Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383140 | AES59897.2 | 75.210 | 238 | 52 | 5 | 15 | 248 | 15 | 249 | 1.63e-109 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383140 | G7I977 | 75.210 | 238 | 52 | 5 | 15 | 248 | 15 | 249 | 7.80e-110 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1383060 | Msa1383140 | 0.837741 | 4.345058e-57 | -8.615850e-47 |
| Msa1383140 | Msa1389180 | 0.801401 | 9.162288e-49 | -8.615850e-47 |
| Msa0152110 | Msa1383140 | 0.810567 | 1.081061e-50 | -8.615850e-47 |
| Msa0968410 | Msa1383140 | 0.808508 | 2.991995e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383140 | MtrunA17_Chr1g0160711 | 75.000 | 232 | 52 | 4 | 21 | 248 | 17 | 246 | 4.78e-112 | 337 |
| Msa1383140 | MtrunA17_Chr1g0160761 | 68.482 | 257 | 68 | 4 | 1 | 248 | 1 | 253 | 2.10e-107 | 325 |
| Msa1383140 | MtrunA17_Chr1g0160721 | 60.079 | 253 | 88 | 5 | 1 | 251 | 12 | 253 | 2.91e-86 | 271 |
| Msa1383140 | MtrunA17_Chr1g0160661 | 56.917 | 253 | 96 | 5 | 1 | 251 | 27 | 268 | 1.46e-82 | 256 |
| Msa1383140 | MtrunA17_Chr1g0160561 | 51.331 | 263 | 106 | 8 | 2 | 250 | 7 | 261 | 6.23e-74 | 238 |
| Msa1383140 | MtrunA17_Chr1g0160701 | 57.676 | 241 | 81 | 10 | 17 | 246 | 32 | 262 | 2.20e-70 | 229 |
| Msa1383140 | MtrunA17_Chr1g0158061 | 36.792 | 212 | 113 | 9 | 33 | 232 | 35 | 237 | 7.55e-29 | 111 |
| Msa1383140 | MtrunA17_Chr1g0157791 | 35.361 | 263 | 137 | 12 | 7 | 247 | 6 | 257 | 8.38e-29 | 115 |
| Msa1383140 | MtrunA17_Chr1g0158151 | 33.803 | 284 | 151 | 15 | 1 | 256 | 1 | 275 | 1.78e-27 | 111 |
| Msa1383140 | MtrunA17_Chr1g0158191 | 34.630 | 257 | 121 | 14 | 10 | 234 | 4 | 245 | 1.48e-26 | 108 |
| Msa1383140 | MtrunA17_Chr1g0157961 | 35.874 | 223 | 122 | 9 | 24 | 233 | 33 | 247 | 5.89e-26 | 103 |
| Msa1383140 | MtrunA17_Chr1g0157991 | 34.802 | 227 | 123 | 8 | 24 | 233 | 28 | 246 | 1.07e-25 | 106 |
| Msa1383140 | MtrunA17_Chr3g0088331 | 32.751 | 229 | 119 | 10 | 21 | 234 | 34 | 242 | 4.55e-23 | 95.5 |
| Msa1383140 | MtrunA17_Chr1g0158761 | 34.553 | 246 | 121 | 13 | 1 | 234 | 1 | 218 | 1.19e-22 | 97.4 |
| Msa1383140 | MtrunA17_Chr1g0158041 | 33.597 | 253 | 129 | 10 | 33 | 255 | 36 | 279 | 1.33e-22 | 97.4 |
| Msa1383140 | MtrunA17_Chr1g0158411 | 32.110 | 218 | 118 | 7 | 30 | 234 | 51 | 251 | 2.69e-22 | 96.7 |
| Msa1383140 | MtrunA17_Chr1g0157881 | 30.153 | 262 | 111 | 11 | 33 | 234 | 60 | 309 | 6.11e-22 | 95.5 |
| Msa1383140 | MtrunA17_Chr1g0158461 | 29.588 | 267 | 146 | 11 | 1 | 234 | 17 | 274 | 1.52e-21 | 92.0 |
| Msa1383140 | MtrunA17_Chr6g0467711 | 34.703 | 219 | 107 | 9 | 33 | 234 | 48 | 247 | 1.59e-21 | 94.4 |
| Msa1383140 | MtrunA17_Chr1g0158661 | 29.200 | 250 | 143 | 8 | 27 | 257 | 33 | 267 | 2.24e-21 | 93.6 |
| Msa1383140 | MtrunA17_Chr1g0158541 | 32.520 | 246 | 139 | 10 | 5 | 234 | 16 | 250 | 1.58e-20 | 91.3 |
| Msa1383140 | MtrunA17_Chr1g0158731 | 28.455 | 246 | 149 | 9 | 4 | 234 | 8 | 241 | 1.41e-18 | 84.0 |
| Msa1383140 | MtrunA17_Chr1g0158631 | 29.688 | 256 | 129 | 10 | 27 | 251 | 33 | 268 | 1.46e-18 | 85.5 |
| Msa1383140 | MtrunA17_Chr1g0158331 | 29.811 | 265 | 141 | 13 | 1 | 234 | 17 | 267 | 1.64e-18 | 84.0 |
| Msa1383140 | MtrunA17_Chr1g0157911 | 30.180 | 222 | 122 | 9 | 33 | 234 | 42 | 250 | 3.18e-18 | 84.3 |
| Msa1383140 | MtrunA17_Chr1g0157861 | 27.027 | 296 | 129 | 13 | 33 | 269 | 45 | 312 | 9.08e-18 | 83.2 |
