Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147510 | XP_003589520.1 | 87.778 | 360 | 40 | 2 | 1 | 359 | 1 | 357 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147510 | G7I7R9 | 87.778 | 360 | 40 | 2 | 1 | 359 | 1 | 357 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045920 | Msa0147510 | 0.811744 | 6.006771e-51 | -8.615850e-47 |
| Msa0138020 | Msa0147510 | 0.802634 | 5.110968e-49 | -8.615850e-47 |
| Msa0147510 | Msa0229590 | 0.801420 | 9.080905e-49 | -8.615850e-47 |
| Msa0147510 | Msa0357830 | 0.810325 | 1.219263e-50 | -8.615850e-47 |
| Msa0147510 | Msa0357840 | 0.803363 | 3.612135e-49 | -8.615850e-47 |
| Msa0147510 | Msa0831850 | 0.811115 | 8.225059e-51 | -8.615850e-47 |
| Msa0147510 | Msa0903990 | 0.805862 | 1.087502e-49 | -8.615850e-47 |
| Msa0147510 | Msa0909110 | 0.808565 | 2.909582e-50 | -8.615850e-47 |
| Msa0147510 | Msa1001390 | 0.802469 | 5.528253e-49 | -8.615850e-47 |
| Msa0147510 | Msa1014730 | 0.821952 | 3.071151e-53 | -8.615850e-47 |
| Msa0147510 | Msa1026410 | 0.823753 | 1.168960e-53 | -8.615850e-47 |
| Msa0147510 | Msa1035480 | 0.822252 | 2.617045e-53 | -8.615850e-47 |
| Msa0147510 | Msa1093260 | 0.804202 | 2.418696e-49 | -8.615850e-47 |
| Msa0147510 | Msa1111870 | 0.824172 | 9.321316e-54 | -8.615850e-47 |
| Msa0147510 | Msa1163090 | 0.800861 | 1.181570e-48 | -8.615850e-47 |
| Msa0147510 | Msa1331320 | 0.802675 | 5.014047e-49 | -8.615850e-47 |
| Msa0147510 | Msa1380010 | -0.801403 | 9.155857e-49 | -8.615850e-47 |
| Msa0147510 | Msa1407470 | 0.819195 | 1.319388e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147510 | MtrunA17_Chr1g0156871 | 87.778 | 360 | 40 | 2 | 1 | 359 | 1 | 357 | 0.0 | 535 |
| Msa0147510 | MtrunA17_Chr1g0162891 | 61.961 | 255 | 62 | 5 | 106 | 359 | 7 | 227 | 2.69e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 111 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTCCTCTCTTTCTTTC+TGG | -0.009349 | 1_4:+7447237 | None:intergenic |
| CTTTGTGCGTTTCATATCTT+AGG | 0.152316 | 1_4:-7448441 | Msa0147510:five_prime_UTR |
| CCTCTCCTTCCTCTCCTTCT+TGG | 0.164010 | 1_4:+7447181 | None:intergenic |
| CTTGATCGACGATTCGATTA+AGG | 0.202790 | 1_4:-7448264 | Msa0147510:intron |
| GGACCCAATTCATATGTTAT+TGG | 0.278702 | 1_4:+7446357 | None:intergenic |
| ACCCTAACTTTCTCTCTCTA+AGG | 0.285078 | 1_4:-7448366 | Msa0147510:five_prime_UTR |
| TCAGCCAATAACATATGAAT+TGG | 0.306059 | 1_4:-7446361 | Msa0147510:CDS |
| ACTTCTCATGCAAGTGTTAC+TGG | 0.309818 | 1_4:-7447089 | Msa0147510:CDS |
| GGTCTCGGCTTTCTTAATAC+TGG | 0.311146 | 1_4:+7446527 | None:intergenic |
| AGGAGAGGAAGGAGAGGAGG+AGG | 0.321667 | 1_4:-7447175 | Msa0147510:CDS |
| ATCCTTAGAGAGAGAAAGTT+AGG | 0.323553 | 1_4:+7448364 | None:intergenic |
| TTTAAAGATCCGTTTGGATT+TGG | 0.329981 | 1_4:-7447267 | Msa0147510:intron |
| CCCCAATTGAAATCCTTGTT+TGG | 0.330324 | 1_4:+7446710 | None:intergenic |
| CGGCAATGGTTTACAGACTT+TGG | 0.340853 | 1_4:+7446476 | None:intergenic |
| GGCAATGGTTTACAGACTTT+GGG | 0.346273 | 1_4:+7446477 | None:intergenic |
| GAGACGGGCATTGTTTGTTT+TGG | 0.346686 | 1_4:+7446303 | None:intergenic |
| GGAGAGGAGGAGGGAGAAGA+AGG | 0.356929 | 1_4:-7447165 | Msa0147510:CDS |
| ATCCAAACAAGGATTTCAAT+TGG | 0.379094 | 1_4:-7446712 | Msa0147510:CDS |
| AAGCTTTCTCACCATGATCT+TGG | 0.386914 | 1_4:+7446865 | None:intergenic |
| TCCAAACAAGGATTTCAATT+GGG | 0.393476 | 1_4:-7446711 | Msa0147510:CDS |
| AATTTCCATGGAGCTGACTT+AGG | 0.395443 | 1_4:+7446505 | None:intergenic |
| ATATACCCTGGAGGTGGAAA+AGG | 0.398371 | 1_4:+7448305 | None:intergenic |
| GAGGGAGAAGAAGGAGAAGA+AGG | 0.410322 | 1_4:-7447156 | Msa0147510:CDS |
| TGGGTCCATTGGATCAAGAT+TGG | 0.416330 | 1_4:-7446341 | Msa0147510:CDS |
| TCAAAGCAGCAAGAGGAAAC+GGG | 0.420107 | 1_4:-7446904 | Msa0147510:CDS |
| CTCAAAGCAGCAAGAGGAAA+CGG | 0.424038 | 1_4:-7446905 | Msa0147510:CDS |
| ATCTTCTGTTTCTTTGAGAC+GGG | 0.430208 | 1_4:+7446288 | None:intergenic |
| AATCAAAATGGAACTGTGTA+TGG | 0.440293 | 1_4:+7446189 | None:intergenic |
| AACATATGAATTGGGTCCAT+TGG | 0.441455 | 1_4:-7446352 | Msa0147510:CDS |
| AATCCTTGTTTGGATTCCTC+AGG | 0.444763 | 1_4:+7446720 | None:intergenic |
| GGAGAGGAAGGAGAGGAGGA+GGG | 0.451457 | 1_4:-7447174 | Msa0147510:CDS |
| CGGATACAACAGCTGGTGTC+TGG | 0.453427 | 1_4:+7445979 | None:intergenic |
| CTTTGGGAGCAGAATTTCCA+TGG | 0.462196 | 1_4:+7446493 | None:intergenic |
| CGCTGAGAAAGCGGCCAAGA+AGG | 0.463286 | 1_4:-7447195 | Msa0147510:CDS |
| CAAAATCTCTATTGCAACCT+CGG | 0.463974 | 1_4:-7446248 | Msa0147510:CDS |
| CAGGACCTGCCATTCGAATC+CGG | 0.464929 | 1_4:-7446767 | Msa0147510:CDS |
| GTGTTGCAGATTTGCTTGCT+CGG | 0.468663 | 1_4:-7446578 | Msa0147510:CDS |
| CTTAATCGAATCGTCGATCA+AGG | 0.469381 | 1_4:+7448265 | None:intergenic |
| TGGTGCTTTAAAGATCCGTT+TGG | 0.471581 | 1_4:-7447273 | Msa0147510:intron |
| ATTTCCATGGAGCTGACTTA+GGG | 0.476663 | 1_4:+7446506 | None:intergenic |
| AGGAGAAGGACAAGAAGGAC+AGG | 0.477194 | 1_4:-7447223 | Msa0147510:CDS |
| GCATCAACAGGAACCACATT+CGG | 0.477431 | 1_4:+7446456 | None:intergenic |
| GGTTCGCGATGTTTCCTCAA+TGG | 0.481505 | 1_4:+7446741 | None:intergenic |
| TTTGTGCGTTTCATATCTTA+GGG | 0.483291 | 1_4:-7448440 | Msa0147510:five_prime_UTR |
| AATCTTCTGTTTCTTTGAGA+CGG | 0.492372 | 1_4:+7446287 | None:intergenic |
| CAAGCTCAATAATGAAGTAA+AGG | 0.495123 | 1_4:-7447057 | Msa0147510:CDS |
| GCAACACCAACACTTCTTGA+CGG | 0.496396 | 1_4:+7446594 | None:intergenic |
| ATGGAGCTGACTTAGGGTCT+CGG | 0.498034 | 1_4:+7446512 | None:intergenic |
| CAGCCAATAACATATGAATT+GGG | 0.502764 | 1_4:-7446360 | Msa0147510:CDS |
| TTATTAGTATATACATTCAT+CGG | 0.509143 | 1_4:+7445959 | None:intergenic |
| TTGAGAACTATCAGAGGAGT+AGG | 0.510918 | 1_4:+7446923 | None:intergenic |
| GAGTTGCAGATTTGCTTGCT+CGG | 0.512787 | 1_4:-7446668 | Msa0147510:CDS |
| GCTGCTGCTACAGCATCAAC+AGG | 0.513129 | 1_4:+7446444 | None:intergenic |
| GTCTCGGCTTTCTTAATACT+GGG | 0.513175 | 1_4:+7446528 | None:intergenic |
| CCAAACAAGGATTTCAATTG+GGG | 0.515684 | 1_4:-7446710 | Msa0147510:CDS |
| TCAGAGGAGTAGGGCTCTTG+AGG | 0.517781 | 1_4:+7446933 | None:intergenic |
| CCAGAAAGAAAGAGAGGAGA+AGG | 0.518821 | 1_4:-7447237 | Msa0147510:CDS |
| AGCGGCCAAGAAGGAGAGGA+AGG | 0.519841 | 1_4:-7447186 | Msa0147510:CDS |
| AGTTGCAGATTTGCTTGCTC+GGG | 0.524613 | 1_4:-7446667 | Msa0147510:CDS |
| TCCTTAGAGAGAGAAAGTTA+GGG | 0.529291 | 1_4:+7448365 | None:intergenic |
| AAAATCTCTATTGCAACCTC+GGG | 0.530765 | 1_4:-7446247 | Msa0147510:CDS |
| CAGGAAAGCCGCTGAGAAAG+CGG | 0.531019 | 1_4:-7447204 | Msa0147510:CDS |
| ATCGTCGATCAAGGAAGAAT+CGG | 0.533316 | 1_4:+7448274 | None:intergenic |
| AATAACCAATCTTGATCCAA+TGG | 0.537400 | 1_4:+7446336 | None:intergenic |
| AATGCATATATGTCAGCCTC+AGG | 0.539207 | 1_4:+7446213 | None:intergenic |
| AAGAGAGGAGAAGGACAAGA+AGG | 0.543547 | 1_4:-7447228 | Msa0147510:CDS |
