AlfalfaGEDB | Msa0320170

M. sativa cultivar zhongmu-4 / Msa0320170

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320170	XP_003594836.1	99.363	157	1	0	1	157	1	157	2.04e-108	315

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320170	sp\|E6YBW4\|PR10_SOYBN	77.707	157	35	0	1	157	1	157	3.65e-85	249

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0320170	0.840536	8.195763e-58	-8.615850e-47
Msa0002110	Msa0320170	-0.820081	8.280551e-53	-8.615850e-47
Msa0002300	Msa0320170	0.803795	2.939962e-49	-8.615850e-47
Msa0002700	Msa0320170	-0.803261	3.793442e-49	-8.615850e-47
Msa0003840	Msa0320170	0.801346	9.403304e-49	-8.615850e-47
Msa0004180	Msa0320170	-0.826962	2.033704e-54	-8.615850e-47
Msa0004940	Msa0320170	0.829438	5.148101e-55	-8.615850e-47
Msa0004990	Msa0320170	0.812135	4.937165e-51	-8.615850e-47
Msa0006480	Msa0320170	0.804947	1.691073e-49	-8.615850e-47
Msa0007810	Msa0320170	-0.822800	1.951489e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320170	MtrunA17_Chr2g0295081	99.363	157	1	1	157	1	157	1.88e-112	315
Msa0320170	MtrunA17_Chr2g0295021	60.510	157	62	1	157	1	157	2.87e-63	191
Msa0320170	MtrunA17_Chr2g0295001	60.510	157	62	1	157	1	157	2.87e-63	191
Msa0320170	MtrunA17_Chr2g0295064	58.599	157	65	1	157	68	224	4.13e-61	188
Msa0320170	MtrunA17_Chr2g0295041	57.962	157	66	1	157	1	157	1.22e-59	182
Msa0320170	MtrunA17_Chr2g0295051	56.688	157	68	1	157	1	157	3.12e-58	178
Msa0320170	MtrunA17_Chr4g0067951	55.414	157	70	1	157	1	157	5.26e-56	172
Msa0320170	MtrunA17_Chr6g0462311	54.140	157	72	1	157	1	157	1.38e-54	169
Msa0320170	MtrunA17_Chr2g0295141	48.408	157	81	1	157	1	157	6.60e-50	157
Msa0320170	MtrunA17_Chr2g0295091	47.771	157	82	1	157	1	157	2.42e-48	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 81 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGAGGAACAGCAGCAG+GGG	0.564864	2_4:-20456531	None:intergenic
AAGAAGCTCACCACAGTTGA+AGG	0.458485	2_4:+20456662	Msa0320170:CDS
AAGGTTGGGTTGTAAGATGG+GGG	0.654059	2_4:+20457531	Msa0320170:three_prime_UTR
AATAACAACCAGATTAAGGT+TGG	0.443346	2_4:+20457516	Msa0320170:three_prime_UTR
AATTAAGCTCAGTATGTGTT+TGG	0.504243	2_4:-20456294	None:intergenic
AATTAATAACAACCAGATTA+AGG	0.281625	2_4:+20457512	Msa0320170:three_prime_UTR
AATTAGAGTTAATAAGAACT+TGG	0.482146	2_4:+20457477	Msa0320170:three_prime_UTR
ACTAGTACTACCACCATATG+GGG	0.664820	2_4:-20456325	None:intergenic
ACTGAAGGAACTGGTGGTGC+TGG	0.463110	2_4:+20456632	Msa0320170:CDS
ACTTAAATTATAATCACCTT+TGG	0.409104	2_4:-20457359	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAAGCTCAGTATGTGTT+TGG	-	chr2_4:20456297-20456316	None:intergenic	30.0%
CATTGAGAAATTCTTCATCA+TGG	+	chr2_4:20456484-20456503	Msa0320170:exon	30.0%
GTTATGAAACTCTAATGACA+TGG	-	chr2_4:20456570-20456589	None:intergenic	30.0%
TGAGTGAATTTGATGAATAC+AGG	+	chr2_4:20457154-20457173	Msa0320170:intron	30.0%
GTGTACAACTTTAGCATTAT+TGG	+	chr2_4:20457232-20457251	Msa0320170:CDS	30.0%
TACAACTTTAGCATTATTGG+AGG	+	chr2_4:20457235-20457254	Msa0320170:CDS	30.0%
ATCAACATGTACATTCCTAA+TGG	-	chr2_4:20457332-20457351	None:intergenic	30.0%
AATAACAACCAGATTAAGGT+TGG	+	chr2_4:20457516-20457535	Msa0320170:three_prime_UTR	30.0%
ATAACAACCAGATTAAGGTT+GGG	+	chr2_4:20457517-20457536	Msa0320170:three_prime_UTR	30.0%
CATTCTCATAACTCATACTT+AGG	-	chr2_4:20457557-20457576	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	20456217	20457820	20456217	ID=Msa0320170;Name=Msa0320170
chr2_4	mRNA	20456217	20457820	20456217	ID=Msa0320170-mRNA-1;Parent=Msa0320170;Name=Msa0320170-mRNA-1;_AED=0.35;_eAED=0.35;_QI=286\|1\|1\|1\|1\|1\|2\|352\|157
chr2_4	exon	20456217	20456683	20456217	ID=Msa0320170-mRNA-1:exon:7525;Parent=Msa0320170-mRNA-1
chr2_4	exon	20457176	20457820	20457176	ID=Msa0320170-mRNA-1:exon:7526;Parent=Msa0320170-mRNA-1
chr2_4	five_prime_UTR	20456217	20456502	20456217	ID=Msa0320170-mRNA-1:five_prime_utr;Parent=Msa0320170-mRNA-1
chr2_4	CDS	20456503	20456683	20456503	ID=Msa0320170-mRNA-1:cds;Parent=Msa0320170-mRNA-1
chr2_4	CDS	20457176	20457468	20457176	ID=Msa0320170-mRNA-1:cds;Parent=Msa0320170-mRNA-1
chr2_4	three_prime_UTR	20457469	20457820	20457469	ID=Msa0320170-mRNA-1:three_prime_utr;Parent=Msa0320170-mRNA-1

