Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164810 | PNY09408.1 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164810 | sp|Q197W8|TANA_ARATH | 43.011 | 465 | 219 | 20 | 1 | 435 | 1 | 449 | 2.63e-92 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164810 | A0A2K3P284 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1083640 | Msa1164810 | 0.993790 | 3.067391e-202 | -8.615850e-47 |
| Msa1128630 | Msa1164810 | 0.887238 | 1.700075e-72 | -8.615850e-47 |
| Msa1164810 | Msa1381320 | 0.872509 | 3.010785e-67 | -8.615850e-47 |
| Msa1164810 | Msa1431530 | 0.992261 | 3.066490e-192 | -8.615850e-47 |
| Msa0519820 | Msa1164810 | 0.800449 | 1.433641e-48 | -8.615850e-47 |
| Msa0519830 | Msa1164810 | 0.805083 | 1.583914e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164810 | MtrunA17_Chr7g0272861 | 71.106 | 443 | 87 | 7 | 1 | 438 | 1 | 407 | 0.0 | 569 |
| Msa1164810 | MtrunA17_Chr7g0272861 | 83.425 | 181 | 29 | 1 | 342 | 521 | 249 | 429 | 4.44e-87 | 275 |
| Msa1164810 | MtrunA17_Chr1g0191861 | 74.603 | 63 | 16 | 0 | 28 | 90 | 9 | 71 | 1.56e-26 | 102 |
| Msa1164810 | MtrunA17_Chr1g0191871 | 68.182 | 66 | 19 | 2 | 102 | 165 | 1 | 66 | 2.11e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164810 | AT3G05330.1 | 42.702 | 459 | 217 | 20 | 1 | 429 | 1 | 443 | 4.96e-91 | 286 |
Find 104 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATATGTTCTTAAATTT+TGG | 0.039887 | 7_4:+56570110 | None:intergenic |
| TTTGACCATATTAATATATT+TGG | 0.147711 | 7_4:-56569973 | Msa1164810:three_prime_UTR |
| TTTCCCAAACCAGTTAATTT+AGG | 0.199173 | 7_4:-56571790 | Msa1164810:CDS |
| AAAACAAGTATTTAGCAAAT+AGG | 0.240085 | 7_4:-56571042 | Msa1164810:CDS |
| TGTGTTGTTGCTACTCTATT+TGG | 0.253333 | 7_4:+56570620 | None:intergenic |
| GGTGGAACAAAGCTGGTTTC+TGG | 0.263887 | 7_4:-56572218 | Msa1164810:CDS |
| GTTGTTGATGTTACTCTATT+TGG | 0.265736 | 7_4:+56570833 | None:intergenic |
| GTTGTTGATGTTACTCTATT+TGG | 0.275395 | 7_4:+56570692 | None:intergenic |
| ACCTCCTAAATTAACTGGTT+TGG | 0.288483 | 7_4:+56571786 | None:intergenic |
| AGAGACCTTGAAGTTGATTC+TGG | 0.292172 | 7_4:+56571105 | None:intergenic |
| CCTCCTAAATTAACTGGTTT+GGG | 0.296949 | 7_4:+56571787 | None:intergenic |
| TGTTACTCTATTTGGTGATT+TGG | 0.305045 | 7_4:+56570700 | None:intergenic |
| TTTGATGCAGCCAATCTCTT+TGG | 0.305480 | 7_4:+56570272 | None:intergenic |
| TGCGTTGTTGCTACTCTATT+TGG | 0.307896 | 7_4:+56570761 | None:intergenic |
| ACCTTTGTCTCCTTCTAGAT+TGG | 0.315687 | 7_4:-56570411 | Msa1164810:CDS |
| GAAGAAGTTGAAGAGAATAA+AGG | 0.317119 | 7_4:+56570968 | None:intergenic |
| CAACAACGCCACACAAGTTT+AGG | 0.321234 | 7_4:-56570889 | Msa1164810:CDS |
| GATGCAAGCAAGAATCTATT+AGG | 0.332220 | 7_4:-56572145 | Msa1164810:intron |
| TTCATTGTATTTATTTCATA+AGG | 0.339782 | 7_4:-56570075 | Msa1164810:three_prime_UTR |
| AAAACATACTCAGAGCTAAA+AGG | 0.339987 | 7_4:-56571192 | Msa1164810:CDS |
| ACACTTCTCTTGCTCTTTGT+TGG | 0.348806 | 7_4:+56570383 | None:intergenic |
| ACCGTACCTCCTAAATTAAC+TGG | 0.361045 | 7_4:+56571781 | None:intergenic |
| TTTGGAGAGTTCAATCTTGT+AGG | 0.363209 | 7_4:+56570464 | None:intergenic |
| AAACAAGTATTTAGCAAATA+GGG | 0.363248 | 7_4:-56571041 | Msa1164810:CDS |
| GTTCAATCTTGTAGGTCTCT+TGG | 0.368805 | 7_4:+56570472 | None:intergenic |
| ACGTTGTCTAGGTGGGGTTT+TGG | 0.369866 | 7_4:+56572425 | None:intergenic |
