Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0968410 | RHN77992.1 | 71.875 | 256 | 62 | 6 | 4 | 255 | 2 | 251 | 2.54e-112 | 347 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011790 | Msa0968410 | 0.808543 | 2.940926e-50 | -8.615850e-47 |
Msa0021340 | Msa0968410 | 0.801682 | 8.023674e-49 | -8.615850e-47 |
Msa0060790 | Msa0968410 | 0.883731 | 3.499389e-71 | -8.615850e-47 |
Msa0152110 | Msa0968410 | 0.964021 | 8.346448e-123 | -8.615850e-47 |
Msa0229630 | Msa0968410 | 0.852751 | 3.758103e-61 | -8.615850e-47 |
Msa0968410 | Msa0968430 | 0.893201 | 7.836920e-75 | -8.615850e-47 |
Msa0968410 | Msa1383140 | 0.808508 | 2.991995e-50 | -8.615850e-47 |
Msa0968410 | Msa1389180 | 0.826629 | 2.443330e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0968410 | MtrunA17_Chr1g0160711 | 71.875 | 256 | 62 | 6 | 4 | 255 | 2 | 251 | 2.34e-116 | 347 |
Msa0968410 | MtrunA17_Chr1g0160761 | 66.148 | 257 | 74 | 4 | 1 | 248 | 1 | 253 | 4.99e-104 | 316 |
Msa0968410 | MtrunA17_Chr1g0160661 | 62.451 | 253 | 82 | 5 | 1 | 251 | 27 | 268 | 6.71e-95 | 288 |
Msa0968410 | MtrunA17_Chr1g0160721 | 57.529 | 259 | 97 | 5 | 1 | 257 | 12 | 259 | 1.52e-84 | 266 |
Msa0968410 | MtrunA17_Chr1g0160561 | 51.908 | 262 | 105 | 7 | 3 | 250 | 7 | 261 | 4.72e-77 | 246 |
Msa0968410 | MtrunA17_Chr1g0160701 | 56.627 | 249 | 86 | 11 | 18 | 255 | 33 | 270 | 1.51e-71 | 232 |
Msa0968410 | MtrunA17_Chr1g0158061 | 35.514 | 214 | 117 | 8 | 33 | 234 | 35 | 239 | 7.75e-30 | 114 |
Msa0968410 | MtrunA17_Chr1g0158151 | 36.327 | 245 | 124 | 12 | 25 | 247 | 27 | 261 | 9.90e-29 | 115 |
Msa0968410 | MtrunA17_Chr1g0157961 | 35.714 | 224 | 123 | 8 | 24 | 234 | 33 | 248 | 1.09e-28 | 111 |
Msa0968410 | MtrunA17_Chr1g0157791 | 35.270 | 241 | 128 | 10 | 24 | 247 | 28 | 257 | 3.09e-28 | 113 |
Msa0968410 | MtrunA17_Chr1g0157991 | 35.526 | 228 | 122 | 8 | 24 | 234 | 28 | 247 | 8.37e-28 | 112 |
Msa0968410 | MtrunA17_Chr3g0088331 | 34.167 | 240 | 121 | 11 | 23 | 247 | 36 | 253 | 1.06e-26 | 105 |
Msa0968410 | MtrunA17_Chr1g0158411 | 32.283 | 254 | 134 | 9 | 2 | 234 | 15 | 251 | 2.10e-26 | 108 |
Msa0968410 | MtrunA17_Chr1g0158191 | 35.021 | 237 | 111 | 12 | 24 | 233 | 24 | 244 | 9.63e-26 | 106 |
Msa0968410 | MtrunA17_Chr1g0158461 | 31.227 | 269 | 140 | 12 | 1 | 234 | 16 | 274 | 7.70e-25 | 101 |
Msa0968410 | MtrunA17_Chr1g0157881 | 30.916 | 262 | 109 | 11 | 33 | 234 | 60 | 309 | 1.02e-23 | 100 |
Msa0968410 | MtrunA17_Chr1g0158041 | 33.790 | 219 | 119 | 7 | 33 | 234 | 36 | 245 | 2.25e-23 | 99.8 |
Msa0968410 | MtrunA17_Chr6g0467711 | 35.160 | 219 | 106 | 9 | 33 | 234 | 48 | 247 | 2.92e-23 | 99.4 |
Msa0968410 | MtrunA17_Chr1g0158761 | 30.672 | 238 | 126 | 10 | 8 | 234 | 9 | 218 | 1.10e-21 | 94.7 |
Msa0968410 | MtrunA17_Chr1g0158661 | 28.409 | 264 | 151 | 9 | 13 | 257 | 23 | 267 | 1.49e-21 | 94.4 |
Msa0968410 | MtrunA17_Chr1g0158631 | 29.496 | 278 | 145 | 10 | 5 | 251 | 11 | 268 | 2.44e-20 | 90.5 |
Msa0968410 | MtrunA17_Chr1g0158731 | 29.688 | 256 | 143 | 8 | 1 | 234 | 1 | 241 | 4.88e-20 | 87.8 |
Msa0968410 | MtrunA17_Chr1g0158541 | 31.707 | 246 | 141 | 10 | 5 | 234 | 16 | 250 | 9.32e-20 | 89.0 |
Msa0968410 | MtrunA17_Chr1g0157861 | 27.365 | 296 | 128 | 13 | 33 | 269 | 45 | 312 | 2.58e-19 | 87.8 |
Msa0968410 | MtrunA17_Chr1g0158331 | 30.075 | 266 | 140 | 12 | 1 | 234 | 16 | 267 | 2.99e-19 | 85.9 |
Msa0968410 | MtrunA17_Chr1g0157911 | 30.631 | 222 | 121 | 9 | 33 | 234 | 42 | 250 | 1.69e-18 | 85.1 |
Msa0968410 | MtrunA17_Chr1g0158301 | 28.512 | 242 | 143 | 10 | 8 | 234 | 22 | 248 | 4.76e-15 | 75.1 |
Msa0968410 | MtrunA17_Chr1g0158121 | 45.263 | 95 | 45 | 3 | 24 | 116 | 29 | 118 | 9.87e-15 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 53 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | 6_3:+98768959 | Msa0968410:CDS |
