Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083640 | PNY09408.1 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083640 | sp|Q197W8|TANA_ARATH | 43.011 | 465 | 219 | 20 | 1 | 435 | 1 | 449 | 2.63e-92 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083640 | A0A2K3P284 | 75.413 | 545 | 85 | 11 | 1 | 521 | 1 | 520 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1083640 | Msa1128630 | 0.892827 | 1.108562e-74 | -8.615850e-47 |
| Msa1083640 | Msa1164810 | 0.993790 | 3.067391e-202 | -8.615850e-47 |
| Msa1083640 | Msa1381320 | 0.873513 | 1.387667e-67 | -8.615850e-47 |
| Msa1083640 | Msa1431530 | 0.990183 | 1.941723e-181 | -8.615850e-47 |
| Msa0519820 | Msa1083640 | 0.801801 | 7.583809e-49 | -8.615850e-47 |
| Msa0519830 | Msa1083640 | 0.804302 | 2.306173e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083640 | MtrunA17_Chr7g0272861 | 71.106 | 443 | 87 | 7 | 1 | 438 | 1 | 407 | 0.0 | 569 |
| Msa1083640 | MtrunA17_Chr7g0272861 | 83.425 | 181 | 29 | 1 | 342 | 521 | 249 | 429 | 4.44e-87 | 275 |
| Msa1083640 | MtrunA17_Chr1g0191861 | 74.603 | 63 | 16 | 0 | 28 | 90 | 9 | 71 | 1.56e-26 | 102 |
| Msa1083640 | MtrunA17_Chr1g0191871 | 68.182 | 66 | 19 | 2 | 102 | 165 | 1 | 66 | 2.11e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083640 | AT3G05330.1 | 42.702 | 459 | 217 | 20 | 1 | 429 | 1 | 443 | 4.96e-91 | 286 |
Find 104 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATATGTTCTTAAATTT+TGG | 0.039887 | 7_2:+83974857 | None:intergenic |
| TTTGACCATATTAATATATT+TGG | 0.147711 | 7_2:-83974720 | Msa1083640:three_prime_UTR |
| TTTCCCAAACCAGTTAATTT+AGG | 0.199173 | 7_2:-83976537 | Msa1083640:CDS |
| AAAACAAGTATTTAGCAAAT+AGG | 0.240085 | 7_2:-83975789 | Msa1083640:CDS |
| TGTGTTGTTGCTACTCTATT+TGG | 0.253333 | 7_2:+83975367 | None:intergenic |
| GGTGGAACAAAGCTGGTTTC+TGG | 0.263887 | 7_2:-83976965 | Msa1083640:CDS |
| GTTGTTGATGTTACTCTATT+TGG | 0.265736 | 7_2:+83975580 | None:intergenic |
| GTTGTTGATGTTACTCTATT+TGG | 0.275395 | 7_2:+83975439 | None:intergenic |
| ACCTCCTAAATTAACTGGTT+TGG | 0.288483 | 7_2:+83976533 | None:intergenic |
| AGAGACCTTGAAGTTGATTC+TGG | 0.292172 | 7_2:+83975852 | None:intergenic |
| CCTCCTAAATTAACTGGTTT+GGG | 0.296949 | 7_2:+83976534 | None:intergenic |
| TGTTACTCTATTTGGTGATT+TGG | 0.305045 | 7_2:+83975447 | None:intergenic |
| TTTGATGCAGCCAATCTCTT+TGG | 0.305480 | 7_2:+83975019 | None:intergenic |
| TGCGTTGTTGCTACTCTATT+TGG | 0.307896 | 7_2:+83975508 | None:intergenic |
| ACCTTTGTCTCCTTCTAGAT+TGG | 0.315687 | 7_2:-83975158 | Msa1083640:CDS |
| GAAGAAGTTGAAGAGAATAA+AGG | 0.317119 | 7_2:+83975715 | None:intergenic |
| CAACAACGCCACACAAGTTT+AGG | 0.321234 | 7_2:-83975636 | Msa1083640:CDS |
| GATGCAAGCAAGAATCTATT+AGG | 0.332220 | 7_2:-83976892 | Msa1083640:intron |
| TTCATTGTATTTATTTCATA+AGG | 0.339782 | 7_2:-83974822 | Msa1083640:three_prime_UTR |
| AAAACATACTCAGAGCTAAA+AGG | 0.339987 | 7_2:-83975939 | Msa1083640:CDS |
| ACACTTCTCTTGCTCTTTGT+TGG | 0.348806 | 7_2:+83975130 | None:intergenic |
| ACCGTACCTCCTAAATTAAC+TGG | 0.361045 | 7_2:+83976528 | None:intergenic |
| TTTGGAGAGTTCAATCTTGT+AGG | 0.363209 | 7_2:+83975211 | None:intergenic |
| AAACAAGTATTTAGCAAATA+GGG | 0.363248 | 7_2:-83975788 | Msa1083640:CDS |
| GTTCAATCTTGTAGGTCTCT+TGG | 0.368805 | 7_2:+83975219 | None:intergenic |
