Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381170 | KEH27287.1 | 98.333 | 60 | 1 | 0 | 14 | 73 | 599 | 658 | 1.75e-29 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381170 | A0A072UCF1 | 98.333 | 60 | 1 | 0 | 14 | 73 | 599 | 658 | 8.35e-30 | 128 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa1381170 | 0.803946 | 2.734863e-49 | -8.615850e-47 |
| Msa1381170 | Msa1423350 | 0.806071 | 9.828303e-50 | -8.615850e-47 |
| Msa0828560 | Msa1381170 | 0.807458 | 5.005064e-50 | -8.615850e-47 |
| Msa0300690 | Msa1381170 | 0.800662 | 1.297420e-48 | -8.615850e-47 |
| Msa0339500 | Msa1381170 | 0.806221 | 9.137551e-50 | -8.615850e-47 |
| Msa0569200 | Msa1381170 | 0.806801 | 6.894881e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381170 | MtrunA17_Chr6g0488831 | 98.333 | 60 | 1 | 0 | 14 | 73 | 756 | 815 | 2.63e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCTCGACTTGCGGTTT+TGG | 0.193686 | tig0020422:+131475 | None:intergenic |
| GGTCTTCAGCTTTCCTCTTT+CGG | 0.297223 | tig0020422:+130989 | None:intergenic |
| ATTGAAAGAGCAATGCAATT+TGG | 0.320218 | tig0020422:+133782 | None:intergenic |
| TTTAATAACCCAGGCCTGTT+TGG | 0.327953 | tig0020422:+133942 | None:intergenic |
| CAATAAAATTACATCATATC+TGG | 0.334865 | tig0020422:-133667 | Msa1381170:CDS |
| TGCCATGGATGAACTTAATA+AGG | 0.340936 | tig0020422:-131133 | Msa1381170:CDS |
| CCAGGCCTGTTTGGCTGCAC+TGG | 0.393225 | tig0020422:+133951 | None:intergenic |
| GATGCTTCAATAAAAGATAT+TGG | 0.400569 | tig0020422:-131516 | Msa1381170:CDS |
| CTTAACCAGTGCAGCCAAAC+AGG | 0.415974 | tig0020422:-133956 | Msa1381170:CDS |
| TCATATGAGACTATACTTGC+TGG | 0.436202 | tig0020422:-131332 | Msa1381170:CDS |
| CCAGTGCAGCCAAACAGGCC+TGG | 0.444856 | tig0020422:-133951 | Msa1381170:CDS |
| AGAAAGCTGCAGACCGAAAG+AGG | 0.452039 | tig0020422:-131002 | Msa1381170:CDS |
| CAGTGCAGCCAAACAGGCCT+GGG | 0.462256 | tig0020422:-133950 | Msa1381170:intron |
| CTCCTTATTAAGTTCATCCA+TGG | 0.489328 | tig0020422:+131131 | None:intergenic |
| CGCTAAAGTTCAAAAGCAGT+TGG | 0.502870 | tig0020422:-130893 | Msa1381170:CDS |
| TAAAGTTCAAAAGCAGTTGG+AGG | 0.526913 | tig0020422:-130890 | Msa1381170:CDS |
| TTGTGAGATGTGGAAGATTG+TGG | 0.536227 | tig0020422:+131544 | None:intergenic |
| GAGTGAAGAAAAGAAAAGCA+AGG | 0.548808 | tig0020422:+131956 | None:intergenic |
| TATTGGCCCAAAACTCGACC+TGG | 0.558831 | tig0020422:-131499 | Msa1381170:CDS |
| ACCAGGAGAAGAAAATCCGC+AGG | 0.566934 | tig0020422:-131358 | Msa1381170:intron |
| AGAGGAAAGCTGAAGACCGA+AGG | 0.568425 | tig0020422:-130984 | Msa1381170:CDS |
| GCATCTGCGGTTGTGAGATG+TGG | 0.586657 | tig0020422:+131534 | None:intergenic |
