AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968410 MtrunA17_Chr1g0160711 71.875 256 62 6 4 255 2 251 2.34e-116 347
Msa0968410 MtrunA17_Chr1g0160761 66.148 257 74 4 1 248 1 253 4.99e-104 316
Msa0968410 MtrunA17_Chr1g0160661 62.451 253 82 5 1 251 27 268 6.71e-95 288
Msa0968410 MtrunA17_Chr1g0160721 57.529 259 97 5 1 257 12 259 1.52e-84 266
Msa0968410 MtrunA17_Chr1g0160561 51.908 262 105 7 3 250 7 261 4.72e-77 246
Msa0968410 MtrunA17_Chr1g0160701 56.627 249 86 11 18 255 33 270 1.51e-71 232
Msa0968410 MtrunA17_Chr1g0158061 35.514 214 117 8 33 234 35 239 7.75e-30 114
Msa0968410 MtrunA17_Chr1g0158151 36.327 245 124 12 25 247 27 261 9.90e-29 115
Msa0968410 MtrunA17_Chr1g0157961 35.714 224 123 8 24 234 33 248 1.09e-28 111
Msa0968410 MtrunA17_Chr1g0157791 35.270 241 128 10 24 247 28 257 3.09e-28 113
Msa0968410 MtrunA17_Chr1g0157991 35.526 228 122 8 24 234 28 247 8.37e-28 112
Msa0968410 MtrunA17_Chr3g0088331 34.167 240 121 11 23 247 36 253 1.06e-26 105
Msa0968410 MtrunA17_Chr1g0158411 32.283 254 134 9 2 234 15 251 2.10e-26 108
Msa0968410 MtrunA17_Chr1g0158191 35.021 237 111 12 24 233 24 244 9.63e-26 106
Msa0968410 MtrunA17_Chr1g0158461 31.227 269 140 12 1 234 16 274 7.70e-25 101
Msa0968410 MtrunA17_Chr1g0157881 30.916 262 109 11 33 234 60 309 1.02e-23 100
Msa0968410 MtrunA17_Chr1g0158041 33.790 219 119 7 33 234 36 245 2.25e-23 99.8
Msa0968410 MtrunA17_Chr6g0467711 35.160 219 106 9 33 234 48 247 2.92e-23 99.4
Msa0968410 MtrunA17_Chr1g0158761 30.672 238 126 10 8 234 9 218 1.10e-21 94.7
Msa0968410 MtrunA17_Chr1g0158661 28.409 264 151 9 13 257 23 267 1.49e-21 94.4
Msa0968410 MtrunA17_Chr1g0158631 29.496 278 145 10 5 251 11 268 2.44e-20 90.5
Msa0968410 MtrunA17_Chr1g0158731 29.688 256 143 8 1 234 1 241 4.88e-20 87.8
Msa0968410 MtrunA17_Chr1g0158541 31.707 246 141 10 5 234 16 250 9.32e-20 89.0
Msa0968410 MtrunA17_Chr1g0157861 27.365 296 128 13 33 269 45 312 2.58e-19 87.8
Msa0968410 MtrunA17_Chr1g0158331 30.075 266 140 12 1 234 16 267 2.99e-19 85.9
Msa0968410 MtrunA17_Chr1g0157911 30.631 222 121 9 33 234 42 250 1.69e-18 85.1
Msa0968410 MtrunA17_Chr1g0158301 28.512 242 143 10 8 234 22 248 4.76e-15 75.1
Msa0968410 MtrunA17_Chr1g0158121 45.263 95 45 3 24 116 29 118 9.87e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 53 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCTCCTTATTATTCTTT+AGG 0.151819 6_3:+98768959 Msa0968410:CDS
ATTTAGCATGTCTTGAATTA+AGG 0.180260 6_3:-98772138 None:intergenic
TCCCTCCTTATTATTCTTTA+GGG 0.210688 6_3:+98768960 Msa0968410:CDS
CATTATTGTCCTCACATAAT+AGG 0.236387 6_3:-98768817 None:intergenic
CAACTTCACCATACGACTAT+TGG 0.252740 6_3:+98768907 Msa0968410:CDS
TTCCTTAACATCCTTTGTTA+TGG 0.276218 6_3:+98768652 Msa0968410:CDS
ATAACATCAGCCACCCTTTC+CGG 0.297512 6_3:+98768753 Msa0968410:CDS
TTTATGGATTTGAACTTTCA+TGG 0.314825 6_3:+98769305 Msa0968410:CDS
CTCAATAGTCTTTGTAATGA+TGG 0.335428 6_3:+98769328 Msa0968410:CDS
TAGAGCCCTAAAGAATAATA+AGG 0.353798 6_3:-98768965 None:intergenic
TCTCTTTCAGATTTGGGACT+TGG 0.355277 6_3:+98769190 Msa0968410:CDS
TTTAGCATGTCTTGAATTAA+GGG 0.366212 6_3:-98772137 None:intergenic
CACCATAACAAAGGATGTTA+AGG 0.392467 6_3:-98768654 None:intergenic
CTAATTAGCAACAAAGTGTA+TGG 0.423091 6_3:+98768689 Msa0968410:CDS
CAGATTTGGGACTTGGAGAC+GGG 0.442912 6_3:+98769197 Msa0968410:CDS
