Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431530 | PNY09408.1 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431530 | sp|Q197W8|TANA_ARATH | 43.011 | 465 | 219 | 20 | 1 | 435 | 1 | 449 | 2.63e-92 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431530 | A0A2K3P284 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381320 | Msa1431530 | 0.861246 | 1.174007e-63 | -8.615850e-47 |
| Msa1083640 | Msa1431530 | 0.990183 | 1.941723e-181 | -8.615850e-47 |
| Msa1128630 | Msa1431530 | 0.887194 | 1.767609e-72 | -8.615850e-47 |
| Msa1164810 | Msa1431530 | 0.992261 | 3.066490e-192 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431530 | MtrunA17_Chr7g0272861 | 71.106 | 443 | 87 | 7 | 1 | 438 | 1 | 407 | 0.0 | 569 |
| Msa1431530 | MtrunA17_Chr7g0272861 | 83.425 | 181 | 29 | 1 | 342 | 521 | 249 | 429 | 4.44e-87 | 275 |
| Msa1431530 | MtrunA17_Chr1g0191861 | 74.603 | 63 | 16 | 0 | 28 | 90 | 9 | 71 | 1.56e-26 | 102 |
| Msa1431530 | MtrunA17_Chr1g0191871 | 68.182 | 66 | 19 | 2 | 102 | 165 | 1 | 66 | 2.11e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431530 | AT3G05330.1 | 42.702 | 459 | 217 | 20 | 1 | 429 | 1 | 443 | 4.96e-91 | 286 |
Find 104 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATATGTTCTTAAATTT+TGG | 0.039887 | tig0026841:+56258 | None:intergenic |
| TTTGACCATATTAATATATT+TGG | 0.147711 | tig0026841:-56121 | Msa1431530:three_prime_UTR |
| TTTCCCAAACCAGTTAATTT+AGG | 0.199173 | tig0026841:-57937 | Msa1431530:CDS |
| AAAACAAGTATTTAGCAAAT+AGG | 0.240085 | tig0026841:-57190 | Msa1431530:CDS |
| TGTGTTGTTGCTACTCTATT+TGG | 0.253333 | tig0026841:+56768 | None:intergenic |
| GGTGGAACAAAGCTGGTTTC+TGG | 0.263887 | tig0026841:-58364 | Msa1431530:CDS |
| GTTGTTGATGTTACTCTATT+TGG | 0.265736 | tig0026841:+56981 | None:intergenic |
| GTTGTTGATGTTACTCTATT+TGG | 0.275395 | tig0026841:+56840 | None:intergenic |
| ACCTCCTAAATTAACTGGTT+TGG | 0.288483 | tig0026841:+57933 | None:intergenic |
| AGAGACCTTGAAGTTGATTC+TGG | 0.292172 | tig0026841:+57253 | None:intergenic |
| CCTCCTAAATTAACTGGTTT+GGG | 0.296949 | tig0026841:+57934 | None:intergenic |
| TGTTACTCTATTTGGTGATT+TGG | 0.305045 | tig0026841:+56848 | None:intergenic |
| TTTGATGCAGCCAATCTCTT+TGG | 0.305480 | tig0026841:+56420 | None:intergenic |
| TGCGTTGTTGCTACTCTATT+TGG | 0.307896 | tig0026841:+56909 | None:intergenic |
| ACCTTTGTCTCCTTCTAGAT+TGG | 0.315687 | tig0026841:-56559 | Msa1431530:CDS |
| GAAGAAGTTGAAGAGAATAA+AGG | 0.317119 | tig0026841:+57116 | None:intergenic |
| CAACAACGCCACACAAGTTT+AGG | 0.321234 | tig0026841:-57037 | Msa1431530:CDS |
| GATGCAAGCAAGAATCTATT+AGG | 0.332220 | tig0026841:-58291 | Msa1431530:intron |
| TTCATTGTATTTATTTCATA+AGG | 0.339782 | tig0026841:-56223 | Msa1431530:three_prime_UTR |
| AAAACATACTCAGAGCTAAA+AGG | 0.339987 | tig0026841:-57340 | Msa1431530:CDS |
| ACACTTCTCTTGCTCTTTGT+TGG | 0.348806 | tig0026841:+56531 | None:intergenic |
| ACCGTACCTCCTAAATTAAC+TGG | 0.361045 | tig0026841:+57928 | None:intergenic |
| TTTGGAGAGTTCAATCTTGT+AGG | 0.363209 | tig0026841:+56612 | None:intergenic |
| AAACAAGTATTTAGCAAATA+GGG | 0.363248 | tig0026841:-57189 | Msa1431530:CDS |
| GTTCAATCTTGTAGGTCTCT+TGG | 0.368805 | tig0026841:+56620 | None:intergenic |
| ACGTTGTCTAGGTGGGGTTT+TGG | 0.369866 | tig0026841:+58571 | None:intergenic |