| TTGCTGGAATTCGAAAAGAC+AGG | 0.586755 | tig0020422:-131316 | Msa1381170:CDS |
| AGATTGTGGAGAGATTCAAC+TGG | 0.592091 | tig0020422:+131558 | None:intergenic |
| TGGGCCAAAACCGCAAGTCG+AGG | 0.598924 | tig0020422:-131479 | Msa1381170:CDS |
| AATGCAATTTGGTCCGTGGA+CGG | 0.613979 | tig0020422:+133793 | None:intergenic |
| GTTGAAATGAGCACCGTCCA+CGG | 0.618871 | tig0020422:-133806 | Msa1381170:CDS |
| GAGCAATGCAATTTGGTCCG+TGG | 0.621953 | tig0020422:+133789 | None:intergenic |
| CATGGATGAACTTAATAAGG+AGG | 0.627578 | tig0020422:-131130 | Msa1381170:CDS |
| AGCTCGAAAGCAGAAAGCTG+AGG | 0.629089 | tig0020422:-131097 | Msa1381170:CDS |
| TGAACTTTAGCGGTCCTAGG+TGG | 0.647099 | tig0020422:+130904 | None:intergenic |
| GAAGATAGTGATGCATGCCA+TGG | 0.647386 | tig0020422:-131148 | Msa1381170:CDS |
| CCAGGAGAAGAAAATCCGCA+GGG | 0.657061 | tig0020422:-131357 | Msa1381170:intron |
| ATTGGCCCAAAACTCGACCT+GGG | 0.668400 | tig0020422:-131498 | Msa1381170:CDS |
| AAGTTCGAAAGCAACCACCT+AGG | 0.677703 | tig0020422:-130918 | Msa1381170:CDS |
| TAGTCTCATATGATTCCCTG+CGG | 0.745867 | tig0020422:+131342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTTAAAAATTGATAA+TGG | - | tig0020422:132270-132289 | Msa1381170:intron | 10.0% |
| !! | AGAAAATTAGTTATTTATTT+GGG | + | tig0020422:132795-132814 | None:intergenic | 10.0% |
| !! | AAGAAAATTAGTTATTTATT+TGG | + | tig0020422:132796-132815 | None:intergenic | 10.0% |
| !! | GAAAGTTAATAATGTATTTA+TGG | - | tig0020422:131220-131239 | Msa1381170:intron | 15.0% |
| !! | TATTCTTTAAATAAACAACA+CGG | + | tig0020422:131973-131992 | None:intergenic | 15.0% |
| !!! | TGTTGTTTATTTAAAGAATA+GGG | - | tig0020422:131973-131992 | Msa1381170:CDS | 15.0% |
| !!! | TGATAAAAAATGTTTTCATT+GGG | + | tig0020422:132025-132044 | None:intergenic | 15.0% |
| !!! | ACTTTTTAAATAATCTCTTT+CGG | - | tig0020422:132068-132087 | Msa1381170:intron | 15.0% |
| !!! | ATCAATTTTTAAATCAAACT+GGG | + | tig0020422:132268-132287 | None:intergenic | 15.0% |
| !!! | TATCAATTTTTAAATCAAAC+TGG | + | tig0020422:132269-132288 | None:intergenic | 15.0% |
| !! | TAAAAAATTTCATTTCATGT+TGG | + | tig0020422:132421-132440 | None:intergenic | 15.0% |
| !! | CAATAAAATTACATCATATC+TGG | - | tig0020422:131185-131204 | Msa1381170:intron | 20.0% |
| !! | ATTCTTTAAATAAACAACAC+GGG | + | tig0020422:131972-131991 | None:intergenic | 20.0% |
| !!! | GTGTTGTTTATTTAAAGAAT+AGG | - | tig0020422:131972-131991 | Msa1381170:CDS | 20.0% |
| !!! | GATAAAAAATGTTTTCATTG+GGG | + | tig0020422:132024-132043 | None:intergenic | 20.0% |
| !!! | GTGATAAAAAATGTTTTCAT+TGG | + | tig0020422:132026-132045 | None:intergenic | 20.0% |
| !!! | TTTTTTATCACTCAAATGTT+AGG | - | tig0020422:132035-132054 | Msa1381170:intron | 20.0% |
