 8_1:+5357690 Msa1174280:CDS
AAAACCGTGACAGTGATGAA+AGG 0.606029 8_1:+5357787 Msa1174280:CDS
TCAAGAATGTGATCTGATGT+TGG 0.611351 8_1:-5356436 None:intergenic
AGATGCAGCTCTTGAAGGGA+CGG 0.612821 8_1:+5356807 Msa1174280:CDS
AAACAATAAGGATGGTAGGT+GGG 0.614807 8_1:+5356897 Msa1174280:CDS
GTACAAGTGTGGAACTATGG+TGG 0.621371 8_1:+5358003 Msa1174280:CDS
ACCAGCGTGAAATGAACGAA+AGG 0.622182 8_1:+5357847 Msa1174280:CDS
CTTCGTCATCTACCCCATCA+GGG 0.622872 8_1:+5357085 Msa1174280:CDS
AAGAACAGAAAGAAACAGGT+TGG 0.623585 8_1:-5358031 None:intergenic
GTGAAAGAATGAAAGAAGCA+GGG 0.627954 8_1:+5357883 Msa1174280:CDS
TCCAATGTCAAGGATGTGAA+GGG 0.631798 8_1:-5357256 None:intergenic
GAAGAGAAAGTATCACCAGA+TGG 0.632861 8_1:-5357426 None:intergenic
GAAACAATAAGGATGGTAGG+TGG 0.634500 8_1:+5356896 Msa1174280:CDS
GGAGAGGATGCAATTGATGG+AGG 0.634715 8_1:+5357924 Msa1174280:CDS
GAGTCTCTCATGGTGTGCAA+TGG 0.634794 8_1:+5357277 Msa1174280:CDS
CATGAGAGACTCCAATGTCA+AGG 0.642013 8_1:-5357266 None:intergenic
GAGAGGCATGGAGCCTAAAG+GGG 0.644363 8_1:+5357644 Msa1174280:CDS
TTACTAGGAAAGGAAAACCA+AGG 0.646391 8_1:-5357177 None:intergenic
TACTAGGAAAGGAAAACCAA+GGG 0.646959 8_1:-5357176 None:intergenic
ACGACAGTAAGGCGAACAAG+AGG 0.653539 8_1:-5357345 None:intergenic
AAGGAGAATGATGGAAGGTG+AGG 0.653865 8_1:+5357806 Msa1174280:CDS
TTAAGGATTGAGCATAACCA+AGG 0.659329 8_1:-5357455 None:intergenic
AGATGGACCTACTGAAAATG+GGG 0.663709 8_1:-5357409 None:intergenic
AATATTAAGTGAGAACAACA+TGG 0.666720 8_1:+5357668 Msa1174280:CDS
TGAAAGAAGTGAGTTTCTGA+AGG 0.676073 8_1:+5357617 Msa1174280:CDS
TGCAGCTCTTGAAGGGACGG+TGG 0.681085 8_1:+5356810 Msa1174280:CDS
TGTGCTGTAGCCATAACCGG+TGG 0.681250 8_1:+5356940 Msa1174280:CDS
GATGAAAGGAGAATGATGGA+AGG 0.683629 8_1:+5357801 Msa1174280:CDS
GAAAGAAGCAGGGTTTGCAG+GGG 0.689170 8_1:+5357893 Msa1174280:CDS
AAAAGTTATAGTCCCTGATG+GGG 0.695486 8_1:-5357097 None:intergenic
ACGGTGGTTAGAAAATCTGG+TGG 0.698436 8_1:+5356826 Msa1174280:CDS
GAAGAGTGGAGTACTTATGG+AGG 0.701033 8_1:+5357736 Msa1174280:CDS
CGGTGGTTAGAAAATCTGGT+GGG 0.703407 8_1:+5356827 Msa1174280:CDS
CGGTTATGGCTACAGCACAA+GGG 0.712194 8_1:-5356936 None:intergenic
ATCATTACTGAAGTTCTACG+AGG 0.730047 8_1:+5357149 Msa1174280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAGTATTGGCATCAATT+TGG - chr8_1:5356576-5356595 None:intergenic 25.0%
!! TTTGAGACTTAATTCATCTT+CGG - chr8_1:5356722-5356741 None:intergenic 25.0%
!! AGAACTTCAGTAATGATTTT+TGG - chr8_1:5357146-5357165 None:intergenic 25.0%
!!! CATATTTTGGTCATTTTCAA+TGG - chr8_1:5357385-5357404 None:intergenic 25.0%
! CATTGAAAATGACCAAAATA+TGG + chr8_1:5357383-5357402 Msa1174280:CDS 25.0%
! AATATTAAGTGAGAACAACA+TGG + chr8_1:5357668-5357687 Msa1174280:CDS 25.0%
!! TAAGGAAGTATGATAACAAT+TGG + chr8_1:5357958-5357977 Msa1174280:CDS 25.0%
!! AAGGAAGTATGATAACAATT+GGG + chr8_1:5357959-5357978 Msa1174280:CDS 25.0%
!!! AATTAGTATTGGCATCAATT+TGG - chr8_1:5356576-5356595 None:intergenic 25.0%
!! TTTGAGACTTAATTCATCTT+CGG - chr8_1:5356722-5356741 None:intergenic 25.0%
!! AGAACTTCAGTAATGATTTT+TGG - chr8_1:5357146-5357165 None:intergenic 25.0%
!!! CATATTTTGGTCATTTTCAA+TGG - chr8_1:5357385-5357404 None:intergenic 25.0%
! CATTGAAAATGACCAAAATA+TGG + chr8_1:5357383-5357402 Msa1174280:CDS 25.0%
! AATATTAAGTGAGAACAACA+TGG + chr8_1:5357668-5357687 Msa1174280:CDS 25.0%
!! TAAGGAAGTATGATAACAAT+TGG + chr8_1:5357958-5357977 Msa1174280:CDS 25.0%
!! AAGGAAGTATGATAACAATT+GGG + chr8_1:5357959-5357978 Msa1174280:CDS 25.0%
TTGGATGATCCATATAACAA+TGG + chr8_1:5356496-5356515 Msa1174280:CDS 30.0%