| GATGCAGCACGATATCTCTT+TGG | 0.376546 | tig0026841:+56594 | None:intergenic |
| AAAGTTGATGGCTTTGTTAG+TGG | 0.379685 | tig0026841:-56321 | Msa1431530:CDS |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | tig0026841:-56824 | Msa1431530:CDS |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | tig0026841:-56965 | Msa1431530:CDS |
| TTATAAACTTATGCGGTGAT+TGG | 0.387389 | tig0026841:+56871 | None:intergenic |
| GGTGTTGTTGATGTTACTTT+TGG | 0.392704 | tig0026841:+56699 | None:intergenic |
| ACTTGTTCTGAGATAAGTTC+TGG | 0.395882 | tig0026841:+58318 | None:intergenic |
| TCATAAACTTATGCGGTGAT+TGG | 0.398357 | tig0026841:+56730 | None:intergenic |
| ACATATTTCTTGCTCTTCAA+TGG | 0.405712 | tig0026841:+56348 | None:intergenic |
| TTCAATCTTGTAGGTCTCTT+GGG | 0.406930 | tig0026841:+56621 | None:intergenic |
| CGGTGATTGGATCCGAAACT+TGG | 0.411229 | tig0026841:+56743 | None:intergenic |
| AAATTCCAAATATATTAATA+TGG | 0.414532 | tig0026841:+56116 | None:intergenic |
| GTTTCACCTACAAGCATTGC+AGG | 0.415594 | tig0026841:+57488 | None:intergenic |
| AAGAAGTTGAAGAGAATAAA+GGG | 0.417357 | tig0026841:+57117 | None:intergenic |
| GTTGGTGCAGCCAATCTAGA+AGG | 0.417865 | tig0026841:+56549 | None:intergenic |
| AGTGTTTGTCTGATAAGAAC+AGG | 0.423320 | tig0026841:+58527 | None:intergenic |
| TCAGAAACTTATGTGGTGAT+TGG | 0.427597 | tig0026841:+56940 | None:intergenic |
| CAACAACGCAACACAAGTTT+CGG | 0.429480 | tig0026841:-56896 | Msa1431530:CDS |
| ATGGATTAGTGTGTTTGAAT+AGG | 0.436639 | tig0026841:-56497 | Msa1431530:CDS |
| CTAGCCCATGGCCTATTCCT+AGG | 0.437592 | tig0026841:+57161 | None:intergenic |
| ATCTTTCTCTCCTTCGAGAC+TGG | 0.438651 | tig0026841:-56388 | Msa1431530:CDS |
| ATAGGGTATCTCCTAGGAAT+AGG | 0.439133 | tig0026841:-57172 | Msa1431530:CDS |
| CAACAACACAACCCAAGTTT+CGG | 0.439758 | tig0026841:-56755 | Msa1431530:CDS |
| TCATTGCCTGCAATGCTTGT+AGG | 0.449054 | tig0026841:-57494 | Msa1431530:CDS |
| GCGTTCCAGAATCAACTTCA+AGG | 0.450480 | tig0026841:-57258 | Msa1431530:CDS |
| AGAGAAATAGTTTCTTCAGT+TGG | 0.467736 | tig0026841:-57431 | Msa1431530:CDS |
| TGCTCTATTTCTTGATATGA+CGG | 0.468194 | tig0026841:+57061 | None:intergenic |
| CAAGAGTTCTCCAAAGAGAT+TGG | 0.474726 | tig0026841:-56430 | Msa1431530:CDS |
| TAAGAAACTTGTGTGGTGAT+TGG | 0.482000 | tig0026841:+56799 | None:intergenic |
| GAGCAAGAAAAGTGATGGAT+TGG | 0.487892 | tig0026841:-56463 | Msa1431530:CDS |
| AGTTGAAGAGAATAAAGGGT+TGG | 0.502494 | tig0026841:+57121 | None:intergenic |
| GTTGAAGAGAATAAAGGGTT+GGG | 0.506043 | tig0026841:+57122 | None:intergenic |
| CCCAAACCAGTTAATTTAGG+AGG | 0.507986 | tig0026841:-57934 | Msa1431530:intron |
| GAACTACAATTCACTGTGGC+AGG | 0.508994 | tig0026841:-58385 | Msa1431530:CDS |
| GCTCTATTTCTTGATATGAC+GGG | 0.513767 | tig0026841:+57062 | None:intergenic |
| ACATATTACGTTGTCTAGGT+GGG | 0.516327 | tig0026841:+58564 | None:intergenic |
| GGCAATTGTACTGTTGTAGC+TGG | 0.517437 | tig0026841:+56285 | None:intergenic |
| CATATTACGTTGTCTAGGTG+GGG | 0.533124 | tig0026841:+58565 | None:intergenic |
| CTCCTTCGAGACTGGTAACA+AGG | 0.534952 | tig0026841:-56380 | Msa1431530:CDS |
| CTGGAACGCACTTGTTGAGA+TGG | 0.535724 | tig0026841:+57272 | None:intergenic |
| CCAAAGAGCAAGAAAAGTGA+TGG | 0.536346 | tig0026841:-56468 | Msa1431530:CDS |
| GTTTCGATCAGAAACTTATG+AGG | 0.538941 | tig0026841:+57005 | None:intergenic |
| TTTGAAGGTGGATCAGTGCA+TGG | 0.541390 | tig0026841:-58419 | Msa1431530:intron |
| ACTCAGAGCTAAAAGGAGAA+AGG | 0.547146 | tig0026841:-57333 | Msa1431530:CDS |
| TGTGGCAGGTGGAACAAAGC+TGG | 0.548780 | tig0026841:-58371 | Msa1431530:CDS |
| TATCTCCTAGGAATAGGCCA+TGG | 0.549739 | tig0026841:-57166 | Msa1431530:CDS |
| CTTGTAGGTCTCTTGGGTGA+AGG | 0.550040 | tig0026841:+56627 | None:intergenic |
| GCTAACATATTACGTTGTCT+AGG | 0.559526 | tig0026841:+58560 | None:intergenic |
| AGAAGTGTACAGAAAAGTGA+TGG | 0.573647 | tig0026841:-56516 | Msa1431530:CDS |
| AACATATTACGTTGTCTAGG+TGG | 0.573679 | tig0026841:+58563 | None:intergenic |
| TAGCAAATAGGGTATCTCCT+AGG | 0.574329 | tig0026841:-57178 | Msa1431530:CDS |
| GTAGGTCTCTTGGGTGAAGG+TGG | 0.578281 | tig0026841:+56630 | None:intergenic |
| AGTACTGTCTTTCTAGCCCA+TGG | 0.578757 | tig0026841:+57149 | None:intergenic |
| ATCTCCTAGGAATAGGCCAT+GGG | 0.582839 | tig0026841:-57165 | Msa1431530:CDS |
| CAACAACACCACAAAAGTCT+CGG | 0.586382 | tig0026841:-56686 | Msa1431530:CDS |
| AGCCTTGTTACCAGTCTCGA+AGG | 0.600893 | tig0026841:+56378 | None:intergenic |
| CGCACTTGTTGAGATGGTAA+TGG | 0.601173 | tig0026841:+57278 | None:intergenic |
| GATTTGATCAGAAACTTATG+TGG | 0.606522 | tig0026841:+56654 | None:intergenic |
| CTACAATTCACTGTGGCAGG+TGG | 0.624153 | tig0026841:-58382 | Msa1431530:CDS |
| AGGTGGATCAGTGCATGGAT+CGG | 0.626730 | tig0026841:-58414 | Msa1431530:CDS |
| GGTGATTGGATCCGAAACTT+GGG | 0.626899 | tig0026841:+56744 | None:intergenic |
| GATTCAATCAGAAACTTATG+TGG | 0.637657 | tig0026841:+56933 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | tig0026841:+56816 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | tig0026841:+56957 | None:intergenic |
| GATTTGGTTATAAACTTATG+CGG | 0.647613 | tig0026841:+56864 | None:intergenic |
| GATTTGATCCTAAACTTGTG+TGG | 0.652691 | tig0026841:+57029 | None:intergenic |
| GCCAATCTAGAAGGAGACAA+AGG | 0.660648 | tig0026841:+56558 | None:intergenic |
| CACATAGTAAGTAGTAACCA+TGG | 0.662199 | tig0026841:-58597 | Msa1431530:exon |
| TATCAGACAAACACTCAACA+AGG | 0.669769 | tig0026841:-58519 | Msa1431530:intron |
| GTAACTTTGATGCAGCTGAG+TGG | 0.671723 | tig0026841:-57526 | Msa1431530:intron |
| GATTTGGTCATAAACTTATG+CGG | 0.690111 | tig0026841:+56723 | None:intergenic |
| AGATAAGTTCTGGTGCTACG+AGG | 0.714981 | tig0026841:+58328 | None:intergenic |
| ACTTGTTGAGATGGTAATGG+TGG | 0.716854 | tig0026841:+57281 | None:intergenic |
| GATTCAATAAGAAACTTGTG+TGG | 0.717680 | tig0026841:+56792 | None:intergenic |
| TGGTACAAAATTTGCCACCG+AGG | 0.726257 | tig0026841:-57411 | Msa1431530:CDS |
| GGTTTGGGAAACTTCCCCAG+CGG | 0.746127 | tig0026841:+57949 | None:intergenic |
| CTTACTATGTGTGATCCACG+CGG | 0.776784 | tig0026841:+58609 | None:intergenic |
| ACAAGAACTACAATTCACTG+TGG | 0.807781 | tig0026841:-58389 | Msa1431530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAAAATGGATTAA+GGG | + | tig0026841:56270-56289 | None:intergenic | 10.0% |
| !!! | AATTAAAATAAAATGGATTA+AGG | + | tig0026841:56271-56290 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTTTGAAAACT+CGG | + | tig0026841:56685-56704 | None:intergenic | 10.0% |
| !! | AAATTCCAAATATATTAATA+TGG | + | tig0026841:58627-58646 | None:intergenic | 10.0% |
| !! | TTCAGGTAATTAAAATAAAA+TGG | + | tig0026841:56278-56297 | None:intergenic | 15.0% |
| !! | ATAACAATTACATATAATTC+AGG | + | tig0026841:56295-56314 | None:intergenic | 15.0% |
| !! | TTCATTGTATTTATTTCATA+AGG | - | tig0026841:58517-58536 | Msa1431530:intron | 15.0% |
| !! | TTTGACCATATTAATATATT+TGG | - | tig0026841:58619-58638 | Msa1431530:five_prime_UTR | 15.0% |
| !!! | AATTGTTATGATTCTTTTGA+AGG | - | tig0026841:56306-56325 | Msa1431530:CDS | 20.0% |
| !! | AAAACAAGTATTTAGCAAAT+AGG | - | tig0026841:57550-57569 | Msa1431530:intron | 20.0% |
| !! | AAACAAGTATTTAGCAAATA+GGG | - | tig0026841:57551-57570 | Msa1431530:intron | 20.0% |
| !! | AAATATGTACAAAAAGTTGA+TGG | - | tig0026841:58407-58426 | Msa1431530:CDS | 20.0% |
| !!! | ATATGTTCTTAAATTTTGGA+CGG | + | tig0026841:58481-58500 | None:intergenic | 20.0% |
| !!! | CACAATATGTTCTTAAATTT+TGG | + | tig0026841:58485-58504 | None:intergenic | 20.0% |
| ! | ATGTTATGTTGCTAATTTGA+AGG | - | tig0026841:56741-56760 | Msa1431530:CDS | 25.0% |
| ! | GAATTGAGAATAAAGAATTG+AGG | + | tig0026841:57172-57191 | None:intergenic | 25.0% |
| !! | AACTGTTGTAGAAATTTTAC+AGG | - | tig0026841:57272-57291 | Msa1431530:CDS | 25.0% |
| !!! | TCAAAGTCTCTTACTTTTTT+TGG | + | tig0026841:57516-57535 | None:intergenic | 25.0% |
| ! | AAGAAGTTGAAGAGAATAAA+GGG | + | tig0026841:57626-57645 | None:intergenic | 25.0% |
| !! | GATTTGGTTATAAACTTATG+CGG | + | tig0026841:57879-57898 | None:intergenic | 25.0% |
| !! | TATGTTCTTAAATTTTGGAC+GGG | + | tig0026841:58480-58499 | None:intergenic | 25.0% |
| !! | TGTTATGATTCTTTTGAAGG+TGG | - | tig0026841:56309-56328 | Msa1431530:CDS | 30.0% |
| TTTCCCAAACCAGTTAATTT+AGG | - | tig0026841:56803-56822 | Msa1431530:CDS | 30.0% | |
| ACTAAGCTATTATTCACGAT+TGG | - | tig0026841:57056-57075 | Msa1431530:CDS | 30.0% | |
| ACCAATTACATTGAAACGAT+TGG | - | tig0026841:57080-57099 | Msa1431530:CDS | 30.0% | |
| TGAGAATAAAGAATTGAGGA+GGG | + | tig0026841:57168-57187 | None:intergenic | 30.0% | |
| TTGAGAATAAAGAATTGAGG+AGG | + | tig0026841:57169-57188 | None:intergenic | 30.0% | |
| AGAGAAATAGTTTCTTCAGT+TGG | - | tig0026841:57309-57328 | Msa1431530:CDS | 30.0% | |
| !!! | TTGTTTGAGTTTTGAGATAG+CGG | + | tig0026841:57366-57385 | None:intergenic | 30.0% |
| AAAACATACTCAGAGCTAAA+AGG | - | tig0026841:57400-57419 | Msa1431530:CDS | 30.0% | |
| !!! | AAGTCTCTTACTTTTTTTGG+AGG | + | tig0026841:57513-57532 | None:intergenic | 30.0% |
| GAAGAAGTTGAAGAGAATAA+AGG | + | tig0026841:57627-57646 | None:intergenic | 30.0% | |
| ! | TGCTCTATTTCTTGATATGA+CGG | + | tig0026841:57682-57701 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | + | tig0026841:57762-57781 | None:intergenic | 30.0% | |
| GATTCAATCAGAAACTTATG+TGG | + | tig0026841:57810-57829 | None:intergenic | 30.0% | |
| TTATAAACTTATGCGGTGAT+TGG | + | tig0026841:57872-57891 | None:intergenic | 30.0% | |
| ! | TGTTACTCTATTTGGTGATT+TGG | + | tig0026841:57895-57914 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | + | tig0026841:57762-57781 | None:intergenic | 30.0% | |
| GATTCAATAAGAAACTTGTG+TGG | + | tig0026841:57951-57970 | None:intergenic | 30.0% | |
| ! | GATTTGGTCATAAACTTATG+CGG | + | tig0026841:58020-58039 | None:intergenic | 30.0% |
| !!! | TGATGTTACTTTTGGTGATT+TGG | + | tig0026841:58036-58055 | None:intergenic | 30.0% |
| GATTTGATCAGAAACTTATG+TGG | + | tig0026841:58089-58108 | None:intergenic | 30.0% | |