| !! | TGGATTCAAAATTTAACATT+TGG | + | tig0020422:132099-132118 | None:intergenic | 20.0% |
| !!! | TACAACATTGTTAAATTTTG+AGG | - | tig0020422:132129-132148 | Msa1381170:intron | 20.0% |
| !!! | ACAACATTGTTAAATTTTGA+GGG | - | tig0020422:132130-132149 | Msa1381170:intron | 20.0% |
| !!! | TTAAAAATTGATAATGGTAG+TGG | - | tig0020422:132276-132295 | Msa1381170:intron | 20.0% |
| !!! | AGATGTTATTTAAGATCAAT+GGG | + | tig0020422:132446-132465 | None:intergenic | 20.0% |
| !! | AAATTAGTTATTTATTTGGG+CGG | + | tig0020422:132792-132811 | None:intergenic | 20.0% |
| !! | ATTAATAATAACACACAGTT+TGG | + | tig0020422:133229-133248 | None:intergenic | 20.0% |
| ! | GTTAAACAATTTAATAACCC+AGG | + | tig0020422:130922-130941 | None:intergenic | 25.0% |
| !!! | ATCATTGATAATGCAAATGT+AGG | - | tig0020422:130943-130962 | Msa1381170:CDS | 25.0% |
| !!! | ATGTTAGTCTTTCTTGTTTT+AGG | - | tig0020422:131021-131040 | Msa1381170:CDS | 25.0% |
| ! | ACAAAATACATAGAACAAAC+TGG | + | tig0020422:131315-131334 | None:intergenic | 25.0% |
| !!! | TGTTTGGTGAATTTTTTTTG+AGG | - | tig0020422:131351-131370 | Msa1381170:CDS | 25.0% |
| !!! | GTTTGGTGAATTTTTTTTGA+GGG | - | tig0020422:131352-131371 | Msa1381170:CDS | 25.0% |
| !!! | GAGTATTGACATTAAAATCA+GGG | + | tig0020422:131561-131580 | None:intergenic | 25.0% |
| ! | CTCTACAATTAAATGTGTTT+GGG | + | tig0020422:131937-131956 | None:intergenic | 25.0% |
| ! | ACTCTACAATTAAATGTGTT+TGG | + | tig0020422:131938-131957 | None:intergenic | 25.0% |
| ! | TGAGATATGATTACAATGAA+TGG | + | tig0020422:132168-132187 | None:intergenic | 25.0% |
| ! | TTCTTCGATCAAGTATTATA+AGG | + | tig0020422:132230-132249 | None:intergenic | 25.0% |
| !! | CAGATGTTATTTAAGATCAA+TGG | + | tig0020422:132447-132466 | None:intergenic | 25.0% |
| ! | TTTAAACTACTATCACTCTT+GGG | + | tig0020422:132565-132584 | None:intergenic | 25.0% |
| ! | ATTTAAACTACTATCACTCT+TGG | + | tig0020422:132566-132585 | None:intergenic | 25.0% |
| ! | ATATACATACTTATCTCTCT+AGG | - | tig0020422:132843-132862 | Msa1381170:intron | 25.0% |
| ! | TATACATACTTATCTCTCTA+GGG | - | tig0020422:132844-132863 | Msa1381170:intron | 25.0% |
| ! | AAATAGTGAATTGAAAAGGT+GGG | + | tig0020422:133094-133113 | None:intergenic | 25.0% |
| ! | AAAATAGTGAATTGAAAAGG+TGG | + | tig0020422:133095-133114 | None:intergenic | 25.0% |
| ! | CAGAAAATAGTGAATTGAAA+AGG | + | tig0020422:133098-133117 | None:intergenic | 25.0% |
| ! | GATGCTTCAATAAAAGATAT+TGG | - | tig0020422:133336-133355 | Msa1381170:intron | 25.0% |
| ! | TTAATGTTAATCTCTAAACC+AGG | - | tig0020422:133477-133496 | Msa1381170:intron | 25.0% |
| !! | TTTTAAATCAAAGTCAGACT+TGG | + | tig0020422:133569-133588 | None:intergenic | 25.0% |
| AAATAACTGATATACTTCCC+AGG | + | tig0020422:131001-131020 | None:intergenic | 30.0% | |
| ATTGAAAGAGCAATGCAATT+TGG | + | tig0020422:131073-131092 | None:intergenic | 30.0% | |
| ! | GCTTTTATATGCAATTCAAG+AGG | - | tig0020422:131108-131127 | Msa1381170:CDS | 30.0% |
| !! | TGTATCTAAGACATTTTCTG+TGG | - | tig0020422:131254-131273 | Msa1381170:intron | 30.0% |
| !! | GTATCTAAGACATTTTCTGT+GGG | - | tig0020422:131255-131274 | Msa1381170:intron | 30.0% |
| !! | TATCTAAGACATTTTCTGTG+GGG | - | tig0020422:131256-131275 | Msa1381170:intron | 30.0% |
| TAATTGCTAGCAAACTCATT+AGG | - | tig0020422:131384-131403 | Msa1381170:intron | 30.0% | |
| AGTATCTCTAATTGAAGCTA+CGG | - | tig0020422:131495-131514 | Msa1381170:CDS | 30.0% | |
| !! | GGAGTATTGACATTAAAATC+AGG | + | tig0020422:131562-131581 | None:intergenic | 30.0% |
| !! | TTTTAAGGGAAAAATCGTGT+TGG | + | tig0020422:131600-131619 | None:intergenic | 30.0% |
| TGTTTGGGAAAAGTAGTATT+AGG | + | tig0020422:131922-131941 | None:intergenic | 30.0% | |
| TCACTCAAATGTTAGGAATT+TGG | - | tig0020422:132042-132061 | Msa1381170:intron | 30.0% | |
| CAATGTTGTATTCACACTAT+TGG | + | tig0020422:132119-132138 | None:intergenic | 30.0% | |
| !!! | ATTGTTTTAATCCAATCCCT+TGG | + | tig0020422:132314-132333 | None:intergenic | 30.0% |
| !!! | GTTGTCTCATGTTTTAGTTA+AGG | + | tig0020422:132346-132365 | None:intergenic | 30.0% |
| ! | TGACTTTTATTAAAGACCAG+AGG | - | tig0020422:132465-132484 | Msa1381170:intron | 30.0% |
| ! | GACTTTTATTAAAGACCAGA+GGG | - | tig0020422:132466-132485 | Msa1381170:intron | 30.0% |
| TTAAACTACTATCACTCTTG+GGG | + | tig0020422:132564-132583 | None:intergenic | 30.0% | |
| ATGATAAGAAGAAGAAAGAG+AGG | - | tig0020422:132650-132669 | Msa1381170:intron | 30.0% | |
| ! | TTTTCTTTTCTTCACTCTCA+AGG | - | tig0020422:132902-132921 | Msa1381170:intron | 30.0% |
| TAATCACAGAAGAGATTGAA+AGG | + | tig0020422:133018-133037 | None:intergenic | 30.0% | |
| ! | TTTTCTGTTCTTCTCTCATA+TGG | - | tig0020422:133111-133130 | Msa1381170:intron | 30.0% |
| !! | ATCTTTTATTGAAGCATCTG+CGG | + | tig0020422:133334-133353 | None:intergenic | 30.0% |
| !! | AAAGCATTGTTAACATTTGC+AGG | + | tig0020422:133412-133431 | None:intergenic | 30.0% |
| GATATACTTCCCAGGTTATT+CGG | + | tig0020422:130993-131012 | None:intergenic | 35.0% | |
| !! | ATCTAAGACATTTTCTGTGG+GGG | - | tig0020422:131257-131276 | Msa1381170:intron | 35.0% |
| !!! | ACATAGAACAAACTGGCTTT+TGG | + | tig0020422:131308-131327 | None:intergenic | 35.0% |
| GAGTAACTGAACATCATGTT+TGG | - | tig0020422:131335-131354 | Msa1381170:CDS | 35.0% | |
| !! | GCATCAAAAAGTCTTTTTCG+TGG | + | tig0020422:131461-131480 | None:intergenic | 35.0% |