| ACGTTGTCTAGGTGGGGTTT+TGG | 0.369866 | 7_2:+83977172 | None:intergenic |
| GATGCAGCACGATATCTCTT+TGG | 0.376546 | 7_2:+83975193 | None:intergenic |
| AAAGTTGATGGCTTTGTTAG+TGG | 0.379685 | 7_2:-83974920 | Msa1083640:CDS |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | 7_2:-83975423 | Msa1083640:CDS |
| CAACAACACCACACAAGTTT+CGG | 0.386498 | 7_2:-83975564 | Msa1083640:CDS |
| TTATAAACTTATGCGGTGAT+TGG | 0.387389 | 7_2:+83975470 | None:intergenic |
| GGTGTTGTTGATGTTACTTT+TGG | 0.392704 | 7_2:+83975298 | None:intergenic |
| ACTTGTTCTGAGATAAGTTC+TGG | 0.395882 | 7_2:+83976919 | None:intergenic |
| TCATAAACTTATGCGGTGAT+TGG | 0.398357 | 7_2:+83975329 | None:intergenic |
| ACATATTTCTTGCTCTTCAA+TGG | 0.405712 | 7_2:+83974947 | None:intergenic |
| TTCAATCTTGTAGGTCTCTT+GGG | 0.406930 | 7_2:+83975220 | None:intergenic |
| CGGTGATTGGATCCGAAACT+TGG | 0.411229 | 7_2:+83975342 | None:intergenic |
| AAATTCCAAATATATTAATA+TGG | 0.414532 | 7_2:+83974715 | None:intergenic |
| GTTTCACCTACAAGCATTGC+AGG | 0.415594 | 7_2:+83976087 | None:intergenic |
| AAGAAGTTGAAGAGAATAAA+GGG | 0.417357 | 7_2:+83975716 | None:intergenic |
| GTTGGTGCAGCCAATCTAGA+AGG | 0.417865 | 7_2:+83975148 | None:intergenic |
| AGTGTTTGTCTGATAAGAAC+AGG | 0.423320 | 7_2:+83977128 | None:intergenic |
| TCAGAAACTTATGTGGTGAT+TGG | 0.427597 | 7_2:+83975539 | None:intergenic |
| CAACAACGCAACACAAGTTT+CGG | 0.429480 | 7_2:-83975495 | Msa1083640:CDS |
| ATGGATTAGTGTGTTTGAAT+AGG | 0.436639 | 7_2:-83975096 | Msa1083640:CDS |
| CTAGCCCATGGCCTATTCCT+AGG | 0.437592 | 7_2:+83975760 | None:intergenic |
| ATCTTTCTCTCCTTCGAGAC+TGG | 0.438651 | 7_2:-83974987 | Msa1083640:CDS |
| ATAGGGTATCTCCTAGGAAT+AGG | 0.439133 | 7_2:-83975771 | Msa1083640:CDS |
| CAACAACACAACCCAAGTTT+CGG | 0.439758 | 7_2:-83975354 | Msa1083640:CDS |
| TCATTGCCTGCAATGCTTGT+AGG | 0.449054 | 7_2:-83976093 | Msa1083640:CDS |
| GCGTTCCAGAATCAACTTCA+AGG | 0.450480 | 7_2:-83975857 | Msa1083640:CDS |
| AGAGAAATAGTTTCTTCAGT+TGG | 0.467736 | 7_2:-83976030 | Msa1083640:CDS |
| TGCTCTATTTCTTGATATGA+CGG | 0.468194 | 7_2:+83975660 | None:intergenic |
| CAAGAGTTCTCCAAAGAGAT+TGG | 0.474726 | 7_2:-83975029 | Msa1083640:CDS |
| TAAGAAACTTGTGTGGTGAT+TGG | 0.482000 | 7_2:+83975398 | None:intergenic |
| GAGCAAGAAAAGTGATGGAT+TGG | 0.487892 | 7_2:-83975062 | Msa1083640:CDS |
| AGTTGAAGAGAATAAAGGGT+TGG | 0.502494 | 7_2:+83975720 | None:intergenic |
| GTTGAAGAGAATAAAGGGTT+GGG | 0.506043 | 7_2:+83975721 | None:intergenic |
| CCCAAACCAGTTAATTTAGG+AGG | 0.507986 | 7_2:-83976534 | Msa1083640:intron |
| GAACTACAATTCACTGTGGC+AGG | 0.508994 | 7_2:-83976986 | Msa1083640:CDS |
| GCTCTATTTCTTGATATGAC+GGG | 0.513767 | 7_2:+83975661 | None:intergenic |
| ACATATTACGTTGTCTAGGT+GGG | 0.516327 | 7_2:+83977165 | None:intergenic |
| GGCAATTGTACTGTTGTAGC+TGG | 0.517437 | 7_2:+83974884 | None:intergenic |
| CATATTACGTTGTCTAGGTG+GGG | 0.533124 | 7_2:+83977166 | None:intergenic |
| CTCCTTCGAGACTGGTAACA+AGG | 0.534952 | 7_2:-83974979 | Msa1083640:CDS |
| CTGGAACGCACTTGTTGAGA+TGG | 0.535724 | 7_2:+83975871 | None:intergenic |
| CCAAAGAGCAAGAAAAGTGA+TGG | 0.536346 | 7_2:-83975067 | Msa1083640:CDS |
| GTTTCGATCAGAAACTTATG+AGG | 0.538941 | 7_2:+83975604 | None:intergenic |
| TTTGAAGGTGGATCAGTGCA+TGG | 0.541390 | 7_2:-83977020 | Msa1083640:intron |
| ACTCAGAGCTAAAAGGAGAA+AGG | 0.547146 | 7_2:-83975932 | Msa1083640:CDS |
