Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381320 | PNY09408.1 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381320 | sp|Q197W8|TANA_ARATH | 43.011 | 465 | 219 | 20 | 1 | 435 | 1 | 449 | 2.63e-92 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381320 | A0A2K3P284 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381320 | Msa1431530 | 0.861246 | 1.174007e-63 | -8.615850e-47 |
| Msa1083640 | Msa1381320 | 0.873513 | 1.387667e-67 | -8.615850e-47 |
| Msa1164810 | Msa1381320 | 0.872509 | 3.010785e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381320 | MtrunA17_Chr7g0272861 | 71.106 | 443 | 87 | 7 | 1 | 438 | 1 | 407 | 0.0 | 569 |
| Msa1381320 | MtrunA17_Chr7g0272861 | 83.425 | 181 | 29 | 1 | 342 | 521 | 249 | 429 | 4.44e-87 | 275 |
| Msa1381320 | MtrunA17_Chr1g0191861 | 74.603 | 63 | 16 | 0 | 28 | 90 | 9 | 71 | 1.56e-26 | 102 |
| Msa1381320 | MtrunA17_Chr1g0191871 | 68.182 | 66 | 19 | 2 | 102 | 165 | 1 | 66 | 2.11e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381320 | AT3G05330.1 | 42.702 | 459 | 217 | 20 | 1 | 429 | 1 | 443 | 4.96e-91 | 286 |
Find 103 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATATGTTCTTAAATTT+TGG | 0.039887 | tig0020424:-106154 | None:intergenic |
| TTTGACCATATTAATATATT+TGG | 0.147711 | tig0020424:+106291 | Msa1381320:three_prime_UTR |
| TTTCCCAAACCAGTTAATTT+AGG | 0.199173 | tig0020424:+104474 | Msa1381320:CDS |
| AAAACAAGTATTTAGCAAAT+AGG | 0.240085 | tig0020424:+105222 | Msa1381320:CDS |
| TGTGTTGTTGCTACTCTATT+TGG | 0.253333 | tig0020424:-105644 | None:intergenic |
| GGTGGAACAAAGCTGGTTTC+TGG | 0.263887 | tig0020424:+104046 | Msa1381320:CDS |
| GTTGTTGATGTTACTCTATT+TGG | 0.265736 | tig0020424:-105431 | None:intergenic |
| GTTGTTGATGTTACTCTATT+TGG | 0.275395 | tig0020424:-105572 | None:intergenic |
| ACCTCCTAAATTAACTGGTT+TGG | 0.288483 | tig0020424:-104478 | None:intergenic |
| AGAGACCTTGAAGTTGATTC+TGG | 0.292172 | tig0020424:-105159 | None:intergenic |
| CCTCCTAAATTAACTGGTTT+GGG | 0.296949 | tig0020424:-104477 | None:intergenic |
| TGTTACTCTATTTGGTGATT+TGG | 0.305045 | tig0020424:-105564 | None:intergenic |
| TTTGATGCAGCCAATCTCTT+TGG | 0.305480 | tig0020424:-105992 | None:intergenic |
| TGCGTTGTTGCTACTCTATT+TGG | 0.307896 | tig0020424:-105503 | None:intergenic |
| ACCTTTGTCTCCTTCTAGAT+TGG | 0.315687 | tig0020424:+105853 | Msa1381320:CDS |
| CAACAACGCCACACAAGTTT+AGG | 0.321234 | tig0020424:+105375 | Msa1381320:CDS |
| GATGCAAGCAAGAATCTATT+AGG | 0.332220 | tig0020424:+104119 | Msa1381320:CDS |
| TTCATTGTATTTATTTCATA+AGG | 0.339782 | tig0020424:+106189 | Msa1381320:three_prime_UTR |
| AAAACATACTCAGAGCTAAA+AGG | 0.339987 | tig0020424:+105072 | Msa1381320:CDS |
| ACACTTCTCTTGCTCTTTGT+TGG | 0.348806 | tig0020424:-105881 | None:intergenic |
| ACCGTACCTCCTAAATTAAC+TGG | 0.361045 | tig0020424:-104483 | None:intergenic |
| TTTGGAGAGTTCAATCTTGT+AGG | 0.363209 | tig0020424:-105800 | None:intergenic |
| AAACAAGTATTTAGCAAATA+GGG | 0.363248 | tig0020424:+105223 | Msa1381320:CDS |
| GTTCAATCTTGTAGGTCTCT+TGG | 0.368805 | tig0020424:-105792 | None:intergenic |
| ACGTTGTCTAGGTGGGGTTT+TGG | 0.369866 | tig0020424:-103839 | None:intergenic |
| GATGCAGCACGATATCTCTT+TGG | 0.376546 | tig0020424:-105818 | None:intergenic |
| AAAGTTGATGGCTTTGTTAG+TGG | 0.379685 | tig0020424:+106091 | Msa1381320:CDS |