| AGCTCACTTGATTGAACTAA+AGG | + | tig0020422:131750-131769 | None:intergenic | 35.0% | |
| TGGGAAAAGTAGTATTAGGA+TGG | + | tig0020422:131918-131937 | None:intergenic | 35.0% | |
| GAGTGAAGAAAAGAAAAGCA+AGG | + | tig0020422:132899-132918 | None:intergenic | 35.0% | |
| !! | ATCATGCCACTTTCTTTCTT+TGG | - | tig0020422:133037-133056 | Msa1381170:intron | 35.0% |
| !! | TCATGCCACTTTCTTTCTTT+GGG | - | tig0020422:133038-133057 | Msa1381170:intron | 35.0% |
| TCATATGAGACTATACTTGC+TGG | - | tig0020422:133520-133539 | Msa1381170:intron | 35.0% | |
| TTAATCTCTAATCCAAGCAG+AGG | - | tig0020422:133673-133692 | Msa1381170:CDS | 35.0% | |
| TAATCTCTAATCCAAGCAGA+GGG | - | tig0020422:133674-133693 | Msa1381170:CDS | 35.0% | |
| TGCCATGGATGAACTTAATA+AGG | - | tig0020422:133719-133738 | Msa1381170:CDS | 35.0% | |
| CTCCTTATTAAGTTCATCCA+TGG | + | tig0020422:133724-133743 | None:intergenic | 35.0% | |
| CATGGATGAACTTAATAAGG+AGG | - | tig0020422:133722-133741 | Msa1381170:CDS | 35.0% | |
| !! | CAACTGCTTTTGAACTTTAG+CGG | + | tig0020422:133961-133980 | None:intergenic | 35.0% |
| TAAAGTTCAAAAGCAGTTGG+AGG | - | tig0020422:133962-133981 | Msa1381170:CDS | 35.0% | |
| TTTAATAACCCAGGCCTGTT+TGG | + | tig0020422:130913-130932 | None:intergenic | 40.0% | |
| !! | ATCGCTTTTACCGAATAACC+TGG | - | tig0020422:130980-130999 | Msa1381170:CDS | 40.0% |
| !! | TCGCTTTTACCGAATAACCT+GGG | - | tig0020422:130981-131000 | Msa1381170:CDS | 40.0% |
| ! | TTTTCAGCCATGCAGAAAAG+AGG | - | tig0020422:131146-131165 | Msa1381170:CDS | 40.0% |
| ! | AAAGACTTTTTGATGCCCTG+AGG | - | tig0020422:131465-131484 | Msa1381170:intron | 40.0% |
| ! | AATTGAAGCTACGGTGCTAA+AGG | - | tig0020422:131504-131523 | Msa1381170:CDS | 40.0% |
| ! | ATTGAAGCTACGGTGCTAAA+GGG | - | tig0020422:131505-131524 | Msa1381170:CDS | 40.0% |
| CTTAAGCTAACACACGTGAA+TGG | + | tig0020422:131538-131557 | None:intergenic | 40.0% | |
| TGTTGGCACAAACTTAAGGT+CGG | + | tig0020422:131583-131602 | None:intergenic | 40.0% | |
| ! | ATCGTGTTGGCACAAACTTA+AGG | + | tig0020422:131587-131606 | None:intergenic | 40.0% |
| ! | TGCTGTCAGGCATCTTTTAA+GGG | + | tig0020422:131614-131633 | None:intergenic | 40.0% |
| AGTGGACAAAACATGTTCCA+AGG | - | tig0020422:132294-132313 | Msa1381170:intron | 40.0% | |
| GTGGACAAAACATGTTCCAA+GGG | - | tig0020422:132295-132314 | Msa1381170:intron | 40.0% | |
| CAAAACATGTTCCAAGGGAT+TGG | - | tig0020422:132300-132319 | Msa1381170:intron | 40.0% | |
| GGGGTAGTTCACAAAACAAT+AGG | + | tig0020422:132545-132564 | None:intergenic | 40.0% | |
| ! | AGCGATCCGAATTTTACCAT+GGG | - | tig0020422:132736-132755 | Msa1381170:intron | 40.0% |