Gene Sequence

>Msa0320170

ATGGGTGTACAAACTCAGGAGTATGCTACCCCTGCTGCTGTTCCTCCTGTTAGGCTCTTCAAAGCCATGTCATTAGAGTTTCATAACCTCTTCCCAAAGCTTGTGGAAGTGATCCAAAGTATTGAGTTCACTGAAGGAACTGGTGGTGCTGGAACAATCAAGAAGCTCACCACAGTTGAAGGTGGAGAGACCAAGTATGTGCTACACAGAGTGGATGAAATTGATGAGACTAAATTTGTGTACAACTTTAGCATTATTGGAGGCACTGGATTGGCTGACACATTAGAAAAAGTCTCATTCAAGAGCCAATTGGTGGAAGGACCAAATGGTGGGTCCATTAGGAATGTACATGTTGATTATTTTACCAAAGGTGATTATAATTTAAGTGAGGAGGAGTTGAAAGCTGGTAAAGCAAAGGTTGAAGGACTTGTAAAGCTTGTTGAAGGGTACCTTTTGGCAAATCCTGATTACTGA

Protein sequence

>Msa0320170

MGVQTQEYATPAAVPPVRLFKAMSLEFHNLFPKLVEVIQSIEFTEGTGGAGTIKKLTTVEGGETKYVLHRVDEIDETKFVYNFSIIGGTGLADTLEKVSFKSQLVEGPNGGSIRNVHVDYFTKGDYNLSEEELKAGKAKVEGLVKLVEGYLLANPDY*