| GAAGAAGTTGAAGAGAATAA+AGG | 0.383707 | tig0020424:-105296 | None:intergenic |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | tig0020424:+105447 | Msa1381320:CDS |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | tig0020424:+105588 | Msa1381320:CDS |
| TTATAAACTTATGCGGTGAT+TGG | 0.387389 | tig0020424:-105541 | None:intergenic |
| GGTGTTGTTGATGTTACTTT+TGG | 0.392704 | tig0020424:-105713 | None:intergenic |
| ACTTGTTCTGAGATAAGTTC+TGG | 0.395882 | tig0020424:-104092 | None:intergenic |
| TCATAAACTTATGCGGTGAT+TGG | 0.398357 | tig0020424:-105682 | None:intergenic |
| ACATATTTCTTGCTCTTCAA+TGG | 0.405712 | tig0020424:-106064 | None:intergenic |
| TTCAATCTTGTAGGTCTCTT+GGG | 0.406930 | tig0020424:-105791 | None:intergenic |
| CGGTGATTGGATCCGAAACT+TGG | 0.411229 | tig0020424:-105669 | None:intergenic |
| AAATTCCAAATATATTAATA+TGG | 0.414532 | tig0020424:-106296 | None:intergenic |
| GTTTCACCTACAAGCATTGC+AGG | 0.415594 | tig0020424:-104924 | None:intergenic |
| GTTGGTGCAGCCAATCTAGA+AGG | 0.417865 | tig0020424:-105863 | None:intergenic |
| AGTGTTTGTCTGATAAGAAC+AGG | 0.423320 | tig0020424:-103883 | None:intergenic |
| AGTTGAAGAGAATAAAGGAT+TGG | 0.426932 | tig0020424:-105291 | None:intergenic |
| TCAGAAACTTATGTGGTGAT+TGG | 0.427597 | tig0020424:-105472 | None:intergenic |
| CAACAACGCAACACAAGTTT+CGG | 0.429480 | tig0020424:+105516 | Msa1381320:CDS |
| ATGGATTAGTGTGTTTGAAT+AGG | 0.436639 | tig0020424:+105915 | Msa1381320:CDS |
| CTAGCCCATGGCCTATTCCT+AGG | 0.437592 | tig0020424:-105251 | None:intergenic |
| ATCTTTCTCTCCTTCGAGAC+TGG | 0.438651 | tig0020424:+106024 | Msa1381320:CDS |
| ATAGGGTATCTCCTAGGAAT+AGG | 0.439133 | tig0020424:+105240 | Msa1381320:CDS |
| CAACAACACAACCCAAGTTT+CGG | 0.439758 | tig0020424:+105657 | Msa1381320:CDS |
| TCATTGCCTGCAATGCTTGT+AGG | 0.449054 | tig0020424:+104918 | Msa1381320:CDS |
| GCGTTCCAGAATCAACTTCA+AGG | 0.450480 | tig0020424:+105154 | Msa1381320:CDS |
| GTTGAAGAGAATAAAGGATT+GGG | 0.461284 | tig0020424:-105290 | None:intergenic |
| AGAGAAATAGTTTCTTCAGT+TGG | 0.467736 | tig0020424:+104981 | Msa1381320:CDS |
| TGCTCTATTTCTTGATATGA+CGG | 0.468194 | tig0020424:-105351 | None:intergenic |
| CAAGAGTTCTCCAAAGAGAT+TGG | 0.474726 | tig0020424:+105982 | Msa1381320:CDS |
| TAAGAAACTTGTGTGGTGAT+TGG | 0.482000 | tig0020424:-105613 | None:intergenic |
| GAGCAAGAAAAGTGATGGAT+TGG | 0.487892 | tig0020424:+105949 | Msa1381320:CDS |
| CCCAAACCAGTTAATTTAGG+AGG | 0.507986 | tig0020424:+104477 | Msa1381320:CDS |
| GAACTACAATTCACTGTGGC+AGG | 0.508994 | tig0020424:+104025 | Msa1381320:CDS |
| GCTCTATTTCTTGATATGAC+GGG | 0.513767 | tig0020424:-105350 | None:intergenic |
| ACATATTACGTTGTCTAGGT+GGG | 0.516327 | tig0020424:-103846 | None:intergenic |
| GGCAATTGTACTGTTGTAGC+TGG | 0.517437 | tig0020424:-106127 | None:intergenic |
| CATATTACGTTGTCTAGGTG+GGG | 0.533124 | tig0020424:-103845 | None:intergenic |
| CTCCTTCGAGACTGGTAACA+AGG | 0.534952 | tig0020424:+106032 | Msa1381320:CDS |
| CTGGAACGCACTTGTTGAGA+TGG | 0.535724 | tig0020424:-105140 | None:intergenic |
| CCAAAGAGCAAGAAAAGTGA+TGG | 0.536346 | tig0020424:+105944 | Msa1381320:CDS |
| GTTTCGATCAGAAACTTATG+AGG | 0.538941 | tig0020424:-105407 | None:intergenic |
| TTTGAAGGTGGATCAGTGCA+TGG | 0.541390 | tig0020424:+103991 | Msa1381320:intron |
