AlfalfaGEDB | Msa1380010

M. sativa cultivar zhongmu-4 / Msa1380010

KEGG: K02907
GO: -
PFAM: PF00327.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380010	XP_013447145.1	99.057	106	1	0	1	106	1	106	5.91e-71	216

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380010	A0A072TUQ6	99.057	106	1	0	1	106	1	106	2.82e-71	216

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0147510	Msa1380010	-0.801403	9.155857e-49	-8.615850e-47
Msa0436480	Msa1380010	0.964116	6.363928e-123	-8.615850e-47
Msa0488800	Msa1380010	-0.803295	3.731845e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380010	MtrunA17_Chr8g0387721	99.057	106	1	0	1	106	1	106	5.44e-75	216
Msa1380010	MtrunA17_Chr8g0342041	97.170	106	3	0	1	106	1	106	7.10e-74	214

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380010	AT5G55140.1	62.857	105	38	1	3	106	1	105	1.88e-44	140

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Find 88 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAATAAAACCATATG+AGG	0.477102	tig0020315:-144612	None:intergenic
AAAGCAACATAGGTGCACTT+TGG	0.556523	tig0020315:+144230	Msa1380010:CDS
AACCCCAACCCTAGCGCCGC+CGG	0.521091	tig0020315:+141550	Msa1380010:five_prime_UTR
AACGCTAGTGAGGGGTATTC+CGG	0.301510	tig0020315:+144200	Msa1380010:CDS
AAGACTTACCTCCTATGCGG+TGG	0.667701	tig0020315:-141609	None:intergenic
AAGCAGAAGAAGCAGGTTGA+TGG	0.435151	tig0020315:-144515	None:intergenic
AAGTAGAGGCCGGCGGCGCT+AGG	0.459350	tig0020315:-141559	None:intergenic
AATAGACTGAATTTCGGAGA+AGG	0.579412	tig0020315:+141423	Msa1380010:five_prime_UTR
AATAGAGGGGAGAAGTGACC+CGG	0.577040	tig0020315:+141474	Msa1380010:five_prime_UTR
ACAGTTTATCAATTTCAGTT+TGG	0.366118	tig0020315:+144724	Msa1380010:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTAAGTACAACTTAGATT+AGG	-	tig0020315:141393-141412	None:intergenic	30.0%
ATCTAAGTTGTACTTAGAGA+TGG	+	tig0020315:141394-141413	Msa1380010:five_prime_UTR	30.0%
TGTACGAATAGACTGAATTT+CGG	+	tig0020315:141417-141436	Msa1380010:five_prime_UTR	30.0%
AACAACCTAAACCTTAACAT+TGG	-	tig0020315:141688-141707	None:intergenic	30.0%
TCTTCATTAAAACTTCAGCA+AGG	+	tig0020315:142077-142096	Msa1380010:intron	30.0%
AAAACTCAAAACTAGTGTGA+GGG	+	tig0020315:142915-142934	Msa1380010:intron	30.0%
AGAGATAAAAAACACATTCC+TGG	+	tig0020315:143046-143065	Msa1380010:intron	30.0%
GAGATAAAAAACACATTCCT+GGG	+	tig0020315:143047-143066	Msa1380010:intron	30.0%
GAAAGAAGAATACCTATGTT+TGG	+	tig0020315:143082-143101	Msa1380010:intron	30.0%
AATACCTATGTTTGGTAGAA+AGG	+	tig0020315:143090-143109	Msa1380010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020315	gene	141371	144849	141371	ID=Msa1380010;Name=Msa1380010
tig0020315	mRNA	141371	144849	141371	ID=Msa1380010-mRNA-1;Parent=Msa1380010;Name=Msa1380010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=254\|1\|1\|1\|0.5\|0.66\|3\|310\|106
tig0020315	exon	141371	141622	141371	ID=Msa1380010-mRNA-1:exon:6830;Parent=Msa1380010-mRNA-1
tig0020315	exon	144130	144329	144130	ID=Msa1380010-mRNA-1:exon:6831;Parent=Msa1380010-mRNA-1
tig0020315	exon	144417	144849	144417	ID=Msa1380010-mRNA-1:exon:6832;Parent=Msa1380010-mRNA-1
tig0020315	five_prime_UTR	141371	141622	141371	ID=Msa1380010-mRNA-1:five_prime_utr;Parent=Msa1380010-mRNA-1
tig0020315	five_prime_UTR	144130	144131	144130	ID=Msa1380010-mRNA-1:five_prime_utr;Parent=Msa1380010-mRNA-1
tig0020315	CDS	144132	144329	144132	ID=Msa1380010-mRNA-1:cds;Parent=Msa1380010-mRNA-1
tig0020315	CDS	144417	144539	144417	ID=Msa1380010-mRNA-1:cds;Parent=Msa1380010-mRNA-1
tig0020315	three_prime_UTR	144540	144849	144540	ID=Msa1380010-mRNA-1:three_prime_utr;Parent=Msa1380010-mRNA-1

Gene Sequence	>Msa1380010 ATGAGCATGAATGCGTTCAAGGCATATAAGTCCTGTGTCCCAATTGCTTATAGCCCCAATCTCTACATAACGCTAGTGAGGGGTATTCCGGGGACCAGAAAGCAACATAGGTGCACTTTGGAAGCACTACGCCTCGGCAAATGCAACCGAACTGTCATGCGATGGAACACACCTACTGTTAGGGGAATGATCCAGCAGGTCAAGAGGTTAGTTGTTGTTGAGACAGAGGAGATGTACAAGGCCCGCAAAGAGAAGGAGGAAACCCACAGAGCTCTTCGTCCTCCATTGGTCATAAACCATCAACCTGCTTCTTCTGCTTAG
Protein sequence	>Msa1380010 MSMNAFKAYKSCVPIAYSPNLYITLVRGIPGTRKQHRCTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKEKEETHRALRPPLVINHQPASSA*