AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380880 MtrunA17_Chr4g0048911 81.723 476 26 2 1 426 1 465 0.0 794
Msa1380880 MtrunA17_Chr6g0477111 45.226 398 162 3 87 428 2 399 3.36e-123 367
Msa1380880 MtrunA17_Chr3g0109031 43.932 412 174 4 74 428 13 424 1.77e-120 360
Msa1380880 MtrunA17_Chr3g0109021 43.932 412 174 4 74 428 13 424 5.52e-120 359
Msa1380880 MtrunA17_Chr3g0108981 44.862 399 163 4 87 428 2 400 7.58e-120 358
Msa1380880 MtrunA17_Chr3g0108961 44.862 399 163 4 87 428 2 400 7.58e-120 358
Msa1380880 MtrunA17_Chr3g0109001 42.958 426 184 5 60 428 2 425 1.57e-119 358
Msa1380880 MtrunA17_Chr3g0108941 44.068 413 173 5 74 428 13 425 2.76e-119 357
Msa1380880 MtrunA17_Chr3g0108991 42.892 415 180 4 74 431 13 427 1.03e-118 356
Msa1380880 MtrunA17_Chr3g0108951 42.892 415 180 4 74 431 13 427 1.03e-118 356
Msa1380880 MtrunA17_Chr3g0109011 44.221 398 166 3 87 428 2 399 1.26e-117 352
Msa1380880 MtrunA17_Chr3g0108971 43.860 399 168 3 87 429 2 400 1.27e-117 352
Msa1380880 MtrunA17_Chr3g0105691 43.204 412 177 4 74 428 46 457 3.08e-117 353
Msa1380880 MtrunA17_Chr3g0099031 43.059 425 184 4 60 428 2 424 5.97e-117 351
Msa1380880 MtrunA17_Chr2g0280581 41.943 422 187 4 63 426 5 426 3.40e-115 347
Msa1380880 MtrunA17_Chr4g0048921 42.336 411 177 5 66 422 65 469 1.08e-103 319
Msa1380880 MtrunA17_Chr6g0477121 46.547 333 122 3 152 428 10 342 4.09e-103 313
Msa1380880 MtrunA17_Chr2g0323151 34.367 387 192 4 89 422 4 381 6.36e-71 231
Msa1380880 MtrunA17_Chr4g0023911 35.194 412 211 10 65 422 71 480 1.33e-67 225
Msa1380880 MtrunA17_Chr4g0042111 31.863 408 218 7 71 422 58 461 2.48e-62 211
Msa1380880 MtrunA17_Chr2g0323131 30.717 446 250 9 27 422 30 466 2.88e-61 208
Msa1380880 MtrunA17_Chr2g0310331 33.333 387 200 5 89 422 105 486 8.56e-58 199
Msa1380880 MtrunA17_Chr2g0319051 30.414 411 228 6 71 426 10 417 2.32e-57 197
Msa1380880 MtrunA17_Chr8g0357411 29.216 421 238 5 55 421 74 488 2.06e-55 193
Msa1380880 MtrunA17_Chr6g0465851 28.501 407 224 7 87 433 31 430 1.01e-53 187
Msa1380880 MtrunA17_Chr6g0451711 26.667 420 245 6 72 433 55 469 1.09e-53 187
Msa1380880 MtrunA17_Chr6g0465911 28.501 407 224 7 87 433 66 465 2.41e-53 187
Msa1380880 MtrunA17_Chr2g0319041 28.235 425 243 10 60 426 40 460 5.02e-53 186
Msa1380880 MtrunA17_Chr6g0466051 28.256 407 225 7 87 433 66 465 9.46e-53 185
Msa1380880 MtrunA17_Chr6g0465441 28.440 436 242 10 61 433 37 465 1.10e-52 185
Msa1380880 MtrunA17_Chr5g0425371 27.543 403 229 5 89 433 68 465 2.81e-51 181
Msa1380880 MtrunA17_Chr3g0082691 27.569 399 232 3 84 426 59 456 2.63e-50 178
Msa1380880 MtrunA17_Chr5g0431651 27.529 425 236 6 64 422 33 451 2.64e-50 178
Msa1380880 MtrunA17_Chr7g0237011 26.980 404 230 5 89 433 13 410 4.07e-50 177
Msa1380880 MtrunA17_Chr7g0236961 26.980 404 230 5 89 433 13 410 4.80e-50 177
Msa1380880 MtrunA17_Chr3g0105071 27.692 390 218 4 91 422 73 456 5.18e-50 178
Msa1380880 MtrunA17_Chr4g0024691 27.970 404 235 4 72 422 60 460 5.58e-50 177
Msa1380880 MtrunA17_Chr5g0431571 28.710 411 225 5 78 426 48 452 2.49e-49 176
Msa1380880 MtrunA17_Chr4g0008621 28.101 395 219 9 49 384 37 425 6.34e-47 167
Msa1380880 MtrunA17_Chr2g0310401 43.434 198 112 0 225 422 135 332 1.23e-46 166
Msa1380880 MtrunA17_Chr7g0237001 27.475 404 228 8 89 433 68 465 5.99e-45 164
Msa1380880 MtrunA17_Chr7g0237041 27.475 404 228 8 89 433 68 465 5.99e-45 164
Msa1380880 MtrunA17_Chr7g0237081 27.475 404 228 8 89 433 68 465 5.99e-45 164
Msa1380880 MtrunA17_Chr7g0237051 27.475 404 228 8 89 433 68 465 5.99e-45 164
Msa1380880 MtrunA17_Chr7g0236991 27.475 404 228 8 89 433 68 465 6.76e-45 164
Msa1380880 MtrunA17_Chr6g0466111 30.952 294 140 4 87 323 31 318 5.72e-41 149
Msa1380880 MtrunA17_Chr6g0465931 30.952 294 140 4 87 323 31 318 6.02e-41 148
Msa1380880 MtrunA17_Chr6g0465981 30.952 294 140 4 87 323 66 353 1.34e-40 148
Msa1380880 MtrunA17_Chr6g0465871 30.952 294 140 4 87 323 66 353 1.34e-40 148
Msa1380880 MtrunA17_Chr6g0466081 30.952 294 140 4 87 323 66 353 1.34e-40 148
Msa1380880 MtrunA17_Chr7g0217361 37.681 207 112 5 225 422 11 209 1.68e-37 138
Msa1380880 MtrunA17_Chr8g0357231 40.881 159 91 2 265 421 1 158 3.27e-36 134
Msa1380880 MtrunA17_Chr7g0237031 30.479 292 140 7 89 323 13 298 2.06e-34 130
Msa1380880 MtrunA17_Chr7g0236951 30.479 292 140 7 89 323 13 298 2.94e-34 130
Msa1380880 MtrunA17_Chr7g0236971 29.858 211 146 1 225 433 103 313 1.25e-31 124
Msa1380880 MtrunA17_Chr2g0319081 29.665 209 145 2 225 432 140 347 7.16e-29 117
Msa1380880 MtrunA17_Chr8g0336181 31.604 212 142 2 217 426 249 459 1.90e-27 114
Msa1380880 MtrunA17_Chr8g0336181 36.232 138 78 3 71 204 51 182 1.02e-18 88.6
Msa1380880 MtrunA17_Chr7g0237061 29.412 170 116 1 265 434 2 167 7.00e-23 96.7
Msa1380880 MtrunA17_Chr5g0445511 26.383 235 118 3 171 352 2 234 1.49e-22 95.9
Msa1380880 MtrunA17_Chr6g0466031 29.070 172 118 3 265 433 2 172 1.89e-22 96.3
Msa1380880 MtrunA17_Chr6g0466021 36.879 141 79 3 87 223 66 200 3.32e-21 91.3
Msa1380880 MtrunA17_Chr4g0050281 61.194 67 24 1 7 71 37 103 1.35e-18 81.3
Msa1380880 MtrunA17_Chr7g0237071 33.871 124 73 2 89 208 13 131 1.56e-17 81.3
Msa1380880 MtrunA17_Chr2g0310121 27.225 191 137 2 235 424 492 681 6.64e-17 83.2
Msa1380880 MtrunA17_Chr3g0101681 26.316 190 138 2 235 423 493 681 2.51e-16 81.6
Msa1380880 MtrunA17_Chr2g0319071 38.333 120 68 1 89 208 46 159 9.65e-16 79.3
Msa1380880 MtrunA17_Chr2g0319071 28.244 131 90 3 298 426 264 392 2.57e-13 71.6
Msa1380880 MtrunA17_Chr2g0281651 26.733 202 141 5 225 424 68 264 5.26e-15 76.6
Msa1380880 MtrunA17_Chr8g0357221 28.402 169 115 3 55 223 74 236 1.31e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380880 AT1G61680.1 36.929 482 224 8 8 426 17 481 2.12e-102 316
Msa1380880 AT1G61680.2 36.307 482 220 9 8 426 17 474 2.94e-98 305
Msa1380880 AT4G16740.1 30.653 398 204 11 87 422 76 463 2.28e-49 176
Msa1380880 AT2G24210.1 28.507 442 244 11 56 433 66 499 6.72e-47 170
Msa1380880 AT4G16730.2 38.191 199 123 0 224 422 191 389 4.25e-44 161
Msa1380880 AT4G16730.2 37.374 99 59 2 91 189 1 96 2.51e-13 72.0
Msa1380880 AT4G16730.1 38.191 199 123 0 224 422 237 435 7.58e-44 161
Msa1380880 AT4G16730.1 32.117 137 84 3 76 206 26 159 1.38e-14 76.3
Msa1380880 AT3G25820.1 29.032 403 222 11 80 422 91 489 2.14e-39 149
Msa1380880 AT3G25830.1 29.032 403 222 11 80 422 91 489 2.14e-39 149
Msa1380880 AT3G25810.1 29.177 401 219 11 83 422 95 491 2.33e-39 149
Msa1380880 AT4G16740.2 28.793 323 162 7 87 348 76 391 1.14e-32 127
Msa1380880 AT1G33750.1 24.121 398 240 5 83 424 113 504 6.59e-32 128
Msa1380880 AT3G14520.1 21.981 414 264 7 65 422 92 502 1.40e-31 127
Msa1380880 AT3G29410.2 24.619 394 232 6 87 422 11 397 3.06e-29 119
Msa1380880 AT3G29410.1 24.760 416 241 8 72 422 94 502 3.85e-29 120
Msa1380880 AT5G48110.1 35.323 201 127 3 223 422 42 240 5.28e-28 114
Msa1380880 AT5G23960.1 25.598 418 244 11 65 422 37 447 9.90e-28 115
Msa1380880 AT1G70080.1 32.673 202 131 3 224 422 310 509 2.37e-27 115
Msa1380880 AT3G25820.2 27.353 340 186 9 80 361 91 427 6.80e-27 112
Msa1380880 AT2G23230.2 24.146 410 249 8 83 433 105 511 4.48e-26 111
Msa1380880 AT4G13300.1 23.969 388 235 8 91 422 69 452 2.71e-25 108
Msa1380880 AT2G23230.1 24.402 418 246 10 76 433 99 506 8.29e-25 107
Msa1380880 AT5G44630.1 24.190 401 240 9 79 422 63 456 1.36e-24 106
Msa1380880 AT4G20200.1 23.059 425 249 10 68 424 91 505 3.46e-23 102
Msa1380880 AT3G14540.1 20.241 415 270 8 65 422 89 499 7.64e-23 101
Msa1380880 AT4G16740.4 27.941 272 129 6 87 297 76 341 1.17e-22 99.4
Msa1380880 AT4G16740.3 27.941 272 129 6 87 297 76 341 1.17e-22 99.4
Msa1380880 AT4G20210.1 24.311 399 241 7 83 424 107 501 1.66e-22 100
Msa1380880 AT3G32030.1 20.241 415 269 7 67 422 91 502 3.44e-22 99.8
Msa1380880 AT5G23960.2 29.703 202 134 3 225 422 248 445 3.18e-21 96.7
Msa1380880 AT5G23960.2 31.544 149 101 1 65 213 37 184 3.98e-17 84.0
Msa1380880 AT1G79460.1 29.534 193 134 2 233 424 488 679 6.04e-21 96.3
Msa1380880 AT3G14490.1 26.263 198 145 1 225 422 303 499 7.37e-21 95.5
Msa1380880 AT1G31950.1 25.962 208 141 4 222 422 303 504 6.76e-20 92.8
Msa1380880 AT4G20230.1 22.977 383 236 7 98 424 126 505 6.76e-20 92.8
Msa1380880 AT4G20230.2 22.977 383 236 7 98 424 138 517 6.77e-20 92.8
Msa1380880 AT1G31950.3 25.962 208 141 4 222 422 304 505 6.95e-20 92.8
Msa1380880 AT1G31950.2 25.962 208 141 4 222 422 304 505 6.99e-20 92.4
Msa1380880 AT3G14540.2 25.616 203 148 3 222 422 298 499 5.18e-19 89.7
Msa1380880 AT3G29110.1 24.872 390 234 9 91 424 112 498 6.23e-19 89.7
Msa1380880 AT4G15870.1 30.244 205 129 4 222 424 306 498 6.67e-19 89.7
Msa1380880 AT3G25820.4 27.174 276 140 9 80 297 91 363 1.49e-16 81.6
Msa1380880 AT3G25820.3 27.174 276 140 9 80 297 91 363 1.49e-16 81.6
Msa1380880 AT3G29190.1 26.961 204 147 2 225 426 301 504 1.63e-16 82.4
Msa1380880 AT4G13280.2 27.723 202 143 2 223 422 252 452 3.55e-15 78.2
Msa1380880 AT1G48800.1 23.786 412 232 14 83 426 112 509 7.62e-15 77.0
Msa1380880 AT1G66020.1 27.228 202 145 2 225 424 298 499 3.37e-13 72.0
Msa1380880 AT1G61120.1 27.230 213 147 4 215 424 477 684 4.44e-13 72.0
Msa1380880 AT1G48820.1 24.082 245 161 6 183 424 242 464 2.00e-11 66.2

Find 142 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATACTCCTCTGAATT+TGG 0.087434 tig0020408:+93426 None:intergenic
AAACAAAAGCACAAATATTT+TGG 0.114515 tig0020408:-95890 Msa1380880:CDS
ATCACATAGCCTTAGAATTT+TGG 0.127459 tig0020408:+93278 None:intergenic
TATCATCAATGATGTATATT+AGG 0.172952 tig0020408:+93894 None:intergenic
ATACTCCTTGTTTGGTTGTT+TGG 0.215702 tig0020408:-92085 Msa1380880:three_prime_UTR
TTAATTCTACTTTAAAATAT+TGG 0.218641 tig0020408:-93205 Msa1380880:three_prime_UTR
TACTCCTTGTTTGGTTGTTT+GGG 0.231065 tig0020408:-92084 Msa1380880:three_prime_UTR
CCATCATAATTGTACATTAT+AGG 0.232144 tig0020408:+92365 None:intergenic
CGAGGATATAAATGGATTAA+TGG 0.243493 tig0020408:-94861 Msa1380880:CDS
GTGGTCCAATATTTATTCTT+TGG 0.249478 tig0020408:+93146 None:intergenic
ATTCAAGACAGTAGTTAAAT+TGG 0.250833 tig0020408:+95822 None:intergenic
GACCACGAGTACCATTTAAT+TGG 0.252942 tig0020408:+93980 None:intergenic
TTGTTTGGGAGCTGGGAATT+AGG 0.275658 tig0020408:-92070 Msa1380880:three_prime_UTR
CTTTCTTGCAAGAAGCAAAA+TGG 0.287959 tig0020408:-93467 Msa1380880:CDS
GAAGCAAAATGGTTTGCTTC+TGG 0.293280 tig0020408:-93456 Msa1380880:CDS
GTCCTTGATATTCATTTCTC+TGG 0.295905 tig0020408:+95467 None:intergenic
TTGTTTGGTTGTTTGGGAGC+TGG 0.298477 tig0020408:-92078 Msa1380880:three_prime_UTR
CTAGAGATGAACCAATTAAA+TGG 0.303622 tig0020408:-93991 Msa1380880:CDS
AGACAACACTATTGGTCTAT+TGG 0.313372 tig0020408:+92887 None:intergenic
GAAACTAGAATAGGCATGTT+TGG 0.319225 tig0020408:+95855 None:intergenic
TAACCAATGAATTTGCTCTT+AGG 0.320272 tig0020408:-93657 Msa1380880:CDS
CTTAGGTTTGGCAAAGGACT+TGG 0.338530 tig0020408:-94020 Msa1380880:CDS
TTTGGCTGTTGTAGATATAA+TGG 0.338929 tig0020408:+93296 None:intergenic
AAATCCAAAGCTTATTGTAT+TGG 0.348577 tig0020408:-96016 Msa1380880:five_prime_UTR
CTACAACAGCCAAAATTCTA+AGG 0.352122 tig0020408:-93287 Msa1380880:CDS
ATCATCAATGATGTATATTA+GGG 0.352665 tig0020408:+93895 None:intergenic
TGAGAAAACCGTGTCTCTAA+TGG 0.359133 tig0020408:-93331 Msa1380880:CDS
TACAGACGAATGTTTATCTA+TGG 0.359859 tig0020408:-95587 Msa1380880:CDS
GATAACCCAGGAGTTTCTAT+TGG 0.360210 tig0020408:-92515 Msa1380880:three_prime_UTR
ATGACCAGTCATTAAGATAT+TGG 0.361404 tig0020408:+94768 None:intergenic
TTTAACCTCATTAATAAAAT+CGG 0.373362 tig0020408:-93608 Msa1380880:intron
TGTTTGGTTGTTTGGGAGCT+GGG 0.377861 tig0020408:-92077 Msa1380880:three_prime_UTR
GGCACATTACTAATAATCTA+TGG 0.381390 tig0020408:-95962 Msa1380880:exon
GCTTCTCAATTGAGCATAGA+AGG 0.389737 tig0020408:-94827 Msa1380880:CDS
TGTGAGCTCAATCCTTTCTT+CGG 0.393162 tig0020408:+93928 None:intergenic
TGAAGAAAATGTTGAATGAT+TGG 0.395622 tig0020408:+95912 None:intergenic
ATGTGCCAAAGAATAAATAT+TGG 0.395885 tig0020408:-93151 Msa1380880:three_prime_UTR
TAGTGTTGTCTCAGATGATT+AGG 0.397016 tig0020408:-92875 Msa1380880:three_prime_UTR
ATAGTTCATGTATGTATTGC+GGG 0.400671 tig0020408:+93095 None:intergenic
GAAACCAATACAATAAGCTT+TGG 0.402507 tig0020408:+96012 None:intergenic
TCTTCGGAGAACTGTGGACC+TGG 0.403166 tig0020408:+93944 None:intergenic
GCATAGTAAGAATTATTACT+AGG 0.406892 tig0020408:-92762 Msa1380880:three_prime_UTR
CTGCAGAATGCTTTGATGTT+GGG 0.412622 tig0020408:+92267 None:intergenic
GTTTGTCCAATAGAAACTCC+TGG 0.424695 tig0020408:+92509 None:intergenic
GTGTACTCCAGTGCTTACTA+TGG 0.436836 tig0020408:+93398 None:intergenic
GTTAATTGTGAGGGTAATGA+TGG 0.436983 tig0020408:-92563 Msa1380880:three_prime_UTR
AAACTAGAATAGGCATGTTT+GGG 0.438056 tig0020408:+95856 None:intergenic
GTTTGGACGCAGATGGGACT+TGG 0.438150 tig0020408:-93737 Msa1380880:intron
TTAGTAAAAGATGATGGTAA+TGG 0.444587 tig0020408:+92416 None:intergenic
ATCATCTGAGACAACACTAT+TGG 0.447386 tig0020408:+92879 None:intergenic
TTTATTATAGAAACTAGAAT+AGG 0.448429 tig0020408:+95846 None:intergenic
CAAATTCATACTCCTAAAAG+TGG 0.456424 tig0020408:-95799 Msa1380880:CDS
TGCTGTATGAAGAAGATATA+TGG 0.466556 tig0020408:-92797 Msa1380880:three_prime_UTR
GTGTGGATATACTCCTTGTT+TGG 0.468711 tig0020408:-92093 Msa1380880:three_prime_UTR
GACTGGTCATCAACATTTCA+TGG 0.469127 tig0020408:-94755 Msa1380880:CDS
CTGCATGAAAGTGTGTTTCA+AGG 0.472196 tig0020408:-93692 Msa1380880:CDS
CATTAATCCATTTATATCCT+CGG 0.474307 tig0020408:+94862 None:intergenic
ATTAATGAAGTTAGAAACAT+AGG 0.477000 tig0020408:+93223 None:intergenic
TATAGATGGTGGAAAGACTT+AGG 0.478515 tig0020408:-94037 Msa1380880:intron
GACTCGGGTTCAGTAAAATC+AGG 0.478690 tig0020408:+92123 None:intergenic
TCAAACAAATCATGTATTGC+GGG 0.491332 tig0020408:-92672 Msa1380880:three_prime_UTR
GTGAAATCGTTGCTTTATGA+TGG 0.495348 tig0020408:-92314 Msa1380880:three_prime_UTR
AAACACACTTTCATGCAGTC+TGG 0.496127 tig0020408:+93697 None:intergenic
ATGGTGGAAAGACTTAGGTT+TGG 0.496137 tig0020408:-94032 Msa1380880:CDS
GTGAACAAATTTCAGATGCA+TGG 0.498506 tig0020408:-92472 Msa1380880:three_prime_UTR
TGGTCAATGGCATGTCTCCC+AGG 0.498526 tig0020408:-93962 Msa1380880:CDS
TCTAAGGCTATGTGATGACT+TGG 0.498674 tig0020408:-93271 Msa1380880:CDS
CATAGTAAGAATTATTACTA+GGG 0.499741 tig0020408:-92761 Msa1380880:three_prime_UTR
TGTCCTAAGAGCAAATTCAT+TGG 0.505116 tig0020408:+93654 None:intergenic
GTCCACAGTTCTCCGAAGAA+AGG 0.506139 tig0020408:-93940 Msa1380880:CDS
AGCATTGGATGAACTTAAGC+AGG 0.506378 tig0020408:-95635 Msa1380880:CDS
TATAAGACATGCAAAAGCAT+TGG 0.509430 tig0020408:-95650 Msa1380880:CDS
TTTCGTATGTTGAGACAAGA+AGG 0.509440 tig0020408:-95424 Msa1380880:CDS
CCTATAATGTACAATTATGA+TGG 0.511514 tig0020408:-92365 Msa1380880:three_prime_UTR
AGAATAGCATAGACACACTT+TGG 0.511989 tig0020408:-92046 Msa1380880:three_prime_UTR
TTCCAGAGAAATGAATATCA+AGG 0.522241 tig0020408:-95469 Msa1380880:CDS
ACTGCAGAATGCTTTGATGT+TGG 0.532928 tig0020408:+92266 None:intergenic
CCACTCTCAAGCGAAATTTG+TGG 0.534735 tig0020408:-94732 Msa1380880:CDS
GTGGATTCCATCAAAAGATT+AGG 0.535767 tig0020408:-95565 Msa1380880:CDS
TTTGTCCAATAGAAACTCCT+GGG 0.537264 tig0020408:+92510 None:intergenic
TATCCACACTTTATGTGACT+CGG 0.537819 tig0020408:+92107 None:intergenic
AGACGAATGTTTATCTATGG+TGG 0.538797 tig0020408:-95584 Msa1380880:CDS
ATCATGTATTGCGGGACGGA+GGG 0.538896 tig0020408:-92664 Msa1380880:three_prime_UTR
GCTGTTGTAGATATAATGGT+TGG 0.540737 tig0020408:+93300 None:intergenic
TAAATGGTACTCGTGGTCAA+TGG 0.541293 tig0020408:-93975 Msa1380880:CDS
CAAAGTTTAGTAAAAGATGA+TGG 0.541713 tig0020408:+92410 None:intergenic
AGATTATTAGTAATGTGCCT+TGG 0.543952 tig0020408:+95966 None:intergenic
AAGAATGCCATAGTAAGCAC+TGG 0.543981 tig0020408:-93405 Msa1380880:CDS
TTCCATCAAAAGATTAGGCA+TGG 0.555371 tig0020408:-95560 Msa1380880:CDS
GCATAGACACACTTTGGAAG+AGG 0.555805 tig0020408:-92040 Msa1380880:three_prime_UTR
TGCAGAATGCTTTGATGTTG+GGG 0.557340 tig0020408:+92268 None:intergenic
ATCCACACTTTATGTGACTC+GGG 0.559082 tig0020408:+92108 None:intergenic
TTGCGGGACGGAGGGAGTAG+TGG 0.560185 tig0020408:-92656 Msa1380880:three_prime_UTR
GTAATAATTTAGTATGATTG+TGG 0.560611 tig0020408:+93127 None:intergenic
CTGCAGGATGTTAATTGTGA+GGG 0.561151 tig0020408:-92572 Msa1380880:three_prime_UTR
CTTCGGAGAACTGTGGACCT+GGG 0.567196 tig0020408:+93945 None:intergenic
GAAGGGTATTACATTAGCCC+AGG 0.567931 tig0020408:-95406 Msa1380880:intron
GCTGCCAATATCTTAATGAC+TGG 0.568791 tig0020408:-94772 Msa1380880:CDS
TGTATGTATTGCGGGACGGA+GGG 0.569402 tig0020408:+93103 None:intergenic
TTGTCTCAATGCTGCACGGA+TGG 0.569745 tig0020408:-92390 Msa1380880:three_prime_UTR
TCCTAAAAGTGGAAAATGCA+AGG 0.571235 tig0020408:-95788 Msa1380880:intron
CCACAAATTTCGCTTGAGAG+TGG 0.573780 tig0020408:+94732 None:intergenic
AATAGTTCATGTATGTATTG+CGG 0.573838 tig0020408:+93094 None:intergenic
CTTAGGACATACATCAAACA+TGG 0.577045 tig0020408:-93640 Msa1380880:CDS
CTGTTGTAGATATAATGGTT+GGG 0.577593 tig0020408:+93301 None:intergenic
GAAGACTGTCTTGACAATGT+AGG 0.580932 tig0020408:-94803 Msa1380880:CDS
GTCAAACAAATCATGTATTG+CGG 0.583095 tig0020408:-92673 Msa1380880:three_prime_UTR
AAATCGTTGCTTTATGATGG+TGG 0.583566 tig0020408:-92311 Msa1380880:three_prime_UTR
AACTTTGTCTCAATGCTGCA+CGG 0.584173 tig0020408:-92394 Msa1380880:three_prime_UTR
ATCCTTTCTTCGGAGAACTG+TGG 0.586049 tig0020408:+93938 None:intergenic
TGGAAATGTTCCAAATTCAG+AGG 0.589748 tig0020408:-93436 Msa1380880:CDS
GGACATACATCAAACATGGA+TGG 0.590806 tig0020408:-93636 Msa1380880:CDS
AGCTCCCAAACAACCAAACA+AGG 0.596345 tig0020408:+92080 None:intergenic
AAATTGAAGCAACACTTGAA+AGG 0.596654 tig0020408:-95519 Msa1380880:CDS
AAAATTTGAGAAGGTCAAGT+GGG 0.600944 tig0020408:+93055 None:intergenic
CAATACTTCTTCAAAGCTAG+AGG 0.600961 tig0020408:-92342 Msa1380880:three_prime_UTR
CATCTCTCTTACTCAAACCA+AGG 0.603238 tig0020408:-95983 Msa1380880:five_prime_UTR
ACTGCAGGATGTTAATTGTG+AGG 0.605083 tig0020408:-92573 Msa1380880:three_prime_UTR
ATGTATGTATTGCGGGACGG+AGG 0.605733 tig0020408:+93102 None:intergenic
GCATTTACTAAGATTAAACA+TGG 0.607561 tig0020408:+93019 None:intergenic
AGTTTCTATTGGACAAACAA+AGG 0.608984 tig0020408:-92504 Msa1380880:three_prime_UTR
GAAAGACTTAGGTTTGGCAA+AGG 0.612512 tig0020408:-94026 Msa1380880:CDS
GAAACTCTTAAATCTAAGCA+TGG 0.613254 tig0020408:+95489 None:intergenic
AATCATGTATTGCGGGACGG+AGG 0.617010 tig0020408:-92665 Msa1380880:three_prime_UTR
TGATGACTTGGAAGGCGACA+AGG 0.619282 tig0020408:-93259 Msa1380880:CDS
TCTTTACAGATGCTGTTGAG+AGG 0.626983 tig0020408:-93835 Msa1380880:intron
ACAAACAAATAAAACTAACA+TGG 0.628841 tig0020408:-92625 Msa1380880:three_prime_UTR
AGGCTATGTGATGACTTGGA+AGG 0.633610 tig0020408:-93267 Msa1380880:CDS
AACCAATTAAATGGTACTCG+TGG 0.634167 tig0020408:-93982 Msa1380880:CDS
TTCGTATGTTGAGACAAGAA+GGG 0.638397 tig0020408:-95423 Msa1380880:CDS
ATGATGTATATTAGGGACAG+AGG 0.640251 tig0020408:+93902 None:intergenic
ACAAATCATGTATTGCGGGA+CGG 0.640721 tig0020408:-92668 Msa1380880:three_prime_UTR
TTCATGTATGTATTGCGGGA+CGG 0.643051 tig0020408:+93099 None:intergenic
GAAGTCATCCATTAGAGACA+CGG 0.643126 tig0020408:+93323 None:intergenic
AACCCGAGTCACATAAAGTG+TGG 0.643938 tig0020408:-92110 Msa1380880:three_prime_UTR
AAAGCGTAGTTACACGTCTG+TGG 0.648801 tig0020408:-92928 Msa1380880:three_prime_UTR
CAATTGAGAAGCTTCAAACA+AGG 0.656364 tig0020408:+94838 None:intergenic
ATAGTAAGAATTATTACTAG+GGG 0.658427 tig0020408:-92760 Msa1380880:three_prime_UTR
TGCATGGAAACAACTCAACA+AGG 0.663635 tig0020408:-92456 Msa1380880:three_prime_UTR
TTAATTGTGAGGGTAATGAT+GGG 0.700457 tig0020408:-92562 Msa1380880:three_prime_UTR
GACTTGGAAGGCGACAAGGT+AGG 0.702523 tig0020408:-93255 Msa1380880:CDS
TGTTACATGAAAGATAACCC+AGG 0.716647 tig0020408:-92527 Msa1380880:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATTGTTTGTTT+AGG - tig0020408:92648-92667 Msa1380880:three_prime_UTR 10.0%
!!! TTAATTCTACTTTAAAATAT+TGG - tig0020408:94737-94756 Msa1380880:CDS 10.0%
!! TTTATTATAGAAACTAGAAT+AGG + tig0020408:92099-92118 None:intergenic 15.0%
!!! AATTTTTATGAAAGTTAAGT+AGG + tig0020408:93407-93426 None:intergenic 15.0%
!!! TTTTTTCAAGAAAAAACAAA+TGG - tig0020408:93527-93546 Msa1380880:intron 15.0%
!!! TTTTTTTTTTAATGATTTGG+AGG + tig0020408:93728-93747 None:intergenic 15.0%
!!! GTTTAATTTTTATACATTGT+CGG + tig0020408:93824-93843 None:intergenic 15.0%
!!! GATGATATATTTGATTTTTA+TGG - tig0020408:94064-94083 Msa1380880:intron 15.0%
!!! TTTAATTTTTTATTTGAGTG+AGG + tig0020408:94146-94165 None:intergenic 15.0%
!!! GATTTTTTTTTTTACTAGAA+TGG + tig0020408:94169-94188 None:intergenic 15.0%
!! TTTAACCTCATTAATAAAAT+CGG - tig0020408:94334-94353 Msa1380880:intron 15.0%
!! TACTTAATTGTGATTAATTT+GGG - tig0020408:94417-94436 Msa1380880:intron 15.0%
!!! TTATTTTAAATAATTACTGC+AGG - tig0020408:95354-95373 Msa1380880:intron 15.0%
!!! GTTGATATTTTAATAAAATG+AGG - tig0020408:95962-95981 Msa1380880:exon 15.0%
!!! AAACAAAAGCACAAATATTT+TGG - tig0020408:92052-92071 Msa1380880:three_prime_UTR 20.0%
!!! TCTTTTTCTTTAGTTTCATA+TGG - tig0020408:92198-92217 Msa1380880:three_prime_UTR 20.0%
!! TCCTAAATGATTAATTGAAA+GGG + tig0020408:92263-92282 None:intergenic 20.0%
!! ATCCTAAATGATTAATTGAA+AGG + tig0020408:92264-92283 None:intergenic 20.0%
!!! ATTAGATTGGTTTTTAACTT+TGG - tig0020408:92605-92624 Msa1380880:three_prime_UTR 20.0%
!!! TTTTTTATCAAAATGACACA+TGG - tig0020408:93633-93652 Msa1380880:CDS 20.0%
!!! ATATGTATGACTTTAAAAGT+AGG + tig0020408:93767-93786 None:intergenic 20.0%
!! TGATGTAATCATTAGTAATA+CGG + tig0020408:93870-93889 None:intergenic 20.0%
!! GATTACATCATTTATAATCA+TGG - tig0020408:93880-93899 Msa1380880:CDS 20.0%
!! TTATAATCATGGTATATAGA+TGG - tig0020408:93891-93910 Msa1380880:CDS 20.0%
!! ATCATCAATGATGTATATTA+GGG + tig0020408:94050-94069 None:intergenic 20.0%
!! TATCATCAATGATGTATATT+AGG + tig0020408:94051-94070 None:intergenic 20.0%
!!! GATTTTATTAATGAGGTTAA+AGG + tig0020408:94335-94354 None:intergenic 20.0%
!!! CTATAAAGATTTAGAATGAA+GGG + tig0020408:94364-94383 None:intergenic 20.0%
!!! ACTATAAAGATTTAGAATGA+AGG + tig0020408:94365-94384 None:intergenic 20.0%
!! CTACTTAATTGTGATTAATT+TGG - tig0020408:94416-94435 Msa1380880:intron 20.0%
!! ATTAATGAAGTTAGAAACAT+AGG + tig0020408:94722-94741 None:intergenic 20.0%
!!! ATTTTTCTAGGGAATTTTTT+TGG + tig0020408:94773-94792 None:intergenic 20.0%
!! GTAATAATTTAGTATGATTG+TGG + tig0020408:94818-94837 None:intergenic 20.0%
!! CATAGTAAGAATTATTACTA+GGG - tig0020408:95181-95200 Msa1380880:intron 20.0%
!! ATAGTAAGAATTATTACTAG+GGG - tig0020408:95182-95201 Msa1380880:intron 20.0%
!!! TTTTCTTAATCTGTATGAAA+CGG - tig0020408:95247-95266 Msa1380880:intron 20.0%
!! ACAAACAAATAAAACTAACA+TGG - tig0020408:95317-95336 Msa1380880:intron 20.0%
!!! TTTTTGATACATTTTGAGTT+AGG - tig0020408:96026-96045 Msa1380880:five_prime_UTR 20.0%
! AAATCCAAAGCTTATTGTAT+TGG - tig0020408:91926-91945 Msa1380880:three_prime_UTR 25.0%
! TGAAGAAAATGTTGAATGAT+TGG + tig0020408:92033-92052 None:intergenic 25.0%
! ATTCAAGACAGTAGTTAAAT+TGG + tig0020408:92123-92142 None:intergenic 25.0%
! CTTAATTAGCTACAAGTTAA+TGG + tig0020408:92236-92255 None:intergenic 25.0%
! ACCCTTTCAATTAATCATTT+AGG - tig0020408:92259-92278 Msa1380880:three_prime_UTR 25.0%
! TTGAGTATAGAAAATTTGTG+AGG + tig0020408:92761-92780 None:intergenic 25.0%
!! TTTAGGATATCAACAATGTT+AGG + tig0020408:92845-92864 None:intergenic 25.0%
! CTTAGATAGGTATATGTAAT+TGG + tig0020408:92953-92972 None:intergenic 25.0%
! CATTAATCCATTTATATCCT+CGG + tig0020408:93083-93102 None:intergenic 25.0%
!!! CTTGACAAAGTTTTATGAAT+TGG + tig0020408:93253-93272 None:intergenic 25.0%
!! TTTTGTGATTGCATTATTGT+TGG + tig0020408:93283-93302 None:intergenic 25.0%
!!! GTACGTTTTTAAAAGATTCA+AGG - tig0020408:93428-93447 Msa1380880:CDS 25.0%
! GTATTTGATTCATTAACATG+TGG + tig0020408:93454-93473 None:intergenic 25.0%
! TTTCAAGAAAAAACAAATGG+CGG - tig0020408:93530-93549 Msa1380880:intron 25.0%
!! CTTAATAGCATTCTTTTGTT+TGG - tig0020408:94188-94207 Msa1380880:intron 25.0%
!!! GAATACCGATTTTATTAATG+AGG + tig0020408:94342-94361 None:intergenic 25.0%
! ATGTGCCAAAGAATAAATAT+TGG - tig0020408:94791-94810 Msa1380880:CDS 25.0%
! AATAGTTCATGTATGTATTG+CGG + tig0020408:94851-94870 None:intergenic 25.0%
! ATCTGCTTAAAAATTTGAGA+AGG + tig0020408:94899-94918 None:intergenic 25.0%
! GCATTTACTAAGATTAAACA+TGG + tig0020408:94926-94945 None:intergenic 25.0%
!! ATGCTTTTGTAAAACTTTTG+TGG - tig0020408:94942-94961 Msa1380880:intron 25.0%
!!! CTTACATACACTTTTTACAT+GGG + tig0020408:94969-94988 None:intergenic 25.0%
!!! TCTTACATACACTTTTTACA+TGG + tig0020408:94970-94989 None:intergenic 25.0%
!!! TATTCACGTTTTTCAATTCA+TGG + tig0020408:95123-95142 None:intergenic 25.0%
! GCATAGTAAGAATTATTACT+AGG - tig0020408:95180-95199 Msa1380880:intron 25.0%
!! TTAGTAAAAGATGATGGTAA+TGG + tig0020408:95529-95548 None:intergenic 25.0%
! CAAAGTTTAGTAAAAGATGA+TGG + tig0020408:95535-95554 None:intergenic 25.0%
! CCATCATAATTGTACATTAT+AGG + tig0020408:95580-95599 None:intergenic 25.0%
! CCTATAATGTACAATTATGA+TGG - tig0020408:95577-95596 Msa1380880:CDS 25.0%
GAAACCAATACAATAAGCTT+TGG + tig0020408:91933-91952 None:intergenic 30.0%
AGATTATTAGTAATGTGCCT+TGG + tig0020408:91979-91998 None:intergenic 30.0%
GGCACATTACTAATAATCTA+TGG - tig0020408:91980-91999 Msa1380880:three_prime_UTR 30.0%
AAACTAGAATAGGCATGTTT+GGG + tig0020408:92089-92108 None:intergenic 30.0%
CAAATTCATACTCCTAAAAG+TGG - tig0020408:92143-92162 Msa1380880:three_prime_UTR 30.0%
! TATAAGACATGCAAAAGCAT+TGG - tig0020408:92292-92311 Msa1380880:three_prime_UTR 30.0%
TACAGACGAATGTTTATCTA+TGG - tig0020408:92355-92374 Msa1380880:three_prime_UTR 30.0%
AAATTGAAGCAACACTTGAA+AGG - tig0020408:92423-92442 Msa1380880:three_prime_UTR 30.0%
GAAACTCTTAAATCTAAGCA+TGG + tig0020408:92456-92475 None:intergenic 30.0%
TTCCAGAGAAATGAATATCA+AGG - tig0020408:92473-92492 Msa1380880:three_prime_UTR 30.0%
CCAATCTAATCAATGTAGAT+TGG + tig0020408:92595-92614 None:intergenic 30.0%
! CCAATCTACATTGATTAGAT+TGG - tig0020408:92592-92611 Msa1380880:three_prime_UTR 30.0%
AAAAACAAGGTCATTGTCAT+GGG + tig0020408:92993-93012 None:intergenic 30.0%
AAAAAACAAGGTCATTGTCA+TGG + tig0020408:92994-93013 None:intergenic 30.0%
!! GATAAGTTTTGTGACAACAA+AGG - tig0020408:93037-93056 Msa1380880:three_prime_UTR 30.0%
! ACATTTTCCGAGGATATAAA+TGG - tig0020408:93073-93092 Msa1380880:three_prime_UTR 30.0%
!! CGAGGATATAAATGGATTAA+TGG - tig0020408:93081-93100 Msa1380880:three_prime_UTR 30.0%
ATGACCAGTCATTAAGATAT+TGG + tig0020408:93177-93196 None:intergenic 30.0%
TTTATGAATTGGATACGTCA+AGG + tig0020408:93242-93261 None:intergenic 30.0%
TTCAGAAATAGACACTCAAA+TGG - tig0020408:93333-93352 Msa1380880:CDS 30.0%
TAATCATGGTATATAGATGG+TGG - tig0020408:93894-93913 Msa1380880:CDS 30.0%
CTAGAGATGAACCAATTAAA+TGG - tig0020408:93951-93970 Msa1380880:CDS 30.0%
! TAACCAATGAATTTGCTCTT+AGG - tig0020408:94285-94304 Msa1380880:intron 30.0%
GAAGATAGTATGTTACACAT+AGG + tig0020408:94397-94416 None:intergenic 30.0%
TGGGTGTTAATTAATTACAG+TGG - tig0020408:94436-94455 Msa1380880:intron 30.0%
GGGTGTTAATTAATTACAGT+GGG - tig0020408:94437-94456 Msa1380880:intron 30.0%
TTCAAATACTCCTCTGAATT+TGG + tig0020408:94519-94538 None:intergenic 30.0%
CTGTTGTAGATATAATGGTT+GGG + tig0020408:94644-94663 None:intergenic 30.0%
TTTGGCTGTTGTAGATATAA+TGG + tig0020408:94649-94668 None:intergenic 30.0%
!! ATCACATAGCCTTAGAATTT+TGG + tig0020408:94667-94686 None:intergenic 30.0%
! TTCTTTGGCACATTTTTCTA+GGG + tig0020408:94784-94803 None:intergenic 30.0%
! ATTCTTTGGCACATTTTTCT+AGG + tig0020408:94785-94804 None:intergenic 30.0%
GTGGTCCAATATTTATTCTT+TGG + tig0020408:94799-94818 None:intergenic 30.0%
ATAGTTCATGTATGTATTGC+GGG + tig0020408:94850-94869 None:intergenic 30.0%
AAAATTTGAGAAGGTCAAGT+GGG + tig0020408:94890-94909 None:intergenic 30.0%
AAAAATTTGAGAAGGTCAAG+TGG + tig0020408:94891-94910 None:intergenic 30.0%
TGCTGTATGAAGAAGATATA+TGG - tig0020408:95145-95164 Msa1380880:intron 30.0%
GTCAAACAAATCATGTATTG+CGG - tig0020408:95269-95288 Msa1380880:intron 30.0%
TCAAACAAATCATGTATTGC+GGG - tig0020408:95270-95289 Msa1380880:intron 30.0%
TTAATTGTGAGGGTAATGAT+GGG - tig0020408:95380-95399 Msa1380880:intron 30.0%
AGTTTCTATTGGACAAACAA+AGG - tig0020408:95438-95457 Msa1380880:CDS 30.0%
GAAACTAGAATAGGCATGTT+TGG + tig0020408:92090-92109 None:intergenic 35.0%
TCCTAAAAGTGGAAAATGCA+AGG - tig0020408:92154-92173 Msa1380880:three_prime_UTR 35.0%
!! ACCTTGCATTTTCCACTTTT+AGG + tig0020408:92158-92177 None:intergenic 35.0%
AGACGAATGTTTATCTATGG+TGG - tig0020408:92358-92377 Msa1380880:three_prime_UTR 35.0%
GTGGATTCCATCAAAAGATT+AGG - tig0020408:92377-92396 Msa1380880:three_prime_UTR 35.0%
TTCCATCAAAAGATTAGGCA+TGG - tig0020408:92382-92401 Msa1380880:three_prime_UTR 35.0%
!! CATGGAGTACAATTTTGAAG+AGG - tig0020408:92400-92419 Msa1380880:three_prime_UTR 35.0%
GTCCTTGATATTCATTTCTC+TGG + tig0020408:92478-92497 None:intergenic 35.0%
TTTCGTATGTTGAGACAAGA+AGG - tig0020408:92518-92537 Msa1380880:three_prime_UTR 35.0%
TTCGTATGTTGAGACAAGAA+GGG - tig0020408:92519-92538 Msa1380880:three_prime_UTR 35.0%
ACTTGAAAGCAAACTAACCT+GGG + tig0020408:92556-92575 None:intergenic 35.0%
TACTTGAAAGCAAACTAACC+TGG + tig0020408:92557-92576 None:intergenic 35.0%
!! AGGTTAGTTTGCTTTCAAGT+AGG - tig0020408:92556-92575 Msa1380880:three_prime_UTR 35.0%
TTGTCTAATAGAAACCCATG+TGG - tig0020408:92789-92808 Msa1380880:three_prime_UTR 35.0%
!!! AGTGCTGTGTGACTTTTTTT+AGG - tig0020408:92814-92833 Msa1380880:three_prime_UTR 35.0%
ACATCATGCATCACTTAGAT+AGG + tig0020408:92966-92985 None:intergenic 35.0%
AAAACAAGGTCATTGTCATG+GGG + tig0020408:92992-93011 None:intergenic 35.0%
TAAGATGCAGCGAAAAAACA+AGG + tig0020408:93006-93025 None:intergenic 35.0%
CAATTGAGAAGCTTCAAACA+AGG + tig0020408:93107-93126 None:intergenic 35.0%
AGTTAAGTAGGACTCTTACT+TGG + tig0020408:93395-93414 None:intergenic 35.0%
!! TATAGATGGTGGAAAGACTT+AGG - tig0020408:93905-93924 Msa1380880:CDS 35.0%
AACCAATTAAATGGTACTCG+TGG - tig0020408:93960-93979 Msa1380880:CDS 35.0%
ATGATGTATATTAGGGACAG+AGG + tig0020408:94043-94062 None:intergenic 35.0%
TGTCCTAAGAGCAAATTCAT+TGG + tig0020408:94291-94310 None:intergenic 35.0%
CTTAGGACATACATCAAACA+TGG - tig0020408:94302-94321 Msa1380880:intron 35.0%
CTTTCTTGCAAGAAGCAAAA+TGG - tig0020408:94475-94494 Msa1380880:intron 35.0%
TGGAAATGTTCCAAATTCAG+AGG - tig0020408:94506-94525 Msa1380880:intron 35.0%
GCTGTTGTAGATATAATGGT+TGG + tig0020408:94645-94664 None:intergenic 35.0%
CTACAACAGCCAAAATTCTA+AGG - tig0020408:94655-94674 Msa1380880:intron 35.0%
!!! GGGAATTTTTTTGGTACATG+TGG + tig0020408:94764-94783 None:intergenic 35.0%
! AGACAACACTATTGGTCTAT+TGG + tig0020408:95058-95077 None:intergenic 35.0%
! ATCATCTGAGACAACACTAT+TGG + tig0020408:95066-95085 None:intergenic 35.0%
TAGTGTTGTCTCAGATGATT+AGG - tig0020408:95067-95086 Msa1380880:intron 35.0%
GTTAATTGTGAGGGTAATGA+TGG - tig0020408:95379-95398 Msa1380880:intron 35.0%
TGTTACATGAAAGATAACCC+AGG - tig0020408:95415-95434 Msa1380880:CDS 35.0%
TTTGTCCAATAGAAACTCCT+GGG + tig0020408:95435-95454 None:intergenic 35.0%
GTGAACAAATTTCAGATGCA+TGG - tig0020408:95470-95489 Msa1380880:CDS 35.0%
CAATACTTCTTCAAAGCTAG+AGG - tig0020408:95600-95619 Msa1380880:CDS 35.0%
! GTGAAATCGTTGCTTTATGA+TGG - tig0020408:95628-95647 Msa1380880:CDS 35.0%
! AAATCGTTGCTTTATGATGG+TGG - tig0020408:95631-95650 Msa1380880:CDS 35.0%
TATCCACACTTTATGTGACT+CGG + tig0020408:95838-95857 None:intergenic 35.0%
! ATACTCCTTGTTTGGTTGTT+TGG - tig0020408:95857-95876 Msa1380880:CDS 35.0%
! TACTCCTTGTTTGGTTGTTT+GGG - tig0020408:95858-95877 Msa1380880:CDS 35.0%
AGAATAGCATAGACACACTT+TGG - tig0020408:95896-95915 Msa1380880:CDS 35.0%
CATCTCTCTTACTCAAACCA+AGG - tig0020408:91959-91978 Msa1380880:three_prime_UTR 40.0%
! AGCATTGGATGAACTTAAGC+AGG - tig0020408:92307-92326 Msa1380880:three_prime_UTR 40.0%
! CTCCATGCCTAATCTTTTGA+TGG + tig0020408:92387-92406 None:intergenic 40.0%
! ACTCAAGCATACATTTTCCG+AGG - tig0020408:93063-93082 Msa1380880:three_prime_UTR 40.0%
GCTTCTCAATTGAGCATAGA+AGG - tig0020408:93115-93134 Msa1380880:three_prime_UTR 40.0%
GAAGACTGTCTTGACAATGT+AGG - tig0020408:93139-93158 Msa1380880:three_prime_UTR 40.0%
GCTGCCAATATCTTAATGAC+TGG - tig0020408:93170-93189 Msa1380880:three_prime_UTR 40.0%
! GACTGGTCATCAACATTTCA+TGG - tig0020408:93187-93206 Msa1380880:three_prime_UTR 40.0%
TGCAATCACAAAATGCAGCA+TGG - tig0020408:93290-93309 Msa1380880:CDS 40.0%
GGTTTCATCATCACATCTCA+AGG - tig0020408:93354-93373 Msa1380880:CDS 40.0%
! ATGGTGGAAAGACTTAGGTT+TGG - tig0020408:93910-93929 Msa1380880:CDS 40.0%
GAAAGACTTAGGTTTGGCAA+AGG - tig0020408:93916-93935 Msa1380880:CDS 40.0%
GACCACGAGTACCATTTAAT+TGG + tig0020408:93965-93984 None:intergenic 40.0%
TAAATGGTACTCGTGGTCAA+TGG - tig0020408:93967-93986 Msa1380880:CDS 40.0%
TGTGAGCTCAATCCTTTCTT+CGG + tig0020408:94017-94036 None:intergenic 40.0%
TCTTTACAGATGCTGTTGAG+AGG - tig0020408:94107-94126 Msa1380880:intron 40.0%
!! TTCTTTTGTTTGGACGCAGA+TGG - tig0020408:94198-94217 Msa1380880:intron 40.0%
!! TCTTTTGTTTGGACGCAGAT+GGG - tig0020408:94199-94218 Msa1380880:intron 40.0%
AAACACACTTTCATGCAGTC+TGG + tig0020408:94248-94267 None:intergenic 40.0%
! CTGCATGAAAGTGTGTTTCA+AGG - tig0020408:94250-94269 Msa1380880:intron 40.0%
GGACATACATCAAACATGGA+TGG - tig0020408:94306-94325 Msa1380880:intron 40.0%
!! GAAGCAAAATGGTTTGCTTC+TGG - tig0020408:94486-94505 Msa1380880:intron 40.0%
AAGAATGCCATAGTAAGCAC+TGG - tig0020408:94537-94556 Msa1380880:intron 40.0%
! TGTGCATGCTTTCTTTTGCA+TGG - tig0020408:94575-94594 Msa1380880:intron 40.0%
! GTGCATGCTTTCTTTTGCAT+GGG - tig0020408:94576-94595 Msa1380880:intron 40.0%
TGAGAAAACCGTGTCTCTAA+TGG - tig0020408:94611-94630 Msa1380880:intron 40.0%
GAAGTCATCCATTAGAGACA+CGG + tig0020408:94622-94641 None:intergenic 40.0%
! TCTAAGGCTATGTGATGACT+TGG - tig0020408:94671-94690 Msa1380880:intron 40.0%
TTCATGTATGTATTGCGGGA+CGG + tig0020408:94846-94865 None:intergenic 40.0%
ACAAATCATGTATTGCGGGA+CGG - tig0020408:95274-95293 Msa1380880:intron 40.0%
ACTGCAGGATGTTAATTGTG+AGG - tig0020408:95369-95388 Msa1380880:intron 40.0%
CTGCAGGATGTTAATTGTGA+GGG - tig0020408:95370-95389 Msa1380880:intron 40.0%
GATAACCCAGGAGTTTCTAT+TGG - tig0020408:95427-95446 Msa1380880:CDS 40.0%
GTTTGTCCAATAGAAACTCC+TGG + tig0020408:95436-95455 None:intergenic 40.0%
TGCATGGAAACAACTCAACA+AGG - tig0020408:95486-95505 Msa1380880:CDS 40.0%
AACTTTGTCTCAATGCTGCA+CGG - tig0020408:95548-95567 Msa1380880:CDS 40.0%
TGCAGAATGCTTTGATGTTG+GGG + tig0020408:95677-95696 None:intergenic 40.0%
CTGCAGAATGCTTTGATGTT+GGG + tig0020408:95678-95697 None:intergenic 40.0%
ACTGCAGAATGCTTTGATGT+TGG + tig0020408:95679-95698 None:intergenic 40.0%
ATCCACACTTTATGTGACTC+GGG + tig0020408:95837-95856 None:intergenic 40.0%
GTGTGGATATACTCCTTGTT+TGG - tig0020408:95849-95868 Msa1380880:CDS 40.0%
!! GAAGGGTATTACATTAGCCC+AGG - tig0020408:92536-92555 Msa1380880:three_prime_UTR 45.0%
CCACAAATTTCGCTTGAGAG+TGG + tig0020408:93213-93232 None:intergenic 45.0%
CCACTCTCAAGCGAAATTTG+TGG - tig0020408:93210-93229 Msa1380880:three_prime_UTR 45.0%
! GGAGCTCTAGTGTATCAAAC+TGG - tig0020408:93580-93599 Msa1380880:intron 45.0%
CTTAGGTTTGGCAAAGGACT+TGG - tig0020408:93922-93941 Msa1380880:CDS 45.0%
ATCCTTTCTTCGGAGAACTG+TGG + tig0020408:94007-94026 None:intergenic 45.0%
GTGTACTCCAGTGCTTACTA+TGG + tig0020408:94547-94566 None:intergenic 45.0%
! GCTTTCTTTTGCATGGGTCA+AGG - tig0020408:94582-94601 Msa1380880:intron 45.0%
! AGGCTATGTGATGACTTGGA+AGG - tig0020408:94675-94694 Msa1380880:intron 45.0%
AAAGCGTAGTTACACGTCTG+TGG - tig0020408:95014-95033 Msa1380880:intron 45.0%
GACTCGGGTTCAGTAAAATC+AGG + tig0020408:95822-95841 None:intergenic 45.0%
AACCCGAGTCACATAAAGTG+TGG - tig0020408:95832-95851 Msa1380880:CDS 45.0%
AGCTCCCAAACAACCAAACA+AGG + tig0020408:95865-95884 None:intergenic 45.0%
TTGTTTGGTTGTTTGGGAGC+TGG - tig0020408:95864-95883 Msa1380880:CDS 45.0%
TGTTTGGTTGTTTGGGAGCT+GGG - tig0020408:95865-95884 Msa1380880:CDS 45.0%
TTGTTTGGGAGCTGGGAATT+AGG - tig0020408:95872-95891 Msa1380880:CDS 45.0%
! GCATAGACACACTTTGGAAG+AGG - tig0020408:95902-95921 Msa1380880:CDS 45.0%
!!! TTTTAAGTTATTAATATTTT+AGG + tig0020408:92862-92881 None:intergenic 5.0%
!!! ATAAAAAATAGAAATTTTTT+TGG + tig0020408:93606-93625 None:intergenic 5.0%
!!! AATTTTTTTTTTTAATGATT+TGG + tig0020408:93731-93750 None:intergenic 5.0%
TCACACAGCACTTGCCACAT+GGG + tig0020408:92806-92825 None:intergenic 50.0%
GTCCACAGTTCTCCGAAGAA+AGG - tig0020408:94002-94021 Msa1380880:CDS 50.0%
! TGATGACTTGGAAGGCGACA+AGG - tig0020408:94683-94702 Msa1380880:intron 50.0%
TGTATGTATTGCGGGACGGA+GGG + tig0020408:94842-94861 None:intergenic 50.0%
ATGTATGTATTGCGGGACGG+AGG + tig0020408:94843-94862 None:intergenic 50.0%
AATCATGTATTGCGGGACGG+AGG - tig0020408:95277-95296 Msa1380880:intron 50.0%
ATCATGTATTGCGGGACGGA+GGG - tig0020408:95278-95297 Msa1380880:intron 50.0%
TTGTCTCAATGCTGCACGGA+TGG - tig0020408:95552-95571 Msa1380880:CDS 50.0%
GTCACACAGCACTTGCCACA+TGG + tig0020408:92807-92826 None:intergenic 55.0%
TGGTCAATGGCATGTCTCCC+AGG - tig0020408:93980-93999 Msa1380880:CDS 55.0%
CTTCGGAGAACTGTGGACCT+GGG + tig0020408:94000-94019 None:intergenic 55.0%
TCTTCGGAGAACTGTGGACC+TGG + tig0020408:94001-94020 None:intergenic 55.0%
GTTTGGACGCAGATGGGACT+TGG - tig0020408:94205-94224 Msa1380880:intron 55.0%
GACTTGGAAGGCGACAAGGT+AGG - tig0020408:94687-94706 Msa1380880:intron 55.0%
! CAAATGGCGGAACCCCTTCC+CGG - tig0020408:93543-93562 Msa1380880:intron 60.0%
CTAGAGCTCCCGCATACGCA+GGG + tig0020408:93570-93589 None:intergenic 60.0%
ACTAGAGCTCCCGCATACGC+AGG + tig0020408:93571-93590 None:intergenic 60.0%
CATACGCAGGGTCCGGGAAG+GGG + tig0020408:93558-93577 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + tig0020408:93559-93578 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - tig0020408:93558-93577 Msa1380880:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - tig0020408:93559-93578 Msa1380880:intron 65.0%
TTGCGGGACGGAGGGAGTAG+TGG - tig0020408:95286-95305 Msa1380880:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + tig0020408:93560-93579 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + tig0020408:93564-93583 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + tig0020408:93565-93584 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020408 gene 91899 96065 91899 ID=Msa1380880;Name=Msa1380880
tig0020408 mRNA 91899 96065 91899 ID=Msa1380880-mRNA-1;Parent=Msa1380880;Name=Msa1380880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=100|0.8|0.83|1|1|1|6|1334|434
tig0020408 exon 91899 93508 91899 ID=Msa1380880-mRNA-1:exon:7270;Parent=Msa1380880-mRNA-1
tig0020408 exon 93609 93747 93609 ID=Msa1380880-mRNA-1:exon:7269;Parent=Msa1380880-mRNA-1
tig0020408 exon 93836 94054 93836 ID=Msa1380880-mRNA-1:exon:7268;Parent=Msa1380880-mRNA-1
tig0020408 exon 94719 94935 94719 ID=Msa1380880-mRNA-1:exon:7267;Parent=Msa1380880-mRNA-1
tig0020408 exon 95407 95683 95407 ID=Msa1380880-mRNA-1:exon:7266;Parent=Msa1380880-mRNA-1
tig0020408 exon 95789 96065 95789 ID=Msa1380880-mRNA-1:exon:7265;Parent=Msa1380880-mRNA-1
tig0020408 five_prime_UTR 95966 96065 95966 ID=Msa1380880-mRNA-1:five_prime_utr;Parent=Msa1380880-mRNA-1
tig0020408 CDS 95789 95965 95789 ID=Msa1380880-mRNA-1:cds;Parent=Msa1380880-mRNA-1
tig0020408 CDS 95407 95683 95407 ID=Msa1380880-mRNA-1:cds;Parent=Msa1380880-mRNA-1
tig0020408 CDS 94719 94935 94719 ID=Msa1380880-mRNA-1:cds;Parent=Msa1380880-mRNA-1
tig0020408 CDS 93836 94054 93836 ID=Msa1380880-mRNA-1:cds;Parent=Msa1380880-mRNA-1
tig0020408 CDS 93609 93747 93609 ID=Msa1380880-mRNA-1:cds;Parent=Msa1380880-mRNA-1
tig0020408 CDS 93233 93508 93233 ID=Msa1380880-mRNA-1:cds;Parent=Msa1380880-mRNA-1
tig0020408 three_prime_UTR 91899 93232 91899 ID=Msa1380880-mRNA-1:three_prime_utr;Parent=Msa1380880-mRNA-1
Gene Sequence

>Msa1380880

ATGGCTTTTTCTCTTTCTTTCGCTGCTTCAACCAATCATTCAACATTTTCTTCAAACAAAAGCACAAATATTTTGGATATATCTATACCCAAACATGCCTATTCTAGTTTCTATAATAAAACCAATTTAACTACTGTCTTGAATCAAATTCATACTCCTAAAAGTGGAAAATGCAAGGATGATCTTCATATAAGACATGCAAAAGCATTGGATGAACTTAAGCAGGTATTTGTTAGAGATATAAGAAAAAATACAGACGAATGTTTATCTATGGTGGATTCCATCAAAAGATTAGGCATGGAGTACAATTTTGAAGAGGAAATTGAAGCAACACTTGAAAGGAAACACACCATGCTTAGATTTAAGAGTTTCCAGAGAAATGAATATCAAGGACTGTCACAAGCTGCATTTCAATTTCGTATGTTGAGACAAGAAGGGTATTACATTAGCCCAGACATATTTGATAAGTTTTGTGACAACAAAGGAAAACTCAAGCATACATTTTCCGAGGATATAAATGGATTAATGGCCTTGTTTGAAGCTTCTCAATTGAGCATAGAAGGAGAAGACTGTCTTGACAATGTAGGACAGTTCTGCTGCCAATATCTTAATGACTGGTCATCAACATTTCATGGCCACTCTCAAGCGAAATTTGTGGCACACACCTTGACATGGTGGAAAGACTTAGGTTTGGCAAAGGACTTGGAATTTGCTAGAGATGAACCAATTAAATGGTACTCGTGGTCAATGGCATGTCTCCCAGGTCCACAGTTCTCCGAAGAAAGGATTGAGCTCACAAAACCTCTGTCCCTAATATACATCATTGATGATATATTTGATTTTTATGGAAACATTGAAGAACTTACTCTCTTTACAGATGCTGTTGAGAGATGGGACTTGGCAGCTATTGAACAATTACCAGACTGCATGAAAGTGTGTTTCAAGGCTCTCTATGACATAACCAATGAATTTGCTCTTAGGACATACATCAAACATGGATGGAATCCTTTAACCTCATTAATAAAATCGTGGGTAAGACTCATGAATGCTTTCTTGCAAGAAGCAAAATGGTTTGCTTCTGGAAATGTTCCAAATTCAGAGGAGTATTTGAAGAATGCCATAGTAAGCACTGGAGTACACGTGATACTTGTGCATGCTTTCTTTTGCATGGGTCAAGGTATAACTGAGAAAACCGTGTCTCTAATGGATGACTTCCCAACCATTATATCTACAACAGCCAAAATTCTAAGGCTATGTGATGACTTGGAAGGCGACAAGGTAGGAAAACATCACCTATGTTTCTAA
Protein sequence

>Msa1380880

MAFSLSFAASTNHSTFSSNKSTNILDISIPKHAYSSFYNKTNLTTVLNQIHTPKSGKCKDDLHIRHAKALDELKQVFVRDIRKNTDECLSMVDSIKRLGMEYNFEEEIEATLERKHTMLRFKSFQRNEYQGLSQAAFQFRMLRQEGYYISPDIFDKFCDNKGKLKHTFSEDINGLMALFEASQLSIEGEDCLDNVGQFCCQYLNDWSSTFHGHSQAKFVAHTLTWWKDLGLAKDLEFARDEPIKWYSWSMACLPGPQFSEERIELTKPLSLIYIIDDIFDFYGNIEELTLFTDAVERWDLAAIEQLPDCMKVCFKALYDITNEFALRTYIKHGWNPLTSLIKSWVRLMNAFLQEAKWFASGNVPNSEEYLKNAIVSTGVHVILVHAFFCMGQGITEKTVSLMDDFPTIISTTAKILRLCDDLEGDKVGKHHLCF*