| !! | CATGCCACTTTCTTTCTTTG+GGG | - | tig0020422:133039-133058 | Msa1381170:intron | 40.0% |
| !! | ATGCCACTTTCTTTCTTTGG+GGG | - | tig0020422:133040-133059 | Msa1381170:intron | 40.0% |
| ! | TTCTTTCTTTGGGGGTAGTT+AGG | - | tig0020422:133048-133067 | Msa1381170:intron | 40.0% |
| ! | TCTTTCTTTGGGGGTAGTTA+GGG | - | tig0020422:133049-133068 | Msa1381170:intron | 40.0% |
| TCTGTTCTTCTCTCATATGG+AGG | - | tig0020422:133114-133133 | Msa1381170:intron | 40.0% | |
| AGATTGTGGAGAGATTCAAC+TGG | + | tig0020422:133297-133316 | None:intergenic | 40.0% | |
| TTGTGAGATGTGGAAGATTG+TGG | + | tig0020422:133311-133330 | None:intergenic | 40.0% | |
| ! | AAAAAACTTGCCTCGACTTG+CGG | + | tig0020422:133386-133405 | None:intergenic | 40.0% |
| TAGTCTCATATGATTCCCTG+CGG | + | tig0020422:133513-133532 | None:intergenic | 40.0% | |
| TTGCTGGAATTCGAAAAGAC+AGG | - | tig0020422:133536-133555 | Msa1381170:intron | 40.0% | |
| ! | TTTTGAACTTTAGCGGTCCT+AGG | + | tig0020422:133954-133973 | None:intergenic | 40.0% |
| CGCTAAAGTTCAAAAGCAGT+TGG | - | tig0020422:133959-133978 | Msa1381170:CDS | 40.0% | |
| AATGCAATTTGGTCCGTGGA+CGG | + | tig0020422:131062-131081 | None:intergenic | 45.0% | |
| GAGATACTACTTCAGCCTCA+GGG | + | tig0020422:131483-131502 | None:intergenic | 45.0% | |
| AGAGATACTACTTCAGCCTC+AGG | + | tig0020422:131484-131503 | None:intergenic | 45.0% | |
| ! | GTGCTGTCAGGCATCTTTTA+AGG | + | tig0020422:131615-131634 | None:intergenic | 45.0% |
| ATTTGTGCACATGTGCTGTC+AGG | + | tig0020422:131627-131646 | None:intergenic | 45.0% | |
| GTGCAGCACAAAGATTTCTC+AGG | - | tig0020422:131787-131806 | Msa1381170:intron | 45.0% | |
| CAGCACAAAGATTTCTCAGG+AGG | - | tig0020422:131889-131908 | Msa1381170:intron | 45.0% | |
| ! | CAGCGATCCGAATTTTACCA+TGG | - | tig0020422:132735-132754 | Msa1381170:intron | 45.0% |
| ! | TCCGAATTTTACCATGGGCT+CGG | - | tig0020422:132741-132760 | Msa1381170:intron | 45.0% |
| !! | CATACTTATCTCTCTAGGGC+TGG | - | tig0020422:132848-132867 | Msa1381170:intron | 45.0% |
| CTACCCCCAAAGAAAGAAAG+TGG | + | tig0020422:133046-133065 | None:intergenic | 45.0% | |
| GAAGATAGTGATGCATGCCA+TGG | - | tig0020422:133704-133723 | Msa1381170:CDS | 45.0% | |
| GGTCTTCAGCTTTCCTCTTT+CGG | + | tig0020422:133866-133885 | None:intergenic | 45.0% | |
| ! | CATCAGCAGCTTTTTGCCTT+CGG | + | tig0020422:133887-133906 | None:intergenic | 45.0% |
| AAGTTCGAAAGCAACCACCT+AGG | - | tig0020422:133934-133953 | Msa1381170:intron | 45.0% | |
| !! | AAATTAAATTAATATGAAAT+TGG | + | tig0020422:131704-131723 | None:intergenic | 5.0% |
| !!! | GTTTTTTTAAATATATTTTT+GGG | + | tig0020422:132610-132629 | None:intergenic | 5.0% |