| GATGCAGCACGATATCTCTT+TGG | 0.376546 | 7_4:+56570446 | None:intergenic |
| AAAGTTGATGGCTTTGTTAG+TGG | 0.379685 | 7_4:-56570173 | Msa1164810:CDS |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | 7_4:-56570676 | Msa1164810:CDS |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | 7_4:-56570817 | Msa1164810:CDS |
| TTATAAACTTATGCGGTGAT+TGG | 0.387389 | 7_4:+56570723 | None:intergenic |
| GGTGTTGTTGATGTTACTTT+TGG | 0.392704 | 7_4:+56570551 | None:intergenic |
| ACTTGTTCTGAGATAAGTTC+TGG | 0.395882 | 7_4:+56572172 | None:intergenic |
| TCATAAACTTATGCGGTGAT+TGG | 0.398357 | 7_4:+56570582 | None:intergenic |
| ACATATTTCTTGCTCTTCAA+TGG | 0.405712 | 7_4:+56570200 | None:intergenic |
| TTCAATCTTGTAGGTCTCTT+GGG | 0.406930 | 7_4:+56570473 | None:intergenic |
| CGGTGATTGGATCCGAAACT+TGG | 0.411229 | 7_4:+56570595 | None:intergenic |
| AAATTCCAAATATATTAATA+TGG | 0.414532 | 7_4:+56569968 | None:intergenic |
| GTTTCACCTACAAGCATTGC+AGG | 0.415594 | 7_4:+56571340 | None:intergenic |
| AAGAAGTTGAAGAGAATAAA+GGG | 0.417357 | 7_4:+56570969 | None:intergenic |
| GTTGGTGCAGCCAATCTAGA+AGG | 0.417865 | 7_4:+56570401 | None:intergenic |
| AGTGTTTGTCTGATAAGAAC+AGG | 0.423320 | 7_4:+56572381 | None:intergenic |
| TCAGAAACTTATGTGGTGAT+TGG | 0.427597 | 7_4:+56570792 | None:intergenic |
| CAACAACGCAACACAAGTTT+CGG | 0.429480 | 7_4:-56570748 | Msa1164810:CDS |
| ATGGATTAGTGTGTTTGAAT+AGG | 0.436639 | 7_4:-56570349 | Msa1164810:CDS |
| CTAGCCCATGGCCTATTCCT+AGG | 0.437592 | 7_4:+56571013 | None:intergenic |
| ATCTTTCTCTCCTTCGAGAC+TGG | 0.438651 | 7_4:-56570240 | Msa1164810:CDS |
| ATAGGGTATCTCCTAGGAAT+AGG | 0.439133 | 7_4:-56571024 | Msa1164810:CDS |
| CAACAACACAACCCAAGTTT+CGG | 0.439758 | 7_4:-56570607 | Msa1164810:CDS |
| TCATTGCCTGCAATGCTTGT+AGG | 0.449054 | 7_4:-56571346 | Msa1164810:CDS |
| GCGTTCCAGAATCAACTTCA+AGG | 0.450480 | 7_4:-56571110 | Msa1164810:CDS |
| AGAGAAATAGTTTCTTCAGT+TGG | 0.467736 | 7_4:-56571283 | Msa1164810:CDS |
| TGCTCTATTTCTTGATATGA+CGG | 0.468194 | 7_4:+56570913 | None:intergenic |
| CAAGAGTTCTCCAAAGAGAT+TGG | 0.474726 | 7_4:-56570282 | Msa1164810:CDS |
| TAAGAAACTTGTGTGGTGAT+TGG | 0.482000 | 7_4:+56570651 | None:intergenic |
| GAGCAAGAAAAGTGATGGAT+TGG | 0.487892 | 7_4:-56570315 | Msa1164810:CDS |
| AGTTGAAGAGAATAAAGGGT+TGG | 0.502494 | 7_4:+56570973 | None:intergenic |
| GTTGAAGAGAATAAAGGGTT+GGG | 0.506043 | 7_4:+56570974 | None:intergenic |
| CCCAAACCAGTTAATTTAGG+AGG | 0.507986 | 7_4:-56571787 | Msa1164810:intron |
| GAACTACAATTCACTGTGGC+AGG | 0.508994 | 7_4:-56572239 | Msa1164810:CDS |
| GCTCTATTTCTTGATATGAC+GGG | 0.513767 | 7_4:+56570914 | None:intergenic |
| ACATATTACGTTGTCTAGGT+GGG | 0.516327 | 7_4:+56572418 | None:intergenic |
| GGCAATTGTACTGTTGTAGC+TGG | 0.517437 | 7_4:+56570137 | None:intergenic |
| CATATTACGTTGTCTAGGTG+GGG | 0.533124 | 7_4:+56572419 | None:intergenic |
| CTCCTTCGAGACTGGTAACA+AGG | 0.534952 | 7_4:-56570232 | Msa1164810:CDS |
| CTGGAACGCACTTGTTGAGA+TGG | 0.535724 | 7_4:+56571124 | None:intergenic |
| CCAAAGAGCAAGAAAAGTGA+TGG | 0.536346 | 7_4:-56570320 | Msa1164810:CDS |
| GTTTCGATCAGAAACTTATG+AGG | 0.538941 | 7_4:+56570857 | None:intergenic |
| TTTGAAGGTGGATCAGTGCA+TGG | 0.541390 | 7_4:-56572273 | Msa1164810:intron |
| ACTCAGAGCTAAAAGGAGAA+AGG | 0.547146 | 7_4:-56571185 | Msa1164810:CDS |