ACTTGGAGACGGGTGTCATA+TGG 0.443107 6_3:+98769207 Msa0968410:CDS
CAGCATTTATGTATAGATCC+AGG 0.447944 6_3:+98769379 Msa0968410:CDS
TTTCGTATCCATTAAAAGCT+AGG 0.462412 6_3:-98769021 None:intergenic
CTTAACATCCTTTGTTATGG+TGG 0.464676 6_3:+98768655 Msa0968410:CDS
ACATCATGGCCTCTTGAAGA+TGG 0.468797 6_3:+98769244 Msa0968410:CDS
GAGAATTCTTTCTATGTTGG+TGG 0.469005 6_3:+98769157 Msa0968410:CDS
TACGAGAATTCTTTCTATGT+TGG 0.482804 6_3:+98769154 Msa0968410:CDS
TCAGATTTGGGACTTGGAGA+CGG 0.489585 6_3:+98769196 Msa0968410:CDS
CAGAAGAATGTGGTGACAAA+AGG 0.492801 6_3:+98768789 Msa0968410:CDS
ATGTTCTTGCAGATGACCAC+TGG 0.505032 6_3:+98772068 Msa0968410:intron
AGGGCTTACATATGAAAGCC+GGG 0.509438 6_3:-98772108 None:intergenic
TATGAAAGCCGGGGAAGGTA+GGG 0.509508 6_3:-98772098 None:intergenic
ATATGAAAGCCGGGGAAGGT+AGG 0.518798 6_3:-98772099 None:intergenic
GTATCCATTAAAAGCTAGGT+AGG 0.522243 6_3:-98769017 None:intergenic
CGGTCGGAATATATTGATGA+AGG 0.526826 6_3:+98769097 Msa0968410:CDS
CTGGATCTATACATAAATGC+TGG 0.539585 6_3:-98769378 None:intergenic
TTCTACAGACATGCGTCGAA+TGG 0.543277 6_3:+98769279 Msa0968410:CDS
GAGGGCTTACATATGAAAGC+CGG 0.545576 6_3:-98772109 None:intergenic
TAAAGAATAATAAGGAGGGA+TGG 0.555369 6_3:-98768957 None:intergenic
TAATTAGCAACAAAGTGTAT+GGG 0.560784 6_3:+98768690 Msa0968410:CDS
ATTGAAATCCAATAGTCGTA+TGG 0.568248 6_3:-98768915 None:intergenic
AATCTATGTATCTCACATCA+TGG 0.571651 6_3:+98769230 Msa0968410:CDS
GCCCTAAAGAATAATAAGGA+GGG 0.574069 6_3:-98768961 None:intergenic
ATATTGTTTCCATCTTCAAG+AGG 0.599725 6_3:-98769253 None:intergenic
ATTAAAAGCTAGGTAGGGTG+AGG 0.606952 6_3:-98769011 None:intergenic
TCTTGAATTAAGGGAATGTG+AGG 0.610701 6_3:-98772128 None:intergenic
TTACATATGAAAGCCGGGGA+AGG 0.620719 6_3:-98772103 None:intergenic
AGCCCTAAAGAATAATAAGG+AGG 0.622034 6_3:-98768962 None:intergenic
TATCCATTAAAAGCTAGGTA+GGG 0.625375 6_3:-98769016 None:intergenic
AATTAGCAACAAAGTGTATG+GGG 0.626387 6_3:+98768691 Msa0968410:CDS
CACTACTGCCACCATAACAA+AGG 0.635961 6_3:-98768663 None:intergenic
TCGGAATATATTGATGAAGG+TGG 0.639500 6_3:+98769100 Msa0968410:CDS
CTTGAATTAAGGGAATGTGA+GGG 0.664266 6_3:-98772127 None:intergenic
GAGTCATGTTCAAGAAAGTG+CGG 0.671036 6_3:+98768725 Msa0968410:CDS
TATGAATTTGAAGAACACCA+TGG 0.674399 6_3:+98768854 Msa0968410:CDS
AAGGTACAACCTATTATGTG+AGG 0.675468 6_3:+98768808 Msa0968410:CDS
AAAGACAGTCCAGAAGAATG+TGG 0.689791 6_3:+98768779 Msa0968410:CDS
GGGCTTACATATGAAAGCCG+GGG 0.696923 6_3:-98772107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATTTTTATATTA+TGG + chr6_3:98769438-98769457 Msa0968410:intron 0.0%
!!! TTTTTTTATTTTTATATTAT+GGG + chr6_3:98769439-98769458 Msa0968410:intron 0.0%
!!! TTTTTTTTTTTTTTTTGTGA+TGG - chr6_3:98769676-98769695 None:intergenic 10.0%
!!! AATAATAATTTTTGTTTTTG+GGG - chr6_3:98770194-98770213 None:intergenic 10.0%
!!! CAATAATAATTTTTGTTTTT+GGG - chr6_3:98770195-98770214 None:intergenic 10.0%
!!! ACAATAATAATTTTTGTTTT+TGG - chr6_3:98770196-98770215 None:intergenic 10.0%
!!! AAATTATAATTTTTTAGGTT+TGG - chr6_3:98770760-98770779 None:intergenic 10.0%
!!! CCTATAAATTATAATTTTTT+AGG - chr6_3:98770765-98770784 None:intergenic 10.0%
!! CCTAAAAAATTATAATTTAT+AGG + chr6_3:98770762-98770781 Msa0968410:intron 10.0%
!!! TATCTTTAAAATTAATATGT+TGG + chr6_3:98770800-98770819 Msa0968410:intron 10.0%