| GACAGGTTGCTCAAGTTCCT+CGG | 0.546528 | 1_4:+7446962 | None:intergenic |
| TTCGAATCCGGCTTCCATTG+AGG | 0.550158 | 1_4:-7446755 | Msa0147510:CDS |
| CTGTAAACCATTGCCGAATG+TGG | 0.550168 | 1_4:-7446469 | Msa0147510:CDS |
| TATTGGCTGAATGTGAAGTA+AGG | 0.551252 | 1_4:+7446374 | None:intergenic |
| GGGTCATGTTCGAGAAGTGT+TGG | 0.552793 | 1_4:-7446690 | Msa0147510:CDS |
| GGAAGCCGGATTCGAATGGC+AGG | 0.554110 | 1_4:+7446762 | None:intergenic |
| AGTTGATGAAAGTCGAAGGA+TGG | 0.554737 | 1_4:-7446412 | Msa0147510:CDS |
| CCAAGAAGGAGAGGAAGGAG+AGG | 0.563149 | 1_4:-7447181 | Msa0147510:CDS |
| TGTTGCAGATTTGCTTGCTC+GGG | 0.564182 | 1_4:-7446577 | Msa0147510:CDS |
| ATGAGAATGAACAACTTGAA+AGG | 0.565109 | 1_4:-7446995 | Msa0147510:CDS |
| TATCTGTCACAATGAAATGT+TGG | 0.565238 | 1_4:+7446059 | None:intergenic |
| TATACCCTGGAGGTGGAAAA+GGG | 0.565421 | 1_4:+7448306 | None:intergenic |
| CATTCATCGGATACAACAGC+TGG | 0.566842 | 1_4:+7445972 | None:intergenic |
| GAGTTACCTAGCCAAGATCA+TGG | 0.567970 | 1_4:-7446876 | Msa0147510:intron |
| GGAGCTTCTCCAAATCCAAA+CGG | 0.568605 | 1_4:+7447258 | None:intergenic |
| TGCTTGATATACCCTGGAGG+TGG | 0.572562 | 1_4:+7448299 | None:intergenic |
| GCTTTCTTAATACTGGGCAA+TGG | 0.573806 | 1_4:+7446534 | None:intergenic |
| AGAAGGAGAGGAAGGAGAGG+AGG | 0.573898 | 1_4:-7447178 | Msa0147510:CDS |
| GATGTTTCCTCAATGGAAGC+CGG | 0.576850 | 1_4:+7446748 | None:intergenic |
| TTCTCACCATGATCTTGGCT+AGG | 0.578085 | 1_4:+7446870 | None:intergenic |
| CAATGGAAGCCGGATTCGAA+TGG | 0.579966 | 1_4:+7446758 | None:intergenic |
| GGCTCTTGAGGAGAACAGAC+AGG | 0.583221 | 1_4:+7446945 | None:intergenic |
| AGAAAGCGGCCAAGAAGGAG+AGG | 0.591281 | 1_4:-7447190 | Msa0147510:CDS |
| ATAGTTCTCAAAGCAGCAAG+AGG | 0.594635 | 1_4:-7446911 | Msa0147510:CDS |
| TCGGTATGCTTGATATACCC+TGG | 0.595782 | 1_4:+7448293 | None:intergenic |
| ACAGGAACCACATTCGGCAA+TGG | 0.596306 | 1_4:+7446462 | None:intergenic |
| AGACAGTGCGAAGTTGCGTA+AGG | 0.603959 | 1_4:-7447027 | Msa0147510:CDS |
| AGACAGTTGATGAAAGTCGA+AGG | 0.608102 | 1_4:-7446416 | Msa0147510:CDS |
| AAAAGGGAAGCAACGAGACA+TGG | 0.608119 | 1_4:+7448322 | None:intergenic |
| ACATCAATCCACAATCATGT+TGG | 0.609522 | 1_4:+7446018 | None:intergenic |
| GAACCTGAGGAATCCAAACA+AGG | 0.615001 | 1_4:-7446723 | Msa0147510:CDS |
| GAGACCCTAAGTCAGCTCCA+TGG | 0.617406 | 1_4:-7446510 | Msa0147510:CDS |
| TGAGAACTATCAGAGGAGTA+GGG | 0.618458 | 1_4:+7446924 | None:intergenic |
| GAGACACCGTCAAGAAGTGT+TGG | 0.622226 | 1_4:-7446600 | Msa0147510:CDS |
| GAAGCTCCAGAAAGAAAGAG+AGG | 0.632197 | 1_4:-7447243 | Msa0147510:CDS |
| GAGGAAACATCGCGAACCTG+AGG | 0.640455 | 1_4:-7446736 | Msa0147510:CDS |
| CAAAGCAGCAAGAGGAAACG+GGG | 0.646069 | 1_4:-7446903 | Msa0147510:CDS |
| AATGAACAACTTGAAAGGAG+TGG | 0.646866 | 1_4:-7446990 | Msa0147510:CDS |
| CTTCTTGGCCGCTTTCTCAG+CGG | 0.653964 | 1_4:+7447196 | None:intergenic |
| TCAGGCATATATTGAGCCCG+AGG | 0.657645 | 1_4:+7446231 | None:intergenic |
| TCGGGCTCAATATATGCCTG+AGG | 0.670652 | 1_4:-7446229 | Msa0147510:CDS |
| GCTGCTTTGAGAACTATCAG+AGG | 0.680730 | 1_4:+7446917 | None:intergenic |
| TGAAAGGAGTGGCATTACCG+AGG | 0.705152 | 1_4:-7446979 | Msa0147510:CDS |
| ACTTTCTTGATACTTAGCAG+CGG | 0.731548 | 1_4:+7446624 | None:intergenic |
| GTATGCTTGATATACCCTGG+AGG | 0.750443 | 1_4:+7448296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATGCTATTTTTTTATA+TGG | - | chr1_4:7448449-7448468 | Msa0147510:five_prime_UTR | 10.0% |