| TGTGGCAGGTGGAACAAAGC+TGG | 0.548780 | 7_4:-56572225 | Msa1164810:CDS |
| TATCTCCTAGGAATAGGCCA+TGG | 0.549739 | 7_4:-56571018 | Msa1164810:CDS |
| CTTGTAGGTCTCTTGGGTGA+AGG | 0.550040 | 7_4:+56570479 | None:intergenic |
| GCTAACATATTACGTTGTCT+AGG | 0.559526 | 7_4:+56572414 | None:intergenic |
| AGAAGTGTACAGAAAAGTGA+TGG | 0.573647 | 7_4:-56570368 | Msa1164810:CDS |
| AACATATTACGTTGTCTAGG+TGG | 0.573679 | 7_4:+56572417 | None:intergenic |
| TAGCAAATAGGGTATCTCCT+AGG | 0.574329 | 7_4:-56571030 | Msa1164810:CDS |
| GTAGGTCTCTTGGGTGAAGG+TGG | 0.578281 | 7_4:+56570482 | None:intergenic |
| AGTACTGTCTTTCTAGCCCA+TGG | 0.578757 | 7_4:+56571001 | None:intergenic |
| ATCTCCTAGGAATAGGCCAT+GGG | 0.582839 | 7_4:-56571017 | Msa1164810:CDS |
| CAACAACACCACAAAAGTCT+CGG | 0.586382 | 7_4:-56570538 | Msa1164810:CDS |
| AGCCTTGTTACCAGTCTCGA+AGG | 0.600893 | 7_4:+56570230 | None:intergenic |
| CGCACTTGTTGAGATGGTAA+TGG | 0.601173 | 7_4:+56571130 | None:intergenic |
| GATTTGATCAGAAACTTATG+TGG | 0.606522 | 7_4:+56570506 | None:intergenic |
| CTACAATTCACTGTGGCAGG+TGG | 0.624153 | 7_4:-56572236 | Msa1164810:CDS |
| AGGTGGATCAGTGCATGGAT+CGG | 0.626730 | 7_4:-56572268 | Msa1164810:CDS |
| GGTGATTGGATCCGAAACTT+GGG | 0.626899 | 7_4:+56570596 | None:intergenic |
| GATTCAATCAGAAACTTATG+TGG | 0.637657 | 7_4:+56570785 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | 7_4:+56570668 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | 7_4:+56570809 | None:intergenic |
| GATTTGGTTATAAACTTATG+CGG | 0.647613 | 7_4:+56570716 | None:intergenic |
| GATTTGATCCTAAACTTGTG+TGG | 0.652691 | 7_4:+56570881 | None:intergenic |
| GCCAATCTAGAAGGAGACAA+AGG | 0.660648 | 7_4:+56570410 | None:intergenic |
| CACATAGTAAGTAGTAACCA+TGG | 0.662199 | 7_4:-56572451 | Msa1164810:exon |
| TATCAGACAAACACTCAACA+AGG | 0.669769 | 7_4:-56572373 | Msa1164810:intron |
| GTAACTTTGATGCAGCTGAG+TGG | 0.671723 | 7_4:-56571378 | Msa1164810:intron |
| GATTTGGTCATAAACTTATG+CGG | 0.690111 | 7_4:+56570575 | None:intergenic |
| AGATAAGTTCTGGTGCTACG+AGG | 0.714981 | 7_4:+56572182 | None:intergenic |
| ACTTGTTGAGATGGTAATGG+TGG | 0.716854 | 7_4:+56571133 | None:intergenic |
| GATTCAATAAGAAACTTGTG+TGG | 0.717680 | 7_4:+56570644 | None:intergenic |
| TGGTACAAAATTTGCCACCG+AGG | 0.726257 | 7_4:-56571263 | Msa1164810:CDS |
| GGTTTGGGAAACTTCCCCAG+CGG | 0.746127 | 7_4:+56571802 | None:intergenic |
| CTTACTATGTGTGATCCACG+CGG | 0.776784 | 7_4:+56572463 | None:intergenic |
| ACAAGAACTACAATTCACTG+TGG | 0.807781 | 7_4:-56572243 | Msa1164810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAAAATGGATTAA+GGG | + | chr7_4:56570122-56570141 | None:intergenic | 10.0% |
| !!! | AATTAAAATAAAATGGATTA+AGG | + | chr7_4:56570123-56570142 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTTTGAAAACT+CGG | + | chr7_4:56570538-56570557 | None:intergenic | 10.0% |
| !! | AAATTCCAAATATATTAATA+TGG | + | chr7_4:56572481-56572500 | None:intergenic | 10.0% |
| !! | TTCAGGTAATTAAAATAAAA+TGG | + | chr7_4:56570130-56570149 | None:intergenic | 15.0% |
| !! | ATAACAATTACATATAATTC+AGG | + | chr7_4:56570147-56570166 | None:intergenic | 15.0% |
| !! | TTCATTGTATTTATTTCATA+AGG | - | chr7_4:56572371-56572390 | Msa1164810:intron | 15.0% |
| !! | TTTGACCATATTAATATATT+TGG | - | chr7_4:56572473-56572492 | Msa1164810:five_prime_UTR | 15.0% |
