AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0320170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0320170 MtrunA17_Chr2g0295081 99.363 157 1 0 1 157 1 157 1.88e-112 315
Msa0320170 MtrunA17_Chr2g0295021 60.510 157 62 0 1 157 1 157 2.87e-63 191
Msa0320170 MtrunA17_Chr2g0295001 60.510 157 62 0 1 157 1 157 2.87e-63 191
Msa0320170 MtrunA17_Chr2g0295064 58.599 157 65 0 1 157 68 224 4.13e-61 188
Msa0320170 MtrunA17_Chr2g0295041 57.962 157 66 0 1 157 1 157 1.22e-59 182
Msa0320170 MtrunA17_Chr2g0295051 56.688 157 68 0 1 157 1 157 3.12e-58 178
Msa0320170 MtrunA17_Chr4g0067951 55.414 157 70 0 1 157 1 157 5.26e-56 172
Msa0320170 MtrunA17_Chr6g0462311 54.140 157 72 0 1 157 1 157 1.38e-54 169
Msa0320170 MtrunA17_Chr2g0295141 48.408 157 81 0 1 157 1 157 6.60e-50 157
Msa0320170 MtrunA17_Chr2g0295091 47.771 157 82 0 1 157 1 157 2.42e-48 153
Msa0320170 MtrunA17_Chr2g0295104 47.771 157 82 0 1 157 1 157 5.20e-48 152
Msa0320170 MtrunA17_Chr2g0295124 49.315 146 74 0 12 157 12 157 2.62e-47 150
Msa0320170 MtrunA17_Chr6g0462291 53.957 139 64 0 1 139 1 139 7.92e-46 147
Msa0320170 MtrunA17_Chr2g0295211 36.184 152 94 2 5 155 7 156 2.22e-30 107
Msa0320170 MtrunA17_Chr4g0067841 32.692 156 104 1 1 155 1 156 1.39e-28 103
Msa0320170 MtrunA17_Chr4g0067921 39.752 161 90 5 1 157 1 158 2.24e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 81 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTATATAATGTATTATT+TGG 0.170616 2_4:-20456372 None:intergenic
GTGTACAACTTTAGCATTAT+TGG 0.240901 2_4:+20457232 Msa0320170:CDS
TTATTATTGGGAATAGTATT+TGG 0.281380 2_4:-20456248 None:intergenic
AATTAATAACAACCAGATTA+AGG 0.281625 2_4:+20457512 Msa0320170:three_prime_UTR
ATAAGATAAGATGAAATATT+TGG 0.289744 2_4:+20457681 Msa0320170:three_prime_UTR
TGGATCACTTCCACAAGCTT+TGG 0.317240 2_4:-20456596 None:intergenic
TTAATAAGAACTTGGCTATA+TGG 0.336303 2_4:+20457485 Msa0320170:three_prime_UTR
ATTAAACACATTCAGTAATC+AGG 0.345127 2_4:-20457457 None:intergenic
GGATCACTTCCACAAGCTTT+GGG 0.357297 2_4:-20456595 None:intergenic
CTTACAACCCAACCTTAATC+TGG 0.358489 2_4:-20457524 None:intergenic
CATTTGGTCCTTCCACCAAT+TGG 0.365233 2_4:-20457300 None:intergenic
TAACAATTGGAGGAATTTGC+AGG 0.381600 2_4:-20456214 None:intergenic
TATATAATGTATTATTTGGT+TGG 0.388756 2_4:-20456368 None:intergenic
ATGGCTTTGAAGAGCCTAAC+AGG 0.389381 2_4:-20456548 None:intergenic
CTGCTGCTGTTCCTCCTGTT+AGG 0.389483 2_4:+20456534 Msa0320170:CDS
GACCAAATGGTGGGTCCATT+AGG 0.393696 2_4:+20457314 Msa0320170:CDS
CTTCAGTGAACTCAATACTT+TGG 0.401346 2_4:-20456616 None:intergenic
CATTGAGAAATTCTTCATCA+TGG 0.402402 2_4:+20456484 Msa0320170:exon
ATCAACATGTACATTCCTAA+TGG 0.402440 2_4:-20457329 None:intergenic
TTTAGCATTATTGGAGGCAC+TGG 0.406147 2_4:+20457241 Msa0320170:CDS
ACTTAAATTATAATCACCTT+TGG 0.409104 2_4:-20457359 None:intergenic
GCTTGTTGAAGGGTACCTTT+TGG 0.410083 2_4:+20457429 Msa0320170:CDS
ATTAAGGTTGGGTTGTAAGA+TGG 0.410527 2_4:+20457528 Msa0320170:three_prime_UTR
TTCCTAATGGACCCACCATT+TGG 0.414563 2_4:-20457316 None:intergenic