| ACTCAGAGCTAAAAGGAGAA+AGG | 0.547146 | tig0020424:+105079 | Msa1381320:CDS |
| TGTGGCAGGTGGAACAAAGC+TGG | 0.548780 | tig0020424:+104039 | Msa1381320:CDS |
| TATCTCCTAGGAATAGGCCA+TGG | 0.549739 | tig0020424:+105246 | Msa1381320:CDS |
| CTTGTAGGTCTCTTGGGTGA+AGG | 0.550040 | tig0020424:-105785 | None:intergenic |
| GCTAACATATTACGTTGTCT+AGG | 0.559526 | tig0020424:-103850 | None:intergenic |
| AGAAGTGTACAGAAAAGTGA+TGG | 0.573647 | tig0020424:+105896 | Msa1381320:CDS |
| AACATATTACGTTGTCTAGG+TGG | 0.573679 | tig0020424:-103847 | None:intergenic |
| TAGCAAATAGGGTATCTCCT+AGG | 0.574329 | tig0020424:+105234 | Msa1381320:CDS |
| GTAGGTCTCTTGGGTGAAGG+TGG | 0.578281 | tig0020424:-105782 | None:intergenic |
| AGTACTGTCTTTCTAGCCCA+TGG | 0.578757 | tig0020424:-105263 | None:intergenic |
| ATCTCCTAGGAATAGGCCAT+GGG | 0.582839 | tig0020424:+105247 | Msa1381320:CDS |
| CAACAACACCACAAAAGTCT+CGG | 0.586382 | tig0020424:+105726 | Msa1381320:CDS |
| AGCCTTGTTACCAGTCTCGA+AGG | 0.600893 | tig0020424:-106034 | None:intergenic |
| CGCACTTGTTGAGATGGTAA+TGG | 0.601173 | tig0020424:-105134 | None:intergenic |
| GATTTGATCAGAAACTTATG+TGG | 0.606522 | tig0020424:-105758 | None:intergenic |
| CTACAATTCACTGTGGCAGG+TGG | 0.624153 | tig0020424:+104028 | Msa1381320:CDS |
| AGGTGGATCAGTGCATGGAT+CGG | 0.626730 | tig0020424:+103996 | Msa1381320:intron |
| GGTGATTGGATCCGAAACTT+GGG | 0.626899 | tig0020424:-105668 | None:intergenic |
| GATTCAATCAGAAACTTATG+TGG | 0.637657 | tig0020424:-105479 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | tig0020424:-105455 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | tig0020424:-105596 | None:intergenic |
| GATTTGGTTATAAACTTATG+CGG | 0.647613 | tig0020424:-105548 | None:intergenic |
| GATTTGATCCTAAACTTGTG+TGG | 0.652691 | tig0020424:-105383 | None:intergenic |
| GCCAATCTAGAAGGAGACAA+AGG | 0.660648 | tig0020424:-105854 | None:intergenic |
| CACATAGTAAGTAGTAACCA+TGG | 0.662199 | tig0020424:+103813 | Msa1381320:exon |
| TATCAGACAAACACTCAACA+AGG | 0.669769 | tig0020424:+103891 | Msa1381320:CDS |
| GTAACTTTGATGCAGCTGAG+TGG | 0.671723 | tig0020424:+104886 | Msa1381320:intron |
| GATTTGGTCATAAACTTATG+CGG | 0.690111 | tig0020424:-105689 | None:intergenic |
| AGATAAGTTCTGGTGCTACG+AGG | 0.714981 | tig0020424:-104082 | None:intergenic |
| ACTTGTTGAGATGGTAATGG+TGG | 0.716854 | tig0020424:-105131 | None:intergenic |
| GATTCAATAAGAAACTTGTG+TGG | 0.717680 | tig0020424:-105620 | None:intergenic |
| TGGTACAAAATTTGCCACCG+AGG | 0.726257 | tig0020424:+105001 | Msa1381320:CDS |
| GGTTTGGGAAACTTCCCCAG+CGG | 0.746127 | tig0020424:-104462 | None:intergenic |
| CTTACTATGTGTGATCCACG+CGG | 0.776784 | tig0020424:-103801 | None:intergenic |
| ACAAGAACTACAATTCACTG+TGG | 0.807781 | tig0020424:+104021 | Msa1381320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAAAATGGATTAA+GGG | - | tig0020424:103940-103959 | None:intergenic | 10.0% |
| !!! | AATTAAAATAAAATGGATTA+AGG | - | tig0020424:103941-103960 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTTTGAAAACT+CGG | - | tig0020424:104356-104375 | None:intergenic | 10.0% |
| !! | AAATTCCAAATATATTAATA+TGG | - | tig0020424:106299-106318 | None:intergenic | 10.0% |
| !! | TTCAGGTAATTAAAATAAAA+TGG | - | tig0020424:103948-103967 | None:intergenic | 15.0% |
| !! | ATAACAATTACATATAATTC+AGG | - | tig0020424:103965-103984 | None:intergenic | 15.0% |