!! AAAAATACGTATTATTCAAT+TGG + chr6_3:98769829-98769848 Msa0968410:intron 15.0%
!! TTCCAAATAAATTATATTTG+AGG + chr6_3:98769886-98769905 Msa0968410:intron 15.0%
!! TACCTCAAATATAATTTATT+TGG - chr6_3:98769891-98769910 None:intergenic 15.0%
!! AAAATTATTATTGTAGTAGT+TGG + chr6_3:98770202-98770221 Msa0968410:intron 15.0%
!!! TTCTTATTTATGCTAATTTT+CGG - chr6_3:98770291-98770310 None:intergenic 15.0%
!! ATTGATAGATTTATTTGTAT+TGG + chr6_3:98770330-98770349 Msa0968410:intron 15.0%
!!! ATTTTGTAAATAGTGATTTA+TGG + chr6_3:98770476-98770495 Msa0968410:intron 15.0%
!!! ATTGAATAAATTTGTTTGTA+AGG + chr6_3:98770733-98770752 Msa0968410:intron 15.0%
!! GTAAATAAGAGAAAAATTAA+GGG - chr6_3:98771792-98771811 None:intergenic 15.0%
!! TGTAAATAAGAGAAAAATTA+AGG - chr6_3:98771793-98771812 None:intergenic 15.0%
!!! ATTGTACATAATATTTTCCA+TGG - chr6_3:98768874-98768893 None:intergenic 20.0%
!!! AGTTACTTGTTTTTTTTTCT+GGG - chr6_3:98769931-98769950 None:intergenic 20.0%
!!! TCTTTTTTTCTTTCTTTTAC+AGG - chr6_3:98770008-98770027 None:intergenic 20.0%
!! AGCTCAATATTTATTAATTG+AGG - chr6_3:98770248-98770267 None:intergenic 20.0%
!!! TAGATTTATTTGTATTGGTT+TGG + chr6_3:98770335-98770354 Msa0968410:intron 20.0%
!! TAGTGATTTATGGATAAAAT+TGG + chr6_3:98770486-98770505 Msa0968410:intron 20.0%
!! CAATAGCTATTTAAAAAAGT+TGG - chr6_3:98770532-98770551 None:intergenic 20.0%
!!! AAAAAAAGTGTTTTTAGTCT+TGG - chr6_3:98770683-98770702 None:intergenic 20.0%
!!! TCATGTTTTTAAGGTATTTT+AGG - chr6_3:98771038-98771057 None:intergenic 20.0%
!! CTTAAAAACATGATATATGA+CGG + chr6_3:98771045-98771064 Msa0968410:intron 20.0%
!! GAAACTCCAAATATATATTT+CGG + chr6_3:98771205-98771224 Msa0968410:intron 20.0%
!! ATTTGTATTGTGTTAATGTA+GGG - chr6_3:98771373-98771392 None:intergenic 20.0%
!! AATTTGTATTGTGTTAATGT+AGG - chr6_3:98771374-98771393 None:intergenic 20.0%
!! TACATTAACACAATACAAAT+TGG + chr6_3:98771373-98771392 Msa0968410:intron 20.0%
!!! GACCATGTATTTTTATATTT+GGG - chr6_3:98771447-98771466 None:intergenic 20.0%
!!! TGACCATGTATTTTTATATT+TGG - chr6_3:98771448-98771467 None:intergenic 20.0%
!!! AGTATCTAGTTTAGTAATTT+TGG - chr6_3:98771605-98771624 None:intergenic 20.0%
!! TACTAAACTAGATACTAAAA+TGG + chr6_3:98771609-98771628 Msa0968410:intron 20.0%
!! TAGATACTAAAATGGATAAA+GGG + chr6_3:98771617-98771636 Msa0968410:intron 20.0%
!!! TTCTTTTACCGTTTAAAAAT+TGG + chr6_3:98771923-98771942 Msa0968410:intron 20.0%
! TAATTAGCAACAAAGTGTAT+GGG + chr6_3:98768690-98768709 Msa0968410:CDS 25.0%
! TATATGTGAGCTGTAAAAAT+CGG + chr6_3:98769077-98769096 Msa0968410:CDS 25.0%
! CAAAAATCTCTTTCAGATTT+GGG + chr6_3:98769184-98769203 Msa0968410:CDS 25.0%
! TTTATGGATTTGAACTTTCA+TGG + chr6_3:98769305-98769324 Msa0968410:CDS 25.0%
!!! TTGTCAAAATGGTCTTATTT+AGG - chr6_3:98769775-98769794 None:intergenic 25.0%
! GTTATGTATGTTTGTCAAAA+TGG - chr6_3:98769786-98769805 None:intergenic 25.0%
!!! GAGTTACTTGTTTTTTTTTC+TGG - chr6_3:98769932-98769951 None:intergenic 25.0%
! TATTTATTAATTGAGGTAGC+TGG - chr6_3:98770241-98770260 None:intergenic 25.0%
!! ATTTTCCAATGTACACAAAT+AGG - chr6_3:98770443-98770462 None:intergenic 25.0%
!! CTTAGTTAATTTTCATGCAT+TGG + chr6_3:98770577-98770596 Msa0968410:intron 25.0%
!!! TTCATGCATTGGTTAATTTT+TGG + chr6_3:98770588-98770607 Msa0968410:intron 25.0%
!!! CGTCATATATCATGTTTTTA+AGG - chr6_3:98771047-98771066 None:intergenic 25.0%