| Msa1383140 | MtrunA17_Chr1g0158121 | 45.263 | 95 | 45 | 3 | 24 | 116 | 29 | 118 | 8.35e-14 | 67.0 |
| Msa1383140 | MtrunA17_Chr1g0158301 | 28.862 | 246 | 144 | 11 | 5 | 234 | 18 | 248 | 8.69e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | tig0020564:+95537 | Msa1383140:CDS |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | tig0020564:+95538 | Msa1383140:CDS |
| CATTATTCTCCTCACATAAT+AGG | 0.233904 | tig0020564:-95395 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | tig0020564:+95485 | Msa1383140:CDS |
| GTGTTCTTGCAGATGGCTAC+TGG | 0.268248 | tig0020564:+97914 | Msa1383140:intron |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | tig0020564:-95366 | None:intergenic |
| TTTATGGATTTGAACTTTCA+TGG | 0.314825 | tig0020564:+95883 | Msa1383140:CDS |
| TAAAGCCCTAAAGAATAATA+AGG | 0.353798 | tig0020564:-95543 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | tig0020564:+95768 | Msa1383140:CDS |
| CTCAATAGTCTTTGTAATGA+AGG | 0.356928 | tig0020564:+95906 | Msa1383140:CDS |
| TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | tig0020564:-97983 | None:intergenic |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | tig0020564:+95775 | Msa1383140:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | tig0020564:+95785 | Msa1383140:CDS |
| CAGCATTTATGTATAGATCC+AGG | 0.447944 | tig0020564:+95957 | Msa1383140:CDS |
| TATGAAAGCCGCGGAAGGTA+GGG | 0.458004 | tig0020564:-97944 | None:intergenic |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | tig0020564:-95599 | None:intergenic |
| TAACAGCACGACAAGGGTTA+AGG | 0.463192 | tig0020564:-95232 | None:intergenic |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | tig0020564:+95822 | Msa1383140:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | tig0020564:+95735 | Msa1383140:CDS |
| TGTTCTTGCAGATGGCTACT+GGG | 0.473780 | tig0020564:+97915 | Msa1383140:intron |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | tig0020564:+95732 | Msa1383140:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | tig0020564:+95774 | Msa1383140:CDS |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | tig0020564:-95595 | None:intergenic |
| ATATGAAAGCCGCGGAAGGT+AGG | 0.528563 | tig0020564:-97945 | None:intergenic |
| CTGGATCTATACATAAATGC+TGG | 0.534443 | tig0020564:-95956 | None:intergenic |
| CCGTCGGAATATATTGATGA+AGG | 0.536336 | tig0020564:+95675 | Msa1383140:CDS |
| TTCTACAGACATGCGTCGAA+TGG | 0.543277 | tig0020564:+95857 | Msa1383140:CDS |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | tig0020564:-95535 | None:intergenic |
| ATGAAAGCCGCGGAAGGTAG+GGG | 0.556160 | tig0020564:-97943 | None:intergenic |
| ATTGAAATCCAATAGTCGTA+TGG | 0.568248 | tig0020564:-95493 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | tig0020564:+95808 | Msa1383140:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | tig0020564:-95539 | None:intergenic |
| TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | tig0020564:+95267 | Msa1383140:CDS |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | tig0020564:-95831 | None:intergenic |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | tig0020564:-95589 | None:intergenic |
| TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | tig0020564:-97974 | None:intergenic |