| TGTGGCAGGTGGAACAAAGC+TGG | 0.548780 | 7_2:-83976972 | Msa1083640:CDS |
| TATCTCCTAGGAATAGGCCA+TGG | 0.549739 | 7_2:-83975765 | Msa1083640:CDS |
| CTTGTAGGTCTCTTGGGTGA+AGG | 0.550040 | 7_2:+83975226 | None:intergenic |
| GCTAACATATTACGTTGTCT+AGG | 0.559526 | 7_2:+83977161 | None:intergenic |
| AGAAGTGTACAGAAAAGTGA+TGG | 0.573647 | 7_2:-83975115 | Msa1083640:CDS |
| AACATATTACGTTGTCTAGG+TGG | 0.573679 | 7_2:+83977164 | None:intergenic |
| TAGCAAATAGGGTATCTCCT+AGG | 0.574329 | 7_2:-83975777 | Msa1083640:CDS |
| GTAGGTCTCTTGGGTGAAGG+TGG | 0.578281 | 7_2:+83975229 | None:intergenic |
| AGTACTGTCTTTCTAGCCCA+TGG | 0.578757 | 7_2:+83975748 | None:intergenic |
| ATCTCCTAGGAATAGGCCAT+GGG | 0.582839 | 7_2:-83975764 | Msa1083640:CDS |
| CAACAACACCACAAAAGTCT+CGG | 0.586382 | 7_2:-83975285 | Msa1083640:CDS |
| AGCCTTGTTACCAGTCTCGA+AGG | 0.600893 | 7_2:+83974977 | None:intergenic |
| CGCACTTGTTGAGATGGTAA+TGG | 0.601173 | 7_2:+83975877 | None:intergenic |
| GATTTGATCAGAAACTTATG+TGG | 0.606522 | 7_2:+83975253 | None:intergenic |
| CTACAATTCACTGTGGCAGG+TGG | 0.624153 | 7_2:-83976983 | Msa1083640:CDS |
| AGGTGGATCAGTGCATGGAT+CGG | 0.626730 | 7_2:-83977015 | Msa1083640:CDS |
| GGTGATTGGATCCGAAACTT+GGG | 0.626899 | 7_2:+83975343 | None:intergenic |
| GATTCAATCAGAAACTTATG+TGG | 0.637657 | 7_2:+83975532 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | 7_2:+83975415 | None:intergenic |
| GATTGGATCCGAAACTTGTG+TGG | 0.641283 | 7_2:+83975556 | None:intergenic |
| GATTTGGTTATAAACTTATG+CGG | 0.647613 | 7_2:+83975463 | None:intergenic |
| GATTTGATCCTAAACTTGTG+TGG | 0.652691 | 7_2:+83975628 | None:intergenic |
| GCCAATCTAGAAGGAGACAA+AGG | 0.660648 | 7_2:+83975157 | None:intergenic |
| CACATAGTAAGTAGTAACCA+TGG | 0.662199 | 7_2:-83977198 | Msa1083640:exon |
| TATCAGACAAACACTCAACA+AGG | 0.669769 | 7_2:-83977120 | Msa1083640:intron |
| GTAACTTTGATGCAGCTGAG+TGG | 0.671723 | 7_2:-83976125 | Msa1083640:intron |
| GATTTGGTCATAAACTTATG+CGG | 0.690111 | 7_2:+83975322 | None:intergenic |
| AGATAAGTTCTGGTGCTACG+AGG | 0.714981 | 7_2:+83976929 | None:intergenic |
| ACTTGTTGAGATGGTAATGG+TGG | 0.716854 | 7_2:+83975880 | None:intergenic |
| GATTCAATAAGAAACTTGTG+TGG | 0.717680 | 7_2:+83975391 | None:intergenic |
| TGGTACAAAATTTGCCACCG+AGG | 0.726257 | 7_2:-83976010 | Msa1083640:CDS |
| GGTTTGGGAAACTTCCCCAG+CGG | 0.746127 | 7_2:+83976549 | None:intergenic |
| CTTACTATGTGTGATCCACG+CGG | 0.776784 | 7_2:+83977210 | None:intergenic |
| ACAAGAACTACAATTCACTG+TGG | 0.807781 | 7_2:-83976990 | Msa1083640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAAAATGGATTAA+GGG | + | chr7_2:83974869-83974888 | None:intergenic | 10.0% |
| !!! | AATTAAAATAAAATGGATTA+AGG | + | chr7_2:83974870-83974889 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTTTGAAAACT+CGG | + | chr7_2:83975285-83975304 | None:intergenic | 10.0% |
| !! | AAATTCCAAATATATTAATA+TGG | + | chr7_2:83977228-83977247 | None:intergenic | 10.0% |
| !! | TTCAGGTAATTAAAATAAAA+TGG | + | chr7_2:83974877-83974896 | None:intergenic | 15.0% |
| !! | ATAACAATTACATATAATTC+AGG | + | chr7_2:83974894-83974913 | None:intergenic | 15.0% |
| !! | TTCATTGTATTTATTTCATA+AGG | - | chr7_2:83977118-83977137 | Msa1083640:intron | 15.0% |
| !! | TTTGACCATATTAATATATT+TGG | - | chr7_2:83977220-83977239 | Msa1083640:five_prime_UTR | 15.0% |