!!! CTTGTAATGCTGTTTTTATT+TGG - chr6_3:98771280-98771299 None:intergenic 25.0%
! TTTGTATTGTGTTAATGTAG+GGG - chr6_3:98771372-98771391 None:intergenic 25.0%
!!! TGTATTTTTATATTTGGGAG+TGG - chr6_3:98771442-98771461 None:intergenic 25.0%
! CTCCCAAATATAAAAATACA+TGG + chr6_3:98771442-98771461 Msa0968410:intron 25.0%
! CTAGATACTAAAATGGATAA+AGG + chr6_3:98771616-98771635 Msa0968410:intron 25.0%
! AGATACTAAAATGGATAAAG+GGG + chr6_3:98771618-98771637 Msa0968410:intron 25.0%
!! GTGTAACACCAATTTTTAAA+CGG - chr6_3:98771934-98771953 None:intergenic 25.0%
! TAGATCCATTGTAAACAAAT+TGG + chr6_3:98772015-98772034 Msa0968410:intron 25.0%
!! AACTACCAATTTGTTTACAA+TGG - chr6_3:98772023-98772042 None:intergenic 25.0%
! TTTAGCATGTCTTGAATTAA+GGG - chr6_3:98772140-98772159 None:intergenic 25.0%
! ATTTAGCATGTCTTGAATTA+AGG - chr6_3:98772141-98772160 None:intergenic 25.0%
TTCCTTAACATCCTTTGTTA+TGG + chr6_3:98768652-98768671 Msa0968410:CDS 30.0%
CTAATTAGCAACAAAGTGTA+TGG + chr6_3:98768689-98768708 Msa0968410:CDS 30.0%
AATTAGCAACAAAGTGTATG+GGG + chr6_3:98768691-98768710 Msa0968410:CDS 30.0%
CATTATTGTCCTCACATAAT+AGG - chr6_3:98768820-98768839 None:intergenic 30.0%
TATGAATTTGAAGAACACCA+TGG + chr6_3:98768854-98768873 Msa0968410:CDS 30.0%
ATTGAAATCCAATAGTCGTA+TGG - chr6_3:98768918-98768937 None:intergenic 30.0%
TAAAGAATAATAAGGAGGGA+TGG - chr6_3:98768960-98768979 None:intergenic 30.0%
ATCCCTCCTTATTATTCTTT+AGG + chr6_3:98768959-98768978 Msa0968410:CDS 30.0%
TCCCTCCTTATTATTCTTTA+GGG + chr6_3:98768960-98768979 Msa0968410:CDS 30.0%
TAGAGCCCTAAAGAATAATA+AGG - chr6_3:98768968-98768987 None:intergenic 30.0%
TATCCATTAAAAGCTAGGTA+GGG - chr6_3:98769019-98769038 None:intergenic 30.0%
TTTCGTATCCATTAAAAGCT+AGG - chr6_3:98769024-98769043 None:intergenic 30.0%
TACGAGAATTCTTTCTATGT+TGG + chr6_3:98769154-98769173 Msa0968410:CDS 30.0%
! CCAAATCTGAAAGAGATTTT+TGG - chr6_3:98769186-98769205 None:intergenic 30.0%
CCAAAAATCTCTTTCAGATT+TGG + chr6_3:98769183-98769202 Msa0968410:CDS 30.0%
AATCTATGTATCTCACATCA+TGG + chr6_3:98769230-98769249 Msa0968410:CDS 30.0%
ATATTGTTTCCATCTTCAAG+AGG - chr6_3:98769256-98769275 None:intergenic 30.0%
CTCAATAGTCTTTGTAATGA+TGG + chr6_3:98769328-98769347 Msa0968410:CDS 30.0%
TAAAGTAAAGTGAGTGTTTG+GGG - chr6_3:98769409-98769428 None:intergenic 30.0%
GTAAAGTAAAGTGAGTGTTT+GGG - chr6_3:98769410-98769429 None:intergenic 30.0%
CAAACACTCACTTTACTTTA+CGG + chr6_3:98769409-98769428 Msa0968410:intron 30.0%
! TTTTTGACAAGACACATCTA+TGG + chr6_3:98769582-98769601 Msa0968410:intron 30.0%
TTCGGCAATTGAACTTATTT+GGG - chr6_3:98770273-98770292 None:intergenic 30.0%
TTTCGGCAATTGAACTTATT+TGG - chr6_3:98770274-98770293 None:intergenic 30.0%
CATAACCTATTTGTGTACAT+TGG + chr6_3:98770435-98770454 Msa0968410:intron 30.0%
! CATATTAGTTTCTTTCATGC+GGG - chr6_3:98770895-98770914 None:intergenic 30.0%
! GCATATTAGTTTCTTTCATG+CGG - chr6_3:98770896-98770915 None:intergenic 30.0%
TTTGTAAAATTTCACAGCAC+CGG - chr6_3:98770968-98770987 None:intergenic 30.0%
AATCAAGTGTAGTTGATTGA+TGG - chr6_3:98771075-98771094 None:intergenic 30.0%
GGAGATATTTGTTTGAGAAT+CGG - chr6_3:98771176-98771195 None:intergenic 30.0%
TGGCTTCCGAAATATATATT+TGG - chr6_3:98771214-98771233 None:intergenic 30.0%
AAATTCAGATCAACCAAAGA+GGG - chr6_3:98771242-98771261 None:intergenic 30.0%