| !!! | AATTGTTATGATTCTTTTGA+AGG | - | chr7_4:56570158-56570177 | Msa1164810:CDS | 20.0% |
| !! | AAAACAAGTATTTAGCAAAT+AGG | - | chr7_4:56571404-56571423 | Msa1164810:intron | 20.0% |
| !! | AAACAAGTATTTAGCAAATA+GGG | - | chr7_4:56571405-56571424 | Msa1164810:intron | 20.0% |
| !! | AAATATGTACAAAAAGTTGA+TGG | - | chr7_4:56572261-56572280 | Msa1164810:CDS | 20.0% |
| !!! | ATATGTTCTTAAATTTTGGA+CGG | + | chr7_4:56572335-56572354 | None:intergenic | 20.0% |
| !!! | CACAATATGTTCTTAAATTT+TGG | + | chr7_4:56572339-56572358 | None:intergenic | 20.0% |
| ! | ATGTTATGTTGCTAATTTGA+AGG | - | chr7_4:56570594-56570613 | Msa1164810:CDS | 25.0% |
| ! | GAATTGAGAATAAAGAATTG+AGG | + | chr7_4:56571025-56571044 | None:intergenic | 25.0% |
| !! | AACTGTTGTAGAAATTTTAC+AGG | - | chr7_4:56571126-56571145 | Msa1164810:CDS | 25.0% |
| !!! | TCAAAGTCTCTTACTTTTTT+TGG | + | chr7_4:56571370-56571389 | None:intergenic | 25.0% |
| ! | AAGAAGTTGAAGAGAATAAA+GGG | + | chr7_4:56571480-56571499 | None:intergenic | 25.0% |
| !! | GATTTGGTTATAAACTTATG+CGG | + | chr7_4:56571733-56571752 | None:intergenic | 25.0% |
| !! | TATGTTCTTAAATTTTGGAC+GGG | + | chr7_4:56572334-56572353 | None:intergenic | 25.0% |
| !! | TGTTATGATTCTTTTGAAGG+TGG | - | chr7_4:56570161-56570180 | Msa1164810:CDS | 30.0% |
| TTTCCCAAACCAGTTAATTT+AGG | - | chr7_4:56570656-56570675 | Msa1164810:CDS | 30.0% | |
| ACTAAGCTATTATTCACGAT+TGG | - | chr7_4:56570909-56570928 | Msa1164810:CDS | 30.0% | |
| ACCAATTACATTGAAACGAT+TGG | - | chr7_4:56570933-56570952 | Msa1164810:CDS | 30.0% | |
| TGAGAATAAAGAATTGAGGA+GGG | + | chr7_4:56571021-56571040 | None:intergenic | 30.0% | |
| TTGAGAATAAAGAATTGAGG+AGG | + | chr7_4:56571022-56571041 | None:intergenic | 30.0% | |
| AGAGAAATAGTTTCTTCAGT+TGG | - | chr7_4:56571163-56571182 | Msa1164810:CDS | 30.0% | |
| !!! | TTGTTTGAGTTTTGAGATAG+CGG | + | chr7_4:56571220-56571239 | None:intergenic | 30.0% |
| AAAACATACTCAGAGCTAAA+AGG | - | chr7_4:56571254-56571273 | Msa1164810:CDS | 30.0% | |
| !!! | AAGTCTCTTACTTTTTTTGG+AGG | + | chr7_4:56571367-56571386 | None:intergenic | 30.0% |
| GAAGAAGTTGAAGAGAATAA+AGG | + | chr7_4:56571481-56571500 | None:intergenic | 30.0% | |
| ! | TGCTCTATTTCTTGATATGA+CGG | + | chr7_4:56571536-56571555 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | + | chr7_4:56571616-56571635 | None:intergenic | 30.0% | |
| GATTCAATCAGAAACTTATG+TGG | + | chr7_4:56571664-56571683 | None:intergenic | 30.0% | |
| TTATAAACTTATGCGGTGAT+TGG | + | chr7_4:56571726-56571745 | None:intergenic | 30.0% | |
| ! | TGTTACTCTATTTGGTGATT+TGG | + | chr7_4:56571749-56571768 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | + | chr7_4:56571616-56571635 | None:intergenic | 30.0% | |
| GATTCAATAAGAAACTTGTG+TGG | + | chr7_4:56571805-56571824 | None:intergenic | 30.0% | |
| ! | GATTTGGTCATAAACTTATG+CGG | + | chr7_4:56571874-56571893 | None:intergenic | 30.0% |
| !!! | TGATGTTACTTTTGGTGATT+TGG | + | chr7_4:56571890-56571909 | None:intergenic | 30.0% |
| GATTTGATCAGAAACTTATG+TGG | + | chr7_4:56571943-56571962 | None:intergenic | 30.0% | |
| !! | ATGGATTAGTGTGTTTGAAT+AGG | - | chr7_4:56572097-56572116 | Msa1164810:intron | 30.0% |
| ACATATTTCTTGCTCTTCAA+TGG | + | chr7_4:56572249-56572268 | None:intergenic | 30.0% | |
| ! | ATGTTCTTAAATTTTGGACG+GGG | + | chr7_4:56572333-56572352 | None:intergenic | 30.0% |
| CACATAGTAAGTAGTAACCA+TGG | - | chr7_4:56569995-56570014 | Msa1164810:three_prime_UTR | 35.0% | |
| ACATATTACGTTGTCTAGGT+GGG | + | chr7_4:56570031-56570050 | None:intergenic | 35.0% | |
| AACATATTACGTTGTCTAGG+TGG | + | chr7_4:56570032-56570051 | None:intergenic | 35.0% | |
| GCTAACATATTACGTTGTCT+AGG | + | chr7_4:56570035-56570054 | None:intergenic | 35.0% | |
| AGTGTTTGTCTGATAAGAAC+AGG | + | chr7_4:56570068-56570087 | None:intergenic | 35.0% | |
| TATCAGACAAACACTCAACA+AGG | - | chr7_4:56570073-56570092 | Msa1164810:three_prime_UTR | 35.0% | |
| ! | TAAGGGTGTGATTAAGGAAA+AGG | + | chr7_4:56570105-56570124 | None:intergenic | 35.0% |
| ! | ATGGATTAAGGGTGTGATTA+AGG | + | chr7_4:56570111-56570130 | None:intergenic | 35.0% |
| ACAAGAACTACAATTCACTG+TGG | - | chr7_4:56570203-56570222 | Msa1164810:CDS | 35.0% | |
| !! | ACTTGTTCTGAGATAAGTTC+TGG | + | chr7_4:56570277-56570296 | None:intergenic | 35.0% |
| GATGCAAGCAAGAATCTATT+AGG | - | chr7_4:56570301-56570320 | Msa1164810:CDS | 35.0% | |
| ! | CCTCCTAAATTAACTGGTTT+GGG | + | chr7_4:56570662-56570681 | None:intergenic | 35.0% |
| ACCTCCTAAATTAACTGGTT+TGG | + | chr7_4:56570663-56570682 | None:intergenic | 35.0% | |
| ACCAGTTAATTTAGGAGGTA+CGG | - | chr7_4:56570664-56570683 | Msa1164810:CDS | 35.0% | |
| ! | CTGGAACTTAGAATTGACTT+TGG | + | chr7_4:56570718-56570737 | None:intergenic | 35.0% |
| AGTTCCAGCACTTAAAATTG+TGG | - | chr7_4:56570730-56570749 | Msa1164810:CDS | 35.0% | |
| !! | AACACCACAATTTTAAGTGC+TGG | + | chr7_4:56570737-56570756 | None:intergenic | 35.0% |
| AATCTTGATTGCACGAGATA+AGG | + | chr7_4:56570850-56570869 | None:intergenic | 35.0% | |
| AATATGGTGAGAAAAAGGTC+CGG | + | chr7_4:56570879-56570898 | None:intergenic | 35.0% | |
| GTAGCAATATGGTGAGAAAA+AGG | + | chr7_4:56570884-56570903 | None:intergenic | 35.0% | |
| CTTAGTGACAAGTAGCAATA+TGG | + | chr7_4:56570895-56570914 | None:intergenic | 35.0% | |
| GCCAATCGTTTCAATGTAAT+TGG | + | chr7_4:56570937-56570956 | None:intergenic | 35.0% | |
| !! | TTTGAGATAGCGGTGTTTTT+GGG | + | chr7_4:56571210-56571229 | None:intergenic | 35.0% |
| !!! | TTTTGAGATAGCGGTGTTTT+TGG | + | chr7_4:56571211-56571230 | None:intergenic | 35.0% |
| !!! | TAGCTCTGAGTATGTTTTCA+GGG | + | chr7_4:56571252-56571271 | None:intergenic | 35.0% |
| !!! | TTAGCTCTGAGTATGTTTTC+AGG | + | chr7_4:56571253-56571272 | None:intergenic | 35.0% |
| GTTGAAGAGAATAAAGGGTT+GGG | + | chr7_4:56571475-56571494 | None:intergenic | 35.0% | |
| AGTTGAAGAGAATAAAGGGT+TGG | + | chr7_4:56571476-56571495 | None:intergenic | 35.0% | |
| ! | GCTCTATTTCTTGATATGAC+GGG | + | chr7_4:56571535-56571554 | None:intergenic | 35.0% |
| GATTTGATCCTAAACTTGTG+TGG | + | chr7_4:56571568-56571587 | None:intergenic | 35.0% | |
| GTTTCGATCAGAAACTTATG+AGG | + | chr7_4:56571592-56571611 | None:intergenic | 35.0% | |
| TCAGAAACTTATGTGGTGAT+TGG | + | chr7_4:56571657-56571676 | None:intergenic | 35.0% | |
| TAAGAAACTTGTGTGGTGAT+TGG | + | chr7_4:56571798-56571817 | None:intergenic | 35.0% | |
| ! | TGTGTTGTTGCTACTCTATT+TGG | + | chr7_4:56571829-56571848 | None:intergenic | 35.0% |
| TCATAAACTTATGCGGTGAT+TGG | + | chr7_4:56571867-56571886 | None:intergenic | 35.0% | |
| !!! | GGTGTTGTTGATGTTACTTT+TGG | + | chr7_4:56571898-56571917 | None:intergenic | 35.0% |
| TTCAATCTTGTAGGTCTCTT+GGG | + | chr7_4:56571976-56571995 | None:intergenic | 35.0% | |
| TTTGGAGAGTTCAATCTTGT+AGG | + | chr7_4:56571985-56572004 | None:intergenic | 35.0% | |
| ! | AGAAGTGTACAGAAAAGTGA+TGG | - | chr7_4:56572078-56572097 | Msa1164810:intron | 35.0% |
| !! | AAAGTTGATGGCTTTGTTAG+TGG | - | chr7_4:56572273-56572292 | Msa1164810:intron | 35.0% |
| CATATTACGTTGTCTAGGTG+GGG | + | chr7_4:56570030-56570049 | None:intergenic | 40.0% | |
| GAGAATGCGTTGAAAGCAAA+AGG | + | chr7_4:56570336-56570355 | None:intergenic | 40.0% | |
| ATTGTCTTTACCCTCTCAGA+GGG | - | chr7_4:56570356-56570375 | Msa1164810:CDS | 40.0% | |
| ! | TTAAATAACGCCCTCTGAGA+GGG | + | chr7_4:56570369-56570388 | None:intergenic | 40.0% |
| ATTAAATAACGCCCTCTGAG+AGG | + | chr7_4:56570370-56570389 | None:intergenic | 40.0% | |
| ! | TAATCTAGAGTTCCGTCGAA+AGG | - | chr7_4:56570386-56570405 | Msa1164810:CDS | 40.0% |
| TGGGCATCAATTAAGAACGA+AGG | + | chr7_4:56570418-56570437 | None:intergenic | 40.0% | |
| CCCAAACCAGTTAATTTAGG+AGG | - | chr7_4:56570659-56570678 | Msa1164810:CDS | 40.0% | |
| ACCGTACCTCCTAAATTAAC+TGG | + | chr7_4:56570668-56570687 | None:intergenic | 40.0% | |
| ATCTCGTGCAATCAAGATTG+CGG | - | chr7_4:56570851-56570870 | Msa1164810:CDS | 40.0% | |
| ACTCAGAGCTAAAAGGAGAA+AGG | - | chr7_4:56571261-56571280 | Msa1164810:CDS | 40.0% | |
| !! | ACTTGTTGAGATGGTAATGG+TGG | + | chr7_4:56571316-56571335 | None:intergenic | 40.0% |
| ! | AGAGACCTTGAAGTTGATTC+TGG | + | chr7_4:56571344-56571363 | None:intergenic | 40.0% |
| ! | TAGCAAATAGGGTATCTCCT+AGG | - | chr7_4:56571416-56571435 | Msa1164810:intron | 40.0% |
| ! | ATAGGGTATCTCCTAGGAAT+AGG | - | chr7_4:56571422-56571441 | Msa1164810:intron | 40.0% |
| CAACAACACCACACAAGTTT+CGG | - | chr7_4:56571629-56571648 | Msa1164810:intron | 40.0% | |
| TGCGTTGTTGCTACTCTATT+TGG | + | chr7_4:56571688-56571707 | None:intergenic | 40.0% | |
| CAACAACGCAACACAAGTTT+CGG | - | chr7_4:56571698-56571717 | Msa1164810:intron | 40.0% | |
| CAACAACACCACACAAGTTT+CGG | - | chr7_4:56571629-56571648 | Msa1164810:intron | 40.0% | |
| CAACAACACAACCCAAGTTT+CGG | - | chr7_4:56571839-56571858 | Msa1164810:intron | 40.0% | |
| CAACAACACCACAAAAGTCT+CGG | - | chr7_4:56571908-56571927 | Msa1164810:intron | 40.0% | |
| ! | GATTCAATCCGAGACTTTTG+TGG | + | chr7_4:56571919-56571938 | None:intergenic | 40.0% |
| GTTCAATCTTGTAGGTCTCT+TGG | + | chr7_4:56571977-56571996 | None:intergenic | 40.0% | |
| ACCTTTGTCTCCTTCTAGAT+TGG | - | chr7_4:56572035-56572054 | Msa1164810:intron | 40.0% | |
| ACACTTCTCTTGCTCTTTGT+TGG | + | chr7_4:56572066-56572085 | None:intergenic | 40.0% | |
| !! | CCATCACTTTTCTTGCTCTT+TGG | + | chr7_4:56572129-56572148 | None:intergenic | 40.0% |
| CCAAAGAGCAAGAAAAGTGA+TGG | - | chr7_4:56572126-56572145 | Msa1164810:intron | 40.0% | |
| !! | GAGCAAGAAAAGTGATGGAT+TGG | - | chr7_4:56572131-56572150 | Msa1164810:intron | 40.0% |
| CAAGAGTTCTCCAAAGAGAT+TGG | - | chr7_4:56572164-56572183 | Msa1164810:CDS | 40.0% | |
| TTTGATGCAGCCAATCTCTT+TGG | + | chr7_4:56572177-56572196 | None:intergenic | 40.0% | |
| CTTACTATGTGTGATCCACG+CGG | + | chr7_4:56569986-56570005 | None:intergenic | 45.0% | |
| TTTGAAGGTGGATCAGTGCA+TGG | - | chr7_4:56570173-56570192 | Msa1164810:CDS | 45.0% | |
| GAACTACAATTCACTGTGGC+AGG | - | chr7_4:56570207-56570226 | Msa1164810:CDS | 45.0% | |
| !! | AGATAAGTTCTGGTGCTACG+AGG | + | chr7_4:56570267-56570286 | None:intergenic | 45.0% |
| CATTGTCTTTACCCTCTCAG+AGG | - | chr7_4:56570355-56570374 | Msa1164810:CDS | 45.0% | |
| CGAAGGAACAATCCTTTCGA+CGG | + | chr7_4:56570401-56570420 | None:intergenic | 45.0% | |
| CCAAATTAGCCCACCGAAAT+TGG | + | chr7_4:56570450-56570469 | None:intergenic | 45.0% | |
| !! | CCAATTTCGGTGGGCTAATT+TGG | - | chr7_4:56570447-56570466 | Msa1164810:CDS | 45.0% |
| ! | TGGGCTAATTTGGCTTCTTC+AGG | - | chr7_4:56570457-56570476 | Msa1164810:CDS | 45.0% |
| TGCACAAAAAACATCTCCGC+TGG | - | chr7_4:56570628-56570647 | Msa1164810:CDS | 45.0% | |
| GCACAAAAAACATCTCCGCT+GGG | - | chr7_4:56570629-56570648 | Msa1164810:CDS | 45.0% | |
| CACAAAAAACATCTCCGCTG+GGG | - | chr7_4:56570630-56570649 | Msa1164810:CDS | 45.0% | |
| TGTGTTTGATGCAGCCTCAA+TGG | - | chr7_4:56570793-56570812 | Msa1164810:CDS | 45.0% | |
| CGATTGGCATTCGTGAGTTT+CGG | - | chr7_4:56570949-56570968 | Msa1164810:CDS | 45.0% | |
| GATTGGCATTCGTGAGTTTC+GGG | - | chr7_4:56570950-56570969 | Msa1164810:CDS | 45.0% | |
| GTAACTTTGATGCAGCTGAG+TGG | - | chr7_4:56571068-56571087 | Msa1164810:CDS | 45.0% | |
| TCATTGCCTGCAATGCTTGT+AGG | - | chr7_4:56571100-56571119 | Msa1164810:CDS | 45.0% | |
| ! | GTTTCACCTACAAGCATTGC+AGG | + | chr7_4:56571109-56571128 | None:intergenic | 45.0% |
| TGGTACAAAATTTGCCACCG+AGG | - | chr7_4:56571183-56571202 | Msa1164810:CDS | 45.0% | |
| ! | CGCACTTGTTGAGATGGTAA+TGG | + | chr7_4:56571319-56571338 | None:intergenic | 45.0% |
| GCGTTCCAGAATCAACTTCA+AGG | - | chr7_4:56571336-56571355 | Msa1164810:CDS | 45.0% | |
| TATCTCCTAGGAATAGGCCA+TGG | - | chr7_4:56571428-56571447 | Msa1164810:intron | 45.0% | |
| ATCTCCTAGGAATAGGCCAT+GGG | - | chr7_4:56571429-56571448 | Msa1164810:intron | 45.0% | |
| ! | AGTACTGTCTTTCTAGCCCA+TGG | + | chr7_4:56571448-56571467 | None:intergenic | 45.0% |
| CAACAACGCCACACAAGTTT+AGG | - | chr7_4:56571557-56571576 | Msa1164810:intron | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | + | chr7_4:56571640-56571659 | None:intergenic | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | + | chr7_4:56571640-56571659 | None:intergenic | 45.0% | |
| GGTGATTGGATCCGAAACTT+GGG | + | chr7_4:56571643-56571662 | None:intergenic | 45.0% | |
| GATGCAGCACGATATCTCTT+TGG | + | chr7_4:56572003-56572022 | None:intergenic | 45.0% | |
| GCCAATCTAGAAGGAGACAA+AGG | + | chr7_4:56572039-56572058 | None:intergenic | 45.0% | |
| ATCTTTCTCTCCTTCGAGAC+TGG | - | chr7_4:56572206-56572225 | Msa1164810:CDS | 45.0% | |
| GGCAATTGTACTGTTGTAGC+TGG | + | chr7_4:56572312-56572331 | None:intergenic | 45.0% | |
| ! | ACGTTGTCTAGGTGGGGTTT+TGG | + | chr7_4:56570024-56570043 | None:intergenic | 50.0% |
| AGGTGGATCAGTGCATGGAT+CGG | - | chr7_4:56570178-56570197 | Msa1164810:CDS | 50.0% | |
| CTACAATTCACTGTGGCAGG+TGG | - | chr7_4:56570210-56570229 | Msa1164810:CDS | 50.0% | |
| ! | GGTGGAACAAAGCTGGTTTC+TGG | - | chr7_4:56570228-56570247 | Msa1164810:CDS | 50.0% |
| CCGAAATTGGCATCTGGGTT+GGG | + | chr7_4:56570437-56570456 | None:intergenic | 50.0% | |
| CCCAACCCAGATGCCAATTT+CGG | - | chr7_4:56570434-56570453 | Msa1164810:CDS | 50.0% | |
| ACCGAAATTGGCATCTGGGT+TGG | + | chr7_4:56570438-56570457 | None:intergenic | 50.0% | |
| AACCCAGATGCCAATTTCGG+TGG | - | chr7_4:56570437-56570456 | Msa1164810:CDS | 50.0% | |