ATTTAGCATGTCTTGAATTA+AGG | 0.180260 | 6_3:-98772138 | None:intergenic |
TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | 6_3:+98768960 | Msa0968410:CDS |
CATTATTGTCCTCACATAAT+AGG | 0.236387 | 6_3:-98768817 | None:intergenic |
CAACTTCACCATACGACTAT+TGG | 0.252740 | 6_3:+98768907 | Msa0968410:CDS |
TTCCTTAACATCCTTTGTTA+TGG | 0.276218 | 6_3:+98768652 | Msa0968410:CDS |
ATAACATCAGCCACCCTTTC+CGG | 0.297512 | 6_3:+98768753 | Msa0968410:CDS |
TTTATGGATTTGAACTTTCA+TGG | 0.314825 | 6_3:+98769305 | Msa0968410:CDS |
CTCAATAGTCTTTGTAATGA+TGG | 0.335428 | 6_3:+98769328 | Msa0968410:CDS |
TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | 6_3:-98768965 | None:intergenic |
TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 6_3:+98769190 | Msa0968410:CDS |
TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | 6_3:-98772137 | None:intergenic |
CACCATAACAAAGGATGTTA+AGG | 0.392467 | 6_3:-98768654 | None:intergenic |
CTAATTAGCAACAAAGTGTA+TGG | 0.423091 | 6_3:+98768689 | Msa0968410:CDS |
CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 6_3:+98769197 | Msa0968410:CDS |
ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 6_3:+98769207 | Msa0968410:CDS |
CAGCATTTATGTATAGATCC+AGG | 0.447944 | 6_3:+98769379 | Msa0968410:CDS |
TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | 6_3:-98769021 | None:intergenic |
CTTAACATCCTTTGTTATGG+TGG | 0.464676 | 6_3:+98768655 | Msa0968410:CDS |
ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | 6_3:+98769244 | Msa0968410:CDS |
GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | 6_3:+98769157 | Msa0968410:CDS |
TACGAGAATTCTTTCTATGT+TGG | 0.482804 | 6_3:+98769154 | Msa0968410:CDS |
TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 6_3:+98769196 | Msa0968410:CDS |
CAGAAGAATGTGGTGACAAA+AGG | 0.492801 | 6_3:+98768789 | Msa0968410:CDS |
ATGTTCTTGCAGATGACCAC+TGG | 0.505032 | 6_3:+98772068 | Msa0968410:intron |
AGGGCTTACATATGAAAGCC+GGG | 0.509438 | 6_3:-98772108 | None:intergenic |
TATGAAAGCCGGGGAAGGTA+GGG | 0.509508 | 6_3:-98772098 | None:intergenic |
ATATGAAAGCCGGGGAAGGT+AGG | 0.518798 | 6_3:-98772099 | None:intergenic |
GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | 6_3:-98769017 | None:intergenic |
CGGTCGGAATATATTGATGA+AGG | 0.526826 | 6_3:+98769097 | Msa0968410:CDS |
CTGGATCTATACATAAATGC+TGG | 0.539585 | 6_3:-98769378 | None:intergenic |
TTCTACAGACATGCGTCGAA+TGG | 0.543277 | 6_3:+98769279 | Msa0968410:CDS |
GAGGGCTTACATATGAAAGC+CGG | 0.545576 | 6_3:-98772109 | None:intergenic |
TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | 6_3:-98768957 | None:intergenic |
TAATTAGCAACAAAGTGTAT+GGG | 0.560784 | 6_3:+98768690 | Msa0968410:CDS |
ATTGAAATCCAATAGTCGTA+TGG | 0.568248 | 6_3:-98768915 | None:intergenic |
AATCTATGTATCTCACATCA+TGG | 0.571651 | 6_3:+98769230 | Msa0968410:CDS |
GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | 6_3:-98768961 | None:intergenic |
ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | 6_3:-98769253 | None:intergenic |
ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | 6_3:-98769011 | None:intergenic |
TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | 6_3:-98772128 | None:intergenic |
TTACATATGAAAGCCGGGGA+AGG | 0.620719 | 6_3:-98772103 | None:intergenic |
AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | 6_3:-98768962 | None:intergenic |
TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | 6_3:-98769016 | None:intergenic |
AATTAGCAACAAAGTGTATG+GGG | 0.626387 | 6_3:+98768691 | Msa0968410:CDS |
CACTACTGCCACCATAACAA+AGG | 0.635961 | 6_3:-98768663 | None:intergenic |
TCGGAATATATTGATGAAGG+TGG | 0.639500 | 6_3:+98769100 | Msa0968410:CDS |
CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | 6_3:-98772127 | None:intergenic |
GAGTCATGTTCAAGAAAGTG+CGG | 0.671036 | 6_3:+98768725 | Msa0968410:CDS |