| !! | TTCATTGTATTTATTTCATA+AGG | + | tig0020424:106189-106208 | Msa1381320:three_prime_UTR | 15.0% |
| !! | TTTGACCATATTAATATATT+TGG | + | tig0020424:106291-106310 | Msa1381320:three_prime_UTR | 15.0% |
| !!! | AATTGTTATGATTCTTTTGA+AGG | + | tig0020424:103976-103995 | Msa1381320:intron | 20.0% |
| !! | AAAACAAGTATTTAGCAAAT+AGG | + | tig0020424:105222-105241 | Msa1381320:CDS | 20.0% |
| !! | AAACAAGTATTTAGCAAATA+GGG | + | tig0020424:105223-105242 | Msa1381320:CDS | 20.0% |
| !! | AAATATGTACAAAAAGTTGA+TGG | + | tig0020424:106079-106098 | Msa1381320:CDS | 20.0% |
| !!! | ATATGTTCTTAAATTTTGGA+CGG | - | tig0020424:106153-106172 | None:intergenic | 20.0% |
| !!! | CACAATATGTTCTTAAATTT+TGG | - | tig0020424:106157-106176 | None:intergenic | 20.0% |
| ! | ATGTTATGTTGCTAATTTGA+AGG | + | tig0020424:104412-104431 | Msa1381320:intron | 25.0% |
| ! | GAATTGAGAATAAAGAATTG+AGG | - | tig0020424:104843-104862 | None:intergenic | 25.0% |
| !! | AACTGTTGTAGAAATTTTAC+AGG | + | tig0020424:104944-104963 | Msa1381320:CDS | 25.0% |
| !!! | TCAAAGTCTCTTACTTTTTT+TGG | - | tig0020424:105188-105207 | None:intergenic | 25.0% |
| !! | GATTTGGTTATAAACTTATG+CGG | - | tig0020424:105551-105570 | None:intergenic | 25.0% |
| !! | TATGTTCTTAAATTTTGGAC+GGG | - | tig0020424:106152-106171 | None:intergenic | 25.0% |
| !! | TGTTATGATTCTTTTGAAGG+TGG | + | tig0020424:103979-103998 | Msa1381320:intron | 30.0% |
| TTTCCCAAACCAGTTAATTT+AGG | + | tig0020424:104474-104493 | Msa1381320:CDS | 30.0% | |
| ACTAAGCTATTATTCACGAT+TGG | + | tig0020424:104727-104746 | Msa1381320:intron | 30.0% | |
| ACCAATTACATTGAAACGAT+TGG | + | tig0020424:104751-104770 | Msa1381320:intron | 30.0% | |
| TGAGAATAAAGAATTGAGGA+GGG | - | tig0020424:104839-104858 | None:intergenic | 30.0% | |
| TTGAGAATAAAGAATTGAGG+AGG | - | tig0020424:104840-104859 | None:intergenic | 30.0% | |
| AGAGAAATAGTTTCTTCAGT+TGG | + | tig0020424:104981-105000 | Msa1381320:CDS | 30.0% | |
| !!! | TTGTTTGAGTTTTGAGATAG+CGG | - | tig0020424:105038-105057 | None:intergenic | 30.0% |
| AAAACATACTCAGAGCTAAA+AGG | + | tig0020424:105072-105091 | Msa1381320:CDS | 30.0% | |
| !!! | AAGTCTCTTACTTTTTTTGG+AGG | - | tig0020424:105185-105204 | None:intergenic | 30.0% |
| GTTGAAGAGAATAAAGGATT+GGG | - | tig0020424:105293-105312 | None:intergenic | 30.0% | |
| AGTTGAAGAGAATAAAGGAT+TGG | - | tig0020424:105294-105313 | None:intergenic | 30.0% | |
| GAAGAAGTTGAAGAGAATAA+AGG | - | tig0020424:105299-105318 | None:intergenic | 30.0% | |
| ! | TGCTCTATTTCTTGATATGA+CGG | - | tig0020424:105354-105373 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | - | tig0020424:105434-105453 | None:intergenic | 30.0% | |
| GATTCAATCAGAAACTTATG+TGG | - | tig0020424:105482-105501 | None:intergenic | 30.0% | |
| TTATAAACTTATGCGGTGAT+TGG | - | tig0020424:105544-105563 | None:intergenic | 30.0% | |
| ! | TGTTACTCTATTTGGTGATT+TGG | - | tig0020424:105567-105586 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | - | tig0020424:105434-105453 | None:intergenic | 30.0% | |
| GATTCAATAAGAAACTTGTG+TGG | - | tig0020424:105623-105642 | None:intergenic | 30.0% | |
| ! | GATTTGGTCATAAACTTATG+CGG | - | tig0020424:105692-105711 | None:intergenic | 30.0% |
| !!! | TGATGTTACTTTTGGTGATT+TGG | - | tig0020424:105708-105727 | None:intergenic | 30.0% |
| GATTTGATCAGAAACTTATG+TGG | - | tig0020424:105761-105780 | None:intergenic | 30.0% | |
| !! | ATGGATTAGTGTGTTTGAAT+AGG | + | tig0020424:105915-105934 | Msa1381320:CDS | 30.0% |
| ACATATTTCTTGCTCTTCAA+TGG | - | tig0020424:106067-106086 | None:intergenic | 30.0% | |
| ! | ATGTTCTTAAATTTTGGACG+GGG | - | tig0020424:106151-106170 | None:intergenic | 30.0% |
| CACATAGTAAGTAGTAACCA+TGG | + | tig0020424:103813-103832 | Msa1381320:exon | 35.0% | |
| ACATATTACGTTGTCTAGGT+GGG | - | tig0020424:103849-103868 | None:intergenic | 35.0% | |
| AACATATTACGTTGTCTAGG+TGG | - | tig0020424:103850-103869 | None:intergenic | 35.0% | |
| GCTAACATATTACGTTGTCT+AGG | - | tig0020424:103853-103872 | None:intergenic | 35.0% | |
| AGTGTTTGTCTGATAAGAAC+AGG | - | tig0020424:103886-103905 | None:intergenic | 35.0% | |
| TATCAGACAAACACTCAACA+AGG | + | tig0020424:103891-103910 | Msa1381320:CDS | 35.0% | |
| ! | TAAGGGTGTGATTAAGGAAA+AGG | - | tig0020424:103923-103942 | None:intergenic | 35.0% |
| ! | ATGGATTAAGGGTGTGATTA+AGG | - | tig0020424:103929-103948 | None:intergenic | 35.0% |
| ACAAGAACTACAATTCACTG+TGG | + | tig0020424:104021-104040 | Msa1381320:CDS | 35.0% | |
| !! | ACTTGTTCTGAGATAAGTTC+TGG | - | tig0020424:104095-104114 | None:intergenic | 35.0% |
| GATGCAAGCAAGAATCTATT+AGG | + | tig0020424:104119-104138 | Msa1381320:CDS | 35.0% | |
| ! | CCTCCTAAATTAACTGGTTT+GGG | - | tig0020424:104480-104499 | None:intergenic | 35.0% |
| ACCTCCTAAATTAACTGGTT+TGG | - | tig0020424:104481-104500 | None:intergenic | 35.0% | |
| ACCAGTTAATTTAGGAGGTA+CGG | + | tig0020424:104482-104501 | Msa1381320:intron | 35.0% | |
| ! | CTGGAACTTAGAATTGACTT+TGG | - | tig0020424:104536-104555 | None:intergenic | 35.0% |
| AGTTCCAGCACTTAAAATTG+TGG | + | tig0020424:104548-104567 | Msa1381320:intron | 35.0% | |
| !! | AACACCACAATTTTAAGTGC+TGG | - | tig0020424:104555-104574 | None:intergenic | 35.0% |
| AATCTTGATTGCACGAGATA+AGG | - | tig0020424:104668-104687 | None:intergenic | 35.0% | |
| AATATGGTGAGAAAAAGGTC+CGG | - | tig0020424:104697-104716 | None:intergenic | 35.0% | |
| GTAGCAATATGGTGAGAAAA+AGG | - | tig0020424:104702-104721 | None:intergenic | 35.0% | |
| CTTAGTGACAAGTAGCAATA+TGG | - | tig0020424:104713-104732 | None:intergenic | 35.0% | |
| GCCAATCGTTTCAATGTAAT+TGG | - | tig0020424:104755-104774 | None:intergenic | 35.0% | |
| !! | TTTGAGATAGCGGTGTTTTT+GGG | - | tig0020424:105028-105047 | None:intergenic | 35.0% |
| !!! | TTTTGAGATAGCGGTGTTTT+TGG | - | tig0020424:105029-105048 | None:intergenic | 35.0% |
| !!! | TAGCTCTGAGTATGTTTTCA+GGG | - | tig0020424:105070-105089 | None:intergenic | 35.0% |
| !!! | TTAGCTCTGAGTATGTTTTC+AGG | - | tig0020424:105071-105090 | None:intergenic | 35.0% |
| ! | GCTCTATTTCTTGATATGAC+GGG | - | tig0020424:105353-105372 | None:intergenic | 35.0% |
| GATTTGATCCTAAACTTGTG+TGG | - | tig0020424:105386-105405 | None:intergenic | 35.0% | |
| GTTTCGATCAGAAACTTATG+AGG | - | tig0020424:105410-105429 | None:intergenic | 35.0% | |
| TCAGAAACTTATGTGGTGAT+TGG | - | tig0020424:105475-105494 | None:intergenic | 35.0% | |
| TAAGAAACTTGTGTGGTGAT+TGG | - | tig0020424:105616-105635 | None:intergenic | 35.0% | |
| ! | TGTGTTGTTGCTACTCTATT+TGG | - | tig0020424:105647-105666 | None:intergenic | 35.0% |
| TCATAAACTTATGCGGTGAT+TGG | - | tig0020424:105685-105704 | None:intergenic | 35.0% | |