AAAATTCAGATCAACCAAAG+AGG - chr6_3:98771243-98771262 None:intergenic 30.0%
! AAATGCAACTTTTATCTCGT+GGG + chr6_3:98771717-98771736 Msa0968410:intron 30.0%
GCAAGAACATACAAAAAAGA+TGG - chr6_3:98772058-98772077 None:intergenic 30.0%
CACCATAACAAAGGATGTTA+AGG - chr6_3:98768657-98768676 None:intergenic 35.0%
! CTTAACATCCTTTGTTATGG+TGG + chr6_3:98768655-98768674 Msa0968410:CDS 35.0%
AAGGTACAACCTATTATGTG+AGG + chr6_3:98768808-98768827 Msa0968410:CDS 35.0%
GCCCTAAAGAATAATAAGGA+GGG - chr6_3:98768964-98768983 None:intergenic 35.0%
AGCCCTAAAGAATAATAAGG+AGG - chr6_3:98768965-98768984 None:intergenic 35.0%
GTATCCATTAAAAGCTAGGT+AGG - chr6_3:98769020-98769039 None:intergenic 35.0%
TCGGAATATATTGATGAAGG+TGG + chr6_3:98769100-98769119 Msa0968410:CDS 35.0%
GAGAATTCTTTCTATGTTGG+TGG + chr6_3:98769157-98769176 Msa0968410:CDS 35.0%
CTGGATCTATACATAAATGC+TGG - chr6_3:98769381-98769400 None:intergenic 35.0%
CAGCATTTATGTATAGATCC+AGG + chr6_3:98769379-98769398 Msa0968410:CDS 35.0%
CGTAAAGTAAAGTGAGTGTT+TGG - chr6_3:98769411-98769430 None:intergenic 35.0%
! GATACAAGAGTACAAGAAGT+GGG + chr6_3:98769728-98769747 Msa0968410:intron 35.0%
AGAAGTGGGAAATACTTCTA+TGG + chr6_3:98769742-98769761 Msa0968410:intron 35.0%
ACACGCACACAACTTAAAAT+AGG - chr6_3:98769866-98769885 None:intergenic 35.0%
CAAGTAACTCCTTAAAGTCA+AGG + chr6_3:98769942-98769961 Msa0968410:intron 35.0%
! TCTTTCTTTTACAGGTTTGC+AGG - chr6_3:98770000-98770019 None:intergenic 35.0%
TCGGCAATTGAACTTATTTG+GGG - chr6_3:98770272-98770291 None:intergenic 35.0%
! CTAGGAAAAATTTTACGCAG+GGG - chr6_3:98770854-98770873 None:intergenic 35.0%
! GCTAGGAAAAATTTTACGCA+GGG - chr6_3:98770855-98770874 None:intergenic 35.0%
! AGCTAGGAAAAATTTTACGC+AGG - chr6_3:98770856-98770875 None:intergenic 35.0%
! TTGAAAGTGTGATTCTAGTG+AGG - chr6_3:98770936-98770955 None:intergenic 35.0%
ACACTTTCAAGACCAAAAAC+CGG + chr6_3:98770946-98770965 Msa0968410:intron 35.0%
! ATTTGGAGTTTCATCATGCA+GGG - chr6_3:98771197-98771216 None:intergenic 35.0%
! TATTTGGAGTTTCATCATGC+AGG - chr6_3:98771198-98771217 None:intergenic 35.0%
! TTCTCAACACCTTCTAAGAA+GGG + chr6_3:98771305-98771324 Msa0968410:intron 35.0%
!! AAATCACTTGGTGTTTGCTT+GGG - chr6_3:98771349-98771368 None:intergenic 35.0%
TTAATGTAGGGGAAATCACT+TGG - chr6_3:98771361-98771380 None:intergenic 35.0%
GTGCTTAAATTAATGCTAGC+AGG + chr6_3:98771399-98771418 Msa0968410:intron 35.0%
! GAAATGCAACTTTTATCTCG+TGG + chr6_3:98771716-98771735 Msa0968410:intron 35.0%
TTCCACATCCATATGTTAGA+GGG + chr6_3:98771834-98771853 Msa0968410:intron 35.0%
CTTGAATTAAGGGAATGTGA+GGG - chr6_3:98772130-98772149 None:intergenic 35.0%
TCTTGAATTAAGGGAATGTG+AGG - chr6_3:98772131-98772150 None:intergenic 35.0%
GAGTCATGTTCAAGAAAGTG+CGG + chr6_3:98768725-98768744 Msa0968410:CDS 40.0%
AAAGACAGTCCAGAAGAATG+TGG + chr6_3:98768779-98768798 Msa0968410:CDS 40.0%
! CTTTTGTCACCACATTCTTC+TGG - chr6_3:98768791-98768810 None:intergenic 40.0%
CAGAAGAATGTGGTGACAAA+AGG + chr6_3:98768789-98768808 Msa0968410:CDS 40.0%
CAACTTCACCATACGACTAT+TGG + chr6_3:98768907-98768926 Msa0968410:CDS 40.0%
ATTAAAAGCTAGGTAGGGTG+AGG - chr6_3:98769014-98769033 None:intergenic 40.0%
!! TCACCCTACCTAGCTTTTAA+TGG + chr6_3:98769013-98769032 Msa0968410:CDS 40.0%
TGTGAGCTGTAAAAATCGGT+CGG + chr6_3:98769081-98769100 Msa0968410:CDS 40.0%