TATGAATTTGAAGAACACCA+TGG | 0.674399 | 6_3:+98768854 | Msa0968410:CDS |
AAGGTACAACCTATTATGTG+AGG | 0.675468 | 6_3:+98768808 | Msa0968410:CDS |
AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 6_3:+98768779 | Msa0968410:CDS |
GGGCTTACATATGAAAGCCG+GGG | 0.696923 | 6_3:-98772107 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTATTTTTATATTA+TGG | + | chr6_3:98769438-98769457 | Msa0968410:intron | 0.0% |
!!! | TTTTTTTATTTTTATATTAT+GGG | + | chr6_3:98769439-98769458 | Msa0968410:intron | 0.0% |
!!! | TTTTTTTTTTTTTTTTGTGA+TGG | - | chr6_3:98769676-98769695 | None:intergenic | 10.0% |
!!! | AATAATAATTTTTGTTTTTG+GGG | - | chr6_3:98770194-98770213 | None:intergenic | 10.0% |
!!! | CAATAATAATTTTTGTTTTT+GGG | - | chr6_3:98770195-98770214 | None:intergenic | 10.0% |
!!! | ACAATAATAATTTTTGTTTT+TGG | - | chr6_3:98770196-98770215 | None:intergenic | 10.0% |
!!! | AAATTATAATTTTTTAGGTT+TGG | - | chr6_3:98770760-98770779 | None:intergenic | 10.0% |
!!! | CCTATAAATTATAATTTTTT+AGG | - | chr6_3:98770765-98770784 | None:intergenic | 10.0% |
!! | CCTAAAAAATTATAATTTAT+AGG | + | chr6_3:98770762-98770781 | Msa0968410:intron | 10.0% |
!!! | TATCTTTAAAATTAATATGT+TGG | + | chr6_3:98770800-98770819 | Msa0968410:intron | 10.0% |
!! | AAAAATACGTATTATTCAAT+TGG | + | chr6_3:98769829-98769848 | Msa0968410:intron | 15.0% |
!! | TTCCAAATAAATTATATTTG+AGG | + | chr6_3:98769886-98769905 | Msa0968410:intron | 15.0% |
!! | TACCTCAAATATAATTTATT+TGG | - | chr6_3:98769891-98769910 | None:intergenic | 15.0% |
!! | AAAATTATTATTGTAGTAGT+TGG | + | chr6_3:98770202-98770221 | Msa0968410:intron | 15.0% |
!!! | TTCTTATTTATGCTAATTTT+CGG | - | chr6_3:98770291-98770310 | None:intergenic | 15.0% |
!! | ATTGATAGATTTATTTGTAT+TGG | + | chr6_3:98770330-98770349 | Msa0968410:intron | 15.0% |
!!! | ATTTTGTAAATAGTGATTTA+TGG | + | chr6_3:98770476-98770495 | Msa0968410:intron | 15.0% |
!!! | ATTGAATAAATTTGTTTGTA+AGG | + | chr6_3:98770733-98770752 | Msa0968410:intron | 15.0% |
!! | GTAAATAAGAGAAAAATTAA+GGG | - | chr6_3:98771792-98771811 | None:intergenic | 15.0% |
!! | TGTAAATAAGAGAAAAATTA+AGG | - | chr6_3:98771793-98771812 | None:intergenic | 15.0% |
!!! | ATTGTACATAATATTTTCCA+TGG | - | chr6_3:98768874-98768893 | None:intergenic | 20.0% |
!!! | AGTTACTTGTTTTTTTTTCT+GGG | - | chr6_3:98769931-98769950 | None:intergenic | 20.0% |
!!! | TCTTTTTTTCTTTCTTTTAC+AGG | - | chr6_3:98770008-98770027 | None:intergenic | 20.0% |
!! | AGCTCAATATTTATTAATTG+AGG | - | chr6_3:98770248-98770267 | None:intergenic | 20.0% |
!!! | TAGATTTATTTGTATTGGTT+TGG | + | chr6_3:98770335-98770354 | Msa0968410:intron | 20.0% |
!! | TAGTGATTTATGGATAAAAT+TGG | + | chr6_3:98770486-98770505 | Msa0968410:intron | 20.0% |
!! | CAATAGCTATTTAAAAAAGT+TGG | - | chr6_3:98770532-98770551 | None:intergenic | 20.0% |
!!! | AAAAAAAGTGTTTTTAGTCT+TGG | - | chr6_3:98770683-98770702 | None:intergenic | 20.0% |
!!! | TCATGTTTTTAAGGTATTTT+AGG | - | chr6_3:98771038-98771057 | None:intergenic | 20.0% |
!! | CTTAAAAACATGATATATGA+CGG | + | chr6_3:98771045-98771064 | Msa0968410:intron | 20.0% |
!! | GAAACTCCAAATATATATTT+CGG | + | chr6_3:98771205-98771224 | Msa0968410:intron | 20.0% |
!! | ATTTGTATTGTGTTAATGTA+GGG | - | chr6_3:98771373-98771392 | None:intergenic | 20.0% |
!! | AATTTGTATTGTGTTAATGT+AGG | - | chr6_3:98771374-98771393 | None:intergenic | 20.0% |
!! | TACATTAACACAATACAAAT+TGG | + | chr6_3:98771373-98771392 | Msa0968410:intron | 20.0% |
!!! | GACCATGTATTTTTATATTT+GGG | - | chr6_3:98771447-98771466 | None:intergenic | 20.0% |
!!! | TGACCATGTATTTTTATATT+TGG | - | chr6_3:98771448-98771467 | None:intergenic | 20.0% |
!!! | AGTATCTAGTTTAGTAATTT+TGG | - | chr6_3:98771605-98771624 | None:intergenic | 20.0% |
!! | TACTAAACTAGATACTAAAA+TGG | + | chr6_3:98771609-98771628 | Msa0968410:intron | 20.0% |
!! | TAGATACTAAAATGGATAAA+GGG | + | chr6_3:98771617-98771636 | Msa0968410:intron | 20.0% |
!!! | TTCTTTTACCGTTTAAAAAT+TGG | + | chr6_3:98771923-98771942 | Msa0968410:intron | 20.0% |
! | TAATTAGCAACAAAGTGTAT+GGG | + | chr6_3:98768690-98768709 | Msa0968410:CDS | 25.0% |
! | TATATGTGAGCTGTAAAAAT+CGG | + | chr6_3:98769077-98769096 | Msa0968410:CDS | 25.0% |
! | CAAAAATCTCTTTCAGATTT+GGG | + | chr6_3:98769184-98769203 | Msa0968410:CDS | 25.0% |
! | TTTATGGATTTGAACTTTCA+TGG | + | chr6_3:98769305-98769324 | Msa0968410:CDS | 25.0% |
!!! | TTGTCAAAATGGTCTTATTT+AGG | - | chr6_3:98769775-98769794 | None:intergenic | 25.0% |
! | GTTATGTATGTTTGTCAAAA+TGG | - | chr6_3:98769786-98769805 | None:intergenic | 25.0% |
!!! | GAGTTACTTGTTTTTTTTTC+TGG | - | chr6_3:98769932-98769951 | None:intergenic | 25.0% |
! | TATTTATTAATTGAGGTAGC+TGG | - | chr6_3:98770241-98770260 | None:intergenic | 25.0% |
!! | ATTTTCCAATGTACACAAAT+AGG | - | chr6_3:98770443-98770462 | None:intergenic | 25.0% |
!! | CTTAGTTAATTTTCATGCAT+TGG | + | chr6_3:98770577-98770596 | Msa0968410:intron | 25.0% |
!!! | TTCATGCATTGGTTAATTTT+TGG | + | chr6_3:98770588-98770607 | Msa0968410:intron | 25.0% |
!!! | CGTCATATATCATGTTTTTA+AGG | - | chr6_3:98771047-98771066 | None:intergenic | 25.0% |
!!! | CTTGTAATGCTGTTTTTATT+TGG | - | chr6_3:98771280-98771299 | None:intergenic | 25.0% |
! | TTTGTATTGTGTTAATGTAG+GGG | - | chr6_3:98771372-98771391 | None:intergenic | 25.0% |
!!! | TGTATTTTTATATTTGGGAG+TGG | - | chr6_3:98771442-98771461 | None:intergenic | 25.0% |
! | CTCCCAAATATAAAAATACA+TGG | + | chr6_3:98771442-98771461 | Msa0968410:intron | 25.0% |
! | CTAGATACTAAAATGGATAA+AGG | + | chr6_3:98771616-98771635 | Msa0968410:intron | 25.0% |
! | AGATACTAAAATGGATAAAG+GGG | + | chr6_3:98771618-98771637 | Msa0968410:intron | 25.0% |
!! | GTGTAACACCAATTTTTAAA+CGG | - | chr6_3:98771934-98771953 | None:intergenic | 25.0% |
! | TAGATCCATTGTAAACAAAT+TGG | + | chr6_3:98772015-98772034 | Msa0968410:intron | 25.0% |
!! | AACTACCAATTTGTTTACAA+TGG | - | chr6_3:98772023-98772042 | None:intergenic | 25.0% |
! | TTTAGCATGTCTTGAATTAA+GGG | - | chr6_3:98772140-98772159 | None:intergenic | 25.0% |
! | ATTTAGCATGTCTTGAATTA+AGG | - | chr6_3:98772141-98772160 | None:intergenic | 25.0% |
TTCCTTAACATCCTTTGTTA+TGG | + | chr6_3:98768652-98768671 | Msa0968410:CDS | 30.0% | |
CTAATTAGCAACAAAGTGTA+TGG | + | chr6_3:98768689-98768708 | Msa0968410:CDS | 30.0% | |
AATTAGCAACAAAGTGTATG+GGG | + | chr6_3:98768691-98768710 | Msa0968410:CDS | 30.0% | |
CATTATTGTCCTCACATAAT+AGG | - | chr6_3:98768820-98768839 | None:intergenic | 30.0% | |
TATGAATTTGAAGAACACCA+TGG | + | chr6_3:98768854-98768873 | Msa0968410:CDS | 30.0% | |
ATTGAAATCCAATAGTCGTA+TGG | - | chr6_3:98768918-98768937 | None:intergenic | 30.0% | |
TAAAGAATAATAAGGAGGGA+TGG | - | chr6_3:98768960-98768979 | None:intergenic | 30.0% | |
ATCCCTCCTTATTATTCTTT+AGG | + | chr6_3:98768959-98768978 | Msa0968410:CDS | 30.0% | |
TCCCTCCTTATTATTCTTTA+GGG | + | chr6_3:98768960-98768979 | Msa0968410:CDS | 30.0% | |
TAGAGCCCTAAAGAATAATA+AGG | - | chr6_3:98768968-98768987 | None:intergenic | 30.0% | |
TATCCATTAAAAGCTAGGTA+GGG | - | chr6_3:98769019-98769038 | None:intergenic | 30.0% | |
TTTCGTATCCATTAAAAGCT+AGG | - | chr6_3:98769024-98769043 | None:intergenic | 30.0% | |
TACGAGAATTCTTTCTATGT+TGG | + | chr6_3:98769154-98769173 | Msa0968410:CDS | 30.0% | |
! | CCAAATCTGAAAGAGATTTT+TGG | - | chr6_3:98769186-98769205 | None:intergenic | 30.0% |
CCAAAAATCTCTTTCAGATT+TGG | + | chr6_3:98769183-98769202 | Msa0968410:CDS | 30.0% | |
AATCTATGTATCTCACATCA+TGG | + | chr6_3:98769230-98769249 | Msa0968410:CDS | 30.0% | |
ATATTGTTTCCATCTTCAAG+AGG | - | chr6_3:98769256-98769275 | None:intergenic | 30.0% | |