| !!! | AATTGTTATGATTCTTTTGA+AGG | - | chr7_2:83974905-83974924 | Msa1083640:CDS | 20.0% |
| !! | AAAACAAGTATTTAGCAAAT+AGG | - | chr7_2:83976151-83976170 | Msa1083640:intron | 20.0% |
| !! | AAACAAGTATTTAGCAAATA+GGG | - | chr7_2:83976152-83976171 | Msa1083640:intron | 20.0% |
| !! | AAATATGTACAAAAAGTTGA+TGG | - | chr7_2:83977008-83977027 | Msa1083640:CDS | 20.0% |
| !!! | ATATGTTCTTAAATTTTGGA+CGG | + | chr7_2:83977082-83977101 | None:intergenic | 20.0% |
| !!! | CACAATATGTTCTTAAATTT+TGG | + | chr7_2:83977086-83977105 | None:intergenic | 20.0% |
| ! | ATGTTATGTTGCTAATTTGA+AGG | - | chr7_2:83975341-83975360 | Msa1083640:CDS | 25.0% |
| ! | GAATTGAGAATAAAGAATTG+AGG | + | chr7_2:83975772-83975791 | None:intergenic | 25.0% |
| !! | AACTGTTGTAGAAATTTTAC+AGG | - | chr7_2:83975873-83975892 | Msa1083640:CDS | 25.0% |
| !!! | TCAAAGTCTCTTACTTTTTT+TGG | + | chr7_2:83976117-83976136 | None:intergenic | 25.0% |
| ! | AAGAAGTTGAAGAGAATAAA+GGG | + | chr7_2:83976227-83976246 | None:intergenic | 25.0% |
| !! | GATTTGGTTATAAACTTATG+CGG | + | chr7_2:83976480-83976499 | None:intergenic | 25.0% |
| !! | TATGTTCTTAAATTTTGGAC+GGG | + | chr7_2:83977081-83977100 | None:intergenic | 25.0% |
| !! | TGTTATGATTCTTTTGAAGG+TGG | - | chr7_2:83974908-83974927 | Msa1083640:CDS | 30.0% |
| TTTCCCAAACCAGTTAATTT+AGG | - | chr7_2:83975403-83975422 | Msa1083640:CDS | 30.0% | |
| ACTAAGCTATTATTCACGAT+TGG | - | chr7_2:83975656-83975675 | Msa1083640:CDS | 30.0% | |
| ACCAATTACATTGAAACGAT+TGG | - | chr7_2:83975680-83975699 | Msa1083640:CDS | 30.0% | |
| TGAGAATAAAGAATTGAGGA+GGG | + | chr7_2:83975768-83975787 | None:intergenic | 30.0% | |
| TTGAGAATAAAGAATTGAGG+AGG | + | chr7_2:83975769-83975788 | None:intergenic | 30.0% | |
| AGAGAAATAGTTTCTTCAGT+TGG | - | chr7_2:83975910-83975929 | Msa1083640:CDS | 30.0% | |
| !!! | TTGTTTGAGTTTTGAGATAG+CGG | + | chr7_2:83975967-83975986 | None:intergenic | 30.0% |
| AAAACATACTCAGAGCTAAA+AGG | - | chr7_2:83976001-83976020 | Msa1083640:CDS | 30.0% | |
| !!! | AAGTCTCTTACTTTTTTTGG+AGG | + | chr7_2:83976114-83976133 | None:intergenic | 30.0% |
| GAAGAAGTTGAAGAGAATAA+AGG | + | chr7_2:83976228-83976247 | None:intergenic | 30.0% | |
| ! | TGCTCTATTTCTTGATATGA+CGG | + | chr7_2:83976283-83976302 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | + | chr7_2:83976363-83976382 | None:intergenic | 30.0% | |
| GATTCAATCAGAAACTTATG+TGG | + | chr7_2:83976411-83976430 | None:intergenic | 30.0% | |
| TTATAAACTTATGCGGTGAT+TGG | + | chr7_2:83976473-83976492 | None:intergenic | 30.0% | |
| ! | TGTTACTCTATTTGGTGATT+TGG | + | chr7_2:83976496-83976515 | None:intergenic | 30.0% |
| GTTGTTGATGTTACTCTATT+TGG | + | chr7_2:83976363-83976382 | None:intergenic | 30.0% | |
| GATTCAATAAGAAACTTGTG+TGG | + | chr7_2:83976552-83976571 | None:intergenic | 30.0% | |
| ! | GATTTGGTCATAAACTTATG+CGG | + | chr7_2:83976621-83976640 | None:intergenic | 30.0% |
| !!! | TGATGTTACTTTTGGTGATT+TGG | + | chr7_2:83976637-83976656 | None:intergenic | 30.0% |
| GATTTGATCAGAAACTTATG+TGG | + | chr7_2:83976690-83976709 | None:intergenic | 30.0% | |
| !! | ATGGATTAGTGTGTTTGAAT+AGG | - | chr7_2:83976844-83976863 | Msa1083640:intron | 30.0% |
| ACATATTTCTTGCTCTTCAA+TGG | + | chr7_2:83976996-83977015 | None:intergenic | 30.0% | |
| ! | ATGTTCTTAAATTTTGGACG+GGG | + | chr7_2:83977080-83977099 | None:intergenic | 30.0% |
| CACATAGTAAGTAGTAACCA+TGG | - | chr7_2:83974742-83974761 | Msa1083640:three_prime_UTR | 35.0% | |
| ACATATTACGTTGTCTAGGT+GGG | + | chr7_2:83974778-83974797 | None:intergenic | 35.0% | |
| AACATATTACGTTGTCTAGG+TGG | + | chr7_2:83974779-83974798 | None:intergenic | 35.0% | |
| GCTAACATATTACGTTGTCT+AGG | + | chr7_2:83974782-83974801 | None:intergenic | 35.0% | |
| AGTGTTTGTCTGATAAGAAC+AGG | + | chr7_2:83974815-83974834 | None:intergenic | 35.0% | |
| TATCAGACAAACACTCAACA+AGG | - | chr7_2:83974820-83974839 | Msa1083640:three_prime_UTR | 35.0% | |
| ! | TAAGGGTGTGATTAAGGAAA+AGG | + | chr7_2:83974852-83974871 | None:intergenic | 35.0% |
| ! | ATGGATTAAGGGTGTGATTA+AGG | + | chr7_2:83974858-83974877 | None:intergenic | 35.0% |
| ACAAGAACTACAATTCACTG+TGG | - | chr7_2:83974950-83974969 | Msa1083640:CDS | 35.0% | |
| !! | ACTTGTTCTGAGATAAGTTC+TGG | + | chr7_2:83975024-83975043 | None:intergenic | 35.0% |
| GATGCAAGCAAGAATCTATT+AGG | - | chr7_2:83975048-83975067 | Msa1083640:CDS | 35.0% | |
| ! | CCTCCTAAATTAACTGGTTT+GGG | + | chr7_2:83975409-83975428 | None:intergenic | 35.0% |
| ACCTCCTAAATTAACTGGTT+TGG | + | chr7_2:83975410-83975429 | None:intergenic | 35.0% | |
| ACCAGTTAATTTAGGAGGTA+CGG | - | chr7_2:83975411-83975430 | Msa1083640:CDS | 35.0% | |
| ! | CTGGAACTTAGAATTGACTT+TGG | + | chr7_2:83975465-83975484 | None:intergenic | 35.0% |
| AGTTCCAGCACTTAAAATTG+TGG | - | chr7_2:83975477-83975496 | Msa1083640:CDS | 35.0% | |
| !! | AACACCACAATTTTAAGTGC+TGG | + | chr7_2:83975484-83975503 | None:intergenic | 35.0% |
| AATCTTGATTGCACGAGATA+AGG | + | chr7_2:83975597-83975616 | None:intergenic | 35.0% | |
| AATATGGTGAGAAAAAGGTC+CGG | + | chr7_2:83975626-83975645 | None:intergenic | 35.0% | |
| GTAGCAATATGGTGAGAAAA+AGG | + | chr7_2:83975631-83975650 | None:intergenic | 35.0% | |
| CTTAGTGACAAGTAGCAATA+TGG | + | chr7_2:83975642-83975661 | None:intergenic | 35.0% | |
| GCCAATCGTTTCAATGTAAT+TGG | + | chr7_2:83975684-83975703 | None:intergenic | 35.0% | |
| !! | TTTGAGATAGCGGTGTTTTT+GGG | + | chr7_2:83975957-83975976 | None:intergenic | 35.0% |
| !!! | TTTTGAGATAGCGGTGTTTT+TGG | + | chr7_2:83975958-83975977 | None:intergenic | 35.0% |
| !!! | TAGCTCTGAGTATGTTTTCA+GGG | + | chr7_2:83975999-83976018 | None:intergenic | 35.0% |
| !!! | TTAGCTCTGAGTATGTTTTC+AGG | + | chr7_2:83976000-83976019 | None:intergenic | 35.0% |
| GTTGAAGAGAATAAAGGGTT+GGG | + | chr7_2:83976222-83976241 | None:intergenic | 35.0% | |
| AGTTGAAGAGAATAAAGGGT+TGG | + | chr7_2:83976223-83976242 | None:intergenic | 35.0% | |
| ! | GCTCTATTTCTTGATATGAC+GGG | + | chr7_2:83976282-83976301 | None:intergenic | 35.0% |
| GATTTGATCCTAAACTTGTG+TGG | + | chr7_2:83976315-83976334 | None:intergenic | 35.0% | |
| GTTTCGATCAGAAACTTATG+AGG | + | chr7_2:83976339-83976358 | None:intergenic | 35.0% | |
| TCAGAAACTTATGTGGTGAT+TGG | + | chr7_2:83976404-83976423 | None:intergenic | 35.0% | |
| TAAGAAACTTGTGTGGTGAT+TGG | + | chr7_2:83976545-83976564 | None:intergenic | 35.0% | |
| ! | TGTGTTGTTGCTACTCTATT+TGG | + | chr7_2:83976576-83976595 | None:intergenic | 35.0% |
| TCATAAACTTATGCGGTGAT+TGG | + | chr7_2:83976614-83976633 | None:intergenic | 35.0% | |
| !!! | GGTGTTGTTGATGTTACTTT+TGG | + | chr7_2:83976645-83976664 | None:intergenic | 35.0% |
| TTCAATCTTGTAGGTCTCTT+GGG | + | chr7_2:83976723-83976742 | None:intergenic | 35.0% | |
| TTTGGAGAGTTCAATCTTGT+AGG | + | chr7_2:83976732-83976751 | None:intergenic | 35.0% | |
| ! | AGAAGTGTACAGAAAAGTGA+TGG | - | chr7_2:83976825-83976844 | Msa1083640:intron | 35.0% |
| !! | AAAGTTGATGGCTTTGTTAG+TGG | - | chr7_2:83977020-83977039 | Msa1083640:intron | 35.0% |
| CATATTACGTTGTCTAGGTG+GGG | + | chr7_2:83974777-83974796 | None:intergenic | 40.0% | |
| GAGAATGCGTTGAAAGCAAA+AGG | + | chr7_2:83975083-83975102 | None:intergenic | 40.0% | |
| ATTGTCTTTACCCTCTCAGA+GGG | - | chr7_2:83975103-83975122 | Msa1083640:CDS | 40.0% | |
| ! | TTAAATAACGCCCTCTGAGA+GGG | + | chr7_2:83975116-83975135 | None:intergenic | 40.0% |
| ATTAAATAACGCCCTCTGAG+AGG | + | chr7_2:83975117-83975136 | None:intergenic | 40.0% | |
| ! | TAATCTAGAGTTCCGTCGAA+AGG | - | chr7_2:83975133-83975152 | Msa1083640:CDS | 40.0% |
| TGGGCATCAATTAAGAACGA+AGG | + | chr7_2:83975165-83975184 | None:intergenic | 40.0% | |
| CCCAAACCAGTTAATTTAGG+AGG | - | chr7_2:83975406-83975425 | Msa1083640:CDS | 40.0% | |
| ACCGTACCTCCTAAATTAAC+TGG | + | chr7_2:83975415-83975434 | None:intergenic | 40.0% | |
| ATCTCGTGCAATCAAGATTG+CGG | - | chr7_2:83975598-83975617 | Msa1083640:CDS | 40.0% | |
| ACTCAGAGCTAAAAGGAGAA+AGG | - | chr7_2:83976008-83976027 | Msa1083640:CDS | 40.0% | |
| !! | ACTTGTTGAGATGGTAATGG+TGG | + | chr7_2:83976063-83976082 | None:intergenic | 40.0% |
| ! | AGAGACCTTGAAGTTGATTC+TGG | + | chr7_2:83976091-83976110 | None:intergenic | 40.0% |
| ! | TAGCAAATAGGGTATCTCCT+AGG | - | chr7_2:83976163-83976182 | Msa1083640:intron | 40.0% |
| ! | ATAGGGTATCTCCTAGGAAT+AGG | - | chr7_2:83976169-83976188 | Msa1083640:intron | 40.0% |
| CAACAACACCACACAAGTTT+CGG | - | chr7_2:83976376-83976395 | Msa1083640:intron | 40.0% | |
| TGCGTTGTTGCTACTCTATT+TGG | + | chr7_2:83976435-83976454 | None:intergenic | 40.0% | |
| CAACAACGCAACACAAGTTT+CGG | - | chr7_2:83976445-83976464 | Msa1083640:intron | 40.0% | |
| CAACAACACCACACAAGTTT+CGG | - | chr7_2:83976376-83976395 | Msa1083640:intron | 40.0% | |
| CAACAACACAACCCAAGTTT+CGG | - | chr7_2:83976586-83976605 | Msa1083640:intron | 40.0% | |
| CAACAACACCACAAAAGTCT+CGG | - | chr7_2:83976655-83976674 | Msa1083640:intron | 40.0% | |
| ! | GATTCAATCCGAGACTTTTG+TGG | + | chr7_2:83976666-83976685 | None:intergenic | 40.0% |
| GTTCAATCTTGTAGGTCTCT+TGG | + | chr7_2:83976724-83976743 | None:intergenic | 40.0% | |
| ACCTTTGTCTCCTTCTAGAT+TGG | - | chr7_2:83976782-83976801 | Msa1083640:intron | 40.0% | |
| ACACTTCTCTTGCTCTTTGT+TGG | + | chr7_2:83976813-83976832 | None:intergenic | 40.0% | |
| !! | CCATCACTTTTCTTGCTCTT+TGG | + | chr7_2:83976876-83976895 | None:intergenic | 40.0% |
| CCAAAGAGCAAGAAAAGTGA+TGG | - | chr7_2:83976873-83976892 | Msa1083640:intron | 40.0% | |
| !! | GAGCAAGAAAAGTGATGGAT+TGG | - | chr7_2:83976878-83976897 | Msa1083640:intron | 40.0% |
| CAAGAGTTCTCCAAAGAGAT+TGG | - | chr7_2:83976911-83976930 | Msa1083640:CDS | 40.0% | |
| TTTGATGCAGCCAATCTCTT+TGG | + | chr7_2:83976924-83976943 | None:intergenic | 40.0% | |
| CTTACTATGTGTGATCCACG+CGG | + | chr7_2:83974733-83974752 | None:intergenic | 45.0% | |
| TTTGAAGGTGGATCAGTGCA+TGG | - | chr7_2:83974920-83974939 | Msa1083640:CDS | 45.0% | |
| GAACTACAATTCACTGTGGC+AGG | - | chr7_2:83974954-83974973 | Msa1083640:CDS | 45.0% | |