| !! | ATGGATTAGTGTGTTTGAAT+AGG | - | tig0026841:58243-58262 | Msa1431530:intron | 30.0% |
| ACATATTTCTTGCTCTTCAA+TGG | + | tig0026841:58395-58414 | None:intergenic | 30.0% | |
| ! | ATGTTCTTAAATTTTGGACG+GGG | + | tig0026841:58479-58498 | None:intergenic | 30.0% |
| CACATAGTAAGTAGTAACCA+TGG | - | tig0026841:56143-56162 | Msa1431530:three_prime_UTR | 35.0% | |
| ACATATTACGTTGTCTAGGT+GGG | + | tig0026841:56179-56198 | None:intergenic | 35.0% | |
| AACATATTACGTTGTCTAGG+TGG | + | tig0026841:56180-56199 | None:intergenic | 35.0% | |
| GCTAACATATTACGTTGTCT+AGG | + | tig0026841:56183-56202 | None:intergenic | 35.0% | |
| AGTGTTTGTCTGATAAGAAC+AGG | + | tig0026841:56216-56235 | None:intergenic | 35.0% | |
| TATCAGACAAACACTCAACA+AGG | - | tig0026841:56221-56240 | Msa1431530:three_prime_UTR | 35.0% | |
| ! | TAAGGGTGTGATTAAGGAAA+AGG | + | tig0026841:56253-56272 | None:intergenic | 35.0% |
| ! | ATGGATTAAGGGTGTGATTA+AGG | + | tig0026841:56259-56278 | None:intergenic | 35.0% |
| ACAAGAACTACAATTCACTG+TGG | - | tig0026841:56351-56370 | Msa1431530:CDS | 35.0% | |
| !! | ACTTGTTCTGAGATAAGTTC+TGG | + | tig0026841:56425-56444 | None:intergenic | 35.0% |
| GATGCAAGCAAGAATCTATT+AGG | - | tig0026841:56449-56468 | Msa1431530:CDS | 35.0% | |
| ! | CCTCCTAAATTAACTGGTTT+GGG | + | tig0026841:56809-56828 | None:intergenic | 35.0% |
| ACCTCCTAAATTAACTGGTT+TGG | + | tig0026841:56810-56829 | None:intergenic | 35.0% | |
| ACCAGTTAATTTAGGAGGTA+CGG | - | tig0026841:56811-56830 | Msa1431530:CDS | 35.0% | |
| ! | CTGGAACTTAGAATTGACTT+TGG | + | tig0026841:56865-56884 | None:intergenic | 35.0% |
| AGTTCCAGCACTTAAAATTG+TGG | - | tig0026841:56877-56896 | Msa1431530:CDS | 35.0% | |
| !! | AACACCACAATTTTAAGTGC+TGG | + | tig0026841:56884-56903 | None:intergenic | 35.0% |
| AATCTTGATTGCACGAGATA+AGG | + | tig0026841:56997-57016 | None:intergenic | 35.0% | |
| AATATGGTGAGAAAAAGGTC+CGG | + | tig0026841:57026-57045 | None:intergenic | 35.0% | |
| GTAGCAATATGGTGAGAAAA+AGG | + | tig0026841:57031-57050 | None:intergenic | 35.0% | |
| CTTAGTGACAAGTAGCAATA+TGG | + | tig0026841:57042-57061 | None:intergenic | 35.0% | |
| GCCAATCGTTTCAATGTAAT+TGG | + | tig0026841:57084-57103 | None:intergenic | 35.0% | |
| !! | TTTGAGATAGCGGTGTTTTT+GGG | + | tig0026841:57356-57375 | None:intergenic | 35.0% |
| !!! | TTTTGAGATAGCGGTGTTTT+TGG | + | tig0026841:57357-57376 | None:intergenic | 35.0% |
| !!! | TAGCTCTGAGTATGTTTTCA+GGG | + | tig0026841:57398-57417 | None:intergenic | 35.0% |
| !!! | TTAGCTCTGAGTATGTTTTC+AGG | + | tig0026841:57399-57418 | None:intergenic | 35.0% |
| GTTGAAGAGAATAAAGGGTT+GGG | + | tig0026841:57621-57640 | None:intergenic | 35.0% | |
| AGTTGAAGAGAATAAAGGGT+TGG | + | tig0026841:57622-57641 | None:intergenic | 35.0% | |
| ! | GCTCTATTTCTTGATATGAC+GGG | + | tig0026841:57681-57700 | None:intergenic | 35.0% |
| GATTTGATCCTAAACTTGTG+TGG | + | tig0026841:57714-57733 | None:intergenic | 35.0% | |
| GTTTCGATCAGAAACTTATG+AGG | + | tig0026841:57738-57757 | None:intergenic | 35.0% | |
| TCAGAAACTTATGTGGTGAT+TGG | + | tig0026841:57803-57822 | None:intergenic | 35.0% | |
| TAAGAAACTTGTGTGGTGAT+TGG | + | tig0026841:57944-57963 | None:intergenic | 35.0% | |
| ! | TGTGTTGTTGCTACTCTATT+TGG | + | tig0026841:57975-57994 | None:intergenic | 35.0% |