| !!! | GGTGTTGTTGATGTTACTTT+TGG | - | tig0020424:105716-105735 | None:intergenic | 35.0% |
| TTCAATCTTGTAGGTCTCTT+GGG | - | tig0020424:105794-105813 | None:intergenic | 35.0% | |
| TTTGGAGAGTTCAATCTTGT+AGG | - | tig0020424:105803-105822 | None:intergenic | 35.0% | |
| ! | AGAAGTGTACAGAAAAGTGA+TGG | + | tig0020424:105896-105915 | Msa1381320:CDS | 35.0% |
| !! | AAAGTTGATGGCTTTGTTAG+TGG | + | tig0020424:106091-106110 | Msa1381320:CDS | 35.0% |
| CATATTACGTTGTCTAGGTG+GGG | - | tig0020424:103848-103867 | None:intergenic | 40.0% | |
| GAGAATGCGTTGAAAGCAAA+AGG | - | tig0020424:104154-104173 | None:intergenic | 40.0% | |
| ATTGTCTTAACCCTCTCAGA+GGG | + | tig0020424:104174-104193 | Msa1381320:intron | 40.0% | |
| ! | TTAAATAACGCCCTCTGAGA+GGG | - | tig0020424:104187-104206 | None:intergenic | 40.0% |
| ATTAAATAACGCCCTCTGAG+AGG | - | tig0020424:104188-104207 | None:intergenic | 40.0% | |
| ! | TAATCTAGAGTTCCGTCGAA+AGG | + | tig0020424:104204-104223 | Msa1381320:intron | 40.0% |
| TGGGCATCAATTAAGAACGA+AGG | - | tig0020424:104236-104255 | None:intergenic | 40.0% | |
| CCCAAACCAGTTAATTTAGG+AGG | + | tig0020424:104477-104496 | Msa1381320:CDS | 40.0% | |
| ACCGTACCTCCTAAATTAAC+TGG | - | tig0020424:104486-104505 | None:intergenic | 40.0% | |
| ATCTCGTGCAATCAAGATTG+CGG | + | tig0020424:104669-104688 | Msa1381320:intron | 40.0% | |
| ACTCAGAGCTAAAAGGAGAA+AGG | + | tig0020424:105079-105098 | Msa1381320:CDS | 40.0% | |
| !! | ACTTGTTGAGATGGTAATGG+TGG | - | tig0020424:105134-105153 | None:intergenic | 40.0% |
| ! | AGAGACCTTGAAGTTGATTC+TGG | - | tig0020424:105162-105181 | None:intergenic | 40.0% |
| ! | TAGCAAATAGGGTATCTCCT+AGG | + | tig0020424:105234-105253 | Msa1381320:CDS | 40.0% |
| ! | ATAGGGTATCTCCTAGGAAT+AGG | + | tig0020424:105240-105259 | Msa1381320:CDS | 40.0% |
| CAACAACACCACACAAGTTT+CGG | + | tig0020424:105447-105466 | Msa1381320:CDS | 40.0% | |
| TGCGTTGTTGCTACTCTATT+TGG | - | tig0020424:105506-105525 | None:intergenic | 40.0% | |
| CAACAACGCAACACAAGTTT+CGG | + | tig0020424:105516-105535 | Msa1381320:CDS | 40.0% | |
| CAACAACACCACACAAGTTT+CGG | + | tig0020424:105447-105466 | Msa1381320:CDS | 40.0% | |
| CAACAACACAACCCAAGTTT+CGG | + | tig0020424:105657-105676 | Msa1381320:CDS | 40.0% | |
| CAACAACACCACAAAAGTCT+CGG | + | tig0020424:105726-105745 | Msa1381320:CDS | 40.0% | |
| ! | GATTCAATCCGAGACTTTTG+TGG | - | tig0020424:105737-105756 | None:intergenic | 40.0% |
| GTTCAATCTTGTAGGTCTCT+TGG | - | tig0020424:105795-105814 | None:intergenic | 40.0% | |
| ACCTTTGTCTCCTTCTAGAT+TGG | + | tig0020424:105853-105872 | Msa1381320:CDS | 40.0% | |
| ACACTTCTCTTGCTCTTTGT+TGG | - | tig0020424:105884-105903 | None:intergenic | 40.0% | |
| !! | CCATCACTTTTCTTGCTCTT+TGG | - | tig0020424:105947-105966 | None:intergenic | 40.0% |
| CCAAAGAGCAAGAAAAGTGA+TGG | + | tig0020424:105944-105963 | Msa1381320:CDS | 40.0% | |
| !! | GAGCAAGAAAAGTGATGGAT+TGG | + | tig0020424:105949-105968 | Msa1381320:CDS | 40.0% |
| CAAGAGTTCTCCAAAGAGAT+TGG | + | tig0020424:105982-106001 | Msa1381320:CDS | 40.0% | |
| TTTGATGCAGCCAATCTCTT+TGG | - | tig0020424:105995-106014 | None:intergenic | 40.0% | |
| CTTACTATGTGTGATCCACG+CGG | - | tig0020424:103804-103823 | None:intergenic | 45.0% | |
| TTTGAAGGTGGATCAGTGCA+TGG | + | tig0020424:103991-104010 | Msa1381320:intron | 45.0% | |
| GAACTACAATTCACTGTGGC+AGG | + | tig0020424:104025-104044 | Msa1381320:CDS | 45.0% | |
| !! | AGATAAGTTCTGGTGCTACG+AGG | - | tig0020424:104085-104104 | None:intergenic | 45.0% |
| CATTGTCTTAACCCTCTCAG+AGG | + | tig0020424:104173-104192 | Msa1381320:intron | 45.0% | |
| CGAAGGAACAATCCTTTCGA+CGG | - | tig0020424:104219-104238 | None:intergenic | 45.0% | |
| CCAAATTAGCCCACCGAAAT+TGG | - | tig0020424:104268-104287 | None:intergenic | 45.0% | |
| !! | CCAATTTCGGTGGGCTAATT+TGG | + | tig0020424:104265-104284 | Msa1381320:intron | 45.0% |
| TGCACAAAAAACATCTCCGC+TGG | + | tig0020424:104446-104465 | Msa1381320:CDS | 45.0% | |
| GCACAAAAAACATCTCCGCT+GGG | + | tig0020424:104447-104466 | Msa1381320:CDS | 45.0% | |
| CACAAAAAACATCTCCGCTG+GGG | + | tig0020424:104448-104467 | Msa1381320:CDS | 45.0% | |
| TGTGTTTGATGCAGCCTCAA+TGG | + | tig0020424:104611-104630 | Msa1381320:intron | 45.0% | |
| CGATTGGCATTCGTGAGTTT+CGG | + | tig0020424:104767-104786 | Msa1381320:intron | 45.0% | |
| GATTGGCATTCGTGAGTTTC+GGG | + | tig0020424:104768-104787 | Msa1381320:intron | 45.0% | |
| GTAACTTTGATGCAGCTGAG+TGG | + | tig0020424:104886-104905 | Msa1381320:intron | 45.0% | |
| TCATTGCCTGCAATGCTTGT+AGG | + | tig0020424:104918-104937 | Msa1381320:CDS | 45.0% | |
| ! | GTTTCACCTACAAGCATTGC+AGG | - | tig0020424:104927-104946 | None:intergenic | 45.0% |
| TGGTACAAAATTTGCCACCG+AGG | + | tig0020424:105001-105020 | Msa1381320:CDS | 45.0% | |
| ! | CGCACTTGTTGAGATGGTAA+TGG | - | tig0020424:105137-105156 | None:intergenic | 45.0% |
| GCGTTCCAGAATCAACTTCA+AGG | + | tig0020424:105154-105173 | Msa1381320:CDS | 45.0% | |
| TATCTCCTAGGAATAGGCCA+TGG | + | tig0020424:105246-105265 | Msa1381320:CDS | 45.0% | |
| ATCTCCTAGGAATAGGCCAT+GGG | + | tig0020424:105247-105266 | Msa1381320:CDS | 45.0% | |
| ! | AGTACTGTCTTTCTAGCCCA+TGG | - | tig0020424:105266-105285 | None:intergenic | 45.0% |
| CAACAACGCCACACAAGTTT+AGG | + | tig0020424:105375-105394 | Msa1381320:CDS | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | - | tig0020424:105458-105477 | None:intergenic | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | - | tig0020424:105458-105477 | None:intergenic | 45.0% | |
| GGTGATTGGATCCGAAACTT+GGG | - | tig0020424:105461-105480 | None:intergenic | 45.0% | |
| GATGCAGCACGATATCTCTT+TGG | - | tig0020424:105821-105840 | None:intergenic | 45.0% | |
| GCCAATCTAGAAGGAGACAA+AGG | - | tig0020424:105857-105876 | None:intergenic | 45.0% | |
| ATCTTTCTCTCCTTCGAGAC+TGG | + | tig0020424:106024-106043 | Msa1381320:CDS | 45.0% | |
| GGCAATTGTACTGTTGTAGC+TGG | - | tig0020424:106130-106149 | None:intergenic | 45.0% | |
| ! | ACGTTGTCTAGGTGGGGTTT+TGG | - | tig0020424:103842-103861 | None:intergenic | 50.0% |
| AGGTGGATCAGTGCATGGAT+CGG | + | tig0020424:103996-104015 | Msa1381320:intron | 50.0% | |
| CTACAATTCACTGTGGCAGG+TGG | + | tig0020424:104028-104047 | Msa1381320:CDS | 50.0% | |
| ! | GGTGGAACAAAGCTGGTTTC+TGG | + | tig0020424:104046-104065 | Msa1381320:CDS | 50.0% |
| CCGAAATTGGCATCTGGGTT+GGG | - | tig0020424:104255-104274 | None:intergenic | 50.0% | |
| CCCAACCCAGATGCCAATTT+CGG | + | tig0020424:104252-104271 | Msa1381320:intron | 50.0% | |
| ACCGAAATTGGCATCTGGGT+TGG | - | tig0020424:104256-104275 | None:intergenic | 50.0% | |
| AACCCAGATGCCAATTTCGG+TGG | + | tig0020424:104255-104274 | Msa1381320:intron | 50.0% | |