| !!! | AGTTTTTTTAAATATATTTT+TGG | + | tig0020422:132611-132630 | None:intergenic | 5.0% |
| CTTAACCAGTGCAGCCAAAC+AGG | - | tig0020422:130896-130915 | Msa1381170:CDS | 50.0% | |
| ! | GTTGAAATGAGCACCGTCCA+CGG | - | tig0020422:131046-131065 | Msa1381170:CDS | 50.0% |
| GAGCAATGCAATTTGGTCCG+TGG | + | tig0020422:131066-131085 | None:intergenic | 50.0% | |
| !!! | CTGGCTTTTGGAGTTCAACC+AGG | + | tig0020422:131296-131315 | None:intergenic | 50.0% |
| TCAAGTGAGCTACCTATCCC+AGG | - | tig0020422:131759-131778 | Msa1381170:intron | 50.0% | |
| CAAGTGAGCTACCTATCCCA+GGG | - | tig0020422:131760-131779 | Msa1381170:intron | 50.0% | |
| TCAAGTGAGCTACCTATCCC+AGG | - | tig0020422:131759-131778 | Msa1381170:intron | 50.0% | |
| CAAGTGAGCTACCTATCCCA+GGG | - | tig0020422:131760-131779 | Msa1381170:intron | 50.0% | |
| AGATAGAGAGCTACTCCCTC+TGG | + | tig0020422:132484-132503 | None:intergenic | 50.0% | |
| CCCGAGCCCATGGTAAAATT+CGG | + | tig0020422:132745-132764 | None:intergenic | 50.0% | |
| ! | CCGAATTTTACCATGGGCTC+GGG | - | tig0020422:132742-132761 | Msa1381170:intron | 50.0% |
| AATTTGAAAGCCCGAGCCCA+TGG | + | tig0020422:132755-132774 | None:intergenic | 50.0% | |
| TATTGGCCCAAAACTCGACC+TGG | - | tig0020422:133353-133372 | Msa1381170:intron | 50.0% | |
| ATTGGCCCAAAACTCGACCT+GGG | - | tig0020422:133354-133373 | Msa1381170:intron | 50.0% | |
| ! | TTTGGCCCAGGTCGAGTTTT+GGG | + | tig0020422:133362-133381 | None:intergenic | 50.0% |
| ! | TTTTGGCCCAGGTCGAGTTT+TGG | + | tig0020422:133363-133382 | None:intergenic | 50.0% |
| ACCAGGAGAAGAAAATCCGC+AGG | - | tig0020422:133494-133513 | Msa1381170:intron | 50.0% | |
| CCAGGAGAAGAAAATCCGCA+GGG | - | tig0020422:133495-133514 | Msa1381170:intron | 50.0% | |
| AGCTCGAAAGCAGAAAGCTG+AGG | - | tig0020422:133755-133774 | Msa1381170:CDS | 50.0% | |
| AGAAAGCTGCAGACCGAAAG+AGG | - | tig0020422:133850-133869 | Msa1381170:intron | 50.0% | |
| AGAGGAAAGCTGAAGACCGA+AGG | - | tig0020422:133868-133887 | Msa1381170:intron | 50.0% | |
| TGAACTTTAGCGGTCCTAGG+TGG | + | tig0020422:133951-133970 | None:intergenic | 50.0% | |
| ! | CTGCACGCCTCTTTTCTGCA+TGG | + | tig0020422:131156-131175 | None:intergenic | 55.0% |
| GGGGGAACAGATCTTGTTCC+TGG | - | tig0020422:131275-131294 | Msa1381170:intron | 55.0% | |
| TTTGTGCTGCACCTCACCCT+GGG | + | tig0020422:131779-131798 | None:intergenic | 55.0% | |
| TTTGTGCTGCACCTCACCCT+GGG | + | tig0020422:131779-131798 | None:intergenic | 55.0% | |
| GCATCTGCGGTTGTGAGATG+TGG | + | tig0020422:133321-133340 | None:intergenic | 55.0% | |
| !! | CTTGCCTCGACTTGCGGTTT+TGG | + | tig0020422:133380-133399 | None:intergenic | 55.0% |
| ! | CCCTGCGGATTTTCTTCTCC+TGG | + | tig0020422:133498-133517 | None:intergenic | 55.0% |