| !! | AGATAAGTTCTGGTGCTACG+AGG | + | chr7_2:83975014-83975033 | None:intergenic | 45.0% |
| CATTGTCTTTACCCTCTCAG+AGG | - | chr7_2:83975102-83975121 | Msa1083640:CDS | 45.0% | |
| CGAAGGAACAATCCTTTCGA+CGG | + | chr7_2:83975148-83975167 | None:intergenic | 45.0% | |
| CCAAATTAGCCCACCGAAAT+TGG | + | chr7_2:83975197-83975216 | None:intergenic | 45.0% | |
| !! | CCAATTTCGGTGGGCTAATT+TGG | - | chr7_2:83975194-83975213 | Msa1083640:CDS | 45.0% |
| ! | TGGGCTAATTTGGCTTCTTC+AGG | - | chr7_2:83975204-83975223 | Msa1083640:CDS | 45.0% |
| TGCACAAAAAACATCTCCGC+TGG | - | chr7_2:83975375-83975394 | Msa1083640:CDS | 45.0% | |
| GCACAAAAAACATCTCCGCT+GGG | - | chr7_2:83975376-83975395 | Msa1083640:CDS | 45.0% | |
| CACAAAAAACATCTCCGCTG+GGG | - | chr7_2:83975377-83975396 | Msa1083640:CDS | 45.0% | |
| TGTGTTTGATGCAGCCTCAA+TGG | - | chr7_2:83975540-83975559 | Msa1083640:CDS | 45.0% | |
| CGATTGGCATTCGTGAGTTT+CGG | - | chr7_2:83975696-83975715 | Msa1083640:CDS | 45.0% | |
| GATTGGCATTCGTGAGTTTC+GGG | - | chr7_2:83975697-83975716 | Msa1083640:CDS | 45.0% | |
| GTAACTTTGATGCAGCTGAG+TGG | - | chr7_2:83975815-83975834 | Msa1083640:CDS | 45.0% | |
| TCATTGCCTGCAATGCTTGT+AGG | - | chr7_2:83975847-83975866 | Msa1083640:CDS | 45.0% | |
| ! | GTTTCACCTACAAGCATTGC+AGG | + | chr7_2:83975856-83975875 | None:intergenic | 45.0% |
| TGGTACAAAATTTGCCACCG+AGG | - | chr7_2:83975930-83975949 | Msa1083640:CDS | 45.0% | |
| ! | CGCACTTGTTGAGATGGTAA+TGG | + | chr7_2:83976066-83976085 | None:intergenic | 45.0% |
| GCGTTCCAGAATCAACTTCA+AGG | - | chr7_2:83976083-83976102 | Msa1083640:CDS | 45.0% | |
| TATCTCCTAGGAATAGGCCA+TGG | - | chr7_2:83976175-83976194 | Msa1083640:intron | 45.0% | |
| ATCTCCTAGGAATAGGCCAT+GGG | - | chr7_2:83976176-83976195 | Msa1083640:intron | 45.0% | |
| ! | AGTACTGTCTTTCTAGCCCA+TGG | + | chr7_2:83976195-83976214 | None:intergenic | 45.0% |
| CAACAACGCCACACAAGTTT+AGG | - | chr7_2:83976304-83976323 | Msa1083640:intron | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | + | chr7_2:83976387-83976406 | None:intergenic | 45.0% | |
| GATTGGATCCGAAACTTGTG+TGG | + | chr7_2:83976387-83976406 | None:intergenic | 45.0% | |
| GGTGATTGGATCCGAAACTT+GGG | + | chr7_2:83976390-83976409 | None:intergenic | 45.0% | |
| GATGCAGCACGATATCTCTT+TGG | + | chr7_2:83976750-83976769 | None:intergenic | 45.0% | |
| GCCAATCTAGAAGGAGACAA+AGG | + | chr7_2:83976786-83976805 | None:intergenic | 45.0% | |
| ATCTTTCTCTCCTTCGAGAC+TGG | - | chr7_2:83976953-83976972 | Msa1083640:CDS | 45.0% | |
| GGCAATTGTACTGTTGTAGC+TGG | + | chr7_2:83977059-83977078 | None:intergenic | 45.0% | |
| ! | ACGTTGTCTAGGTGGGGTTT+TGG | + | chr7_2:83974771-83974790 | None:intergenic | 50.0% |
| AGGTGGATCAGTGCATGGAT+CGG | - | chr7_2:83974925-83974944 | Msa1083640:CDS | 50.0% | |
| CTACAATTCACTGTGGCAGG+TGG | - | chr7_2:83974957-83974976 | Msa1083640:CDS | 50.0% | |
| ! | GGTGGAACAAAGCTGGTTTC+TGG | - | chr7_2:83974975-83974994 | Msa1083640:CDS | 50.0% |
| CCGAAATTGGCATCTGGGTT+GGG | + | chr7_2:83975184-83975203 | None:intergenic | 50.0% | |
| CCCAACCCAGATGCCAATTT+CGG | - | chr7_2:83975181-83975200 | Msa1083640:CDS | 50.0% | |
| ACCGAAATTGGCATCTGGGT+TGG | + | chr7_2:83975185-83975204 | None:intergenic | 50.0% | |
| AACCCAGATGCCAATTTCGG+TGG | - | chr7_2:83975184-83975203 | Msa1083640:CDS | 50.0% | |