| !! | CAAATTAGGTTAAAAAAATT+GGG | + | chr1_4:7446301-7446320 | None:intergenic | 15.0% |
| !! | ACAAATTAGGTTAAAAAAAT+TGG | + | chr1_4:7446302-7446321 | None:intergenic | 15.0% |
| !!! | ATTTATTAATTATTTCTTGG+TGG | - | chr1_4:7446486-7446505 | Msa0147510:CDS | 15.0% |
| !!! | TTTATTAATTATTTCTTGGT+GGG | - | chr1_4:7446487-7446506 | Msa0147510:CDS | 15.0% |
| !! | AACATAAATTAAAATCACAT+GGG | + | chr1_4:7446522-7446541 | None:intergenic | 15.0% |
| !! | AAACATAAATTAAAATCACA+TGG | + | chr1_4:7446523-7446542 | None:intergenic | 15.0% |
| !!! | TTTTAATTCAAAAAAGCTTT+AGG | + | chr1_4:7446778-7446797 | None:intergenic | 15.0% |
| !!! | AACTTTGATTTTTGTTTTTT+TGG | - | chr1_4:7446953-7446972 | Msa0147510:CDS | 15.0% |
| !! | TACATATTAGATATTAAACA+AGG | + | chr1_4:7447583-7447602 | None:intergenic | 15.0% |
| !! | AAAATTCCAAAAAATCAAAA+TGG | + | chr1_4:7448209-7448228 | None:intergenic | 15.0% |
| !! | TTATTAGTATATACATTCAT+CGG | + | chr1_4:7448427-7448446 | None:intergenic | 15.0% |
| !! | ATAAAAACAAAAACCCTAAT+TGG | + | chr1_4:7446360-7446379 | None:intergenic | 20.0% |
| !!! | AATTAGGGTTTTTGTTTTTA+TGG | - | chr1_4:7446359-7446378 | Msa0147510:CDS | 20.0% |
| !! | TTGTAACAAGATAACAAATT+AGG | - | chr1_4:7446413-7446432 | Msa0147510:CDS | 20.0% |
| !! | TGTAACAAGATAACAAATTA+GGG | - | chr1_4:7446414-7446433 | Msa0147510:CDS | 20.0% |
| !!! | TTTAACTTATAAAACGTTCT+AGG | + | chr1_4:7446552-7446571 | None:intergenic | 20.0% |
| !!! | GTTAAGAACTCTTTTAATAT+TGG | - | chr1_4:7446741-7446760 | Msa0147510:CDS | 20.0% |
| !!! | TGATTACTTGATTTTATAAC+TGG | - | chr1_4:7447012-7447031 | Msa0147510:CDS | 20.0% |
| !!! | ATAACAACATTTTCAAATAG+CGG | + | chr1_4:7447091-7447110 | None:intergenic | 20.0% |
| !! | TTTGAAGAAATTTTCTTCTC+TGG | + | chr1_4:7445989-7446008 | None:intergenic | 25.0% |
| ! | TAGGTTAAAAAAATTGGGAT+CGG | + | chr1_4:7446296-7446315 | None:intergenic | 25.0% |
| !!! | AACCTAATTTGTGATTTTCT+TGG | - | chr1_4:7446310-7446329 | Msa0147510:CDS | 25.0% |
| !!! | ACCTAATTTGTGATTTTCTT+GGG | - | chr1_4:7446311-7446330 | Msa0147510:CDS | 25.0% |
| ! | TAGATGATTATAGCTCATTT+AGG | - | chr1_4:7446715-7446734 | Msa0147510:CDS | 25.0% |
| ! | ACAATAACCTAACTCTAAAT+TGG | + | chr1_4:7446828-7446847 | None:intergenic | 25.0% |
| ! | TATTGTTATGTGAGTTAGTT+AGG | - | chr1_4:7446842-7446861 | Msa0147510:intron | 25.0% |
| !!! | TTTTTTTGGTGCAATTTTTG+TGG | - | chr1_4:7446967-7446986 | Msa0147510:CDS | 25.0% |
| ! | GCTATTTGAAAATGTTGTTA+TGG | - | chr1_4:7447090-7447109 | Msa0147510:CDS | 25.0% |
| ! | TATGTATTCTTATGTGAAAC+AGG | - | chr1_4:7447597-7447616 | Msa0147510:intron | 25.0% |
| !!! | TCAAGATTGGTTATTTTGTT+CGG | - | chr1_4:7448055-7448074 | Msa0147510:intron | 25.0% |
| !!! | ACAGTTCCATTTTGATTTTT+TGG | - | chr1_4:7448200-7448219 | Msa0147510:intron | 25.0% |
| ! | TCTGTAAAAAATTAATGCAC+AGG | + | chr1_4:7448288-7448307 | None:intergenic | 25.0% |
| !!! | TGTGCATTAATTTTTTACAG+AGG | - | chr1_4:7448287-7448306 | Msa0147510:CDS | 25.0% |
| TTTGTGCGTTTCATATCTTA+GGG | - | chr1_4:7445943-7445962 | Msa0147510:three_prime_UTR | 30.0% | |
| AAATTCAATCAAGATCACAC+AGG | + | chr1_4:7446185-7446204 | None:intergenic | 30.0% | |
| TCCCAAGAAAATCACAAATT+AGG | + | chr1_4:7446315-7446334 | None:intergenic | 30.0% | |
