AlfalfaGEDB | Msa1381170

M. sativa cultivar zhongmu-4 / Msa1381170

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1381170	KEH27287.1	98.333	60	1	0	14	73	599	658	1.75e-29	128

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1381170	A0A072UCF1	98.333	60	1	0	14	73	599	658	8.35e-30	128

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016670	Msa1381170	0.803946	2.734863e-49	-8.615850e-47
Msa0300690	Msa1381170	0.800662	1.297420e-48	-8.615850e-47
Msa0339500	Msa1381170	0.806221	9.137551e-50	-8.615850e-47
Msa0569200	Msa1381170	0.806801	6.894881e-50	-8.615850e-47
Msa0828560	Msa1381170	0.807458	5.005064e-50	-8.615850e-47
Msa1381170	Msa1423350	0.806071	9.828303e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1381170	MtrunA17_Chr6g0488831	98.333	60	1	0	14	73	756	815	2.63e-33	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 36 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTCGAAAGCAACCACCT+AGG	0.677703	tig0020422:-130918	Msa1381170:CDS
AATGCAATTTGGTCCGTGGA+CGG	0.613979	tig0020422:+133793	None:intergenic
ACCAGGAGAAGAAAATCCGC+AGG	0.566934	tig0020422:-131358	Msa1381170:intron
AGAAAGCTGCAGACCGAAAG+AGG	0.452039	tig0020422:-131002	Msa1381170:CDS
AGAGGAAAGCTGAAGACCGA+AGG	0.568425	tig0020422:-130984	Msa1381170:CDS
AGATTGTGGAGAGATTCAAC+TGG	0.592091	tig0020422:+131558	None:intergenic
AGCTCGAAAGCAGAAAGCTG+AGG	0.629089	tig0020422:-131097	Msa1381170:CDS
ATTGAAAGAGCAATGCAATT+TGG	0.320218	tig0020422:+133782	None:intergenic
ATTGGCCCAAAACTCGACCT+GGG	0.668400	tig0020422:-131498	Msa1381170:CDS
CAATAAAATTACATCATATC+TGG	0.334865	tig0020422:-133667	Msa1381170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAACTGATATACTTCCC+AGG	+	tig0020422:131001-131020	None:intergenic	30.0%
ATTGAAAGAGCAATGCAATT+TGG	+	tig0020422:131073-131092	None:intergenic	30.0%
TAATTGCTAGCAAACTCATT+AGG	-	tig0020422:131384-131403	Msa1381170:intron	30.0%
AGTATCTCTAATTGAAGCTA+CGG	-	tig0020422:131495-131514	Msa1381170:CDS	30.0%
TGTTTGGGAAAAGTAGTATT+AGG	+	tig0020422:131922-131941	None:intergenic	30.0%
TCACTCAAATGTTAGGAATT+TGG	-	tig0020422:132042-132061	Msa1381170:intron	30.0%
CAATGTTGTATTCACACTAT+TGG	+	tig0020422:132119-132138	None:intergenic	30.0%
TTAAACTACTATCACTCTTG+GGG	+	tig0020422:132564-132583	None:intergenic	30.0%
ATGATAAGAAGAAGAAAGAG+AGG	-	tig0020422:132650-132669	Msa1381170:intron	30.0%
TAATCACAGAAGAGATTGAA+AGG	+	tig0020422:133018-133037	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020422	gene	130885	133989	130885	ID=Msa1381170;Name=Msa1381170
tig0020422	mRNA	130885	133989	130885	ID=Msa1381170-mRNA-1;Parent=Msa1381170;Name=Msa1381170-mRNA-1;_AED=0.87;_eAED=0.87;_QI=0\|0\|0\|0.16\|1\|1\|6\|0\|268
tig0020422	exon	133951	133989	133951	ID=Msa1381170-mRNA-1:exon:7435;Parent=Msa1381170-mRNA-1
tig0020422	exon	133651	133831	133651	ID=Msa1381170-mRNA-1:exon:7434;Parent=Msa1381170-mRNA-1
tig0020422	exon	131951	132009	131951	ID=Msa1381170-mRNA-1:exon:7433;Parent=Msa1381170-mRNA-1
tig0020422	exon	131476	131610	131476	ID=Msa1381170-mRNA-1:exon:7432;Parent=Msa1381170-mRNA-1
tig0020422	exon	131280	131375	131280	ID=Msa1381170-mRNA-1:exon:7431;Parent=Msa1381170-mRNA-1
tig0020422	exon	130885	131181	130885	ID=Msa1381170-mRNA-1:exon:7430;Parent=Msa1381170-mRNA-1
tig0020422	CDS	133951	133989	133951	ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1
tig0020422	CDS	133651	133831	133651	ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1
tig0020422	CDS	131951	132009	131951	ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1
tig0020422	CDS	131476	131610	131476	ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1
tig0020422	CDS	131280	131375	131280	ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1
tig0020422	CDS	130885	131181	130885	ID=Msa1381170-mRNA-1:cds;Parent=Msa1381170-mRNA-1

Gene Sequence

>Msa1381170

ATGTGCAGAAACTTAACCAGTGCAGCCAAACAGGCCTGGGTTGTTGAAATGAGCACCGTCCACGGACCAAATTGCATTGCTCTTTCAATTGAAGTCGAAGAGCAGCTTTTATATGCAATTCAAGAGGTTGTGAACTTGAATATTTTCAGCCATGCAGAAAAGAGGCGTGCAGCTGAATTAGCAATAAAATTACATCATATCTGGAGTAAGATTAGTGAAAGGCTGGTTGCATTACGATTTTCATTCATAATCCTTGCTTTTCTTTTCTTCACTCTCAAGTCAAATTCAATTTCTCTTTCTATTGCTTTGCCAGTTGAATCTCTCCACAATCTTCCACATCTCACAACCGCAGATGCTTCAATAAAAGATATTGGCCCAAAACTCGACCTGGGCCAAAACCGCAAGTCGAGGCAAGAGAAGAAAATCCGCAGGGAATCATATGAGACTATACTTGCTGGAATTCGAAAAGACAGGAATAAAGCCAAGTCTGACTTTGATTTAAAAGTCGATAGGGCATTGCTGAAGATAGTGATGCATGCCATGGATGAACTTAATAAGGAGGAAGCTGCTGAAGCTCGAAAGCAGAAAGCTGAGGACAAAAAGAAGAGAGCTGAAGACAGAAAGCAGAAAGCTGAAGAAAGAAAGAAGAAAGATGAAGATCGAAAGCAGAAAGCTGCAGACCGAAAGAGGAAAGCTGAAGACCGAAGGCAAAAAGCTGCTGATGAGAGAAAGAAGAAAGCAAAGATAACTGAAGTTCGAAAGCAACCACCTAGGACCGCTAAAGTTCAAAAGCAGTTGGAGGCTTAA

Protein sequence

>Msa1381170

MCRNLTSAAKQAWVVEMSTVHGPNCIALSIEVEEQLLYAIQEVVNLNIFSHAEKRRAAELAIKLHHIWSKISERLVALRFSFIILAFLFFTLKSNSISLSIALPVESLHNLPHLTTADASIKDIGPKLDLGQNRKSRQEKKIRRESYETILAGIRKDRNKAKSDFDLKVDRALLKIVMHAMDELNKEEAAEARKQKAEDKKKRAEDRKQKAEERKKKDEDRKQKAADRKRKAEDRRQKAADERKKKAKITEVRKQPPRTAKVQKQLEA*