| AACAAGAGTCATGTTCAAGA+AGG | 0.614007 | tig0020564:+95298 | Msa1383140:CDS |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | tig0020564:+95367 | Msa1383140:CDS |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | tig0020564:-95540 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | tig0020564:-95594 | None:intergenic |
| CCTTCATCAATATATTCCGA+CGG | 0.626569 | tig0020564:-95675 | None:intergenic |
| GTATTAGTAACAGCACGACA+AGG | 0.628217 | tig0020564:-95239 | None:intergenic |
| TATGAATTTGAAGAATACCA+TGG | 0.632125 | tig0020564:+95432 | Msa1383140:CDS |
| TTACATATGAAAGCCGCGGA+AGG | 0.648203 | tig0020564:-97949 | None:intergenic |
| TATTAGTAACAGCACGACAA+GGG | 0.651789 | tig0020564:-95238 | None:intergenic |
| GAGTCATGTTCAAGAAGGTG+CGG | 0.657869 | tig0020564:+95303 | Msa1383140:CDS |
| CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | tig0020564:-97973 | None:intergenic |
| GAGGTACAACCTATTATGTG+AGG | 0.678478 | tig0020564:+95386 | Msa1383140:CDS |
| GGGCTTACATATGAAAGCCG+CGG | 0.686004 | tig0020564:-97953 | None:intergenic |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | tig0020564:+95357 | Msa1383140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTTATATTA+TGG | + | tig0020564:96017-96036 | Msa1383140:intron | 0.0% |
| !!! | TTTTTTTTTATTTATATTAT+GGG | + | tig0020564:96018-96037 | Msa1383140:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTGTGAT+GGG | - | tig0020564:96253-96272 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTGA+TGG | - | tig0020564:96254-96273 | None:intergenic | 10.0% |
| !! | TTTCCAAATAAATTATATTT+GGG | + | tig0020564:96463-96482 | Msa1383140:intron | 10.0% |
| !! | GCATTAAATTTAAAAATAAA+AGG | - | tig0020564:97522-97541 | None:intergenic | 10.0% |
| !! | GTTTCCAAATAAATTATATT+TGG | + | tig0020564:96462-96481 | Msa1383140:intron | 15.0% |
| !! | TTCCAAATAAATTATATTTG+GGG | + | tig0020564:96464-96483 | Msa1383140:intron | 15.0% |
| !!! | AGTTACTTGTTTTTTTTTTT+GGG | - | tig0020564:96509-96528 | None:intergenic | 15.0% |
| !!! | TGTTACATTTATTTAGTTTT+TGG | + | tig0020564:97334-97353 | Msa1383140:intron | 15.0% |
| !! | GTAAATAAGAGAAAAATTAA+GGG | - | tig0020564:97636-97655 | None:intergenic | 15.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | - | tig0020564:95452-95471 | None:intergenic | 20.0% |
| !! | TACCCCAAATATAATTTATT+TGG | - | tig0020564:96469-96488 | None:intergenic | 20.0% |
| !!! | GAGTTACTTGTTTTTTTTTT+TGG | - | tig0020564:96510-96529 | None:intergenic | 20.0% |
| !! | TTCAATTTGAAGAGATTTAA+GGG | + | tig0020564:97066-97085 | Msa1383140:intron | 20.0% |
| !! | AATTTGTATTGTATCAATGT+AGG | - | tig0020564:97193-97212 | None:intergenic | 20.0% |
| !!! | GAGCATGTATTTTTATATTT+GGG | - | tig0020564:97275-97294 | None:intergenic | 20.0% |
| !!! | TGAGCATGTATTTTTATATT+TGG | - | tig0020564:97276-97295 | None:intergenic | 20.0% |
| !!! | GAAGAAATTGAGATATTTTA+AGG | + | tig0020564:97365-97384 | Msa1383140:intron | 20.0% |
| !!! | AGTATCTAGTTTAGTAATTT+TGG | - | tig0020564:97452-97471 | None:intergenic | 20.0% |
| !! | TACTAAACTAGATACTAAAA+TGG | + | tig0020564:97456-97475 | Msa1383140:intron | 20.0% |
| !! | TAGATACTAAAATGGATAAA+GGG | + | tig0020564:97464-97483 | Msa1383140:intron | 20.0% |
| !! | GGTAAATAAGAGAAAAATTA+AGG | - | tig0020564:97637-97656 | None:intergenic | 20.0% |
| !! | TATATCCATTGTAAACAAAT+TGG | + | tig0020564:97861-97880 | Msa1383140:intron | 20.0% |
| ! | TATGAATTTGAAGAATACCA+TGG | + | tig0020564:95432-95451 | Msa1383140:CDS | 25.0% |
| ! | TAAAGCCCTAAAGAATAATA+AGG | - | tig0020564:95546-95565 | None:intergenic | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | + | tig0020564:95762-95781 | Msa1383140:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCA+TGG | + | tig0020564:95883-95902 | Msa1383140:CDS | 25.0% |
| ! | GATATAATAGTACAAGAAGT+GGG | + | tig0020564:96306-96325 | Msa1383140:intron | 25.0% |
| !!! | TTGTCAAAATGGTCTTATTT+AGG | - | tig0020564:96353-96372 | None:intergenic | 25.0% |
| !!! | CATATCATGTGTGTTTTTTT+TGG | - | tig0020564:97025-97044 | None:intergenic | 25.0% |
| ! | CAAAAAAAACACACATGATA+TGG | + | tig0020564:97023-97042 | Msa1383140:intron | 25.0% |
| ! | CTTCAATTTGAAGAGATTTA+AGG | + | tig0020564:97065-97084 | Msa1383140:intron | 25.0% |
| ! | AAATCACTTGGGATTTAATT+GGG | - | tig0020564:97168-97187 | None:intergenic | 25.0% |
| !!! | TGTATTTTTATATTTGGGAG+TGG | - | tig0020564:97270-97289 | None:intergenic | 25.0% |
| ! | CTAGATACTAAAATGGATAA+AGG | + | tig0020564:97463-97482 | Msa1383140:intron | 25.0% |
| ! | AGATACTAAAATGGATAAAG+GGG | + | tig0020564:97465-97484 | Msa1383140:intron | 25.0% |
| !! | AAATGCAACTTTTATCTAGT+GGG | + | tig0020564:97562-97581 | Msa1383140:intron | 25.0% |
| ! | TTCTATTACCATTTCGAAAT+TGG | + | tig0020564:97769-97788 | Msa1383140:intron | 25.0% |
| !! | AACTACCAATTTGTTTACAA+TGG | - | tig0020564:97869-97888 | None:intergenic | 25.0% |
| ! | TTTAGCATGTCTTGAATTAA+GGG | - | tig0020564:97986-98005 | None:intergenic | 25.0% |
| !! | TTTTAGCATGTCTTGAATTA+AGG | - | tig0020564:97987-98006 | None:intergenic | 25.0% |
| CATTATTCTCCTCACATAAT+AGG | - | tig0020564:95398-95417 | None:intergenic | 30.0% | |
| ATTGAAATCCAATAGTCGTA+TGG | - | tig0020564:95496-95515 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | - | tig0020564:95538-95557 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | + | tig0020564:95537-95556 | Msa1383140:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | + | tig0020564:95538-95557 | Msa1383140:CDS | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | - | tig0020564:95597-95616 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | - | tig0020564:95602-95621 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | + | tig0020564:95732-95751 | Msa1383140:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | - | tig0020564:95764-95783 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | + | tig0020564:95761-95780 | Msa1383140:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | + | tig0020564:95808-95827 | Msa1383140:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | - | tig0020564:95834-95853 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+AGG | + | tig0020564:95906-95925 | Msa1383140:CDS | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+AGG | - | tig0020564:95987-96006 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | + | tig0020564:95987-96006 | Msa1383140:intron | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | + | tig0020564:96160-96179 | Msa1383140:intron | 30.0% |
| CGATATAATAGTACAAGAAG+TGG | + | tig0020564:96305-96324 | Msa1383140:intron | 30.0% | |
| GTCATGTATGTTTGTCAAAA+TGG | - | tig0020564:96364-96383 | None:intergenic | 30.0% | |
| CAAGTAACTCCTTAAAGTTA+AGG | + | tig0020564:96520-96539 | Msa1383140:intron | 30.0% | |
| ! | GCTTTCTTTTACATGATTTC+AGG | - | tig0020564:96578-96597 | None:intergenic | 30.0% |
| !! | TGTTTGGTTTGACTTTAGTT+TGG | - | tig0020564:96864-96883 | None:intergenic | 30.0% |
| ATTTCATCTTTAGGTGGTTA+GGG | - | tig0020564:96941-96960 | None:intergenic | 30.0% | |
| TATTTCATCTTTAGGTGGTT+AGG | - | tig0020564:96942-96961 | None:intergenic | 30.0% | |
| CTAAAGATGAAATACCACAT+CGG | + | tig0020564:96948-96967 | Msa1383140:intron | 30.0% | |
| AAAGTGAAGTAACAAACTAG+TGG | + | tig0020564:96978-96997 | Msa1383140:intron | 30.0% | |
| AAGTGAAGTAACAAACTAGT+GGG | + | tig0020564:96979-96998 | Msa1383140:intron | 30.0% | |
| !!! | GTGTGTTTTTTTTGGTTTTG+CGG | - | tig0020564:97017-97036 | None:intergenic | 30.0% |
| AATCACTTGGGATTTAATTG+GGG | - | tig0020564:97167-97186 | None:intergenic | 30.0% | |
| GAAATCACTTGGGATTTAAT+TGG | - | tig0020564:97169-97188 | None:intergenic | 30.0% | |
| ! | GAAATGCAACTTTTATCTAG+TGG | + | tig0020564:97561-97580 | Msa1383140:intron | 30.0% |
| ATGTAACACCAATTTCGAAA+TGG | - | tig0020564:97780-97799 | None:intergenic | 30.0% | |
| TATTAGTAACAGCACGACAA+GGG | - | tig0020564:95241-95260 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | + | tig0020564:95298-95317 | Msa1383140:CDS | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | + | tig0020564:95331-95350 | Msa1383140:CDS | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | - | tig0020564:95344-95363 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | - | tig0020564:95542-95561 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | - | tig0020564:95543-95562 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | - | tig0020564:95598-95617 | None:intergenic | 35.0% | |
| CCTTCATCAATATATTCCGA+CGG | - | tig0020564:95678-95697 | None:intergenic | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | + | tig0020564:95735-95754 | Msa1383140:CDS | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | - | tig0020564:95959-95978 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | + | tig0020564:95957-95976 | Msa1383140:CDS | 35.0% | |
| AATCTTTATCATGTGCCGAA+GGG | - | tig0020564:96062-96081 | None:intergenic | 35.0% | |
| AGAAGTGGGAAATACTTCTA+TGG | + | tig0020564:96320-96339 | Msa1383140:intron | 35.0% | |
| ACACGCACACAACTTAAAAT+AGG | - | tig0020564:96444-96463 | None:intergenic | 35.0% | |
| ! | ACATGATTTCAGGTATGCTT+AGG | - | tig0020564:96568-96587 | None:intergenic | 35.0% |
| !! | TATTAGTGTTGGTCTTGTGT+TGG | - | tig0020564:96703-96722 | None:intergenic | 35.0% |
| ACAAGACCAACACTAATAGT+AGG | + | tig0020564:96705-96724 | Msa1383140:intron | 35.0% | |
| CATGTACCTACTATTAGTGT+TGG | - | tig0020564:96714-96733 | None:intergenic | 35.0% | |
| CAACACTAATAGTAGGTACA+TGG | + | tig0020564:96712-96731 | Msa1383140:intron | 35.0% | |
| TCGTATTGGAAGTAGTTTCT+TGG | - | tig0020564:96745-96764 | None:intergenic | 35.0% | |
| ! | ACAGGGAGAAATTTTCGTAT+TGG | - | tig0020564:96759-96778 | None:intergenic | 35.0% |
| !! | TATTGATCAGTTGGTAGACA+GGG | - | tig0020564:96776-96795 | None:intergenic | 35.0% |
| TTTCAGACACACCATACAAT+AGG | + | tig0020564:96835-96854 | Msa1383140:intron | 35.0% | |
| TAGTTTGGAAGCCTATTGTA+TGG | - | tig0020564:96849-96868 | None:intergenic | 35.0% | |
| ! | ACTGGGTAGTAGTTTTTGTT+TGG | - | tig0020564:96880-96899 | None:intergenic | 35.0% |
| TGTGGTATTTCATCTTTAGG+TGG | - | tig0020564:96947-96966 | None:intergenic | 35.0% | |
| CGATGTGGTATTTCATCTTT+AGG | - | tig0020564:96950-96969 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTTTGGTTTTGCGG+AGG | - | tig0020564:97014-97033 | None:intergenic | 35.0% |
| TTTGAAGAGATTTAAGGGAG+TGG | + | tig0020564:97071-97090 | Msa1383140:intron | 35.0% | |
| ! | TTCTCAACACCTTCTAAGAA+GGG | + | tig0020564:97124-97143 | Msa1383140:intron | 35.0% |
| CAATGTAGGTGAAATCACTT+GGG | - | tig0020564:97179-97198 | None:intergenic | 35.0% | |
| TCAATGTAGGTGAAATCACT+TGG | - | tig0020564:97180-97199 | None:intergenic | 35.0% | |
| TTCCACATCCATATGTTAGA+GGG | + | tig0020564:97678-97697 | Msa1383140:intron | 35.0% | |
| GCAAGAACACAGAAAAAAGA+TGG | - | tig0020564:97904-97923 | None:intergenic | 35.0% | |
| ! | TTTTTCTGTGTTCTTGCAGA+TGG | + | tig0020564:97907-97926 | Msa1383140:intron | 35.0% |
| CTTGAATTAAGGGAATGTGA+GGG | - | tig0020564:97976-97995 | None:intergenic | 35.0% | |
| TCTTGAATTAAGGGAATGTG+AGG | - | tig0020564:97977-97996 | None:intergenic | 35.0% | |
| GTATTAGTAACAGCACGACA+AGG | - | tig0020564:95242-95261 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | + | tig0020564:95267-95286 | Msa1383140:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | - | tig0020564:95345-95364 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | - | tig0020564:95348-95367 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | + | tig0020564:95357-95376 | Msa1383140:CDS | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | + | tig0020564:95386-95405 | Msa1383140:CDS | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | + | tig0020564:95485-95504 | Msa1383140:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | - | tig0020564:95592-95611 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | + | tig0020564:95591-95610 | Msa1383140:CDS | 40.0% |
| TGTGAGCTGTAAAAATCCGT+CGG | + | tig0020564:95659-95678 | Msa1383140:CDS | 40.0% | |
| CCGTCGGAATATATTGATGA+AGG | + | tig0020564:95675-95694 | Msa1383140:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | + | tig0020564:95768-95787 | Msa1383140:CDS | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | + | tig0020564:95867-95886 | Msa1383140:CDS | 40.0% |
| GAATCTTTATCATGTGCCGA+AGG | - | tig0020564:96063-96082 | None:intergenic | 40.0% | |
| ! | TTGGGGCATCCTTAACTTTA+AGG | - | tig0020564:96532-96551 | None:intergenic | 40.0% |
| TTAGGAAGCTAGTGAGCATT+GGG | - | tig0020564:96550-96569 | None:intergenic | 40.0% | |
| !! | CTATTGATCAGTTGGTAGAC+AGG | - | tig0020564:96777-96796 | None:intergenic | 40.0% |
| GTCTACCAACTGATCAATAG+AGG | + | tig0020564:96777-96796 | Msa1383140:intron | 40.0% | |
| GACAACCTCTATTGATCAGT+TGG | - | tig0020564:96785-96804 | None:intergenic | 40.0% | |
| GTTTGTGCACAATCAGTCAA+GGG | - | tig0020564:96909-96928 | None:intergenic | 40.0% | |
| AGTTTGTGCACAATCAGTCA+AGG | - | tig0020564:96910-96929 | None:intergenic | 40.0% | |
| TCTTTAGGTGGTTAGGGATT+TGG | - | tig0020564:96935-96954 | None:intergenic | 40.0% | |
| AGATGAAATACCACATCGGA+AGG | + | tig0020564:96952-96971 | Msa1383140:intron | 40.0% | |
| TGAAGTAACAAACTAGTGGG+TGG | + | tig0020564:96982-97001 | Msa1383140:intron | 40.0% | |
| AGGGAGTGGAAATCCTATAT+CGG | + | tig0020564:97085-97104 | Msa1383140:intron | 40.0% | |
| !! | CTTCTTAGAAGGTGTTGAGA+AGG | - | tig0020564:97125-97144 | None:intergenic | 40.0% |
| ! | CTTCTCAACACCTTCTAAGA+AGG | + | tig0020564:97123-97142 | Msa1383140:intron | 40.0% |
| ! | TCTCAACACCTTCTAAGAAG+GGG | + | tig0020564:97125-97144 | Msa1383140:intron | 40.0% |
| TATATTTGGGAGTGGTAGCT+AGG | - | tig0020564:97262-97281 | None:intergenic | 40.0% | |
| ! | GACTAGTGGGAAAGGTATAA+TGG | - | tig0020564:97658-97677 | None:intergenic | 40.0% |
| TATGGATGTGGAAGACTAGT+GGG | - | tig0020564:97671-97690 | None:intergenic | 40.0% | |
| ATATGGATGTGGAAGACTAG+TGG | - | tig0020564:97672-97691 | None:intergenic | 40.0% | |
| CTTCCACATCCATATGTTAG+AGG | + | tig0020564:97677-97696 | Msa1383140:intron | 40.0% | |
| ACTCAACAAGTGAGTGAGTA+CGG | + | tig0020564:97826-97845 | Msa1383140:intron | 40.0% | |
| TAACAGCACGACAAGGGTTA+AGG | - | tig0020564:95235-95254 | None:intergenic | 45.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | + | tig0020564:95303-95322 | Msa1383140:CDS | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | - | tig0020564:95369-95388 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | + | tig0020564:95367-95386 | Msa1383140:CDS | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | + | tig0020564:95774-95793 | Msa1383140:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | + | tig0020564:95822-95841 | Msa1383140:CDS | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | + | tig0020564:95857-95876 | Msa1383140:CDS | 45.0% | |
| ! | TAGGAAGCTAGTGAGCATTG+GGG | - | tig0020564:96549-96568 | None:intergenic | 45.0% |
| CTTAGGAAGCTAGTGAGCAT+TGG | - | tig0020564:96551-96570 | None:intergenic | 45.0% | |
| AAAAAAGACACGCCGTAACG+AGG | + | tig0020564:96598-96617 | Msa1383140:intron | 45.0% | |
| ! | TGGCCTTTCTTTGGTTGGTT+GGG | - | tig0020564:96643-96662 | None:intergenic | 45.0% |
| ATGGCCTTTCTTTGGTTGGT+TGG | - | tig0020564:96644-96663 | None:intergenic | 45.0% | |
| TCTGAAAGTCTCGCAATGAG+CGG | - | tig0020564:96822-96841 | None:intergenic | 45.0% | |
| !! | TCACTTTTGTCCTTCCGATG+TGG | - | tig0020564:96965-96984 | None:intergenic | 45.0% |
| GTTGGATGCTTCTCCGATAT+AGG | - | tig0020564:97101-97120 | None:intergenic | 45.0% | |
| !! | AGAAGGTGTTGAGAAGGAGT+TGG | - | tig0020564:97119-97138 | None:intergenic | 45.0% |
| CTCTTCATCCCCTTCTTAGA+AGG | - | tig0020564:97136-97155 | None:intergenic | 45.0% | |
| ATGTGGAAGACTAGTGGGAA+AGG | - | tig0020564:97666-97685 | None:intergenic | 45.0% | |
| CTCCCTCTAACATATGGATG+TGG | - | tig0020564:97683-97702 | None:intergenic | 45.0% | |
| CTGACACTCCCTCTAACATA+TGG | - | tig0020564:97689-97708 | None:intergenic | 45.0% | |
| TGTTCTTGCAGATGGCTACT+GGG | + | tig0020564:97915-97934 | Msa1383140:intron | 45.0% | |
| TTACATATGAAAGCCGCGGA+AGG | - | tig0020564:97952-97971 | None:intergenic | 45.0% | |
| !! | CATTAAATTTAAAAATAAAA+GGG | - | tig0020564:97521-97540 | None:intergenic | 5.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | + | tig0020564:95775-95794 | Msa1383140:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | + | tig0020564:95785-95804 | Msa1383140:CDS | 50.0% |
| ! | GTGAGTGTTTGAGGCAAACC+TGG | - | tig0020564:95978-95997 | None:intergenic | 50.0% |
| TGCTGATGACATGTGCCCTT+CGG | + | tig0020564:96044-96063 | Msa1383140:intron | 50.0% | |