TGGATGTAACCATTGTTATA+TGG - chr8_1:5356508-5356527 None:intergenic 30.0%
GGCATTAGAAGAATTAGTAT+TGG - chr8_1:5356587-5356606 None:intergenic 30.0%
GGTATGTTGTTAGAACTATT+AGG - chr8_1:5356670-5356689 None:intergenic 30.0%
! TCTTAAGTCTCTTGTTCTTT+TGG - chr8_1:5356759-5356778 None:intergenic 30.0%
CCATTATCACTTTCATTCAT+CGG - chr8_1:5356787-5356806 None:intergenic 30.0%
! ATTGTTACTGTTACTTCCAT+TGG - chr8_1:5356875-5356894 None:intergenic 30.0%
AATGGAAGTAACAGTAACAA+TGG + chr8_1:5356874-5356893 Msa1174280:CDS 30.0%
CAGTAACAATGGAAACAATA+AGG + chr8_1:5356885-5356904 Msa1174280:CDS 30.0%
AACAATGGAAACAATAAGGA+TGG + chr8_1:5356889-5356908 Msa1174280:CDS 30.0%
ATGACGAAGATGAAGATAAA+TGG - chr8_1:5357074-5357093 None:intergenic 30.0%
!! AATGATTTTTGGAAGAATCG+CGG - chr8_1:5357135-5357154 None:intergenic 30.0%
!! ATTTGCTATGTTACTAGGAA+AGG - chr8_1:5357190-5357209 None:intergenic 30.0%
TATCTGCAGATTGACATTTA+AGG - chr8_1:5357475-5357494 None:intergenic 30.0%
TCACTTAATATTACCCCTTT+AGG - chr8_1:5357660-5357679 None:intergenic 30.0%
!! GTTTTTAGATTCAACCAGTT+CGG + chr8_1:5357758-5357777 Msa1174280:CDS 30.0%
AGAAGAAAATAGTACAAGTG+TGG + chr8_1:5357992-5358011 Msa1174280:CDS 30.0%
TTGGATGATCCATATAACAA+TGG + chr8_1:5356496-5356515 Msa1174280:CDS 30.0%
TGGATGTAACCATTGTTATA+TGG - chr8_1:5356508-5356527 None:intergenic 30.0%
GGCATTAGAAGAATTAGTAT+TGG - chr8_1:5356587-5356606 None:intergenic 30.0%
GGTATGTTGTTAGAACTATT+AGG - chr8_1:5356670-5356689 None:intergenic 30.0%
! TCTTAAGTCTCTTGTTCTTT+TGG - chr8_1:5356759-5356778 None:intergenic 30.0%
CCATTATCACTTTCATTCAT+CGG - chr8_1:5356787-5356806 None:intergenic 30.0%
! ATTGTTACTGTTACTTCCAT+TGG - chr8_1:5356875-5356894 None:intergenic 30.0%
AATGGAAGTAACAGTAACAA+TGG + chr8_1:5356874-5356893 Msa1174280:CDS 30.0%
CAGTAACAATGGAAACAATA+AGG + chr8_1:5356885-5356904 Msa1174280:CDS 30.0%
AACAATGGAAACAATAAGGA+TGG + chr8_1:5356889-5356908 Msa1174280:CDS 30.0%
ATGACGAAGATGAAGATAAA+TGG - chr8_1:5357074-5357093 None:intergenic 30.0%
!! AATGATTTTTGGAAGAATCG+CGG - chr8_1:5357135-5357154 None:intergenic 30.0%
!! ATTTGCTATGTTACTAGGAA+AGG - chr8_1:5357190-5357209 None:intergenic 30.0%
TATCTGCAGATTGACATTTA+AGG - chr8_1:5357475-5357494 None:intergenic 30.0%
TCACTTAATATTACCCCTTT+AGG - chr8_1:5357660-5357679 None:intergenic 30.0%
!! GTTTTTAGATTCAACCAGTT+CGG + chr8_1:5357758-5357777 Msa1174280:CDS 30.0%
AGAAGAAAATAGTACAAGTG+TGG + chr8_1:5357992-5358011 Msa1174280:CDS 30.0%
ATGTGATCTGATGTTGGATT+TGG - chr8_1:5356433-5356452 None:intergenic 35.0%
TCAAGAATGTGATCTGATGT+TGG - chr8_1:5356439-5356458 None:intergenic 35.0%
CTCTTTCTTTCCATCATTCT+TGG + chr8_1:5356477-5356496 Msa1174280:CDS 35.0%
TATGGATCATCCAAGAATGA+TGG - chr8_1:5356490-5356509 None:intergenic 35.0%
! ACATCCAAGAGTATGAGATA+TGG + chr8_1:5356521-5356540 Msa1174280:CDS 35.0%
GATTCCATATCTCATACTCT+TGG - chr8_1:5356528-5356547 None:intergenic 35.0%
!! GGTACTGGTTACTTATATCT+TGG - chr8_1:5356555-5356574 None:intergenic 35.0%
TATTGGCATCAATTTGGTAC+TGG - chr8_1:5356570-5356589 None:intergenic 35.0%
!! AATGTTAGTTGTGCTGTTTG+TGG - chr8_1:5356608-5356627 None:intergenic 35.0%
GTTAGAACTATTAGGCTCAA+GGG - chr8_1:5356662-5356681 None:intergenic 35.0%
TGTTAGAACTATTAGGCTCA+AGG - chr8_1:5356663-5356682 None:intergenic 35.0%
TTCTTCGGCAAATCTGAAAA+GGG - chr8_1:5356691-5356710 None:intergenic 35.0%
TTTCTTCGGCAAATCTGAAA+AGG - chr8_1:5356692-5356711 None:intergenic 35.0%
!!! CTCTTGTTCTTTTGGTTTTG+TGG - chr8_1:5356751-5356770 None:intergenic 35.0%