| TCATAAACTTATGCGGTGAT+TGG | + | tig0026841:58013-58032 | None:intergenic | 35.0% | |
| !!! | GGTGTTGTTGATGTTACTTT+TGG | + | tig0026841:58044-58063 | None:intergenic | 35.0% |
| TTCAATCTTGTAGGTCTCTT+GGG | + | tig0026841:58122-58141 | None:intergenic | 35.0% | |
| TTTGGAGAGTTCAATCTTGT+AGG | + | tig0026841:58131-58150 | None:intergenic | 35.0% | |
| ! | AGAAGTGTACAGAAAAGTGA+TGG | - | tig0026841:58224-58243 | Msa1431530:intron | 35.0% |
| !! | AAAGTTGATGGCTTTGTTAG+TGG | - | tig0026841:58419-58438 | Msa1431530:intron | 35.0% |
| CATATTACGTTGTCTAGGTG+GGG | + | tig0026841:56178-56197 | None:intergenic | 40.0% | |
| GAGAATGCGTTGAAAGCAAA+AGG | + | tig0026841:56484-56503 | None:intergenic | 40.0% | |
| ! | TTAAATAACGCCCTCTGAGA+GGG | + | tig0026841:56516-56535 | None:intergenic | 40.0% |
| ATTAAATAACGCCCTCTGAG+AGG | + | tig0026841:56517-56536 | None:intergenic | 40.0% | |
| ! | TAATCTAGAGTTCCGTCGAA+AGG | - | tig0026841:56533-56552 | Msa1431530:CDS | 40.0% |
| TGGGCATCAATTAAGAACGA+AGG | + | tig0026841:56565-56584 | None:intergenic | 40.0% | |
| CCCAAACCAGTTAATTTAGG+AGG | - | tig0026841:56806-56825 | Msa1431530:CDS | 40.0% | |
| ACCGTACCTCCTAAATTAAC+TGG | + | tig0026841:56815-56834 | None:intergenic | 40.0% | |
| ATCTCGTGCAATCAAGATTG+CGG | - | tig0026841:56998-57017 | Msa1431530:CDS | 40.0% | |
| ACTCAGAGCTAAAAGGAGAA+AGG | - | tig0026841:57407-57426 | Msa1431530:CDS | 40.0% | |
| !! | ACTTGTTGAGATGGTAATGG+TGG | + | tig0026841:57462-57481 | None:intergenic | 40.0% |
| ! | AGAGACCTTGAAGTTGATTC+TGG | + | tig0026841:57490-57509 | None:intergenic | 40.0% |
| ! | TAGCAAATAGGGTATCTCCT+AGG | - | tig0026841:57562-57581 | Msa1431530:intron | 40.0% |
| ! | ATAGGGTATCTCCTAGGAAT+AGG | - | tig0026841:57568-57587 | Msa1431530:intron | 40.0% |
| CAACAACACCACACAAGTTT+CGG | - | tig0026841:57775-57794 | Msa1431530:intron | 40.0% | |
| TGCGTTGTTGCTACTCTATT+TGG | + | tig0026841:57834-57853 | None:intergenic | 40.0% | |
| CAACAACGCAACACAAGTTT+CGG | - | tig0026841:57844-57863 | Msa1431530:intron | 40.0% | |
| CAACAACACCACACAAGTTT+CGG | - | tig0026841:57775-57794 | Msa1431530:intron | 40.0% | |
| CAACAACACAACCCAAGTTT+CGG | - | tig0026841:57985-58004 | Msa1431530:intron | 40.0% | |
| CAACAACACCACAAAAGTCT+CGG | - | tig0026841:58054-58073 | Msa1431530:intron | 40.0% | |
| ! | GATTCAATCCGAGACTTTTG+TGG | + | tig0026841:58065-58084 | None:intergenic | 40.0% |
| GTTCAATCTTGTAGGTCTCT+TGG | + | tig0026841:58123-58142 | None:intergenic | 40.0% | |
| ACCTTTGTCTCCTTCTAGAT+TGG | - | tig0026841:58181-58200 | Msa1431530:intron | 40.0% | |
| ACACTTCTCTTGCTCTTTGT+TGG | + | tig0026841:58212-58231 | None:intergenic | 40.0% | |
| !! | CCATCACTTTTCTTGCTCTT+TGG | + | tig0026841:58275-58294 | None:intergenic | 40.0% |
| CCAAAGAGCAAGAAAAGTGA+TGG | - | tig0026841:58272-58291 | Msa1431530:intron | 40.0% | |
| !! | GAGCAAGAAAAGTGATGGAT+TGG | - | tig0026841:58277-58296 | Msa1431530:intron | 40.0% |
| CAAGAGTTCTCCAAAGAGAT+TGG | - | tig0026841:58310-58329 | Msa1431530:CDS | 40.0% | |
| TTTGATGCAGCCAATCTCTT+TGG | + | tig0026841:58323-58342 | None:intergenic | 40.0% | |
| CTTACTATGTGTGATCCACG+CGG | + | tig0026841:56134-56153 | None:intergenic | 45.0% | |
| TTTGAAGGTGGATCAGTGCA+TGG | - | tig0026841:56321-56340 | Msa1431530:CDS | 45.0% | |