CACTCTGTGTAGCACATACT+TGG 0.421047 2_4:-20457185 None:intergenic
TAATTTCACCTAACCCCATA+TGG 0.422046 2_4:+20456312 Msa0320170:five_prime_UTR
CATTCTCATAACTCATACTT+AGG 0.431391 2_4:-20457554 None:intergenic
CTTCCACAAGCTTTGGGAAG+AGG 0.431558 2_4:-20456589 None:intergenic
AGTGAGGAGGAGTTGAAAGC+TGG 0.432811 2_4:+20457379 Msa0320170:CDS
TTGATTATGAGAAGATGTTA+AGG 0.436047 2_4:-20456441 None:intergenic
GGTGATAAGAAAATAACAAT+TGG 0.436095 2_4:-20456227 None:intergenic
GGACTTGTAAAGCTTGTTGA+AGG 0.441945 2_4:+20457418 Msa0320170:CDS
AATAACAACCAGATTAAGGT+TGG 0.443346 2_4:+20457516 Msa0320170:three_prime_UTR
GCTGGTAAAGCAAAGGTTGA+AGG 0.449190 2_4:+20457397 Msa0320170:CDS
TACTAGTACTACCACCATAT+GGG 0.457407 2_4:-20456326 None:intergenic
AAGAAGCTCACCACAGTTGA+AGG 0.458485 2_4:+20456662 Msa0320170:CDS
TTAAGGTTGGGTTGTAAGAT+GGG 0.462460 2_4:+20457529 Msa0320170:three_prime_UTR
ACTGAAGGAACTGGTGGTGC+TGG 0.463110 2_4:+20456632 Msa0320170:CDS
AGTAATCAGGATTTGCCAAA+AGG 0.469472 2_4:-20457444 None:intergenic
GTACTAGTACTACCACCATA+TGG 0.472406 2_4:-20456327 None:intergenic
CTAACAGGAGGAACAGCAGC+AGG 0.474433 2_4:-20456533 None:intergenic
ATTGAGAAATTCTTCATCAT+GGG 0.480342 2_4:+20456485 Msa0320170:exon
AATTAGAGTTAATAAGAACT+TGG 0.482146 2_4:+20457477 Msa0320170:three_prime_UTR
CCCTTCCAACCTTTAGTCCA+TGG 0.494019 2_4:-20457720 None:intergenic
ATAACAACCAGATTAAGGTT+GGG 0.499101 2_4:+20457517 Msa0320170:three_prime_UTR
CATTATTGGAGGCACTGGAT+TGG 0.499873 2_4:+20457246 Msa0320170:CDS
ATTGAGTTCACTGAAGGAAC+TGG 0.500969 2_4:+20456623 Msa0320170:CDS
AATTAAGCTCAGTATGTGTT+TGG 0.504243 2_4:-20456294 None:intergenic
AGTCTCATTCAAGAGCCAAT+TGG 0.510948 2_4:+20457285 Msa0320170:CDS
TAACCTCTTCCCAAAGCTTG+TGG 0.518650 2_4:+20456586 Msa0320170:CDS
TACTACCACCATATGGGGTT+AGG 0.523500 2_4:-20456320 None:intergenic
TAAGCTCAGTATGTGTTTGG+TGG 0.527117 2_4:-20456291 None:intergenic
CTCATTCAAGAGCCAATTGG+TGG 0.533109 2_4:+20457288 Msa0320170:CDS
GATAAGAAAATAACAATTGG+AGG 0.535044 2_4:-20456224 None:intergenic
TACAACTTTAGCATTATTGG+AGG 0.546529 2_4:+20457235 Msa0320170:CDS
TGATTATAATTTAAGTGAGG+AGG 0.547716 2_4:+20457366 Msa0320170:CDS
CAATTGGTGGAAGGACCAAA+TGG 0.550601 2_4:+20457301 Msa0320170:CDS
CTGAGTGAGCCATGGACTAA+AGG 0.557309 2_4:+20457711 Msa0320170:three_prime_UTR
GTGAGCCATGGACTAAAGGT+TGG 0.560802 2_4:+20457715 Msa0320170:three_prime_UTR
AACAGGAGGAACAGCAGCAG+GGG 0.564864 2_4:-20456531 None:intergenic
CATCATGGGTGTACAAACTC+AGG 0.570571 2_4:+20456499 Msa0320170:exon
CAAAGTATTGAGTTCACTGA+AGG 0.574960 2_4:+20456617 Msa0320170:CDS
GCCATGGACTAAAGGTTGGA+AGG 0.576891 2_4:+20457719 Msa0320170:three_prime_UTR
GTATTTGACTGAGTGAGCCA+TGG 0.580257 2_4:+20457703 Msa0320170:three_prime_UTR
CCATGGACTAAAGGTTGGAA+GGG 0.581214 2_4:+20457720 Msa0320170:three_prime_UTR
TAATTACTGACCTTCAACTG+TGG 0.582513 2_4:-20456672 None:intergenic
TAAGGTTGGGTTGTAAGATG+GGG 0.599400 2_4:+20457530 Msa0320170:three_prime_UTR
TTCAAGAGCCAATTGGTGGA+AGG 0.610648 2_4:+20457292 Msa0320170:CDS
TAACAGGAGGAACAGCAGCA+GGG 0.612336 2_4:-20456532 None:intergenic