CCGATGAATGAAAGTGATAA+TGG + chr8_1:5356784-5356803 Msa1174280:CDS 35.0%
ATGGAAACAATAAGGATGGT+AGG + chr8_1:5356893-5356912 Msa1174280:CDS 35.0%
AAACAATAAGGATGGTAGGT+GGG + chr8_1:5356897-5356916 Msa1174280:CDS 35.0%
AAAAGTTATAGTCCCTGATG+GGG - chr8_1:5357100-5357119 None:intergenic 35.0%
CAAAAGTTATAGTCCCTGAT+GGG - chr8_1:5357101-5357120 None:intergenic 35.0%
ATCATTACTGAAGTTCTACG+AGG + chr8_1:5357149-5357168 Msa1174280:CDS 35.0%
TACTAGGAAAGGAAAACCAA+GGG - chr8_1:5357179-5357198 None:intergenic 35.0%
TTACTAGGAAAGGAAAACCA+AGG - chr8_1:5357180-5357199 None:intergenic 35.0%
!! GAAGCATTTGCTATGTTACT+AGG - chr8_1:5357195-5357214 None:intergenic 35.0%
TTCAGCTAGAACTTGAAGAA+TGG - chr8_1:5357217-5357236 None:intergenic 35.0%
!! GTCATTTTCAATGGATGAAG+AGG - chr8_1:5357376-5357395 None:intergenic 35.0%
! AAAATGGGGTCTCCATATTT+TGG - chr8_1:5357398-5357417 None:intergenic 35.0%
TTAAGGATTGAGCATAACCA+AGG - chr8_1:5357458-5357477 None:intergenic 35.0%
TTAGCATTCAATGTCTGCAA+TGG - chr8_1:5357516-5357535 None:intergenic 35.0%
AGACAATAAGGGTTTCATCA+GGG - chr8_1:5357554-5357573 None:intergenic 35.0%
AGAAACTCACTTCTTTCATC+AGG - chr8_1:5357615-5357634 None:intergenic 35.0%
TGAAAGAAGTGAGTTTCTGA+AGG + chr8_1:5357617-5357636 Msa1174280:CDS 35.0%
TGAACGAAAGGAGAGAAAAA+TGG + chr8_1:5357859-5357878 Msa1174280:CDS 35.0%
TGTGAAAGAATGAAAGAAGC+AGG + chr8_1:5357882-5357901 Msa1174280:CDS 35.0%
GTGAAAGAATGAAAGAAGCA+GGG + chr8_1:5357883-5357902 Msa1174280:CDS 35.0%
ATAGTACAAGTGTGGAACTA+TGG + chr8_1:5358000-5358019 Msa1174280:CDS 35.0%
AAGAACAGAAAGAAACAGGT+TGG - chr8_1:5358034-5358053 None:intergenic 35.0%
CACAAAGAACAGAAAGAAAC+AGG - chr8_1:5358038-5358057 None:intergenic 35.0%
! CTGTTTCTTTCTGTTCTTTG+TGG + chr8_1:5358036-5358055 Msa1174280:CDS 35.0%
TTTCTGTTCTTTGTGGAAAC+TGG + chr8_1:5358043-5358062 Msa1174280:CDS 35.0%
ATGTGATCTGATGTTGGATT+TGG - chr8_1:5356433-5356452 None:intergenic 35.0%
TCAAGAATGTGATCTGATGT+TGG - chr8_1:5356439-5356458 None:intergenic 35.0%
CTCTTTCTTTCCATCATTCT+TGG + chr8_1:5356477-5356496 Msa1174280:CDS 35.0%
TATGGATCATCCAAGAATGA+TGG - chr8_1:5356490-5356509 None:intergenic 35.0%
! ACATCCAAGAGTATGAGATA+TGG + chr8_1:5356521-5356540 Msa1174280:CDS 35.0%
GATTCCATATCTCATACTCT+TGG - chr8_1:5356528-5356547 None:intergenic 35.0%
!! GGTACTGGTTACTTATATCT+TGG - chr8_1:5356555-5356574 None:intergenic 35.0%
TATTGGCATCAATTTGGTAC+TGG - chr8_1:5356570-5356589 None:intergenic 35.0%
!! AATGTTAGTTGTGCTGTTTG+TGG - chr8_1:5356608-5356627 None:intergenic 35.0%
GTTAGAACTATTAGGCTCAA+GGG - chr8_1:5356662-5356681 None:intergenic 35.0%
TGTTAGAACTATTAGGCTCA+AGG - chr8_1:5356663-5356682 None:intergenic 35.0%
TTCTTCGGCAAATCTGAAAA+GGG - chr8_1:5356691-5356710 None:intergenic 35.0%
TTTCTTCGGCAAATCTGAAA+AGG - chr8_1:5356692-5356711 None:intergenic 35.0%
!!! CTCTTGTTCTTTTGGTTTTG+TGG - chr8_1:5356751-5356770 None:intergenic 35.0%
CCGATGAATGAAAGTGATAA+TGG + chr8_1:5356784-5356803 Msa1174280:CDS 35.0%
ATGGAAACAATAAGGATGGT+AGG + chr8_1:5356893-5356912 Msa1174280:CDS 35.0%
AAACAATAAGGATGGTAGGT+GGG + chr8_1:5356897-5356916 Msa1174280:CDS 35.0%
AAAAGTTATAGTCCCTGATG+GGG - chr8_1:5357100-5357119 None:intergenic 35.0%
CAAAAGTTATAGTCCCTGAT+GGG - chr8_1:5357101-5357120 None:intergenic 35.0%
ATCATTACTGAAGTTCTACG+AGG + chr8_1:5357149-5357168 Msa1174280:CDS 35.0%
TACTAGGAAAGGAAAACCAA+GGG - chr8_1:5357179-5357198 None:intergenic 35.0%
TTACTAGGAAAGGAAAACCA+AGG - chr8_1:5357180-5357199 None:intergenic 35.0%
!! GAAGCATTTGCTATGTTACT+AGG - chr8_1:5357195-5357214 None:intergenic 35.0%