| GAACTACAATTCACTGTGGC+AGG | - | tig0026841:56355-56374 | Msa1431530:CDS | 45.0% | |
| !! | AGATAAGTTCTGGTGCTACG+AGG | + | tig0026841:56415-56434 | None:intergenic | 45.0% |
| TCATTGTCTTACCCTCTCAG+AGG | - | tig0026841:56502-56521 | Msa1431530:CDS | 45.0% | |
| CATTGTCTTACCCTCTCAGA+GGG | - | tig0026841:56503-56522 | Msa1431530:CDS | 45.0% | |
| CGAAGGAACAATCCTTTCGA+CGG | + | tig0026841:56548-56567 | None:intergenic | 45.0% | |
| CCAAATTAGCCCACCGAAAT+TGG | + | tig0026841:56597-56616 | None:intergenic | 45.0% | |
| !! | CCAATTTCGGTGGGCTAATT+TGG | - | tig0026841:56594-56613 | Msa1431530:CDS | 45.0% |
| ! | TGGGCTAATTTGGCTTCTTC+AGG | - | tig0026841:56604-56623 | Msa1431530:CDS | 45.0% |
| TGCACAAAAAACATCTCCGC+TGG | - | tig0026841:56775-56794 | Msa1431530:CDS | 45.0% | |
| GCACAAAAAACATCTCCGCT+GGG | - | tig0026841:56776-56795 | Msa1431530:CDS | 45.0% | |
| CACAAAAAACATCTCCGCTG+GGG | - | tig0026841:56777-56796 | Msa1431530:CDS | 45.0% | |
| TGTGTTTGATGCAGCCTCAA+TGG | - | tig0026841:56940-56959 | Msa1431530:CDS | 45.0% | |
| CGATTGGCATTCGTGAGTTT+CGG | - | tig0026841:57096-57115 | Msa1431530:CDS | 45.0% | |
| GATTGGCATTCGTGAGTTTC+GGG | - | tig0026841:57097-57116 | Msa1431530:CDS | 45.0% | |
| GTAACTTTGATGCAGCTGAG+TGG | - | tig0026841:57214-57233 | Msa1431530:CDS | 45.0% | |
| TCATTGCCTGCAATGCTTGT+AGG | - | tig0026841:57246-57265 | Msa1431530:CDS | 45.0% | |
| ! | GTTTCACCTACAAGCATTGC+AGG | + | tig0026841:57255-57274 | None:intergenic | 45.0% |
| TGGTACAAAATTTGCCACCG+AGG | - | tig0026841:57329-57348 | Msa1431530:CDS | 45.0% | |
| ! | CGCACTTGTTGAGATGGTAA+TGG | + | tig0026841:57465-57484 | None:intergenic | 45.0% |
| GCGTTCCAGAATCAACTTCA+AGG | - | tig0026841:57482-57501 | Msa1431530:CDS | 45.0% | |
| TATCTCCTAGGAATAGGCCA+TGG | - | tig0026841:57574-57593 | Msa1431530:intron | 45.0% | |
| ATCTCCTAGGAATAGGCCAT+GGG | - | tig0026841:57575-57594 | Msa1431530:intron | 45.0% | |
| ! | AGTACTGTCTTTCTAGCCCA+TGG | + | tig0026841:57594-57613 | None:intergenic | 45.0% |
| CAACAACGCCACACAAGTTT+AGG | - | tig0026841:57703-57722 | Msa1431530:intron | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | + | tig0026841:57786-57805 | None:intergenic | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | + | tig0026841:57786-57805 | None:intergenic | 45.0% | |
| GGTGATTGGATCCGAAACTT+GGG | + | tig0026841:57789-57808 | None:intergenic | 45.0% | |
| GATGCAGCACGATATCTCTT+TGG | + | tig0026841:58149-58168 | None:intergenic | 45.0% | |
| GCCAATCTAGAAGGAGACAA+AGG | + | tig0026841:58185-58204 | None:intergenic | 45.0% | |
| ATCTTTCTCTCCTTCGAGAC+TGG | - | tig0026841:58352-58371 | Msa1431530:CDS | 45.0% | |
| GGCAATTGTACTGTTGTAGC+TGG | + | tig0026841:58458-58477 | None:intergenic | 45.0% | |
| ! | ACGTTGTCTAGGTGGGGTTT+TGG | + | tig0026841:56172-56191 | None:intergenic | 50.0% |
| AGGTGGATCAGTGCATGGAT+CGG | - | tig0026841:56326-56345 | Msa1431530:CDS | 50.0% | |
| CTACAATTCACTGTGGCAGG+TGG | - | tig0026841:56358-56377 | Msa1431530:CDS | 50.0% | |
| ! | GGTGGAACAAAGCTGGTTTC+TGG | - | tig0026841:56376-56395 | Msa1431530:CDS | 50.0% |
| CCGAAATTGGCATCTGGGTT+GGG | + | tig0026841:56584-56603 | None:intergenic | 50.0% | |
| CCCAACCCAGATGCCAATTT+CGG | - | tig0026841:56581-56600 | Msa1431530:CDS | 50.0% | |
| ACCGAAATTGGCATCTGGGT+TGG | + | tig0026841:56585-56604 | None:intergenic | 50.0% | |