| ACCCAGATGCCAATTTCGGT+GGG | + | tig0020424:104256-104275 | Msa1381320:intron | 50.0% | |
| GAGACAGAGAGAGCAAGCAA+AGG | - | tig0020424:104510-104529 | None:intergenic | 50.0% | |
| CCACAACGTTACTGCCATTG+AGG | - | tig0020424:104628-104647 | None:intergenic | 50.0% | |
| CCTCAATGGCAGTAACGTTG+TGG | + | tig0020424:104625-104644 | Msa1381320:intron | 50.0% | |
| TGCAATCAAGATTGCGGCAC+CGG | + | tig0020424:104675-104694 | Msa1381320:intron | 50.0% | |
| !!! | TAGCGGTGTTTTTGGGTCCT+CGG | - | tig0020424:105021-105040 | None:intergenic | 50.0% |
| ! | CTGGAACGCACTTGTTGAGA+TGG | - | tig0020424:105143-105162 | None:intergenic | 50.0% |
| CGGTGATTGGATCCGAAACT+TGG | - | tig0020424:105531-105550 | None:intergenic | 50.0% | |
| CTTGTAGGTCTCTTGGGTGA+AGG | - | tig0020424:105788-105807 | None:intergenic | 50.0% | |
| GTTGGTGCAGCCAATCTAGA+AGG | - | tig0020424:105866-105885 | None:intergenic | 50.0% | |
| CTCCTTCGAGACTGGTAACA+AGG | + | tig0020424:106032-106051 | Msa1381320:CDS | 50.0% | |
| !! | AGCCTTGTTACCAGTCTCGA+AGG | - | tig0020424:106037-106056 | None:intergenic | 50.0% |
| ACGTTACGTTAGGATCCGCG+TGG | + | tig0020424:103786-103805 | Msa1381320:five_prime_UTR | 55.0% | |
| !! | AGGTGGGGTTTTGGCAACCA+TGG | - | tig0020424:103833-103852 | None:intergenic | 55.0% |
| TGTGGCAGGTGGAACAAAGC+TGG | + | tig0020424:104039-104058 | Msa1381320:CDS | 55.0% | |
| GCCCACCGAAATTGGCATCT+GGG | - | tig0020424:104260-104279 | None:intergenic | 55.0% | |
| AGCCCACCGAAATTGGCATC+TGG | - | tig0020424:104261-104280 | None:intergenic | 55.0% | |
| GGTTTGGGAAACTTCCCCAG+CGG | - | tig0020424:104465-104484 | None:intergenic | 55.0% | |
| CTAGCCCATGGCCTATTCCT+AGG | - | tig0020424:105254-105273 | None:intergenic | 55.0% | |
| GTAGGTCTCTTGGGTGAAGG+TGG | - | tig0020424:105785-105804 | None:intergenic | 55.0% | |
| !!! | CGGTGTTTTTGGGTCCTCGG+TGG | - | tig0020424:105018-105037 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020424 | gene | 103782 | 106322 | 103782 | ID=Msa1381320;Name=Msa1381320 |
| tig0020424 | mRNA | 103782 | 106322 | 103782 | ID=Msa1381320-mRNA-1;Parent=Msa1381320;Name=Msa1381320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|1|1|4|145|521 |
| tig0020424 | exon | 103782 | 103912 | 103782 | ID=Msa1381320-mRNA-1:exon:7442;Parent=Msa1381320-mRNA-1 |
| tig0020424 | exon | 103998 | 104140 | 103998 | ID=Msa1381320-mRNA-1:exon:7443;Parent=Msa1381320-mRNA-1 |
| tig0020424 | exon | 104434 | 104498 | 104434 | ID=Msa1381320-mRNA-1:exon:7444;Parent=Msa1381320-mRNA-1 |
| tig0020424 | exon | 104901 | 106322 | 104901 | ID=Msa1381320-mRNA-1:exon:7445;Parent=Msa1381320-mRNA-1 |
| tig0020424 | five_prime_UTR | 103782 | 103831 | 103782 | ID=Msa1381320-mRNA-1:five_prime_utr;Parent=Msa1381320-mRNA-1 |
| tig0020424 | CDS | 103832 | 103912 | 103832 | ID=Msa1381320-mRNA-1:cds;Parent=Msa1381320-mRNA-1 |
| tig0020424 | CDS | 103998 | 104140 | 103998 | ID=Msa1381320-mRNA-1:cds;Parent=Msa1381320-mRNA-1 |
| tig0020424 | CDS | 104434 | 104498 | 104434 | ID=Msa1381320-mRNA-1:cds;Parent=Msa1381320-mRNA-1 |
| tig0020424 | CDS | 104901 | 106177 | 104901 | ID=Msa1381320-mRNA-1:cds;Parent=Msa1381320-mRNA-1 |
| tig0020424 | three_prime_UTR | 106178 | 106322 | 106178 | ID=Msa1381320-mRNA-1:three_prime_utr;Parent=Msa1381320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