TTCAGCTAGAACTTGAAGAA+TGG - chr8_1:5357217-5357236 None:intergenic 35.0%
!! GTCATTTTCAATGGATGAAG+AGG - chr8_1:5357376-5357395 None:intergenic 35.0%
! AAAATGGGGTCTCCATATTT+TGG - chr8_1:5357398-5357417 None:intergenic 35.0%
TTAAGGATTGAGCATAACCA+AGG - chr8_1:5357458-5357477 None:intergenic 35.0%
TTAGCATTCAATGTCTGCAA+TGG - chr8_1:5357516-5357535 None:intergenic 35.0%
AGACAATAAGGGTTTCATCA+GGG - chr8_1:5357554-5357573 None:intergenic 35.0%
AGAAACTCACTTCTTTCATC+AGG - chr8_1:5357615-5357634 None:intergenic 35.0%
TGAAAGAAGTGAGTTTCTGA+AGG + chr8_1:5357617-5357636 Msa1174280:CDS 35.0%
TGAACGAAAGGAGAGAAAAA+TGG + chr8_1:5357859-5357878 Msa1174280:CDS 35.0%
TGTGAAAGAATGAAAGAAGC+AGG + chr8_1:5357882-5357901 Msa1174280:CDS 35.0%
GTGAAAGAATGAAAGAAGCA+GGG + chr8_1:5357883-5357902 Msa1174280:CDS 35.0%
ATAGTACAAGTGTGGAACTA+TGG + chr8_1:5358000-5358019 Msa1174280:CDS 35.0%
AAGAACAGAAAGAAACAGGT+TGG - chr8_1:5358034-5358053 None:intergenic 35.0%
CACAAAGAACAGAAAGAAAC+AGG - chr8_1:5358038-5358057 None:intergenic 35.0%
! CTGTTTCTTTCTGTTCTTTG+TGG + chr8_1:5358036-5358055 Msa1174280:CDS 35.0%
TTTCTGTTCTTTGTGGAAAC+TGG + chr8_1:5358043-5358062 Msa1174280:CDS 35.0%
! TGATGTTGGATTTGGTTCCA+TGG - chr8_1:5356425-5356444 None:intergenic 40.0%
CATCAGATCACATTCTTGAC+TGG + chr8_1:5356440-5356459 Msa1174280:CDS 40.0%
CTCAAGGGATGTTATACTTG+TGG - chr8_1:5356647-5356666 None:intergenic 40.0%
TCTTCGGCATTTCGTTTCTT+CGG - chr8_1:5356706-5356725 None:intergenic 40.0%
AAATCTGGTGGGAACAAGAA+AGG + chr8_1:5356838-5356857 Msa1174280:CDS 40.0%
GAAACAATAAGGATGGTAGG+TGG + chr8_1:5356896-5356915 Msa1174280:CDS 40.0%
! ATTCAGATTTCCACCGGTTA+TGG - chr8_1:5356953-5356972 None:intergenic 40.0%
GCAAAAGTTATAGTCCCTGA+TGG - chr8_1:5357102-5357121 None:intergenic 40.0%
TCCAATGTCAAGGATGTGAA+GGG - chr8_1:5357259-5357278 None:intergenic 40.0%
!! AAGAGGCATTAACGACAGTA+AGG - chr8_1:5357359-5357378 None:intergenic 40.0%
AGATGGACCTACTGAAAATG+GGG - chr8_1:5357412-5357431 None:intergenic 40.0%
CAGATGGACCTACTGAAAAT+GGG - chr8_1:5357413-5357432 None:intergenic 40.0%
!! GAAGAGAAAGTATCACCAGA+TGG - chr8_1:5357429-5357448 None:intergenic 40.0%
TCTGGTGATACTTTCTCTTC+TGG + chr8_1:5357429-5357448 Msa1174280:CDS 40.0%
GACAATAAGGGTTTCATCAG+GGG - chr8_1:5357553-5357572 None:intergenic 40.0%
CAGACAATAAGGGTTTCATC+AGG - chr8_1:5357555-5357574 None:intergenic 40.0%
GAACTGAGCACAGACAATAA+GGG - chr8_1:5357565-5357584 None:intergenic 40.0%
TGAACTGAGCACAGACAATA+AGG - chr8_1:5357566-5357585 None:intergenic 40.0%
TTATTGTCTGTGCTCAGTTC+AGG + chr8_1:5357565-5357584 Msa1174280:CDS 40.0%
AAAACCGTGACAGTGATGAA+AGG + chr8_1:5357787-5357806 Msa1174280:CDS 40.0%
TTCTCCTTTCATCACTGTCA+CGG - chr8_1:5357794-5357813 None:intergenic 40.0%
CAGTGATGAAAGGAGAATGA+TGG + chr8_1:5357797-5357816 Msa1174280:CDS 40.0%
! GATGAAAGGAGAATGATGGA+AGG + chr8_1:5357801-5357820 Msa1174280:CDS 40.0%
TTTGGAGAGGATGCAATTGA+TGG + chr8_1:5357921-5357940 Msa1174280:CDS 40.0%
! TGATGTTGGATTTGGTTCCA+TGG - chr8_1:5356425-5356444 None:intergenic 40.0%
CATCAGATCACATTCTTGAC+TGG + chr8_1:5356440-5356459 Msa1174280:CDS 40.0%
CTCAAGGGATGTTATACTTG+TGG - chr8_1:5356647-5356666 None:intergenic 40.0%
TCTTCGGCATTTCGTTTCTT+CGG - chr8_1:5356706-5356725 None:intergenic 40.0%
AAATCTGGTGGGAACAAGAA+AGG + chr8_1:5356838-5356857 Msa1174280:CDS 40.0%
GAAACAATAAGGATGGTAGG+TGG + chr8_1:5356896-5356915 Msa1174280:CDS 40.0%
! ATTCAGATTTCCACCGGTTA+TGG - chr8_1:5356953-5356972 None:intergenic 40.0%
GCAAAAGTTATAGTCCCTGA+TGG - chr8_1:5357102-5357121 None:intergenic 40.0%
TCCAATGTCAAGGATGTGAA+GGG - chr8_1:5357259-5357278 None:intergenic 40.0%
!! AAGAGGCATTAACGACAGTA+AGG - chr8_1:5357359-5357378 None:intergenic 40.0%
AGATGGACCTACTGAAAATG+GGG - chr8_1:5357412-5357431 None:intergenic 40.0%
CAGATGGACCTACTGAAAAT+GGG - chr8_1:5357413-5357432 None:intergenic 40.0%
!! GAAGAGAAAGTATCACCAGA+TGG - chr8_1:5357429-5357448 None:intergenic 40.0%
TCTGGTGATACTTTCTCTTC+TGG + chr8_1:5357429-5357448 Msa1174280:CDS 40.0%
GACAATAAGGGTTTCATCAG+GGG - chr8_1:5357553-5357572 None:intergenic 40.0%
CAGACAATAAGGGTTTCATC+AGG - chr8_1:5357555-5357574 None:intergenic 40.0%
GAACTGAGCACAGACAATAA+GGG - chr8_1:5357565-5357584 None:intergenic 40.0%
TGAACTGAGCACAGACAATA+AGG - chr8_1:5357566-5357585 None:intergenic 40.0%
TTATTGTCTGTGCTCAGTTC+AGG + chr8_1:5357565-5357584 Msa1174280:CDS 40.0%
AAAACCGTGACAGTGATGAA+AGG + chr8_1:5357787-5357806 Msa1174280:CDS 40.0%
TTCTCCTTTCATCACTGTCA+CGG - chr8_1:5357794-5357813 None:intergenic 40.0%
CAGTGATGAAAGGAGAATGA+TGG + chr8_1:5357797-5357816 Msa1174280:CDS 40.0%
! GATGAAAGGAGAATGATGGA+AGG + chr8_1:5357801-5357820 Msa1174280:CDS 40.0%
TTTGGAGAGGATGCAATTGA+TGG + chr8_1:5357921-5357940 Msa1174280:CDS 40.0%
!! CACATTCTTGACTGGCTTGA+AGG + chr8_1:5356448-5356467 Msa1174280:CDS 45.0%
AATGGAGATGCAGCTCTTGA+AGG + chr8_1:5356802-5356821 Msa1174280:CDS 45.0%
ATGGAGATGCAGCTCTTGAA+GGG + chr8_1:5356803-5356822 Msa1174280:CDS 45.0%
ACGGTGGTTAGAAAATCTGG+TGG + chr8_1:5356826-5356845 Msa1174280:CDS 45.0%
CGGTGGTTAGAAAATCTGGT+GGG + chr8_1:5356827-5356846 Msa1174280:CDS 45.0%
! GAACAAGAAAGGTGCAGCTA+AGG + chr8_1:5356849-5356868 Msa1174280:CDS 45.0%
CACACGATTCAGATTTCCAC+CGG - chr8_1:5356959-5356978 None:intergenic 45.0%
! TGAAGGGTGCGCAAATTGTT+CGG - chr8_1:5357243-5357262 None:intergenic 45.0%
ACCCTTCACATCCTTGACAT+TGG + chr8_1:5357255-5357274 Msa1174280:CDS 45.0%
CTCCAATGTCAAGGATGTGA+AGG - chr8_1:5357260-5357279 None:intergenic 45.0%
CATGAGAGACTCCAATGTCA+AGG - chr8_1:5357269-5357288 None:intergenic 45.0%
CTTGACATTGGAGTCTCTCA+TGG + chr8_1:5357267-5357286 Msa1174280:CDS 45.0%
! GCAATGGCCAACTTTTCTAG+AGG + chr8_1:5357293-5357312 Msa1174280:CDS 45.0%
! CTCAAGGCCTCTAGAAAAGT+TGG - chr8_1:5357303-5357322 None:intergenic 45.0%
! ATGGAGACCCCATTTTCAGT+AGG + chr8_1:5357402-5357421 Msa1174280:CDS 45.0%
CCAGATGGACCTACTGAAAA+TGG - chr8_1:5357414-5357433 None:intergenic 45.0%
! CCATTTTCAGTAGGTCCATC+TGG + chr8_1:5357411-5357430 Msa1174280:CDS 45.0%
ACTTTCTCTTCTGGACTCCT+TGG + chr8_1:5357438-5357457 Msa1174280:CDS 45.0%
!! GAGTTTCTGAAGGTGTTGAG+AGG + chr8_1:5357627-5357646 Msa1174280:CDS 45.0%
! GAGTGTTGTTGCAGTAGTTG+TGG + chr8_1:5357690-5357709 Msa1174280:CDS 45.0%
! AGTTGTGGCGATTTTGCCAA+CGG + chr8_1:5357705-5357724 Msa1174280:CDS 45.0%
! CACGAAGAGTGGAGTACTTA+TGG + chr8_1:5357733-5357752 Msa1174280:CDS 45.0%
! GAAGAGTGGAGTACTTATGG+AGG + chr8_1:5357736-5357755 Msa1174280:CDS 45.0%
! ACGGTTTTTGAATGCCGAAC+TGG - chr8_1:5357775-5357794 None:intergenic 45.0%
! AAGGAGAATGATGGAAGGTG+AGG + chr8_1:5357806-5357825 Msa1174280:CDS 45.0%
ACCAGCGTGAAATGAACGAA+AGG + chr8_1:5357847-5357866 Msa1174280:CDS 45.0%
TCCTTTCGTTCATTTCACGC+TGG - chr8_1:5357851-5357870 None:intergenic 45.0%
ATGAAAGAAGCAGGGTTTGC+AGG + chr8_1:5357891-5357910 Msa1174280:CDS 45.0%
TGAAAGAAGCAGGGTTTGCA+GGG + chr8_1:5357892-5357911 Msa1174280:CDS 45.0%
!! ATGGAGGTCGAGCTTTGTTA+AGG + chr8_1:5357940-5357959 Msa1174280:CDS 45.0%
GTACAAGTGTGGAACTATGG+TGG + chr8_1:5358003-5358022 Msa1174280:CDS 45.0%