| AGATCTGGATTATACCAATT+AGG | - | chr1_4:7446343-7446362 | Msa0147510:CDS | 30.0% | |
| GATCTGGATTATACCAATTA+GGG | - | chr1_4:7446344-7446363 | Msa0147510:CDS | 30.0% | |
| GAAAAAATTGGTGCATCATT+GGG | + | chr1_4:7446589-7446608 | None:intergenic | 30.0% | |
| AGAAAAAATTGGTGCATCAT+TGG | + | chr1_4:7446590-7446609 | None:intergenic | 30.0% | |
| !!! | CACCAATTTTTTCTGTTACA+TGG | - | chr1_4:7446596-7446615 | Msa0147510:CDS | 30.0% |
| TGCCATGTAACAGAAAAAAT+TGG | + | chr1_4:7446601-7446620 | None:intergenic | 30.0% | |
| !!! | GTGATAGTTGTTTTGAATGA+AGG | - | chr1_4:7446663-7446682 | Msa0147510:CDS | 30.0% |
| !!! | ATAGTTGTTTTGAATGAAGG+TGG | - | chr1_4:7446666-7446685 | Msa0147510:CDS | 30.0% |
| ! | TCTTGAACCAATTTAGAGTT+AGG | - | chr1_4:7446818-7446837 | Msa0147510:intron | 30.0% |
| !!! | ACATTTTCAAATAGCGGATA+CGG | + | chr1_4:7447085-7447104 | None:intergenic | 30.0% |
| TTTAAAGATCCGTTTGGATT+TGG | - | chr1_4:7447116-7447135 | Msa0147510:CDS | 30.0% | |
| CAAGCTCAATAATGAAGTAA+AGG | - | chr1_4:7447326-7447345 | Msa0147510:intron | 30.0% | |
| ATGAGAATGAACAACTTGAA+AGG | - | chr1_4:7447388-7447407 | Msa0147510:intron | 30.0% | |
| ATCCAAACAAGGATTTCAAT+TGG | - | chr1_4:7447671-7447690 | Msa0147510:intron | 30.0% | |
| TCCAAACAAGGATTTCAATT+GGG | - | chr1_4:7447672-7447691 | Msa0147510:intron | 30.0% | |
| TCAGCCAATAACATATGAAT+TGG | - | chr1_4:7448022-7448041 | Msa0147510:intron | 30.0% | |
| CAGCCAATAACATATGAATT+GGG | - | chr1_4:7448023-7448042 | Msa0147510:intron | 30.0% | |
| AATAACCAATCTTGATCCAA+TGG | + | chr1_4:7448050-7448069 | None:intergenic | 30.0% | |
| ! | AATCTTCTGTTTCTTTGAGA+CGG | + | chr1_4:7448099-7448118 | None:intergenic | 30.0% |
| AATCAAAATGGAACTGTGTA+TGG | + | chr1_4:7448197-7448216 | None:intergenic | 30.0% | |
| ! | TTGGAATTTTTGTAGACAGT+AGG | - | chr1_4:7448219-7448238 | Msa0147510:intron | 30.0% |
| TATCTGTCACAATGAAATGT+TGG | + | chr1_4:7448327-7448346 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTCCAACATGATTG+TGG | - | chr1_4:7448357-7448376 | Msa0147510:five_prime_UTR | 30.0% |
| CTTTGTGCGTTTCATATCTT+AGG | - | chr1_4:7445942-7445961 | Msa0147510:three_prime_UTR | 35.0% | |
| ! | GAAGAAATTTTCTTCTCTGG+CGG | + | chr1_4:7445986-7446005 | None:intergenic | 35.0% |
| TCCTTAGAGAGAGAAAGTTA+GGG | + | chr1_4:7446021-7446040 | None:intergenic | 35.0% | |
| ATCCTTAGAGAGAGAAAGTT+AGG | + | chr1_4:7446022-7446041 | None:intergenic | 35.0% | |
| CTTGGGAATTAGAATAGATC+TGG | - | chr1_4:7446328-7446347 | Msa0147510:CDS | 35.0% | |
| AAAACAACTATCACTGTCGA+TGG | + | chr1_4:7446657-7446676 | None:intergenic | 35.0% | |
| GCTTGCAATGTTTGATTCTT+TGG | - | chr1_4:7447055-7447074 | Msa0147510:CDS | 35.0% | |
| AGAAGGAGAAGAAGGAAAAA+AGG | - | chr1_4:7447235-7447254 | Msa0147510:CDS | 35.0% | |
| AGAAGAAGGAAAAAAGGAGA+AGG | - | chr1_4:7447241-7447260 | Msa0147510:CDS | 35.0% | |
| GAAGAAGGAAAAAAGGAGAA+GGG | - | chr1_4:7447242-7447261 | Msa0147510:CDS | 35.0% | |
| AATGAACAACTTGAAAGGAG+TGG | - | chr1_4:7447393-7447412 | Msa0147510:intron | 35.0% | |
| CCAAACAAGGATTTCAATTG+GGG | - | chr1_4:7447673-7447692 | Msa0147510:intron | 35.0% | |
| ACTTTCTTGATACTTAGCAG+CGG | + | chr1_4:7447762-7447781 | None:intergenic | 35.0% | |
| ! | TATTGGCTGAATGTGAAGTA+AGG | + | chr1_4:7448012-7448031 | None:intergenic | 35.0% |
| GGACCCAATTCATATGTTAT+TGG | + | chr1_4:7448029-7448048 | None:intergenic | 35.0% | |