TTGGTGGAAGGACCAAATGG+TGG 0.613674 2_4:+20457304 Msa0320170:CDS
GACTTGTAAAGCTTGTTGAA+GGG 0.631158 2_4:+20457419 Msa0320170:CDS
TGGTGGAAGGACCAAATGGT+GGG 0.640622 2_4:+20457305 Msa0320170:CDS
GTTGAAAGCTGGTAAAGCAA+AGG 0.651458 2_4:+20457390 Msa0320170:CDS
TTTCACCTAACCCCATATGG+TGG 0.653400 2_4:+20456315 Msa0320170:five_prime_UTR
AAGGTTGGGTTGTAAGATGG+GGG 0.654059 2_4:+20457531 Msa0320170:three_prime_UTR
CAAGTATGTGCTACACAGAG+TGG 0.654201 2_4:+20457186 Msa0320170:CDS
AGGTGATTATAATTTAAGTG+AGG 0.654716 2_4:+20457363 Msa0320170:CDS
ACTAGTACTACCACCATATG+GGG 0.664820 2_4:-20456325 None:intergenic
GTTATGAAACTCTAATGACA+TGG 0.696174 2_4:-20456567 None:intergenic
GAGTTCACTGAAGGAACTGG+TGG 0.720921 2_4:+20456626 Msa0320170:CDS
GCTTTGAAGAGCCTAACAGG+AGG 0.746272 2_4:-20456545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATAATGATCA+TGG - chr2_4:20457005-20457024 None:intergenic 10.0%
!! AGTTAGTTAAATTAAATTAA+TGG + chr2_4:20457122-20457141 Msa0320170:intron 10.0%
!! TCTTATATTAAAAAAAAAAC+TGG - chr2_4:20457667-20457686 None:intergenic 10.0%
!! AAAAAAAAAAATAATGATCA+TGG - chr2_4:20457005-20457024 None:intergenic 10.0%
!! AGTTAGTTAAATTAAATTAA+TGG + chr2_4:20457122-20457141 Msa0320170:intron 10.0%
!! TCTTATATTAAAAAAAAAAC+TGG - chr2_4:20457667-20457686 None:intergenic 10.0%
!! TATATAATGTATTATTTGGT+TGG - chr2_4:20456371-20456390 None:intergenic 15.0%
!!! ATTTTCTCTTATTTTAATTG+AGG - chr2_4:20456781-20456800 None:intergenic 15.0%
!!! TTTTTATAGAAAAATGTTAG+TGG + chr2_4:20457022-20457041 Msa0320170:intron 15.0%
!! ATATTAAAAAAAAAACTGGA+AGG - chr2_4:20457663-20457682 None:intergenic 15.0%
!! ATAAGATAAGATGAAATATT+TGG + chr2_4:20457681-20457700 Msa0320170:three_prime_UTR 15.0%
!! TATATAATGTATTATTTGGT+TGG - chr2_4:20456371-20456390 None:intergenic 15.0%
!!! ATTTTCTCTTATTTTAATTG+AGG - chr2_4:20456781-20456800 None:intergenic 15.0%
!!! TTTTTATAGAAAAATGTTAG+TGG + chr2_4:20457022-20457041 Msa0320170:intron 15.0%
!! ATATTAAAAAAAAAACTGGA+AGG - chr2_4:20457663-20457682 None:intergenic 15.0%
!! ATAAGATAAGATGAAATATT+TGG + chr2_4:20457681-20457700 Msa0320170:three_prime_UTR 15.0%
!! TTATTATTGGGAATAGTATT+TGG - chr2_4:20456251-20456270 None:intergenic 20.0%
!!! TTTTTGTTGTGGTTATTATT+GGG - chr2_4:20456263-20456282 None:intergenic 20.0%
!!! TTTTTTGTTGTGGTTATTAT+TGG - chr2_4:20456264-20456283 None:intergenic 20.0%
!!! TATTTTAATTCCATGACTTT+AGG + chr2_4:20456702-20456721 Msa0320170:intron 20.0%
!! TGGTTAATTCGTTAAATTAA+AGG + chr2_4:20457042-20457061 Msa0320170:intron 20.0%
!! TTCGTTAAATTAAAGGAATA+TGG + chr2_4:20457049-20457068 Msa0320170:intron 20.0%
!! ACTTAAATTATAATCACCTT+TGG - chr2_4:20457362-20457381 None:intergenic 20.0%
!! AATTAGAGTTAATAAGAACT+TGG + chr2_4:20457477-20457496 Msa0320170:three_prime_UTR 20.0%
!! AATTAATAACAACCAGATTA+AGG + chr2_4:20457512-20457531 Msa0320170:three_prime_UTR 20.0%
!! TTATTATTGGGAATAGTATT+TGG - chr2_4:20456251-20456270 None:intergenic 20.0%
!!! TTTTTGTTGTGGTTATTATT+GGG - chr2_4:20456263-20456282 None:intergenic 20.0%
!!! TTTTTTGTTGTGGTTATTAT+TGG - chr2_4:20456264-20456283 None:intergenic 20.0%