CTCAATAGTCTTTGTAATGA+TGG | + | chr6_3:98769328-98769347 | Msa0968410:CDS | 30.0% | |
TAAAGTAAAGTGAGTGTTTG+GGG | - | chr6_3:98769409-98769428 | None:intergenic | 30.0% | |
GTAAAGTAAAGTGAGTGTTT+GGG | - | chr6_3:98769410-98769429 | None:intergenic | 30.0% | |
CAAACACTCACTTTACTTTA+CGG | + | chr6_3:98769409-98769428 | Msa0968410:intron | 30.0% | |
! | TTTTTGACAAGACACATCTA+TGG | + | chr6_3:98769582-98769601 | Msa0968410:intron | 30.0% |
TTCGGCAATTGAACTTATTT+GGG | - | chr6_3:98770273-98770292 | None:intergenic | 30.0% | |
TTTCGGCAATTGAACTTATT+TGG | - | chr6_3:98770274-98770293 | None:intergenic | 30.0% | |
CATAACCTATTTGTGTACAT+TGG | + | chr6_3:98770435-98770454 | Msa0968410:intron | 30.0% | |
! | CATATTAGTTTCTTTCATGC+GGG | - | chr6_3:98770895-98770914 | None:intergenic | 30.0% |
! | GCATATTAGTTTCTTTCATG+CGG | - | chr6_3:98770896-98770915 | None:intergenic | 30.0% |
TTTGTAAAATTTCACAGCAC+CGG | - | chr6_3:98770968-98770987 | None:intergenic | 30.0% | |
AATCAAGTGTAGTTGATTGA+TGG | - | chr6_3:98771075-98771094 | None:intergenic | 30.0% | |
GGAGATATTTGTTTGAGAAT+CGG | - | chr6_3:98771176-98771195 | None:intergenic | 30.0% | |
TGGCTTCCGAAATATATATT+TGG | - | chr6_3:98771214-98771233 | None:intergenic | 30.0% | |
AAATTCAGATCAACCAAAGA+GGG | - | chr6_3:98771242-98771261 | None:intergenic | 30.0% | |
AAAATTCAGATCAACCAAAG+AGG | - | chr6_3:98771243-98771262 | None:intergenic | 30.0% | |
! | AAATGCAACTTTTATCTCGT+GGG | + | chr6_3:98771717-98771736 | Msa0968410:intron | 30.0% |
GCAAGAACATACAAAAAAGA+TGG | - | chr6_3:98772058-98772077 | None:intergenic | 30.0% | |
CACCATAACAAAGGATGTTA+AGG | - | chr6_3:98768657-98768676 | None:intergenic | 35.0% | |
! | CTTAACATCCTTTGTTATGG+TGG | + | chr6_3:98768655-98768674 | Msa0968410:CDS | 35.0% |
AAGGTACAACCTATTATGTG+AGG | + | chr6_3:98768808-98768827 | Msa0968410:CDS | 35.0% | |
GCCCTAAAGAATAATAAGGA+GGG | - | chr6_3:98768964-98768983 | None:intergenic | 35.0% | |
AGCCCTAAAGAATAATAAGG+AGG | - | chr6_3:98768965-98768984 | None:intergenic | 35.0% | |
GTATCCATTAAAAGCTAGGT+AGG | - | chr6_3:98769020-98769039 | None:intergenic | 35.0% | |
TCGGAATATATTGATGAAGG+TGG | + | chr6_3:98769100-98769119 | Msa0968410:CDS | 35.0% | |
GAGAATTCTTTCTATGTTGG+TGG | + | chr6_3:98769157-98769176 | Msa0968410:CDS | 35.0% | |
CTGGATCTATACATAAATGC+TGG | - | chr6_3:98769381-98769400 | None:intergenic | 35.0% | |
CAGCATTTATGTATAGATCC+AGG | + | chr6_3:98769379-98769398 | Msa0968410:CDS | 35.0% | |
CGTAAAGTAAAGTGAGTGTT+TGG | - | chr6_3:98769411-98769430 | None:intergenic | 35.0% | |
! | GATACAAGAGTACAAGAAGT+GGG | + | chr6_3:98769728-98769747 | Msa0968410:intron | 35.0% |
AGAAGTGGGAAATACTTCTA+TGG | + | chr6_3:98769742-98769761 | Msa0968410:intron | 35.0% | |
ACACGCACACAACTTAAAAT+AGG | - | chr6_3:98769866-98769885 | None:intergenic | 35.0% | |
CAAGTAACTCCTTAAAGTCA+AGG | + | chr6_3:98769942-98769961 | Msa0968410:intron | 35.0% | |
! | TCTTTCTTTTACAGGTTTGC+AGG | - | chr6_3:98770000-98770019 | None:intergenic | 35.0% |
TCGGCAATTGAACTTATTTG+GGG | - | chr6_3:98770272-98770291 | None:intergenic | 35.0% | |
! | CTAGGAAAAATTTTACGCAG+GGG | - | chr6_3:98770854-98770873 | None:intergenic | 35.0% |
! | GCTAGGAAAAATTTTACGCA+GGG | - | chr6_3:98770855-98770874 | None:intergenic | 35.0% |
! | AGCTAGGAAAAATTTTACGC+AGG | - | chr6_3:98770856-98770875 | None:intergenic | 35.0% |
! | TTGAAAGTGTGATTCTAGTG+AGG | - | chr6_3:98770936-98770955 | None:intergenic | 35.0% |
ACACTTTCAAGACCAAAAAC+CGG | + | chr6_3:98770946-98770965 | Msa0968410:intron | 35.0% | |
! | ATTTGGAGTTTCATCATGCA+GGG | - | chr6_3:98771197-98771216 | None:intergenic | 35.0% |
! | TATTTGGAGTTTCATCATGC+AGG | - | chr6_3:98771198-98771217 | None:intergenic | 35.0% |
! | TTCTCAACACCTTCTAAGAA+GGG | + | chr6_3:98771305-98771324 | Msa0968410:intron | 35.0% |
!! | AAATCACTTGGTGTTTGCTT+GGG | - | chr6_3:98771349-98771368 | None:intergenic | 35.0% |
TTAATGTAGGGGAAATCACT+TGG | - | chr6_3:98771361-98771380 | None:intergenic | 35.0% | |
GTGCTTAAATTAATGCTAGC+AGG | + | chr6_3:98771399-98771418 | Msa0968410:intron | 35.0% | |
! | GAAATGCAACTTTTATCTCG+TGG | + | chr6_3:98771716-98771735 | Msa0968410:intron | 35.0% |
TTCCACATCCATATGTTAGA+GGG | + | chr6_3:98771834-98771853 | Msa0968410:intron | 35.0% | |
CTTGAATTAAGGGAATGTGA+GGG | - | chr6_3:98772130-98772149 | None:intergenic | 35.0% | |
TCTTGAATTAAGGGAATGTG+AGG | - | chr6_3:98772131-98772150 | None:intergenic | 35.0% | |
GAGTCATGTTCAAGAAAGTG+CGG | + | chr6_3:98768725-98768744 | Msa0968410:CDS | 40.0% | |
AAAGACAGTCCAGAAGAATG+TGG | + | chr6_3:98768779-98768798 | Msa0968410:CDS | 40.0% | |
! | CTTTTGTCACCACATTCTTC+TGG | - | chr6_3:98768791-98768810 | None:intergenic | 40.0% |
CAGAAGAATGTGGTGACAAA+AGG | + | chr6_3:98768789-98768808 | Msa0968410:CDS | 40.0% | |
CAACTTCACCATACGACTAT+TGG | + | chr6_3:98768907-98768926 | Msa0968410:CDS | 40.0% | |
ATTAAAAGCTAGGTAGGGTG+AGG | - | chr6_3:98769014-98769033 | None:intergenic | 40.0% | |
!! | TCACCCTACCTAGCTTTTAA+TGG | + | chr6_3:98769013-98769032 | Msa0968410:CDS | 40.0% |
TGTGAGCTGTAAAAATCGGT+CGG | + | chr6_3:98769081-98769100 | Msa0968410:CDS | 40.0% | |
CGGTCGGAATATATTGATGA+AGG | + | chr6_3:98769097-98769116 | Msa0968410:CDS | 40.0% | |
! | TCTCTTTCAGATTTGGGACT+TGG | + | chr6_3:98769190-98769209 | Msa0968410:CDS | 40.0% |
! | ATGCGTCGAATGGTGTTTTA+TGG | + | chr6_3:98769289-98769308 | Msa0968410:CDS | 40.0% |
AATCTTTATCACGTGCCCTA+GGG | - | chr6_3:98769483-98769502 | None:intergenic | 40.0% | |
! | CGATACAAGAGTACAAGAAG+TGG | + | chr6_3:98769727-98769746 | Msa0968410:intron | 40.0% |
TTTGGAAGCTTGTGAGCATT+GGG | - | chr6_3:98769972-98769991 | None:intergenic | 40.0% | |
!! | TATTGGTGTTGGTCTTGTGT+TGG | - | chr6_3:98770125-98770144 | None:intergenic | 40.0% |
ACAAGACCAACACCAATAGT+AGG | + | chr6_3:98770127-98770146 | Msa0968410:intron | 40.0% | |
!!! | TTTTGTTTTTGGGGTAGCCA+GGG | - | chr6_3:98770185-98770204 | None:intergenic | 40.0% |
!!! | TTTTTGTTTTTGGGGTAGCC+AGG | - | chr6_3:98770186-98770205 | None:intergenic | 40.0% |
!!! | AATTTCACAGCACCGGTTTT+TGG | - | chr6_3:98770961-98770980 | None:intergenic | 40.0% |
GGATGAGTTTGATGTAGCTT+TGG | - | chr6_3:98771155-98771174 | None:intergenic | 40.0% | |
ATCAACCAAAGAGGGTAAAG+TGG | - | chr6_3:98771234-98771253 | None:intergenic | 40.0% | |
!! | CTTCTTAGAAGGTGTTGAGA+AGG | - | chr6_3:98771306-98771325 | None:intergenic | 40.0% |
! | CTTCTCAACACCTTCTAAGA+AGG | + | chr6_3:98771304-98771323 | Msa0968410:intron | 40.0% |
! | TCTCAACACCTTCTAAGAAG+GGG | + | chr6_3:98771306-98771325 | Msa0968410:intron | 40.0% |
!! | AATCACTTGGTGTTTGCTTG+GGG | - | chr6_3:98771348-98771367 | None:intergenic | 40.0% |
!! | GAAATCACTTGGTGTTTGCT+TGG | - | chr6_3:98771350-98771369 | None:intergenic | 40.0% |
ATATTTGGGAGTGGTAGCTA+GGG | - | chr6_3:98771433-98771452 | None:intergenic | 40.0% | |
TATATTTGGGAGTGGTAGCT+AGG | - | chr6_3:98771434-98771453 | None:intergenic | 40.0% | |
AACATATGGATGTGGAAGAC+TGG | - | chr6_3:98771831-98771850 | None:intergenic | 40.0% | |
CTTCCACATCCATATGTTAG+AGG | + | chr6_3:98771833-98771852 | Msa0968410:intron | 40.0% | |
ACTCAAGAAGTGAGTGAGTA+CGG | + | chr6_3:98771980-98771999 | Msa0968410:intron | 40.0% | |
CACTACTGCCACCATAACAA+AGG | - | chr6_3:98768666-98768685 | None:intergenic | 45.0% | |
ATAACATCAGCCACCCTTTC+CGG | + | chr6_3:98768753-98768772 | Msa0968410:CDS | 45.0% | |
! | GACTGTCTTTTAGCCGGAAA+GGG | - | chr6_3:98768769-98768788 | None:intergenic | 45.0% |
! | CTTCTGGACTGTCTTTTAGC+CGG | - | chr6_3:98768775-98768794 | None:intergenic | 45.0% |
! | TCAGATTTGGGACTTGGAGA+CGG | + | chr6_3:98769196-98769215 | Msa0968410:CDS | 45.0% |
ACATCATGGCCTCTTGAAGA+TGG | + | chr6_3:98769244-98769263 | Msa0968410:CDS | 45.0% | |
TTCTACAGACATGCGTCGAA+TGG | + | chr6_3:98769279-98769298 | Msa0968410:CDS | 45.0% | |
GAATCTTTATCACGTGCCCT+AGG | - | chr6_3:98769484-98769503 | None:intergenic | 45.0% | |
! | TTGGGGCATCCTTGACTTTA+AGG | - | chr6_3:98769954-98769973 | None:intergenic | 45.0% |
! | TTGGAAGCTTGTGAGCATTG+GGG | - | chr6_3:98769971-98769990 | None:intergenic | 45.0% |
! | CTTTGGAAGCTTGTGAGCAT+TGG | - | chr6_3:98769973-98769992 | None:intergenic | 45.0% |
ACAGGTTTGCAGGTATGCTT+TGG | - | chr6_3:98769990-98770009 | None:intergenic | 45.0% | |
AAAAAAGACACGCCCTAACG+AGG | + | chr6_3:98770020-98770039 | Msa0968410:intron | 45.0% | |
GTTAATCGTCCTCCTCGTTA+GGG | - | chr6_3:98770035-98770054 | None:intergenic | 45.0% | |
AGTTAATCGTCCTCCTCGTT+AGG | - | chr6_3:98770036-98770055 | None:intergenic | 45.0% | |
!! | TTCTTTGGTTGGTTTGGTGC+TGG | - | chr6_3:98770059-98770078 | None:intergenic | 45.0% |
GCACCAAACCAACCAAAGAA+AGG | + | chr6_3:98770059-98770078 | Msa0968410:intron | 45.0% | |
! | TGGCCTTTCTTTGGTTGGTT+TGG | - | chr6_3:98770065-98770084 | None:intergenic | 45.0% |
ACCAACACCAATAGTAGGCA+GGG | + | chr6_3:98770132-98770151 | Msa0968410:intron | 45.0% | |
GCGTATCCTTTCAATGGGTA+GGG | + | chr6_3:98770155-98770174 | Msa0968410:intron | 45.0% | |
CGTATCCTTTCAATGGGTAG+GGG | + | chr6_3:98770156-98770175 | Msa0968410:intron | 45.0% | |
CTCATCATCCCCTTCTTAGA+AGG | - | chr6_3:98771317-98771336 | None:intergenic | 45.0% | |
TATGGATGTGGAAGACTGGT+GGG | - | chr6_3:98771827-98771846 | None:intergenic | 45.0% | |
ATATGGATGTGGAAGACTGG+TGG | - | chr6_3:98771828-98771847 | None:intergenic | 45.0% | |
CTCCCTCTAACATATGGATG+TGG | - | chr6_3:98771839-98771858 | None:intergenic | 45.0% | |
CTGACACTCCCTCTAACATA+TGG | - | chr6_3:98771845-98771864 | None:intergenic | 45.0% | |
ATGTTCTTGCAGATGACCAC+TGG | + | chr6_3:98772068-98772087 | Msa0968410:intron | 45.0% | |
TTACATATGAAAGCCGGGGA+AGG | - | chr6_3:98772106-98772125 | None:intergenic | 45.0% | |
AGGGCTTACATATGAAAGCC+GGG | - | chr6_3:98772111-98772130 | None:intergenic | 45.0% | |
GAGGGCTTACATATGAAAGC+CGG | - | chr6_3:98772112-98772131 | None:intergenic | 45.0% | |
!!! | CAAAATTTTAAAAAATAAAT+TGG | + | chr6_3:98769541-98769560 | Msa0968410:intron | 5.0% |
!!! | ATTAATTTTTTTTTTATAGT+TGG | + | chr6_3:98770828-98770847 | Msa0968410:intron | 5.0% |
!! | TTATTAAATTTATAGATAAA+AGG | - | chr6_3:98771677-98771696 | None:intergenic | 5.0% |
! | TGTCTTTTAGCCGGAAAGGG+TGG | - | chr6_3:98768766-98768785 | None:intergenic | 50.0% |
! | GGACTGTCTTTTAGCCGGAA+AGG | - | chr6_3:98768770-98768789 | None:intergenic | 50.0% |
! | CAGATTTGGGACTTGGAGAC+GGG | + | chr6_3:98769197-98769216 | Msa0968410:CDS | 50.0% |
! | ACTTGGAGACGGGTGTCATA+TGG | + | chr6_3:98769207-98769226 | Msa0968410:CDS | 50.0% |
ATGCTGATGACATGTGCCCT+AGG | + | chr6_3:98769464-98769483 | Msa0968410:intron | 50.0% | |
TGCTGATGACATGTGCCCTA+GGG | + | chr6_3:98769465-98769484 | Msa0968410:intron | 50.0% | |
AGGGATGGCCTTTCTTTGGT+TGG | - | chr6_3:98770070-98770089 | None:intergenic | 50.0% | |
GACCAACACCAATAGTAGGC+AGG | + | chr6_3:98770131-98770150 | Msa0968410:intron | 50.0% | |
CCAACACCAATAGTAGGCAG+GGG | + | chr6_3:98770133-98770152 | Msa0968410:intron | 50.0% | |
! | CAGGGGCGTATCCTTTCAAT+GGG | + | chr6_3:98770150-98770169 | Msa0968410:intron | 50.0% |
GGCGTATCCTTTCAATGGGT+AGG | + | chr6_3:98770154-98770173 | Msa0968410:intron | 50.0% | |
! | ATTTTTCCTAGCTTCGCCGC+TGG | + | chr6_3:98770863-98770882 | Msa0968410:intron | 50.0% |
GGGATGTGTGGCTTAAGTGT+TGG | - | chr6_3:98771107-98771126 | None:intergenic | 50.0% | |
CTTAAGCCACACATCCCTCT+AGG | + | chr6_3:98771110-98771129 | Msa0968410:intron | 50.0% | |
!! | GATGTAGCTTTGGTCCCTAC+CGG | - | chr6_3:98771145-98771164 | None:intergenic | 50.0% |
! | GGAAGCCACTTTACCCTCTT+TGG | + | chr6_3:98771226-98771245 | Msa0968410:intron | 50.0% |
ATGTGGAAGACTGGTGGGAA+AGG | - | chr6_3:98771822-98771841 | None:intergenic | 50.0% | |
AAGGTAGGGCAAAAAGCCAG+TGG | - | chr6_3:98772087-98772106 | None:intergenic | 50.0% | |
TATGAAAGCCGGGGAAGGTA+GGG | - | chr6_3:98772101-98772120 | None:intergenic | 50.0% | |
ATATGAAAGCCGGGGAAGGT+AGG | - | chr6_3:98772102-98772121 | None:intergenic | 50.0% | |
GGGCTTACATATGAAAGCCG+GGG | - | chr6_3:98772110-98772129 | None:intergenic | 50.0% | |
! | GTGAGTGTTTGGGGCAAACC+TGG | - | chr6_3:98769400-98769419 | None:intergenic | 55.0% |
AAAGACACGCCCTAACGAGG+AGG | + | chr6_3:98770023-98770042 | Msa0968410:intron | 55.0% | |
GTGCAGGGATGGCCTTTCTT+TGG | - | chr6_3:98770074-98770093 | None:intergenic | 55.0% | |
AGCCGACATCGTTGGGTGAT+GGG | - | chr6_3:98770102-98770121 | None:intergenic | 55.0% | |
GTGTTGGAGCCGACATCGTT+GGG | - | chr6_3:98770109-98770128 | None:intergenic | 55.0% | |
TGTGTTGGAGCCGACATCGT+TGG | - | chr6_3:98770110-98770129 | None:intergenic | 55.0% | |
CCCCTGCCTACTATTGGTGT+TGG | - | chr6_3:98770136-98770155 | None:intergenic | 55.0% | |
GATACGCCCCTGCCTACTAT+TGG | - | chr6_3:98770142-98770161 | None:intergenic | 55.0% | |
! | GCAGGGGCGTATCCTTTCAA+TGG | + | chr6_3:98770149-98770168 | Msa0968410:intron | 55.0% |
GGCTACCCCTACCCATTGAA+AGG | - | chr6_3:98770164-98770183 | None:intergenic | 55.0% | |
GTGCTTCCTAGAGGGATGTG+TGG | - | chr6_3:98771119-98771138 | None:intergenic | 55.0% | |
! | TCCCTCTAGGAAGCACGAAC+CGG | + | chr6_3:98771123-98771142 | Msa0968410:intron | 55.0% |
!! | ACCGGTTCGTGCTTCCTAGA+GGG | - | chr6_3:98771127-98771146 | None:intergenic | 55.0% |
!! | TACCGGTTCGTGCTTCCTAG+AGG | - | chr6_3:98771128-98771147 | None:intergenic | 55.0% |
! | TCTAGGAAGCACGAACCGGT+AGG | + | chr6_3:98771127-98771146 | Msa0968410:intron | 55.0% |
! | CTAGGAAGCACGAACCGGTA+GGG | + | chr6_3:98771128-98771147 | Msa0968410:intron | 55.0% |
! | GCTTTTTGCCCTACCTTCCC+CGG | + | chr6_3:98772090-98772109 | Msa0968410:CDS | 55.0% |
!! | CGACATCGTTGGGTGATGGG+GGG | - | chr6_3:98770099-98770118 | None:intergenic | 60.0% |
! | CCGACATCGTTGGGTGATGG+GGG | - | chr6_3:98770100-98770119 | None:intergenic | 60.0% |
CCCCCATCACCCAACGATGT+CGG | + | chr6_3:98770097-98770116 | Msa0968410:intron | 60.0% | |
GCCGACATCGTTGGGTGATG+GGG | - | chr6_3:98770101-98770120 | None:intergenic | 60.0% | |
GAGCCGACATCGTTGGGTGA+TGG | - | chr6_3:98770103-98770122 | None:intergenic | 60.0% | |
TCAATGGGTAGGGGTAGCCC+TGG | + | chr6_3:98770165-98770184 | Msa0968410:intron | 60.0% | |
! | TTCATGCGGGTTGTCGCCAG+CGG | - | chr6_3:98770882-98770901 | None:intergenic | 60.0% |
GATGGGGGGTAGTGCAGGGA+TGG | - | chr6_3:98770085-98770104 | None:intergenic | 65.0% | |
!! | GGGTGATGGGGGGTAGTGCA+GGG | - | chr6_3:98770089-98770108 | None:intergenic | 65.0% |
!! | TGGGTGATGGGGGGTAGTGC+AGG | - | chr6_3:98770090-98770109 | None:intergenic | 65.0% |
TTGTCGCCAGCGGCGAAGCT+AGG | - | chr6_3:98770872-98770891 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 98768647 | 98772162 | 98768647 | ID=Msa0968410;Name=Msa0968410 |
chr6_3 | mRNA | 98768647 | 98772162 | 98768647 | ID=Msa0968410-mRNA-1;Parent=Msa0968410;Name=Msa0968410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0|1|1|1|2|0|278 |
chr6_3 | exon | 98768647 | 98769400 | 98768647 | ID=Msa0968410-mRNA-1:exon:18576;Parent=Msa0968410-mRNA-1 |
chr6_3 | exon | 98772080 | 98772162 | 98772080 | ID=Msa0968410-mRNA-1:exon:18577;Parent=Msa0968410-mRNA-1 |
chr6_3 | CDS | 98768647 | 98769400 | 98768647 | ID=Msa0968410-mRNA-1:cds;Parent=Msa0968410-mRNA-1 |
chr6_3 | CDS | 98772080 | 98772162 | 98772080 | ID=Msa0968410-mRNA-1:cds;Parent=Msa0968410-mRNA-1 |
Gene Sequence |
Protein sequence |