CGGTCGGAATATATTGATGA+AGG + chr6_3:98769097-98769116 Msa0968410:CDS 40.0%
! TCTCTTTCAGATTTGGGACT+TGG + chr6_3:98769190-98769209 Msa0968410:CDS 40.0%
! ATGCGTCGAATGGTGTTTTA+TGG + chr6_3:98769289-98769308 Msa0968410:CDS 40.0%
AATCTTTATCACGTGCCCTA+GGG - chr6_3:98769483-98769502 None:intergenic 40.0%
! CGATACAAGAGTACAAGAAG+TGG + chr6_3:98769727-98769746 Msa0968410:intron 40.0%
TTTGGAAGCTTGTGAGCATT+GGG - chr6_3:98769972-98769991 None:intergenic 40.0%
!! TATTGGTGTTGGTCTTGTGT+TGG - chr6_3:98770125-98770144 None:intergenic 40.0%
ACAAGACCAACACCAATAGT+AGG + chr6_3:98770127-98770146 Msa0968410:intron 40.0%
!!! TTTTGTTTTTGGGGTAGCCA+GGG - chr6_3:98770185-98770204 None:intergenic 40.0%
!!! TTTTTGTTTTTGGGGTAGCC+AGG - chr6_3:98770186-98770205 None:intergenic 40.0%
!!! AATTTCACAGCACCGGTTTT+TGG - chr6_3:98770961-98770980 None:intergenic 40.0%
GGATGAGTTTGATGTAGCTT+TGG - chr6_3:98771155-98771174 None:intergenic 40.0%
ATCAACCAAAGAGGGTAAAG+TGG - chr6_3:98771234-98771253 None:intergenic 40.0%
!! CTTCTTAGAAGGTGTTGAGA+AGG - chr6_3:98771306-98771325 None:intergenic 40.0%
! CTTCTCAACACCTTCTAAGA+AGG + chr6_3:98771304-98771323 Msa0968410:intron 40.0%
! TCTCAACACCTTCTAAGAAG+GGG + chr6_3:98771306-98771325 Msa0968410:intron 40.0%
!! AATCACTTGGTGTTTGCTTG+GGG - chr6_3:98771348-98771367 None:intergenic 40.0%
!! GAAATCACTTGGTGTTTGCT+TGG - chr6_3:98771350-98771369 None:intergenic 40.0%
ATATTTGGGAGTGGTAGCTA+GGG - chr6_3:98771433-98771452 None:intergenic 40.0%
TATATTTGGGAGTGGTAGCT+AGG - chr6_3:98771434-98771453 None:intergenic 40.0%
AACATATGGATGTGGAAGAC+TGG - chr6_3:98771831-98771850 None:intergenic 40.0%
CTTCCACATCCATATGTTAG+AGG + chr6_3:98771833-98771852 Msa0968410:intron 40.0%
ACTCAAGAAGTGAGTGAGTA+CGG + chr6_3:98771980-98771999 Msa0968410:intron 40.0%
CACTACTGCCACCATAACAA+AGG - chr6_3:98768666-98768685 None:intergenic 45.0%
ATAACATCAGCCACCCTTTC+CGG + chr6_3:98768753-98768772 Msa0968410:CDS 45.0%
! GACTGTCTTTTAGCCGGAAA+GGG - chr6_3:98768769-98768788 None:intergenic 45.0%
! CTTCTGGACTGTCTTTTAGC+CGG - chr6_3:98768775-98768794 None:intergenic 45.0%
! TCAGATTTGGGACTTGGAGA+CGG + chr6_3:98769196-98769215 Msa0968410:CDS 45.0%
ACATCATGGCCTCTTGAAGA+TGG + chr6_3:98769244-98769263 Msa0968410:CDS 45.0%
TTCTACAGACATGCGTCGAA+TGG + chr6_3:98769279-98769298 Msa0968410:CDS 45.0%
GAATCTTTATCACGTGCCCT+AGG - chr6_3:98769484-98769503 None:intergenic 45.0%
! TTGGGGCATCCTTGACTTTA+AGG - chr6_3:98769954-98769973 None:intergenic 45.0%
! TTGGAAGCTTGTGAGCATTG+GGG - chr6_3:98769971-98769990 None:intergenic 45.0%
! CTTTGGAAGCTTGTGAGCAT+TGG - chr6_3:98769973-98769992 None:intergenic 45.0%
ACAGGTTTGCAGGTATGCTT+TGG - chr6_3:98769990-98770009 None:intergenic 45.0%
AAAAAAGACACGCCCTAACG+AGG + chr6_3:98770020-98770039 Msa0968410:intron 45.0%
GTTAATCGTCCTCCTCGTTA+GGG - chr6_3:98770035-98770054 None:intergenic 45.0%
AGTTAATCGTCCTCCTCGTT+AGG - chr6_3:98770036-98770055 None:intergenic 45.0%
!! TTCTTTGGTTGGTTTGGTGC+TGG - chr6_3:98770059-98770078 None:intergenic 45.0%
GCACCAAACCAACCAAAGAA+AGG + chr6_3:98770059-98770078 Msa0968410:intron 45.0%
! TGGCCTTTCTTTGGTTGGTT+TGG - chr6_3:98770065-98770084 None:intergenic 45.0%
ACCAACACCAATAGTAGGCA+GGG + chr6_3:98770132-98770151 Msa0968410:intron 45.0%
GCGTATCCTTTCAATGGGTA+GGG + chr6_3:98770155-98770174 Msa0968410:intron 45.0%
CGTATCCTTTCAATGGGTAG+GGG + chr6_3:98770156-98770175 Msa0968410:intron 45.0%
CTCATCATCCCCTTCTTAGA+AGG - chr6_3:98771317-98771336 None:intergenic 45.0%
TATGGATGTGGAAGACTGGT+GGG - chr6_3:98771827-98771846 None:intergenic 45.0%
ATATGGATGTGGAAGACTGG+TGG - chr6_3:98771828-98771847 None:intergenic 45.0%
CTCCCTCTAACATATGGATG+TGG - chr6_3:98771839-98771858 None:intergenic 45.0%
CTGACACTCCCTCTAACATA+TGG - chr6_3:98771845-98771864 None:intergenic 45.0%
ATGTTCTTGCAGATGACCAC+TGG + chr6_3:98772068-98772087 Msa0968410:intron 45.0%
TTACATATGAAAGCCGGGGA+AGG - chr6_3:98772106-98772125 None:intergenic 45.0%
AGGGCTTACATATGAAAGCC+GGG - chr6_3:98772111-98772130 None:intergenic 45.0%
GAGGGCTTACATATGAAAGC+CGG - chr6_3:98772112-98772131 None:intergenic 45.0%
!!! CAAAATTTTAAAAAATAAAT+TGG + chr6_3:98769541-98769560 Msa0968410:intron 5.0%
!!! ATTAATTTTTTTTTTATAGT+TGG + chr6_3:98770828-98770847 Msa0968410:intron 5.0%
!! TTATTAAATTTATAGATAAA+AGG - chr6_3:98771677-98771696 None:intergenic 5.0%
! TGTCTTTTAGCCGGAAAGGG+TGG - chr6_3:98768766-98768785 None:intergenic 50.0%
! GGACTGTCTTTTAGCCGGAA+AGG - chr6_3:98768770-98768789 None:intergenic 50.0%
! CAGATTTGGGACTTGGAGAC+GGG + chr6_3:98769197-98769216 Msa0968410:CDS 50.0%
! ACTTGGAGACGGGTGTCATA+TGG + chr6_3:98769207-98769226 Msa0968410:CDS 50.0%
ATGCTGATGACATGTGCCCT+AGG + chr6_3:98769464-98769483 Msa0968410:intron 50.0%
TGCTGATGACATGTGCCCTA+GGG + chr6_3:98769465-98769484 Msa0968410:intron 50.0%
AGGGATGGCCTTTCTTTGGT+TGG - chr6_3:98770070-98770089 None:intergenic 50.0%
GACCAACACCAATAGTAGGC+AGG + chr6_3:98770131-98770150 Msa0968410:intron 50.0%
CCAACACCAATAGTAGGCAG+GGG + chr6_3:98770133-98770152 Msa0968410:intron 50.0%
! CAGGGGCGTATCCTTTCAAT+GGG + chr6_3:98770150-98770169 Msa0968410:intron 50.0%
GGCGTATCCTTTCAATGGGT+AGG + chr6_3:98770154-98770173 Msa0968410:intron 50.0%
! ATTTTTCCTAGCTTCGCCGC+TGG + chr6_3:98770863-98770882 Msa0968410:intron 50.0%
GGGATGTGTGGCTTAAGTGT+TGG - chr6_3:98771107-98771126 None:intergenic 50.0%
CTTAAGCCACACATCCCTCT+AGG + chr6_3:98771110-98771129 Msa0968410:intron 50.0%
!! GATGTAGCTTTGGTCCCTAC+CGG - chr6_3:98771145-98771164 None:intergenic 50.0%
! GGAAGCCACTTTACCCTCTT+TGG + chr6_3:98771226-98771245 Msa0968410:intron 50.0%
ATGTGGAAGACTGGTGGGAA+AGG - chr6_3:98771822-98771841 None:intergenic 50.0%
AAGGTAGGGCAAAAAGCCAG+TGG - chr6_3:98772087-98772106 None:intergenic 50.0%
TATGAAAGCCGGGGAAGGTA+GGG - chr6_3:98772101-98772120 None:intergenic 50.0%
ATATGAAAGCCGGGGAAGGT+AGG - chr6_3:98772102-98772121 None:intergenic 50.0%
GGGCTTACATATGAAAGCCG+GGG - chr6_3:98772110-98772129 None:intergenic 50.0%
! GTGAGTGTTTGGGGCAAACC+TGG - chr6_3:98769400-98769419 None:intergenic 55.0%
AAAGACACGCCCTAACGAGG+AGG + chr6_3:98770023-98770042 Msa0968410:intron 55.0%
GTGCAGGGATGGCCTTTCTT+TGG - chr6_3:98770074-98770093 None:intergenic 55.0%
AGCCGACATCGTTGGGTGAT+GGG - chr6_3:98770102-98770121 None:intergenic 55.0%
GTGTTGGAGCCGACATCGTT+GGG - chr6_3:98770109-98770128 None:intergenic 55.0%
TGTGTTGGAGCCGACATCGT+TGG - chr6_3:98770110-98770129 None:intergenic 55.0%
CCCCTGCCTACTATTGGTGT+TGG - chr6_3:98770136-98770155 None:intergenic 55.0%
GATACGCCCCTGCCTACTAT+TGG - chr6_3:98770142-98770161 None:intergenic 55.0%
! GCAGGGGCGTATCCTTTCAA+TGG + chr6_3:98770149-98770168 Msa0968410:intron 55.0%