| ACCCAGATGCCAATTTCGGT+GGG | - | chr7_2:83975185-83975204 | Msa1083640:CDS | 50.0% | |
| GAGACAGAGAGAGCAAGCAA+AGG | + | chr7_2:83975439-83975458 | None:intergenic | 50.0% | |
| CCACAACGTTACTGCCATTG+AGG | + | chr7_2:83975557-83975576 | None:intergenic | 50.0% | |
| CCTCAATGGCAGTAACGTTG+TGG | - | chr7_2:83975554-83975573 | Msa1083640:CDS | 50.0% | |
| TGCAATCAAGATTGCGGCAC+CGG | - | chr7_2:83975604-83975623 | Msa1083640:CDS | 50.0% | |
| !!! | TAGCGGTGTTTTTGGGTCCT+CGG | + | chr7_2:83975950-83975969 | None:intergenic | 50.0% |
| ! | CTGGAACGCACTTGTTGAGA+TGG | + | chr7_2:83976072-83976091 | None:intergenic | 50.0% |
| CGGTGATTGGATCCGAAACT+TGG | + | chr7_2:83976460-83976479 | None:intergenic | 50.0% | |
| CTTGTAGGTCTCTTGGGTGA+AGG | + | chr7_2:83976717-83976736 | None:intergenic | 50.0% | |
| GTTGGTGCAGCCAATCTAGA+AGG | + | chr7_2:83976795-83976814 | None:intergenic | 50.0% | |
| CTCCTTCGAGACTGGTAACA+AGG | - | chr7_2:83976961-83976980 | Msa1083640:CDS | 50.0% | |
| !! | AGCCTTGTTACCAGTCTCGA+AGG | + | chr7_2:83976966-83976985 | None:intergenic | 50.0% |
| ACGTTACGTTAGGATCCGCG+TGG | - | chr7_2:83974715-83974734 | Msa1083640:three_prime_UTR | 55.0% | |
| !! | AGGTGGGGTTTTGGCAACCA+TGG | + | chr7_2:83974762-83974781 | None:intergenic | 55.0% |
| TGTGGCAGGTGGAACAAAGC+TGG | - | chr7_2:83974968-83974987 | Msa1083640:CDS | 55.0% | |
| GCCCACCGAAATTGGCATCT+GGG | + | chr7_2:83975189-83975208 | None:intergenic | 55.0% | |
| AGCCCACCGAAATTGGCATC+TGG | + | chr7_2:83975190-83975209 | None:intergenic | 55.0% | |
| GGTTTGGGAAACTTCCCCAG+CGG | + | chr7_2:83975394-83975413 | None:intergenic | 55.0% | |
| CTAGCCCATGGCCTATTCCT+AGG | + | chr7_2:83976183-83976202 | None:intergenic | 55.0% | |
| GTAGGTCTCTTGGGTGAAGG+TGG | + | chr7_2:83976714-83976733 | None:intergenic | 55.0% | |
| !!! | CGGTGTTTTTGGGTCCTCGG+TGG | + | chr7_2:83975947-83975966 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 83974711 | 83977251 | 83974711 | ID=Msa1083640;Name=Msa1083640 |
| chr7_2 | mRNA | 83974711 | 83977251 | 83974711 | ID=Msa1083640-mRNA-1;Parent=Msa1083640;Name=Msa1083640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|1|1|4|145|521 |
| chr7_2 | exon | 83974711 | 83976132 | 83974711 | ID=Msa1083640-mRNA-1:exon:22211;Parent=Msa1083640-mRNA-1 |
| chr7_2 | exon | 83976535 | 83976599 | 83976535 | ID=Msa1083640-mRNA-1:exon:22210;Parent=Msa1083640-mRNA-1 |
| chr7_2 | exon | 83976893 | 83977035 | 83976893 | ID=Msa1083640-mRNA-1:exon:22209;Parent=Msa1083640-mRNA-1 |
| chr7_2 | exon | 83977121 | 83977251 | 83977121 | ID=Msa1083640-mRNA-1:exon:22208;Parent=Msa1083640-mRNA-1 |
| chr7_2 | five_prime_UTR | 83977202 | 83977251 | 83977202 | ID=Msa1083640-mRNA-1:five_prime_utr;Parent=Msa1083640-mRNA-1 |
| chr7_2 | CDS | 83977121 | 83977201 | 83977121 | ID=Msa1083640-mRNA-1:cds;Parent=Msa1083640-mRNA-1 |
| chr7_2 | CDS | 83976893 | 83977035 | 83976893 | ID=Msa1083640-mRNA-1:cds;Parent=Msa1083640-mRNA-1 |
| chr7_2 | CDS | 83976535 | 83976599 | 83976535 | ID=Msa1083640-mRNA-1:cds;Parent=Msa1083640-mRNA-1 |
| chr7_2 | CDS | 83974856 | 83976132 | 83974856 | ID=Msa1083640-mRNA-1:cds;Parent=Msa1083640-mRNA-1 |
| chr7_2 | three_prime_UTR | 83974711 | 83974855 | 83974711 | ID=Msa1083640-mRNA-1:three_prime_utr;Parent=Msa1083640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