!!! TATTTTAATTCCATGACTTT+AGG + chr2_4:20456702-20456721 Msa0320170:intron 20.0%
!! TGGTTAATTCGTTAAATTAA+AGG + chr2_4:20457042-20457061 Msa0320170:intron 20.0%
!! TTCGTTAAATTAAAGGAATA+TGG + chr2_4:20457049-20457068 Msa0320170:intron 20.0%
!! ACTTAAATTATAATCACCTT+TGG - chr2_4:20457362-20457381 None:intergenic 20.0%
!! AATTAGAGTTAATAAGAACT+TGG + chr2_4:20457477-20457496 Msa0320170:three_prime_UTR 20.0%
!! AATTAATAACAACCAGATTA+AGG + chr2_4:20457512-20457531 Msa0320170:three_prime_UTR 20.0%
! GATAAGAAAATAACAATTGG+AGG - chr2_4:20456227-20456246 None:intergenic 25.0%
! GGTGATAAGAAAATAACAAT+TGG - chr2_4:20456230-20456249 None:intergenic 25.0%
! TTGATTATGAGAAGATGTTA+AGG - chr2_4:20456444-20456463 None:intergenic 25.0%
! ATTGAGAAATTCTTCATCAT+GGG + chr2_4:20456485-20456504 Msa0320170:exon 25.0%
! ATATAAGTAGGTGCAAATTA+TGG - chr2_4:20456876-20456895 None:intergenic 25.0%
! AAGTTTACAACGATATAAGT+AGG - chr2_4:20456888-20456907 None:intergenic 25.0%
!!! CATGTTGATTATTTTACCAA+AGG + chr2_4:20457343-20457362 Msa0320170:CDS 25.0%
! AGGTGATTATAATTTAAGTG+AGG + chr2_4:20457363-20457382 Msa0320170:CDS 25.0%
! TGATTATAATTTAAGTGAGG+AGG + chr2_4:20457366-20457385 Msa0320170:CDS 25.0%
! ATTAAACACATTCAGTAATC+AGG - chr2_4:20457460-20457479 None:intergenic 25.0%
! TTAATAAGAACTTGGCTATA+TGG + chr2_4:20457485-20457504 Msa0320170:three_prime_UTR 25.0%
! GATAAGAAAATAACAATTGG+AGG - chr2_4:20456227-20456246 None:intergenic 25.0%
! GGTGATAAGAAAATAACAAT+TGG - chr2_4:20456230-20456249 None:intergenic 25.0%
! TTGATTATGAGAAGATGTTA+AGG - chr2_4:20456444-20456463 None:intergenic 25.0%
! ATTGAGAAATTCTTCATCAT+GGG + chr2_4:20456485-20456504 Msa0320170:exon 25.0%
! ATATAAGTAGGTGCAAATTA+TGG - chr2_4:20456876-20456895 None:intergenic 25.0%
! AAGTTTACAACGATATAAGT+AGG - chr2_4:20456888-20456907 None:intergenic 25.0%
!!! CATGTTGATTATTTTACCAA+AGG + chr2_4:20457343-20457362 Msa0320170:CDS 25.0%
! AGGTGATTATAATTTAAGTG+AGG + chr2_4:20457363-20457382 Msa0320170:CDS 25.0%
! TGATTATAATTTAAGTGAGG+AGG + chr2_4:20457366-20457385 Msa0320170:CDS 25.0%
! ATTAAACACATTCAGTAATC+AGG - chr2_4:20457460-20457479 None:intergenic 25.0%
! TTAATAAGAACTTGGCTATA+TGG + chr2_4:20457485-20457504 Msa0320170:three_prime_UTR 25.0%
!!! TGGAGTCTTTTTTTTTGTTG+TGG - chr2_4:20456274-20456293 None:intergenic 30.0%
AATTAAGCTCAGTATGTGTT+TGG - chr2_4:20456297-20456316 None:intergenic 30.0%
CATTGAGAAATTCTTCATCA+TGG + chr2_4:20456484-20456503 Msa0320170:exon 30.0%
GTTATGAAACTCTAATGACA+TGG - chr2_4:20456570-20456589 None:intergenic 30.0%
! GTCTTACTTGTGATGATTTT+TGG - chr2_4:20456948-20456967 None:intergenic 30.0%
TGAGTGAATTTGATGAATAC+AGG + chr2_4:20457154-20457173 Msa0320170:intron 30.0%
GTGTACAACTTTAGCATTAT+TGG + chr2_4:20457232-20457251 Msa0320170:CDS 30.0%
TACAACTTTAGCATTATTGG+AGG + chr2_4:20457235-20457254 Msa0320170:CDS 30.0%
ATCAACATGTACATTCCTAA+TGG - chr2_4:20457332-20457351 None:intergenic 30.0%
AATAACAACCAGATTAAGGT+TGG + chr2_4:20457516-20457535 Msa0320170:three_prime_UTR 30.0%
ATAACAACCAGATTAAGGTT+GGG + chr2_4:20457517-20457536 Msa0320170:three_prime_UTR 30.0%
CATTCTCATAACTCATACTT+AGG - chr2_4:20457557-20457576 None:intergenic 30.0%
!!! TGGAGTCTTTTTTTTTGTTG+TGG - chr2_4:20456274-20456293 None:intergenic 30.0%
AATTAAGCTCAGTATGTGTT+TGG - chr2_4:20456297-20456316 None:intergenic 30.0%
CATTGAGAAATTCTTCATCA+TGG + chr2_4:20456484-20456503 Msa0320170:exon 30.0%
GTTATGAAACTCTAATGACA+TGG - chr2_4:20456570-20456589 None:intergenic 30.0%
! GTCTTACTTGTGATGATTTT+TGG - chr2_4:20456948-20456967 None:intergenic 30.0%
TGAGTGAATTTGATGAATAC+AGG + chr2_4:20457154-20457173 Msa0320170:intron 30.0%
GTGTACAACTTTAGCATTAT+TGG + chr2_4:20457232-20457251 Msa0320170:CDS 30.0%
TACAACTTTAGCATTATTGG+AGG + chr2_4:20457235-20457254 Msa0320170:CDS 30.0%
ATCAACATGTACATTCCTAA+TGG - chr2_4:20457332-20457351 None:intergenic 30.0%
AATAACAACCAGATTAAGGT+TGG + chr2_4:20457516-20457535 Msa0320170:three_prime_UTR 30.0%
ATAACAACCAGATTAAGGTT+GGG + chr2_4:20457517-20457536 Msa0320170:three_prime_UTR 30.0%
CATTCTCATAACTCATACTT+AGG - chr2_4:20457557-20457576 None:intergenic 30.0%
TAATTTCACCTAACCCCATA+TGG + chr2_4:20456312-20456331 Msa0320170:five_prime_UTR 35.0%
TACTAGTACTACCACCATAT+GGG - chr2_4:20456329-20456348 None:intergenic 35.0%
CTTCAGTGAACTCAATACTT+TGG - chr2_4:20456619-20456638 None:intergenic 35.0%
!! CAAAGTATTGAGTTCACTGA+AGG + chr2_4:20456617-20456636 Msa0320170:CDS 35.0%
TAATTACTGACCTTCAACTG+TGG - chr2_4:20456675-20456694 None:intergenic 35.0%
AGACTCAAATCCTAAAGTCA+TGG - chr2_4:20456715-20456734 None:intergenic 35.0%
! TCATTTTACAGTTGTCTCAG+AGG + chr2_4:20456828-20456847 Msa0320170:intron 35.0%
GTGAATTTGATGAATACAGG+TGG + chr2_4:20457157-20457176 Msa0320170:intron 35.0%
!! GACTTGTAAAGCTTGTTGAA+GGG + chr2_4:20457419-20457438 Msa0320170:CDS 35.0%
AGTAATCAGGATTTGCCAAA+AGG - chr2_4:20457447-20457466 None:intergenic 35.0%
! ATTAAGGTTGGGTTGTAAGA+TGG + chr2_4:20457528-20457547 Msa0320170:three_prime_UTR 35.0%
! TTAAGGTTGGGTTGTAAGAT+GGG + chr2_4:20457529-20457548 Msa0320170:three_prime_UTR 35.0%
TAATTTCACCTAACCCCATA+TGG + chr2_4:20456312-20456331 Msa0320170:five_prime_UTR 35.0%
TACTAGTACTACCACCATAT+GGG - chr2_4:20456329-20456348 None:intergenic 35.0%
CTTCAGTGAACTCAATACTT+TGG - chr2_4:20456619-20456638 None:intergenic 35.0%
!! CAAAGTATTGAGTTCACTGA+AGG + chr2_4:20456617-20456636 Msa0320170:CDS 35.0%
TAATTACTGACCTTCAACTG+TGG - chr2_4:20456675-20456694 None:intergenic 35.0%
AGACTCAAATCCTAAAGTCA+TGG - chr2_4:20456715-20456734 None:intergenic 35.0%
! TCATTTTACAGTTGTCTCAG+AGG + chr2_4:20456828-20456847 Msa0320170:intron 35.0%
GTGAATTTGATGAATACAGG+TGG + chr2_4:20457157-20457176 Msa0320170:intron 35.0%
!! GACTTGTAAAGCTTGTTGAA+GGG + chr2_4:20457419-20457438 Msa0320170:CDS 35.0%
AGTAATCAGGATTTGCCAAA+AGG - chr2_4:20457447-20457466 None:intergenic 35.0%
! ATTAAGGTTGGGTTGTAAGA+TGG + chr2_4:20457528-20457547 Msa0320170:three_prime_UTR 35.0%
! TTAAGGTTGGGTTGTAAGAT+GGG + chr2_4:20457529-20457548 Msa0320170:three_prime_UTR 35.0%
TAAGCTCAGTATGTGTTTGG+TGG - chr2_4:20456294-20456313 None:intergenic 40.0%