GGCTACCCCTACCCATTGAA+AGG - chr6_3:98770164-98770183 None:intergenic 55.0%
GTGCTTCCTAGAGGGATGTG+TGG - chr6_3:98771119-98771138 None:intergenic 55.0%
! TCCCTCTAGGAAGCACGAAC+CGG + chr6_3:98771123-98771142 Msa0968410:intron 55.0%
!! ACCGGTTCGTGCTTCCTAGA+GGG - chr6_3:98771127-98771146 None:intergenic 55.0%
!! TACCGGTTCGTGCTTCCTAG+AGG - chr6_3:98771128-98771147 None:intergenic 55.0%
! TCTAGGAAGCACGAACCGGT+AGG + chr6_3:98771127-98771146 Msa0968410:intron 55.0%
! CTAGGAAGCACGAACCGGTA+GGG + chr6_3:98771128-98771147 Msa0968410:intron 55.0%
! GCTTTTTGCCCTACCTTCCC+CGG + chr6_3:98772090-98772109 Msa0968410:CDS 55.0%
!! CGACATCGTTGGGTGATGGG+GGG - chr6_3:98770099-98770118 None:intergenic 60.0%
! CCGACATCGTTGGGTGATGG+GGG - chr6_3:98770100-98770119 None:intergenic 60.0%
CCCCCATCACCCAACGATGT+CGG + chr6_3:98770097-98770116 Msa0968410:intron 60.0%
GCCGACATCGTTGGGTGATG+GGG - chr6_3:98770101-98770120 None:intergenic 60.0%
GAGCCGACATCGTTGGGTGA+TGG - chr6_3:98770103-98770122 None:intergenic 60.0%
TCAATGGGTAGGGGTAGCCC+TGG + chr6_3:98770165-98770184 Msa0968410:intron 60.0%
! TTCATGCGGGTTGTCGCCAG+CGG - chr6_3:98770882-98770901 None:intergenic 60.0%
GATGGGGGGTAGTGCAGGGA+TGG - chr6_3:98770085-98770104 None:intergenic 65.0%
!! GGGTGATGGGGGGTAGTGCA+GGG - chr6_3:98770089-98770108 None:intergenic 65.0%
!! TGGGTGATGGGGGGTAGTGC+AGG - chr6_3:98770090-98770109 None:intergenic 65.0%
TTGTCGCCAGCGGCGAAGCT+AGG - chr6_3:98770872-98770891 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98768647 98772162 98768647 ID=Msa0968410;Name=Msa0968410
chr6_3 mRNA 98768647 98772162 98768647 ID=Msa0968410-mRNA-1;Parent=Msa0968410;Name=Msa0968410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0|1|1|1|2|0|278
chr6_3 exon 98768647 98769400 98768647 ID=Msa0968410-mRNA-1:exon:18576;Parent=Msa0968410-mRNA-1
chr6_3 exon 98772080 98772162 98772080 ID=Msa0968410-mRNA-1:exon:18577;Parent=Msa0968410-mRNA-1
chr6_3 CDS 98768647 98769400 98768647 ID=Msa0968410-mRNA-1:cds;Parent=Msa0968410-mRNA-1
chr6_3 CDS 98772080 98772162 98772080 ID=Msa0968410-mRNA-1:cds;Parent=Msa0968410-mRNA-1
Gene Sequence

>Msa0968410

ATGCTTTCCTTAACATCCTTTGTTATGGTGGCAGTAGTGATACTAATTAGCAACAAAGTGTATGGGGATGAGCAAAAAGAGTCATGTTCAAGAAAGTGCGGTGTTCATAACATCAGCCACCCTTTCCGGCTAAAAGACAGTCCAGAAGAATGTGGTGACAAAAGGTACAACCTATTATGTGAGGACAATAATGAATTGATTTTGTACTATGAATTTGAAGAACACCATGGAAAATATTATGTACAATCAATTAATTACAACAACTTCACCATACGACTATTGGATTTCAATCTTGCTTCTTCTAATAATTCCATCCCTCCTTATTATTCTTTAGGGCTCTATAATTTCAGTTCTAACTTCATCACCTCACCCTACCTAGCTTTTAATGGATACGAAAACTACACTCATCATATATTGACGAAATCTATGTTATATGTGAGCTGTAAAAATCGGTCGGAATATATTGATGAAGGTGGTAACTGTATGAATAGTAGCTCATATTCACAGTACGAGAATTCTTTCTATGTTGGTGGTTACCAAAAATCTCTTTCAGATTTGGGACTTGGAGACGGGTGTCATATGGAATCTATGTATCTCACATCATGGCCTCTTGAAGATGGAAACAATATTTCTTCTACAGACATGCGTCGAATGGTGTTTTATGGATTTGAACTTTCATGGCTCAATAGTCTTTGTAATGATGGTTTCTATGCGCAGAGTAATCAATATAACCAGCATTTATGTATAGATCCAGATGACCACTGGCTTTTTGCCCTACCTTCCCCGGCTTTCATATGTAAGCCCTCACATTCCCTTAATTCAAGACATGCTAAATAA

Protein sequence

>Msa0968410

MLSLTSFVMVAVVILISNKVYGDEQKESCSRKCGVHNISHPFRLKDSPEECGDKRYNLLCEDNNELILYYEFEEHHGKYYVQSINYNNFTIRLLDFNLASSNNSIPPYYSLGLYNFSSNFITSPYLAFNGYENYTHHILTKSMLYVSCKNRSEYIDEGGNCMNSSSYSQYENSFYVGGYQKSLSDLGLGDGCHMESMYLTSWPLEDGNNISSTDMRRMVFYGFELSWLNSLCNDGFYAQSNQYNQHLCIDPDDHWLFALPSPAFICKPSHSLNSRHAK*