| AACATATGAATTGGGTCCAT+TGG | - | chr1_4:7448031-7448050 | Msa0147510:intron | 35.0% | |
| !! | ATCTTCTGTTTCTTTGAGAC+GGG | + | chr1_4:7448098-7448117 | None:intergenic | 35.0% |
| !!! | TAGAGATTTTGAGCACTGAA+CGG | + | chr1_4:7448126-7448145 | None:intergenic | 35.0% |
| CAAAATCTCTATTGCAACCT+CGG | - | chr1_4:7448135-7448154 | Msa0147510:intron | 35.0% | |
| AAAATCTCTATTGCAACCTC+GGG | - | chr1_4:7448136-7448155 | Msa0147510:intron | 35.0% | |
| ACATCAATCCACAATCATGT+TGG | + | chr1_4:7448368-7448387 | None:intergenic | 35.0% | |
| ACCCTAACTTTCTCTCTCTA+AGG | - | chr1_4:7446017-7446036 | Msa0147510:three_prime_UTR | 40.0% | |
| ATCGTCGATCAAGGAAGAAT+CGG | + | chr1_4:7446112-7446131 | None:intergenic | 40.0% | |
| CTTAATCGAATCGTCGATCA+AGG | + | chr1_4:7446121-7446140 | None:intergenic | 40.0% | |
| CTTGATCGACGATTCGATTA+AGG | - | chr1_4:7446119-7446138 | Msa0147510:three_prime_UTR | 40.0% | |
| CACAAACGCAAAATCGAAAC+TGG | + | chr1_4:7446154-7446173 | None:intergenic | 40.0% | |
| !! | GGGATCGGAAACTTGTTTTT+GGG | + | chr1_4:7446281-7446300 | None:intergenic | 40.0% |
| !! | TGGGATCGGAAACTTGTTTT+TGG | + | chr1_4:7446282-7446301 | None:intergenic | 40.0% |
| CTTAATGTGCGATTGATGTG+TGG | - | chr1_4:7446865-7446884 | Msa0147510:intron | 40.0% | |
| !! | TGGTGCTTTAAAGATCCGTT+TGG | - | chr1_4:7447110-7447129 | Msa0147510:CDS | 40.0% |
| ACTTCTCATGCAAGTGTTAC+TGG | - | chr1_4:7447294-7447313 | Msa0147510:intron | 40.0% | |
| TGAGAACTATCAGAGGAGTA+GGG | + | chr1_4:7447462-7447481 | None:intergenic | 40.0% | |
| TTGAGAACTATCAGAGGAGT+AGG | + | chr1_4:7447463-7447482 | None:intergenic | 40.0% | |
| ATAGTTCTCAAAGCAGCAAG+AGG | - | chr1_4:7447472-7447491 | Msa0147510:intron | 40.0% | |
| AAGCTTTCTCACCATGATCT+TGG | + | chr1_4:7447521-7447540 | None:intergenic | 40.0% | |
| ! | AATCCTTGTTTGGATTCCTC+AGG | + | chr1_4:7447666-7447685 | None:intergenic | 40.0% |
| CCCCAATTGAAATCCTTGTT+TGG | + | chr1_4:7447676-7447695 | None:intergenic | 40.0% | |
| GCTTTCTTAATACTGGGCAA+TGG | + | chr1_4:7447852-7447871 | None:intergenic | 40.0% | |
| GTCTCGGCTTTCTTAATACT+GGG | + | chr1_4:7447858-7447877 | None:intergenic | 40.0% | |
| ! | ATTTCCATGGAGCTGACTTA+GGG | + | chr1_4:7447880-7447899 | None:intergenic | 40.0% |
| ! | AATTTCCATGGAGCTGACTT+AGG | + | chr1_4:7447881-7447900 | None:intergenic | 40.0% |
| GGCAATGGTTTACAGACTTT+GGG | + | chr1_4:7447909-7447928 | None:intergenic | 40.0% | |
| !! | AGACAGTTGATGAAAGTCGA+AGG | - | chr1_4:7447967-7447986 | Msa0147510:intron | 40.0% |
| !! | AGTTGATGAAAGTCGAAGGA+TGG | - | chr1_4:7447971-7447990 | Msa0147510:intron | 40.0% |
| AATGCATATATGTCAGCCTC+AGG | + | chr1_4:7448173-7448192 | None:intergenic | 40.0% | |
| ! | AGTAGGTGTAGCTTTTAGCA+GGG | - | chr1_4:7448236-7448255 | Msa0147510:intron | 40.0% |
| AAAAGGGAAGCAACGAGACA+TGG | + | chr1_4:7446064-7446083 | None:intergenic | 45.0% | |
| TATACCCTGGAGGTGGAAAA+GGG | + | chr1_4:7446080-7446099 | None:intergenic | 45.0% | |
| ATATACCCTGGAGGTGGAAA+AGG | + | chr1_4:7446081-7446100 | None:intergenic | 45.0% | |
| GTATGCTTGATATACCCTGG+AGG | + | chr1_4:7446090-7446109 | None:intergenic | 45.0% | |
| TCGGTATGCTTGATATACCC+TGG | + | chr1_4:7446093-7446112 | None:intergenic | 45.0% | |
| GGAGCTTCTCCAAATCCAAA+CGG | + | chr1_4:7447128-7447147 | None:intergenic | 45.0% | |
| GAAGCTCCAGAAAGAAAGAG+AGG | - | chr1_4:7447140-7447159 | Msa0147510:CDS | 45.0% | |