ACTAGTACTACCACCATATG+GGG - chr2_4:20456328-20456347 None:intergenic 40.0%
GTACTAGTACTACCACCATA+TGG - chr2_4:20456330-20456349 None:intergenic 40.0%
ATTGAGTTCACTGAAGGAAC+TGG + chr2_4:20456623-20456642 Msa0320170:CDS 40.0%
CTTTGTTAGAGTGACAAGTG+AGG + chr2_4:20456733-20456752 Msa0320170:intron 40.0%
! TTTAGCATTATTGGAGGCAC+TGG + chr2_4:20457241-20457260 Msa0320170:CDS 40.0%
AGTCTCATTCAAGAGCCAAT+TGG + chr2_4:20457285-20457304 Msa0320170:CDS 40.0%
GTTGAAAGCTGGTAAAGCAA+AGG + chr2_4:20457390-20457409 Msa0320170:CDS 40.0%
!! GGACTTGTAAAGCTTGTTGA+AGG + chr2_4:20457418-20457437 Msa0320170:CDS 40.0%
CTTACAACCCAACCTTAATC+TGG - chr2_4:20457527-20457546 None:intergenic 40.0%
! TAAGGTTGGGTTGTAAGATG+GGG + chr2_4:20457530-20457549 Msa0320170:three_prime_UTR 40.0%
TAAGCTCAGTATGTGTTTGG+TGG - chr2_4:20456294-20456313 None:intergenic 40.0%
ACTAGTACTACCACCATATG+GGG - chr2_4:20456328-20456347 None:intergenic 40.0%
GTACTAGTACTACCACCATA+TGG - chr2_4:20456330-20456349 None:intergenic 40.0%
ATTGAGTTCACTGAAGGAAC+TGG + chr2_4:20456623-20456642 Msa0320170:CDS 40.0%
CTTTGTTAGAGTGACAAGTG+AGG + chr2_4:20456733-20456752 Msa0320170:intron 40.0%
! TTTAGCATTATTGGAGGCAC+TGG + chr2_4:20457241-20457260 Msa0320170:CDS 40.0%
AGTCTCATTCAAGAGCCAAT+TGG + chr2_4:20457285-20457304 Msa0320170:CDS 40.0%
GTTGAAAGCTGGTAAAGCAA+AGG + chr2_4:20457390-20457409 Msa0320170:CDS 40.0%
!! GGACTTGTAAAGCTTGTTGA+AGG + chr2_4:20457418-20457437 Msa0320170:CDS 40.0%
CTTACAACCCAACCTTAATC+TGG - chr2_4:20457527-20457546 None:intergenic 40.0%
! TAAGGTTGGGTTGTAAGATG+GGG + chr2_4:20457530-20457549 Msa0320170:three_prime_UTR 40.0%
TTTCACCTAACCCCATATGG+TGG + chr2_4:20456315-20456334 Msa0320170:five_prime_UTR 45.0%
TACTACCACCATATGGGGTT+AGG - chr2_4:20456323-20456342 None:intergenic 45.0%
CATCATGGGTGTACAAACTC+AGG + chr2_4:20456499-20456518 Msa0320170:exon 45.0%
!! ATGGCTTTGAAGAGCCTAAC+AGG - chr2_4:20456551-20456570 None:intergenic 45.0%
TAACCTCTTCCCAAAGCTTG+TGG + chr2_4:20456586-20456605 Msa0320170:CDS 45.0%
GGATCACTTCCACAAGCTTT+GGG - chr2_4:20456598-20456617 None:intergenic 45.0%
TGGATCACTTCCACAAGCTT+TGG - chr2_4:20456599-20456618 None:intergenic 45.0%
AAGAAGCTCACCACAGTTGA+AGG + chr2_4:20456662-20456681 Msa0320170:CDS 45.0%
CACTCTGTGTAGCACATACT+TGG - chr2_4:20457188-20457207 None:intergenic 45.0%
CAAGTATGTGCTACACAGAG+TGG + chr2_4:20457186-20457205 Msa0320170:CDS 45.0%
!! CATTATTGGAGGCACTGGAT+TGG + chr2_4:20457246-20457265 Msa0320170:CDS 45.0%
CTCATTCAAGAGCCAATTGG+TGG + chr2_4:20457288-20457307 Msa0320170:CDS 45.0%
TTCAAGAGCCAATTGGTGGA+AGG + chr2_4:20457292-20457311 Msa0320170:CDS 45.0%
CATTTGGTCCTTCCACCAAT+TGG - chr2_4:20457303-20457322 None:intergenic 45.0%
CAATTGGTGGAAGGACCAAA+TGG + chr2_4:20457301-20457320 Msa0320170:CDS 45.0%
! TTCCTAATGGACCCACCATT+TGG - chr2_4:20457319-20457338 None:intergenic 45.0%
GCTGGTAAAGCAAAGGTTGA+AGG + chr2_4:20457397-20457416 Msa0320170:CDS 45.0%
!!! GCTTGTTGAAGGGTACCTTT+TGG + chr2_4:20457429-20457448 Msa0320170:CDS 45.0%