!! CACATTCTTGACTGGCTTGA+AGG + chr8_1:5356448-5356467 Msa1174280:CDS 45.0%
AATGGAGATGCAGCTCTTGA+AGG + chr8_1:5356802-5356821 Msa1174280:CDS 45.0%
ATGGAGATGCAGCTCTTGAA+GGG + chr8_1:5356803-5356822 Msa1174280:CDS 45.0%
ACGGTGGTTAGAAAATCTGG+TGG + chr8_1:5356826-5356845 Msa1174280:CDS 45.0%
CGGTGGTTAGAAAATCTGGT+GGG + chr8_1:5356827-5356846 Msa1174280:CDS 45.0%
! GAACAAGAAAGGTGCAGCTA+AGG + chr8_1:5356849-5356868 Msa1174280:CDS 45.0%
CACACGATTCAGATTTCCAC+CGG - chr8_1:5356959-5356978 None:intergenic 45.0%
! TGAAGGGTGCGCAAATTGTT+CGG - chr8_1:5357243-5357262 None:intergenic 45.0%
ACCCTTCACATCCTTGACAT+TGG + chr8_1:5357255-5357274 Msa1174280:CDS 45.0%
CTCCAATGTCAAGGATGTGA+AGG - chr8_1:5357260-5357279 None:intergenic 45.0%
CATGAGAGACTCCAATGTCA+AGG - chr8_1:5357269-5357288 None:intergenic 45.0%
CTTGACATTGGAGTCTCTCA+TGG + chr8_1:5357267-5357286 Msa1174280:CDS 45.0%
! GCAATGGCCAACTTTTCTAG+AGG + chr8_1:5357293-5357312 Msa1174280:CDS 45.0%
! CTCAAGGCCTCTAGAAAAGT+TGG - chr8_1:5357303-5357322 None:intergenic 45.0%
! ATGGAGACCCCATTTTCAGT+AGG + chr8_1:5357402-5357421 Msa1174280:CDS 45.0%
CCAGATGGACCTACTGAAAA+TGG - chr8_1:5357414-5357433 None:intergenic 45.0%
! CCATTTTCAGTAGGTCCATC+TGG + chr8_1:5357411-5357430 Msa1174280:CDS 45.0%
ACTTTCTCTTCTGGACTCCT+TGG + chr8_1:5357438-5357457 Msa1174280:CDS 45.0%
!! GAGTTTCTGAAGGTGTTGAG+AGG + chr8_1:5357627-5357646 Msa1174280:CDS 45.0%
! GAGTGTTGTTGCAGTAGTTG+TGG + chr8_1:5357690-5357709 Msa1174280:CDS 45.0%
! AGTTGTGGCGATTTTGCCAA+CGG + chr8_1:5357705-5357724 Msa1174280:CDS 45.0%
! CACGAAGAGTGGAGTACTTA+TGG + chr8_1:5357733-5357752 Msa1174280:CDS 45.0%
! GAAGAGTGGAGTACTTATGG+AGG + chr8_1:5357736-5357755 Msa1174280:CDS 45.0%
! ACGGTTTTTGAATGCCGAAC+TGG - chr8_1:5357775-5357794 None:intergenic 45.0%
! AAGGAGAATGATGGAAGGTG+AGG + chr8_1:5357806-5357825 Msa1174280:CDS 45.0%
ACCAGCGTGAAATGAACGAA+AGG + chr8_1:5357847-5357866 Msa1174280:CDS 45.0%
TCCTTTCGTTCATTTCACGC+TGG - chr8_1:5357851-5357870 None:intergenic 45.0%
ATGAAAGAAGCAGGGTTTGC+AGG + chr8_1:5357891-5357910 Msa1174280:CDS 45.0%
TGAAAGAAGCAGGGTTTGCA+GGG + chr8_1:5357892-5357911 Msa1174280:CDS 45.0%
!! ATGGAGGTCGAGCTTTGTTA+AGG + chr8_1:5357940-5357959 Msa1174280:CDS 45.0%
GTACAAGTGTGGAACTATGG+TGG + chr8_1:5358003-5358022 Msa1174280:CDS 45.0%
AGATGCAGCTCTTGAAGGGA+CGG + chr8_1:5356807-5356826 Msa1174280:CDS 50.0%
GGGACGGTGGTTAGAAAATC+TGG + chr8_1:5356823-5356842 Msa1174280:CDS 50.0%
! AAAGGTGCAGCTAAGGCCAA+TGG + chr8_1:5356856-5356875 Msa1174280:CDS 50.0%
CGGTTATGGCTACAGCACAA+GGG - chr8_1:5356939-5356958 None:intergenic 50.0%
CCTTGTGCTGTAGCCATAAC+CGG + chr8_1:5356937-5356956 Msa1174280:CDS 50.0%
! CATGAGCTAGCCTCAACTAC+CGG + chr8_1:5357000-5357019 Msa1174280:CDS 50.0%
TCTTCGTCATCTACCCCATC+AGG + chr8_1:5357084-5357103 Msa1174280:CDS 50.0%
CTTCGTCATCTACCCCATCA+GGG + chr8_1:5357085-5357104 Msa1174280:CDS 50.0%
! AGTTCTACGAGGTTAGCCCT+TGG + chr8_1:5357160-5357179 Msa1174280:CDS 50.0%
GAGTCTCTCATGGTGTGCAA+TGG + chr8_1:5357277-5357296 Msa1174280:CDS 50.0%
ACAGTAAGGCGAACAAGAGG+AGG - chr8_1:5357345-5357364 None:intergenic 50.0%
ACGACAGTAAGGCGAACAAG+AGG - chr8_1:5357348-5357367 None:intergenic 50.0%
!! TCTGAAGGTGTTGAGAGGCA+TGG + chr8_1:5357632-5357651 Msa1174280:CDS 50.0%
! TTGAGAGGCATGGAGCCTAA+AGG + chr8_1:5357642-5357661 Msa1174280:CDS 50.0%
! TGAGAGGCATGGAGCCTAAA+GGG + chr8_1:5357643-5357662 Msa1174280:CDS 50.0%
CACTCTTCGTGAGAATCCGT+TGG - chr8_1:5357724-5357743 None:intergenic 50.0%