| ! | TTCTTTGGTTGGTTGGGTGC+TGG | - | tig0020564:96637-96656 | None:intergenic | 50.0% |
| GCACCCAACCAACCAAAGAA+AGG | + | tig0020564:96637-96656 | Msa1383140:intron | 50.0% | |
| AGGGATGGCCTTTCTTTGGT+TGG | - | tig0020564:96648-96667 | None:intergenic | 50.0% | |
| !! | CGCAATGAGCGGATTTTCTC+TGG | - | tig0020564:96811-96830 | None:intergenic | 50.0% |
| ! | TCAGTCAAGGGTTGGCAACT+GGG | - | tig0020564:96897-96916 | None:intergenic | 50.0% |
| ! | ATCAGTCAAGGGTTGGCAAC+TGG | - | tig0020564:96898-96917 | None:intergenic | 50.0% |
| GTGCACAATCAGTCAAGGGT+TGG | - | tig0020564:96905-96924 | None:intergenic | 50.0% | |
| AATGCTAGCAGACATGCAGC+AGG | + | tig0020564:97229-97248 | Msa1383140:intron | 50.0% | |
| GTGTTCTTGCAGATGGCTAC+TGG | + | tig0020564:97914-97933 | Msa1383140:intron | 50.0% | |
| TATGAAAGCCGCGGAAGGTA+GGG | - | tig0020564:97947-97966 | None:intergenic | 50.0% | |
| ATATGAAAGCCGCGGAAGGT+AGG | - | tig0020564:97948-97967 | None:intergenic | 50.0% | |
| GGGCTTACATATGAAAGCCG+CGG | - | tig0020564:97956-97975 | None:intergenic | 50.0% | |
| AAAGACACGCCGTAACGAGG+AGG | + | tig0020564:96601-96620 | Msa1383140:intron | 55.0% | |
| GTGCAGGGATGGCCTTTCTT+TGG | - | tig0020564:96652-96671 | None:intergenic | 55.0% | |
| AGCCGACATCGTTGGGTGAT+GGG | - | tig0020564:96680-96699 | None:intergenic | 55.0% | |
| GTGTTGGAGCCGACATCGTT+GGG | - | tig0020564:96687-96706 | None:intergenic | 55.0% | |
| TGTGTTGGAGCCGACATCGT+TGG | - | tig0020564:96688-96707 | None:intergenic | 55.0% | |
| ! | GGTTTTTCCCCTACCTTCCG+CGG | + | tig0020564:97936-97955 | Msa1383140:CDS | 55.0% |
| ATGAAAGCCGCGGAAGGTAG+GGG | - | tig0020564:97946-97965 | None:intergenic | 55.0% | |
| ACACGCCGTAACGAGGAGGA+CGG | + | tig0020564:96605-96624 | Msa1383140:intron | 60.0% | |
| GTTGGCCGTCCTCCTCGTTA+CGG | - | tig0020564:96613-96632 | None:intergenic | 60.0% | |
| !! | GGTTGGTTGGGTGCTGGAGT+TGG | - | tig0020564:96631-96650 | None:intergenic | 60.0% |
| !! | CGACATCGTTGGGTGATGGG+GGG | - | tig0020564:96677-96696 | None:intergenic | 60.0% |
| ! | CCGACATCGTTGGGTGATGG+GGG | - | tig0020564:96678-96697 | None:intergenic | 60.0% |
| CCCCCATCACCCAACGATGT+CGG | + | tig0020564:96675-96694 | Msa1383140:intron | 60.0% | |
| GCCGACATCGTTGGGTGATG+GGG | - | tig0020564:96679-96698 | None:intergenic | 60.0% | |
| GAGCCGACATCGTTGGGTGA+TGG | - | tig0020564:96681-96700 | None:intergenic | 60.0% | |
| GATGGGGGGTAGTGCAGGGA+TGG | - | tig0020564:96663-96682 | None:intergenic | 65.0% | |
| !! | GGGTGATGGGGGGTAGTGCA+GGG | - | tig0020564:96667-96686 | None:intergenic | 65.0% |
| !! | TGGGTGATGGGGGGTAGTGC+AGG | - | tig0020564:96668-96687 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020564 | gene | 95225 | 98014 | 95225 | ID=Msa1383140;Name=Msa1383140 |
| tig0020564 | mRNA | 95225 | 98014 | 95225 | ID=Msa1383140-mRNA-1;Parent=Msa1383140;Name=Msa1383140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|280 |
| tig0020564 | exon | 95225 | 95978 | 95225 | ID=Msa1383140-mRNA-1:exon:8426;Parent=Msa1383140-mRNA-1 |
| tig0020564 | exon | 97926 | 98014 | 97926 | ID=Msa1383140-mRNA-1:exon:8427;Parent=Msa1383140-mRNA-1 |
| tig0020564 | CDS | 95225 | 95978 | 95225 | ID=Msa1383140-mRNA-1:cds;Parent=Msa1383140-mRNA-1 |
| tig0020564 | CDS | 97926 | 98014 | 97926 | ID=Msa1383140-mRNA-1:cds;Parent=Msa1383140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