| CCTTCTCCTCTCTTTCTTTC+TGG | + | chr1_4:7447149-7447168 | None:intergenic | 45.0% | |
| CCAGAAAGAAAGAGAGGAGA+AGG | - | chr1_4:7447146-7447165 | Msa0147510:CDS | 45.0% | |
| AAGAGAGGAGAAGGACAAGA+AGG | - | chr1_4:7447155-7447174 | Msa0147510:CDS | 45.0% | |
| !! | GCTGCTTTGAGAACTATCAG+AGG | + | chr1_4:7447469-7447488 | None:intergenic | 45.0% |
| CTCAAAGCAGCAAGAGGAAA+CGG | - | chr1_4:7447478-7447497 | Msa0147510:intron | 45.0% | |
| TCAAAGCAGCAAGAGGAAAC+GGG | - | chr1_4:7447479-7447498 | Msa0147510:intron | 45.0% | |
| GAGTTACCTAGCCAAGATCA+TGG | - | chr1_4:7447507-7447526 | Msa0147510:intron | 45.0% | |
| TTCTCACCATGATCTTGGCT+AGG | + | chr1_4:7447516-7447535 | None:intergenic | 45.0% | |
| GATGTTTCCTCAATGGAAGC+CGG | + | chr1_4:7447638-7447657 | None:intergenic | 45.0% | |
| GAACCTGAGGAATCCAAACA+AGG | - | chr1_4:7447660-7447679 | Msa0147510:intron | 45.0% | |
| ! | GAGTTGCAGATTTGCTTGCT+CGG | - | chr1_4:7447715-7447734 | Msa0147510:intron | 45.0% |
| ! | AGTTGCAGATTTGCTTGCTC+GGG | - | chr1_4:7447716-7447735 | Msa0147510:intron | 45.0% |
| GCAACACCAACACTTCTTGA+CGG | + | chr1_4:7447792-7447811 | None:intergenic | 45.0% | |
| ! | GTGTTGCAGATTTGCTTGCT+CGG | - | chr1_4:7447805-7447824 | Msa0147510:intron | 45.0% |
| ! | TGTTGCAGATTTGCTTGCTC+GGG | - | chr1_4:7447806-7447825 | Msa0147510:intron | 45.0% |
| GGTCTCGGCTTTCTTAATAC+TGG | + | chr1_4:7447859-7447878 | None:intergenic | 45.0% | |
| ! | CTTTGGGAGCAGAATTTCCA+TGG | + | chr1_4:7447893-7447912 | None:intergenic | 45.0% |
| CGGCAATGGTTTACAGACTT+TGG | + | chr1_4:7447910-7447929 | None:intergenic | 45.0% | |
| CTGTAAACCATTGCCGAATG+TGG | - | chr1_4:7447914-7447933 | Msa0147510:intron | 45.0% | |
| GCATCAACAGGAACCACATT+CGG | + | chr1_4:7447930-7447949 | None:intergenic | 45.0% | |
| TGGGTCCATTGGATCAAGAT+TGG | - | chr1_4:7448042-7448061 | Msa0147510:intron | 45.0% | |
| !! | GAGACGGGCATTGTTTGTTT+TGG | + | chr1_4:7448083-7448102 | None:intergenic | 45.0% |
| ! | CAGTAGGTGTAGCTTTTAGC+AGG | - | chr1_4:7448235-7448254 | Msa0147510:intron | 45.0% |
| ! | GTAGGTGTAGCTTTTAGCAG+GGG | - | chr1_4:7448237-7448256 | Msa0147510:intron | 45.0% |
| CATTCATCGGATACAACAGC+TGG | + | chr1_4:7448414-7448433 | None:intergenic | 45.0% | |
| !!! | AATATTTATTAATTATTTCT+TGG | - | chr1_4:7446483-7446502 | Msa0147510:CDS | 5.0% |
| TGCTTGATATACCCTGGAGG+TGG | + | chr1_4:7446087-7446106 | None:intergenic | 50.0% | |
| AGGAGAAGGACAAGAAGGAC+AGG | - | chr1_4:7447160-7447179 | Msa0147510:CDS | 50.0% | |
| GAGGGAGAAGAAGGAGAAGA+AGG | - | chr1_4:7447227-7447246 | Msa0147510:CDS | 50.0% | |
| AGACAGTGCGAAGTTGCGTA+AGG | - | chr1_4:7447356-7447375 | Msa0147510:intron | 50.0% | |
| TGAAAGGAGTGGCATTACCG+AGG | - | chr1_4:7447404-7447423 | Msa0147510:intron | 50.0% | |
| GACAGGTTGCTCAAGTTCCT+CGG | + | chr1_4:7447424-7447443 | None:intergenic | 50.0% | |
| CAAAGCAGCAAGAGGAAACG+GGG | - | chr1_4:7447480-7447499 | Msa0147510:intron | 50.0% | |
| CAATGGAAGCCGGATTCGAA+TGG | + | chr1_4:7447628-7447647 | None:intergenic | 50.0% | |
| TTCGAATCCGGCTTCCATTG+AGG | - | chr1_4:7447628-7447647 | Msa0147510:intron | 50.0% | |
| GGTTCGCGATGTTTCCTCAA+TGG | + | chr1_4:7447645-7447664 | None:intergenic | 50.0% | |
| ! | GGGTCATGTTCGAGAAGTGT+TGG | - | chr1_4:7447693-7447712 | Msa0147510:intron | 50.0% |
| ! | GAGACACCGTCAAGAAGTGT+TGG | - | chr1_4:7447783-7447802 | Msa0147510:intron | 50.0% |