! AAGGTTGGGTTGTAAGATGG+GGG + chr2_4:20457531-20457550 Msa0320170:three_prime_UTR 45.0%
GTATTTGACTGAGTGAGCCA+TGG + chr2_4:20457703-20457722 Msa0320170:three_prime_UTR 45.0%
! CCATGGACTAAAGGTTGGAA+GGG + chr2_4:20457720-20457739 Msa0320170:three_prime_UTR 45.0%
TTTCACCTAACCCCATATGG+TGG + chr2_4:20456315-20456334 Msa0320170:five_prime_UTR 45.0%
TACTACCACCATATGGGGTT+AGG - chr2_4:20456323-20456342 None:intergenic 45.0%
CATCATGGGTGTACAAACTC+AGG + chr2_4:20456499-20456518 Msa0320170:exon 45.0%
!! ATGGCTTTGAAGAGCCTAAC+AGG - chr2_4:20456551-20456570 None:intergenic 45.0%
TAACCTCTTCCCAAAGCTTG+TGG + chr2_4:20456586-20456605 Msa0320170:CDS 45.0%
GGATCACTTCCACAAGCTTT+GGG - chr2_4:20456598-20456617 None:intergenic 45.0%
TGGATCACTTCCACAAGCTT+TGG - chr2_4:20456599-20456618 None:intergenic 45.0%
AAGAAGCTCACCACAGTTGA+AGG + chr2_4:20456662-20456681 Msa0320170:CDS 45.0%
CACTCTGTGTAGCACATACT+TGG - chr2_4:20457188-20457207 None:intergenic 45.0%
CAAGTATGTGCTACACAGAG+TGG + chr2_4:20457186-20457205 Msa0320170:CDS 45.0%
!! CATTATTGGAGGCACTGGAT+TGG + chr2_4:20457246-20457265 Msa0320170:CDS 45.0%
CTCATTCAAGAGCCAATTGG+TGG + chr2_4:20457288-20457307 Msa0320170:CDS 45.0%
TTCAAGAGCCAATTGGTGGA+AGG + chr2_4:20457292-20457311 Msa0320170:CDS 45.0%
CATTTGGTCCTTCCACCAAT+TGG - chr2_4:20457303-20457322 None:intergenic 45.0%
CAATTGGTGGAAGGACCAAA+TGG + chr2_4:20457301-20457320 Msa0320170:CDS 45.0%
! TTCCTAATGGACCCACCATT+TGG - chr2_4:20457319-20457338 None:intergenic 45.0%
GCTGGTAAAGCAAAGGTTGA+AGG + chr2_4:20457397-20457416 Msa0320170:CDS 45.0%
!!! GCTTGTTGAAGGGTACCTTT+TGG + chr2_4:20457429-20457448 Msa0320170:CDS 45.0%
! AAGGTTGGGTTGTAAGATGG+GGG + chr2_4:20457531-20457550 Msa0320170:three_prime_UTR 45.0%
GTATTTGACTGAGTGAGCCA+TGG + chr2_4:20457703-20457722 Msa0320170:three_prime_UTR 45.0%
! CCATGGACTAAAGGTTGGAA+GGG + chr2_4:20457720-20457739 Msa0320170:three_prime_UTR 45.0%
!! TTATTATATAATGTATTATT+TGG - chr2_4:20456375-20456394 None:intergenic 5.0%
!! TTATTATATAATGTATTATT+TGG - chr2_4:20456375-20456394 None:intergenic 5.0%
TAACAGGAGGAACAGCAGCA+GGG - chr2_4:20456535-20456554 None:intergenic 50.0%
!! GCTTTGAAGAGCCTAACAGG+AGG - chr2_4:20456548-20456567 None:intergenic 50.0%
!! CTTCCACAAGCTTTGGGAAG+AGG - chr2_4:20456592-20456611 None:intergenic 50.0%
GAGTTCACTGAAGGAACTGG+TGG + chr2_4:20456626-20456645 Msa0320170:CDS 50.0%
TTGGTGGAAGGACCAAATGG+TGG + chr2_4:20457304-20457323 Msa0320170:CDS 50.0%
TGGTGGAAGGACCAAATGGT+GGG + chr2_4:20457305-20457324 Msa0320170:CDS 50.0%
!! GACCAAATGGTGGGTCCATT+AGG + chr2_4:20457314-20457333 Msa0320170:CDS 50.0%
AGTGAGGAGGAGTTGAAAGC+TGG + chr2_4:20457379-20457398 Msa0320170:CDS 50.0%
! CTGAGTGAGCCATGGACTAA+AGG + chr2_4:20457711-20457730 Msa0320170:three_prime_UTR 50.0%
! GTGAGCCATGGACTAAAGGT+TGG + chr2_4:20457715-20457734 Msa0320170:three_prime_UTR 50.0%
! GCCATGGACTAAAGGTTGGA+AGG + chr2_4:20457719-20457738 Msa0320170:three_prime_UTR 50.0%
CCCTTCCAACCTTTAGTCCA+TGG - chr2_4:20457723-20457742 None:intergenic 50.0%
TAACAGGAGGAACAGCAGCA+GGG - chr2_4:20456535-20456554 None:intergenic 50.0%