| AACCCAGATGCCAATTTCGG+TGG | - | tig0026841:56584-56603 | Msa1431530:CDS | 50.0% | |
| ACCCAGATGCCAATTTCGGT+GGG | - | tig0026841:56585-56604 | Msa1431530:CDS | 50.0% | |
| GAGACAGAGAGAGCAAGCAA+AGG | + | tig0026841:56839-56858 | None:intergenic | 50.0% | |
| CCACAACGTTACTGCCATTG+AGG | + | tig0026841:56957-56976 | None:intergenic | 50.0% | |
| CCTCAATGGCAGTAACGTTG+TGG | - | tig0026841:56954-56973 | Msa1431530:CDS | 50.0% | |
| TGCAATCAAGATTGCGGCAC+CGG | - | tig0026841:57004-57023 | Msa1431530:CDS | 50.0% | |
| !!! | TAGCGGTGTTTTTGGGTCCT+CGG | + | tig0026841:57349-57368 | None:intergenic | 50.0% |
| ! | CTGGAACGCACTTGTTGAGA+TGG | + | tig0026841:57471-57490 | None:intergenic | 50.0% |
| CGGTGATTGGATCCGAAACT+TGG | + | tig0026841:57859-57878 | None:intergenic | 50.0% | |
| CTTGTAGGTCTCTTGGGTGA+AGG | + | tig0026841:58116-58135 | None:intergenic | 50.0% | |
| GTTGGTGCAGCCAATCTAGA+AGG | + | tig0026841:58194-58213 | None:intergenic | 50.0% | |
| CTCCTTCGAGACTGGTAACA+AGG | - | tig0026841:58360-58379 | Msa1431530:CDS | 50.0% | |
| !! | AGCCTTGTTACCAGTCTCGA+AGG | + | tig0026841:58365-58384 | None:intergenic | 50.0% |
| ACGTTACGTTAGGATCCGCG+TGG | - | tig0026841:56116-56135 | Msa1431530:three_prime_UTR | 55.0% | |
| !! | AGGTGGGGTTTTGGCAACCA+TGG | + | tig0026841:56163-56182 | None:intergenic | 55.0% |
| TGTGGCAGGTGGAACAAAGC+TGG | - | tig0026841:56369-56388 | Msa1431530:CDS | 55.0% | |
| GCCCACCGAAATTGGCATCT+GGG | + | tig0026841:56589-56608 | None:intergenic | 55.0% | |
| AGCCCACCGAAATTGGCATC+TGG | + | tig0026841:56590-56609 | None:intergenic | 55.0% | |
| GGTTTGGGAAACTTCCCCAG+CGG | + | tig0026841:56794-56813 | None:intergenic | 55.0% | |
| CTAGCCCATGGCCTATTCCT+AGG | + | tig0026841:57582-57601 | None:intergenic | 55.0% | |
| GTAGGTCTCTTGGGTGAAGG+TGG | + | tig0026841:58113-58132 | None:intergenic | 55.0% | |
| !!! | CGGTGTTTTTGGGTCCTCGG+TGG | + | tig0026841:57346-57365 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026841 | gene | 56112 | 58650 | 56112 | ID=Msa1431530;Name=Msa1431530 |
| tig0026841 | mRNA | 56112 | 58650 | 56112 | ID=Msa1431530-mRNA-1;Parent=Msa1431530;Name=Msa1431530-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|1|1|4|145|521 |
| tig0026841 | exon | 56112 | 57533 | 56112 | ID=Msa1431530-mRNA-1:exon:7624;Parent=Msa1431530-mRNA-1 |
| tig0026841 | exon | 57935 | 57999 | 57935 | ID=Msa1431530-mRNA-1:exon:7623;Parent=Msa1431530-mRNA-1 |
| tig0026841 | exon | 58292 | 58434 | 58292 | ID=Msa1431530-mRNA-1:exon:7622;Parent=Msa1431530-mRNA-1 |
| tig0026841 | exon | 58520 | 58650 | 58520 | ID=Msa1431530-mRNA-1:exon:7621;Parent=Msa1431530-mRNA-1 |
| tig0026841 | five_prime_UTR | 58601 | 58650 | 58601 | ID=Msa1431530-mRNA-1:five_prime_utr;Parent=Msa1431530-mRNA-1 |
| tig0026841 | CDS | 58520 | 58600 | 58520 | ID=Msa1431530-mRNA-1:cds;Parent=Msa1431530-mRNA-1 |
| tig0026841 | CDS | 58292 | 58434 | 58292 | ID=Msa1431530-mRNA-1:cds;Parent=Msa1431530-mRNA-1 |
| tig0026841 | CDS | 57935 | 57999 | 57935 | ID=Msa1431530-mRNA-1:cds;Parent=Msa1431530-mRNA-1 |
| tig0026841 | CDS | 56257 | 57533 | 56257 | ID=Msa1431530-mRNA-1:cds;Parent=Msa1431530-mRNA-1 |
| tig0026841 | three_prime_UTR | 56112 | 56256 | 56112 | ID=Msa1431530-mRNA-1:three_prime_utr;Parent=Msa1431530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