| ACCCAGATGCCAATTTCGGT+GGG | - | chr7_4:56570438-56570457 | Msa1164810:CDS | 50.0% | |
| GAGACAGAGAGAGCAAGCAA+AGG | + | chr7_4:56570692-56570711 | None:intergenic | 50.0% | |
| CCACAACGTTACTGCCATTG+AGG | + | chr7_4:56570810-56570829 | None:intergenic | 50.0% | |
| CCTCAATGGCAGTAACGTTG+TGG | - | chr7_4:56570807-56570826 | Msa1164810:CDS | 50.0% | |
| TGCAATCAAGATTGCGGCAC+CGG | - | chr7_4:56570857-56570876 | Msa1164810:CDS | 50.0% | |
| !!! | TAGCGGTGTTTTTGGGTCCT+CGG | + | chr7_4:56571203-56571222 | None:intergenic | 50.0% |
| ! | CTGGAACGCACTTGTTGAGA+TGG | + | chr7_4:56571325-56571344 | None:intergenic | 50.0% |
| CGGTGATTGGATCCGAAACT+TGG | + | chr7_4:56571713-56571732 | None:intergenic | 50.0% | |
| CTTGTAGGTCTCTTGGGTGA+AGG | + | chr7_4:56571970-56571989 | None:intergenic | 50.0% | |
| GTTGGTGCAGCCAATCTAGA+AGG | + | chr7_4:56572048-56572067 | None:intergenic | 50.0% | |
| CTCCTTCGAGACTGGTAACA+AGG | - | chr7_4:56572214-56572233 | Msa1164810:CDS | 50.0% | |
| !! | AGCCTTGTTACCAGTCTCGA+AGG | + | chr7_4:56572219-56572238 | None:intergenic | 50.0% |
| ACGTTACGTTAGGATCCGCG+TGG | - | chr7_4:56569968-56569987 | Msa1164810:three_prime_UTR | 55.0% | |
| !! | AGGTGGGGTTTTGGCAACCA+TGG | + | chr7_4:56570015-56570034 | None:intergenic | 55.0% |
| TGTGGCAGGTGGAACAAAGC+TGG | - | chr7_4:56570221-56570240 | Msa1164810:CDS | 55.0% | |
| GCCCACCGAAATTGGCATCT+GGG | + | chr7_4:56570442-56570461 | None:intergenic | 55.0% | |
| AGCCCACCGAAATTGGCATC+TGG | + | chr7_4:56570443-56570462 | None:intergenic | 55.0% | |
| GGTTTGGGAAACTTCCCCAG+CGG | + | chr7_4:56570647-56570666 | None:intergenic | 55.0% | |
| CTAGCCCATGGCCTATTCCT+AGG | + | chr7_4:56571436-56571455 | None:intergenic | 55.0% | |
| GTAGGTCTCTTGGGTGAAGG+TGG | + | chr7_4:56571967-56571986 | None:intergenic | 55.0% | |
| !!! | CGGTGTTTTTGGGTCCTCGG+TGG | + | chr7_4:56571200-56571219 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56569964 | 56572504 | 56569964 | ID=Msa1164810;Name=Msa1164810 |
| chr7_4 | mRNA | 56569964 | 56572504 | 56569964 | ID=Msa1164810-mRNA-1;Parent=Msa1164810;Name=Msa1164810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|1|1|4|145|521 |
| chr7_4 | exon | 56569964 | 56571385 | 56569964 | ID=Msa1164810-mRNA-1:exon:16900;Parent=Msa1164810-mRNA-1 |
| chr7_4 | exon | 56571788 | 56571852 | 56571788 | ID=Msa1164810-mRNA-1:exon:16899;Parent=Msa1164810-mRNA-1 |
| chr7_4 | exon | 56572146 | 56572288 | 56572146 | ID=Msa1164810-mRNA-1:exon:16898;Parent=Msa1164810-mRNA-1 |
| chr7_4 | exon | 56572374 | 56572504 | 56572374 | ID=Msa1164810-mRNA-1:exon:16897;Parent=Msa1164810-mRNA-1 |
| chr7_4 | five_prime_UTR | 56572455 | 56572504 | 56572455 | ID=Msa1164810-mRNA-1:five_prime_utr;Parent=Msa1164810-mRNA-1 |
| chr7_4 | CDS | 56572374 | 56572454 | 56572374 | ID=Msa1164810-mRNA-1:cds;Parent=Msa1164810-mRNA-1 |
| chr7_4 | CDS | 56572146 | 56572288 | 56572146 | ID=Msa1164810-mRNA-1:cds;Parent=Msa1164810-mRNA-1 |
| chr7_4 | CDS | 56571788 | 56571852 | 56571788 | ID=Msa1164810-mRNA-1:cds;Parent=Msa1164810-mRNA-1 |
| chr7_4 | CDS | 56570109 | 56571385 | 56570109 | ID=Msa1164810-mRNA-1:cds;Parent=Msa1164810-mRNA-1 |
| chr7_4 | three_prime_UTR | 56569964 | 56570108 | 56569964 | ID=Msa1164810-mRNA-1:three_prime_utr;Parent=Msa1164810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