| ! | ATGGAGCTGACTTAGGGTCT+CGG | + | chr1_4:7447874-7447893 | None:intergenic | 50.0% |
| ACAGGAACCACATTCGGCAA+TGG | + | chr1_4:7447924-7447943 | None:intergenic | 50.0% | |
| TCAGGCATATATTGAGCCCG+AGG | + | chr1_4:7448155-7448174 | None:intergenic | 50.0% | |
| TCGGGCTCAATATATGCCTG+AGG | - | chr1_4:7448154-7448173 | Msa0147510:intron | 50.0% | |
| ! | TGCTTCCCTTTTCCACCTCC+AGG | - | chr1_4:7446072-7446091 | Msa0147510:three_prime_UTR | 55.0% |
| ! | GCTTCCCTTTTCCACCTCCA+GGG | - | chr1_4:7446073-7446092 | Msa0147510:three_prime_UTR | 55.0% |
| CAGGAAAGCCGCTGAGAAAG+CGG | - | chr1_4:7447179-7447198 | Msa0147510:CDS | 55.0% | |
| ! | CTTCTTGGCCGCTTTCTCAG+CGG | + | chr1_4:7447190-7447209 | None:intergenic | 55.0% |
| AGAAAGCGGCCAAGAAGGAG+AGG | - | chr1_4:7447193-7447212 | Msa0147510:CDS | 55.0% | |
| CCTCTCCTTCCTCTCCTTCT+TGG | + | chr1_4:7447205-7447224 | None:intergenic | 55.0% | |
| CCAAGAAGGAGAGGAAGGAG+AGG | - | chr1_4:7447202-7447221 | Msa0147510:CDS | 55.0% | |
| AGAAGGAGAGGAAGGAGAGG+AGG | - | chr1_4:7447205-7447224 | Msa0147510:CDS | 55.0% | |
| GGCTCTTGAGGAGAACAGAC+AGG | + | chr1_4:7447441-7447460 | None:intergenic | 55.0% | |
| TCAGAGGAGTAGGGCTCTTG+AGG | + | chr1_4:7447453-7447472 | None:intergenic | 55.0% | |
| CAGGACCTGCCATTCGAATC+CGG | - | chr1_4:7447616-7447635 | Msa0147510:intron | 55.0% | |
| GAGGAAACATCGCGAACCTG+AGG | - | chr1_4:7447647-7447666 | Msa0147510:intron | 55.0% | |
| GAGACCCTAAGTCAGCTCCA+TGG | - | chr1_4:7447873-7447892 | Msa0147510:intron | 55.0% | |
| GCTGCTGCTACAGCATCAAC+AGG | + | chr1_4:7447942-7447961 | None:intergenic | 55.0% | |
| CGGATACAACAGCTGGTGTC+TGG | + | chr1_4:7448407-7448426 | None:intergenic | 55.0% | |
| CGCTGAGAAAGCGGCCAAGA+AGG | - | chr1_4:7447188-7447207 | Msa0147510:CDS | 60.0% | |
| AGCGGCCAAGAAGGAGAGGA+AGG | - | chr1_4:7447197-7447216 | Msa0147510:CDS | 60.0% | |
| AGGAGAGGAAGGAGAGGAGG+AGG | - | chr1_4:7447208-7447227 | Msa0147510:CDS | 60.0% | |
| GGAGAGGAAGGAGAGGAGGA+GGG | - | chr1_4:7447209-7447228 | Msa0147510:CDS | 60.0% | |
| GGAGAGGAGGAGGGAGAAGA+AGG | - | chr1_4:7447218-7447237 | Msa0147510:CDS | 60.0% | |
| GGAAGCCGGATTCGAATGGC+AGG | + | chr1_4:7447624-7447643 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 7445933 | 7448472 | 7445933 | ID=Msa0147510;Name=Msa0147510 |
| chr1_4 | mRNA | 7445933 | 7448472 | 7445933 | ID=Msa0147510-mRNA-1;Parent=Msa0147510;Name=Msa0147510-mRNA-1;_AED=0.21;_eAED=0.21;_QI=130|1|1|1|1|1|3|258|359 |
| chr1_4 | exon | 7445933 | 7446786 | 7445933 | ID=Msa0147510-mRNA-1:exon:3264;Parent=Msa0147510-mRNA-1 |
| chr1_4 | exon | 7446877 | 7447282 | 7446877 | ID=Msa0147510-mRNA-1:exon:3263;Parent=Msa0147510-mRNA-1 |
| chr1_4 | exon | 7448265 | 7448472 | 7448265 | ID=Msa0147510-mRNA-1:exon:3262;Parent=Msa0147510-mRNA-1 |
| chr1_4 | five_prime_UTR | 7448343 | 7448472 | 7448343 | ID=Msa0147510-mRNA-1:five_prime_utr;Parent=Msa0147510-mRNA-1 |
| chr1_4 | CDS | 7448265 | 7448342 | 7448265 | ID=Msa0147510-mRNA-1:cds;Parent=Msa0147510-mRNA-1 |
| chr1_4 | CDS | 7446877 | 7447282 | 7446877 | ID=Msa0147510-mRNA-1:cds;Parent=Msa0147510-mRNA-1 |
| chr1_4 | CDS | 7446191 | 7446786 | 7446191 | ID=Msa0147510-mRNA-1:cds;Parent=Msa0147510-mRNA-1 |
| chr1_4 | three_prime_UTR | 7445933 | 7446190 | 7445933 | ID=Msa0147510-mRNA-1:three_prime_utr;Parent=Msa0147510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