! CAACGGATTCTCACGAAGAG+TGG + chr8_1:5357722-5357741 Msa1174280:CDS 50.0%
GAAAGAAGCAGGGTTTGCAG+GGG + chr8_1:5357893-5357912 Msa1174280:CDS 50.0%
!! GGGTTTGCAGGGGAAGTATT+TGG + chr8_1:5357903-5357922 Msa1174280:CDS 50.0%
!! TGCAGGGGAAGTATTTGGAG+AGG + chr8_1:5357908-5357927 Msa1174280:CDS 50.0%
GGAGAGGATGCAATTGATGG+AGG + chr8_1:5357924-5357943 Msa1174280:CDS 50.0%
AGATGCAGCTCTTGAAGGGA+CGG + chr8_1:5356807-5356826 Msa1174280:CDS 50.0%
GGGACGGTGGTTAGAAAATC+TGG + chr8_1:5356823-5356842 Msa1174280:CDS 50.0%
! AAAGGTGCAGCTAAGGCCAA+TGG + chr8_1:5356856-5356875 Msa1174280:CDS 50.0%
CGGTTATGGCTACAGCACAA+GGG - chr8_1:5356939-5356958 None:intergenic 50.0%
CCTTGTGCTGTAGCCATAAC+CGG + chr8_1:5356937-5356956 Msa1174280:CDS 50.0%
! CATGAGCTAGCCTCAACTAC+CGG + chr8_1:5357000-5357019 Msa1174280:CDS 50.0%
TCTTCGTCATCTACCCCATC+AGG + chr8_1:5357084-5357103 Msa1174280:CDS 50.0%
CTTCGTCATCTACCCCATCA+GGG + chr8_1:5357085-5357104 Msa1174280:CDS 50.0%
! AGTTCTACGAGGTTAGCCCT+TGG + chr8_1:5357160-5357179 Msa1174280:CDS 50.0%
GAGTCTCTCATGGTGTGCAA+TGG + chr8_1:5357277-5357296 Msa1174280:CDS 50.0%
ACAGTAAGGCGAACAAGAGG+AGG - chr8_1:5357345-5357364 None:intergenic 50.0%
ACGACAGTAAGGCGAACAAG+AGG - chr8_1:5357348-5357367 None:intergenic 50.0%
!! TCTGAAGGTGTTGAGAGGCA+TGG + chr8_1:5357632-5357651 Msa1174280:CDS 50.0%
! TTGAGAGGCATGGAGCCTAA+AGG + chr8_1:5357642-5357661 Msa1174280:CDS 50.0%
! TGAGAGGCATGGAGCCTAAA+GGG + chr8_1:5357643-5357662 Msa1174280:CDS 50.0%
CACTCTTCGTGAGAATCCGT+TGG - chr8_1:5357724-5357743 None:intergenic 50.0%
! CAACGGATTCTCACGAAGAG+TGG + chr8_1:5357722-5357741 Msa1174280:CDS 50.0%
GAAAGAAGCAGGGTTTGCAG+GGG + chr8_1:5357893-5357912 Msa1174280:CDS 50.0%
!! GGGTTTGCAGGGGAAGTATT+TGG + chr8_1:5357903-5357922 Msa1174280:CDS 50.0%
!! TGCAGGGGAAGTATTTGGAG+AGG + chr8_1:5357908-5357927 Msa1174280:CDS 50.0%
GGAGAGGATGCAATTGATGG+AGG + chr8_1:5357924-5357943 Msa1174280:CDS 50.0%
CCGGTTATGGCTACAGCACA+AGG - chr8_1:5356940-5356959 None:intergenic 55.0%
TGTGCTGTAGCCATAACCGG+TGG + chr8_1:5356940-5356959 Msa1174280:CDS 55.0%
GTTGGCATCTCCGGTAGTTG+AGG - chr8_1:5357013-5357032 None:intergenic 55.0%
GTAAGGCGAACAAGAGGAGG+AGG - chr8_1:5357342-5357361 None:intergenic 55.0%
! GAGAGGCATGGAGCCTAAAG+GGG + chr8_1:5357644-5357663 Msa1174280:CDS 55.0%
CCGGTTATGGCTACAGCACA+AGG - chr8_1:5356940-5356959 None:intergenic 55.0%
TGTGCTGTAGCCATAACCGG+TGG + chr8_1:5356940-5356959 Msa1174280:CDS 55.0%
GTTGGCATCTCCGGTAGTTG+AGG - chr8_1:5357013-5357032 None:intergenic 55.0%
GTAAGGCGAACAAGAGGAGG+AGG - chr8_1:5357342-5357361 None:intergenic 55.0%
! GAGAGGCATGGAGCCTAAAG+GGG + chr8_1:5357644-5357663 Msa1174280:CDS 55.0%
TGCAGCTCTTGAAGGGACGG+TGG + chr8_1:5356810-5356829 Msa1174280:CDS 60.0%
CTACCGGAGATGCCAACCAC+CGG + chr8_1:5357016-5357035 Msa1174280:CDS 60.0%
AAGCCGGTGGTTGGCATCTC+CGG - chr8_1:5357022-5357041 None:intergenic 60.0%
GAAGACCATGCGCTGCAAGC+CGG - chr8_1:5357038-5357057 None:intergenic 60.0%
TCCACCAGGTCGACGACTCA+AGG - chr8_1:5357319-5357338 None:intergenic 60.0%
ACAAGAGGAGGAGGTCCACC+AGG - chr8_1:5357333-5357352 None:intergenic 60.0%
TGCAGCTCTTGAAGGGACGG+TGG + chr8_1:5356810-5356829 Msa1174280:CDS 60.0%
CTACCGGAGATGCCAACCAC+CGG + chr8_1:5357016-5357035 Msa1174280:CDS 60.0%
AAGCCGGTGGTTGGCATCTC+CGG - chr8_1:5357022-5357041 None:intergenic 60.0%
GAAGACCATGCGCTGCAAGC+CGG - chr8_1:5357038-5357057 None:intergenic 60.0%
TCCACCAGGTCGACGACTCA+AGG - chr8_1:5357319-5357338 None:intergenic 60.0%
ACAAGAGGAGGAGGTCCACC+AGG - chr8_1:5357333-5357352 None:intergenic 60.0%
ATGCGCTGCAAGCCGGTGGT+TGG - chr8_1:5357031-5357050 None:intergenic 65.0%
!! AACCACCGGCTTGCAGCGCA+TGG + chr8_1:5357030-5357049 Msa1174280:CDS 65.0%
GAGGCCTTGAGTCGTCGACC+TGG + chr8_1:5357312-5357331 Msa1174280:CDS 65.0%
GCCTTGAGTCGTCGACCTGG+TGG + chr8_1:5357315-5357334 Msa1174280:CDS 65.0%
ATGCGCTGCAAGCCGGTGGT+TGG - chr8_1:5357031-5357050 None:intergenic 65.0%
!! AACCACCGGCTTGCAGCGCA+TGG + chr8_1:5357030-5357049 Msa1174280:CDS 65.0%
GAGGCCTTGAGTCGTCGACC+TGG + chr8_1:5357312-5357331 Msa1174280:CDS 65.0%
GCCTTGAGTCGTCGACCTGG+TGG + chr8_1:5357315-5357334 Msa1174280:CDS 65.0%
GACCATGCGCTGCAAGCCGG+TGG - chr8_1:5357035-5357054 None:intergenic 70.0%
GACCATGCGCTGCAAGCCGG+TGG - chr8_1:5357035-5357054 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5356418 5358082 5356418 ID=Msa1174280;Name=Msa1174280
chr8_1 mRNA 5356418 5358082 5356418 ID=Msa1174280-mRNA-1;Parent=Msa1174280;Name=Msa1174280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|554
chr8_1 exon 5356418 5358082 5356418 ID=Msa1174280-mRNA-1:exon:1755;Parent=Msa1174280-mRNA-1
chr8_1 CDS 5356418 5358082 5356418 ID=Msa1174280-mRNA-1:cds;Parent=Msa1174280-mRNA-1
Gene Sequence

>Msa1174280

ATGACCATGGAACCAAATCCAACATCAGATCACATTCTTGACTGGCTTGAAGGTTCTGTCTCTTTCTTTCCATCATTCTTGGATGATCCATATAACAATGGTTACATCCAAGAGTATGAGATATGGAATCAGAACCAAGATATAAGTAACCAGTACCAAATTGATGCCAATACTAATTCTTCTAATGCCACAAACAGCACAACTAACATTGTTGCTGCTAGTACTACCACAAGTATAACATCCCTTGAGCCTAATAGTTCTAACAACATACCCTTTTCAGATTTGCCGAAGAAACGAAATGCCGAAGATGAATTAAGTCTCAAAAAACAGCCACAAAACCAAAAGAACAAGAGACTTAAGAGTCGTCCGATGAATGAAAGTGATAATGGAGATGCAGCTCTTGAAGGGACGGTGGTTAGAAAATCTGGTGGGAACAAGAAAGGTGCAGCTAAGGCCAATGGAAGTAACAGTAACAATGGAAACAATAAGGATGGTAGGTGGGCTGAGCAGTTGCTCAACCCTTGTGCTGTAGCCATAACCGGTGGAAATCTGAATCGTGTGCAACATCTCTTATATGTTCTACATGAGCTAGCCTCAACTACCGGAGATGCCAACCACCGGCTTGCAGCGCATGGTCTTCGAGCATTGACACACCATTTATCTTCATCTTCGTCATCTACCCCATCAGGGACTATAACTTTTGCATCTACAGAACCGCGATTCTTCCAAAAATCATTACTGAAGTTCTACGAGGTTAGCCCTTGGTTTTCCTTTCCTAGTAACATAGCAAATGCTTCCATTCTTCAAGTTCTAGCTGAAGAGCCGAACAATTTGCGCACCCTTCACATCCTTGACATTGGAGTCTCTCATGGTGTGCAATGGCCAACTTTTCTAGAGGCCTTGAGTCGTCGACCTGGTGGACCTCCTCCTCTTGTTCGCCTTACTGTCGTTAATGCCTCTTCATCCATTGAAAATGACCAAAATATGGAGACCCCATTTTCAGTAGGTCCATCTGGTGATACTTTCTCTTCTGGACTCCTTGGTTATGCTCAATCCTTAAATGTCAATCTGCAGATAAAAAAGCTTGATAATCATCCATTGCAGACATTGAATGCTAAAAGTGTTGACACATCCCCTGATGAAACCCTTATTGTCTGTGCTCAGTTCAGGTTGCATCACTTGAATCATAACAGTCCTGATGAAAGAAGTGAGTTTCTGAAGGTGTTGAGAGGCATGGAGCCTAAAGGGGTAATATTAAGTGAGAACAACATGGAGTGTTGTTGCAGTAGTTGTGGCGATTTTGCCAACGGATTCTCACGAAGAGTGGAGTACTTATGGAGGTTTTTAGATTCAACCAGTTCGGCATTCAAAAACCGTGACAGTGATGAAAGGAGAATGATGGAAGGTGAGGCTGCAAAAGCATTGACAAACCAGCGTGAAATGAACGAAAGGAGAGAAAAATGGTGTGAAAGAATGAAAGAAGCAGGGTTTGCAGGGGAAGTATTTGGAGAGGATGCAATTGATGGAGGTCGAGCTTTGTTAAGGAAGTATGATAACAATTGGGAGATGAAAGTAGAAGAAAATAGTACAAGTGTGGAACTATGGTGGAAGAGCCAACCTGTTTCTTTCTGTTCTTTGTGGAAACTGGAGAAACAACCAGAGTAG

Protein sequence

>Msa1174280

MTMEPNPTSDHILDWLEGSVSFFPSFLDDPYNNGYIQEYEIWNQNQDISNQYQIDANTNSSNATNSTTNIVAASTTTSITSLEPNSSNNIPFSDLPKKRNAEDELSLKKQPQNQKNKRLKSRPMNESDNGDAALEGTVVRKSGGNKKGAAKANGSNSNNGNNKDGRWAEQLLNPCAVAITGGNLNRVQHLLYVLHELASTTGDANHRLAAHGLRALTHHLSSSSSSTPSGTITFASTEPRFFQKSLLKFYEVSPWFSFPSNIANASILQVLAEEPNNLRTLHILDIGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVNASSSIENDQNMETPFSVGPSGDTFSSGLLGYAQSLNVNLQIKKLDNHPLQTLNAKSVDTSPDETLIVCAQFRLHHLNHNSPDERSEFLKVLRGMEPKGVILSENNMECCCSSCGDFANGFSRRVEYLWRFLDSTSSAFKNRDSDERRMMEGEAAKALTNQREMNERREKWCERMKEAGFAGEVFGEDAIDGGRALLRKYDNNWEMKVEENSTSVELWWKSQPVSFCSLWKLEKQPE*