| CTTCAGCAATGCCCTCTGCT+TGG | + | tig0020422:133688-133707 | None:intergenic | 55.0% | |
| CAGTGCAGCCAAACAGGCCT+GGG | - | tig0020422:130902-130921 | Msa1381170:CDS | 60.0% | |
| GAGCTACCTATCCCAGGGTG+AGG | - | tig0020422:131765-131784 | Msa1381170:intron | 60.0% | |
| CTTTGTGCTGCACCTCACCC+TGG | + | tig0020422:131780-131799 | None:intergenic | 60.0% | |
| GAGCTACCTATCCCAGGGTG+AGG | - | tig0020422:131765-131784 | Msa1381170:intron | 60.0% | |
| CTTTGTGCTGCACCTCACCC+TGG | + | tig0020422:131780-131799 | None:intergenic | 60.0% | |
| !! | TCGACTTGCGGTTTTGGCCC+AGG | + | tig0020422:133374-133393 | None:intergenic | 60.0% |
| TGGGCCAAAACCGCAAGTCG+AGG | - | tig0020422:133373-133392 | Msa1381170:intron | 60.0% | |
| CCAGGCCTGTTTGGCTGCAC+TGG | + | tig0020422:130904-130923 | None:intergenic | 65.0% | |
| CCAGTGCAGCCAAACAGGCC+TGG | - | tig0020422:130901-130920 | Msa1381170:CDS | 65.0% | |
| GCTGCACCTCACCCTGGGAT+AGG | + | tig0020422:131774-131793 | None:intergenic | 65.0% | |
| GCTGCACCTCACCCTGGGAT+AGG | + | tig0020422:131774-131793 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020422 | gene | 130885 | 133989 | 130885 | ID=Msa1381170;Name=Msa1381170 |
| tig0020422 | mRNA | 130885 | 133989 | 130885 | ID=Msa1381170-mRNA-1;Parent=Msa1381170;Name=Msa1381170-mRNA-1;_AED=0.87;_eAED=0.87;_QI=0|0|0|0.16|1|1|6|0|268 |
| tig0020422 | exon | 133951 | 133989 | 133951 | ID=Msa1381170-mRNA-1:exon:7435;Parent=Msa1381170-mRNA-1 |
| tig0020422 | exon | 133651 | 133831 | 133651 | ID=Msa1381170-mRNA-1:exon:7434;Parent=Msa1381170-mRNA-1 |
| tig0020422 | exon | 131951 | 132009 | 131951 | ID=Msa1381170-mRNA-1:exon:7433;Parent=Msa1381170-mRNA-1 |
| tig0020422 | exon | 131476 | 131610 | 131476 | ID=Msa1381170-mRNA-1:exon:7432;Parent=Msa1381170-mRNA-1 |
| tig0020422 | exon | 131280 | 131375 | 131280 | ID=Msa1381170-mRNA-1:exon:7431;Parent=Msa1381170-mRNA-1 |
| tig0020422 | exon | 130885 | 131181 | 130885 | ID=Msa1381170-mRNA-1:exon:7430;Parent=Msa1381170-mRNA-1 |
| tig0020422 | CDS | 133951 | 133989 | 133951 | ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1 |
| tig0020422 | CDS | 133651 | 133831 | 133651 | ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1 |
| tig0020422 | CDS | 131951 | 132009 | 131951 | ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1 |
| tig0020422 | CDS | 131476 | 131610 | 131476 | ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1 |
| tig0020422 | CDS | 131280 | 131375 | 131280 | ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1 |
| tig0020422 | CDS | 130885 | 131181 | 130885 | ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