!! GCTTTGAAGAGCCTAACAGG+AGG - chr2_4:20456548-20456567 None:intergenic 50.0%
!! CTTCCACAAGCTTTGGGAAG+AGG - chr2_4:20456592-20456611 None:intergenic 50.0%
GAGTTCACTGAAGGAACTGG+TGG + chr2_4:20456626-20456645 Msa0320170:CDS 50.0%
TTGGTGGAAGGACCAAATGG+TGG + chr2_4:20457304-20457323 Msa0320170:CDS 50.0%
TGGTGGAAGGACCAAATGGT+GGG + chr2_4:20457305-20457324 Msa0320170:CDS 50.0%
!! GACCAAATGGTGGGTCCATT+AGG + chr2_4:20457314-20457333 Msa0320170:CDS 50.0%
AGTGAGGAGGAGTTGAAAGC+TGG + chr2_4:20457379-20457398 Msa0320170:CDS 50.0%
! CTGAGTGAGCCATGGACTAA+AGG + chr2_4:20457711-20457730 Msa0320170:three_prime_UTR 50.0%
! GTGAGCCATGGACTAAAGGT+TGG + chr2_4:20457715-20457734 Msa0320170:three_prime_UTR 50.0%
! GCCATGGACTAAAGGTTGGA+AGG + chr2_4:20457719-20457738 Msa0320170:three_prime_UTR 50.0%
CCCTTCCAACCTTTAGTCCA+TGG - chr2_4:20457723-20457742 None:intergenic 50.0%
AACAGGAGGAACAGCAGCAG+GGG - chr2_4:20456534-20456553 None:intergenic 55.0%
CTAACAGGAGGAACAGCAGC+AGG - chr2_4:20456536-20456555 None:intergenic 55.0%
CTGCTGCTGTTCCTCCTGTT+AGG + chr2_4:20456534-20456553 Msa0320170:CDS 55.0%
! ACTGAAGGAACTGGTGGTGC+TGG + chr2_4:20456632-20456651 Msa0320170:CDS 55.0%
AACAGGAGGAACAGCAGCAG+GGG - chr2_4:20456534-20456553 None:intergenic 55.0%
CTAACAGGAGGAACAGCAGC+AGG - chr2_4:20456536-20456555 None:intergenic 55.0%
CTGCTGCTGTTCCTCCTGTT+AGG + chr2_4:20456534-20456553 Msa0320170:CDS 55.0%
! ACTGAAGGAACTGGTGGTGC+TGG + chr2_4:20456632-20456651 Msa0320170:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 20456217 20457820 20456217 ID=Msa0320170;Name=Msa0320170
chr2_4 mRNA 20456217 20457820 20456217 ID=Msa0320170-mRNA-1;Parent=Msa0320170;Name=Msa0320170-mRNA-1;_AED=0.35;_eAED=0.35;_QI=286|1|1|1|1|1|2|352|157
chr2_4 exon 20456217 20456683 20456217 ID=Msa0320170-mRNA-1:exon:7525;Parent=Msa0320170-mRNA-1
chr2_4 exon 20457176 20457820 20457176 ID=Msa0320170-mRNA-1:exon:7526;Parent=Msa0320170-mRNA-1
chr2_4 five_prime_UTR 20456217 20456502 20456217 ID=Msa0320170-mRNA-1:five_prime_utr;Parent=Msa0320170-mRNA-1
chr2_4 CDS 20456503 20456683 20456503 ID=Msa0320170-mRNA-1:cds;Parent=Msa0320170-mRNA-1
chr2_4 CDS 20457176 20457468 20457176 ID=Msa0320170-mRNA-1:cds;Parent=Msa0320170-mRNA-1
chr2_4 three_prime_UTR 20457469 20457820 20457469 ID=Msa0320170-mRNA-1:three_prime_utr;Parent=Msa0320170-mRNA-1
Gene Sequence

>Msa0320170

ATGGGTGTACAAACTCAGGAGTATGCTACCCCTGCTGCTGTTCCTCCTGTTAGGCTCTTCAAAGCCATGTCATTAGAGTTTCATAACCTCTTCCCAAAGCTTGTGGAAGTGATCCAAAGTATTGAGTTCACTGAAGGAACTGGTGGTGCTGGAACAATCAAGAAGCTCACCACAGTTGAAGGTGGAGAGACCAAGTATGTGCTACACAGAGTGGATGAAATTGATGAGACTAAATTTGTGTACAACTTTAGCATTATTGGAGGCACTGGATTGGCTGACACATTAGAAAAAGTCTCATTCAAGAGCCAATTGGTGGAAGGACCAAATGGTGGGTCCATTAGGAATGTACATGTTGATTATTTTACCAAAGGTGATTATAATTTAAGTGAGGAGGAGTTGAAAGCTGGTAAAGCAAAGGTTGAAGGACTTGTAAAGCTTGTTGAAGGGTACCTTTTGGCAAATCCTGATTACTGA

Protein sequence

>Msa0320170

MGVQTQEYATPAAVPPVRLFKAMSLEFHNLFPKLVEVIQSIEFTEGTGGAGTIKKLTTVEGGETKYVLHRVDEIDETKFVYNFSIIGGTGLADTLEKVSFKSQLVEGPNGGSIRNVHVDYFTKGDYNLSEEELKAGKAKVEGLVKLVEGYLLANPDY*