Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152110 | RHN77992.1 | 71.875 | 256 | 62 | 6 | 4 | 255 | 2 | 251 | 2.54e-112 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152110 | A0A396JKW1 | 71.875 | 256 | 62 | 6 | 4 | 255 | 2 | 251 | 1.21e-112 | 347 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060790 | Msa0152110 | 0.899673 | 1.569497e-77 | -8.615850e-47 |
| Msa0152110 | Msa0229630 | 0.805643 | 1.208880e-49 | -8.615850e-47 |
| Msa0152110 | Msa0968410 | 0.964021 | 8.346448e-123 | -8.615850e-47 |
| Msa0152110 | Msa0968430 | 0.846045 | 2.779687e-59 | -8.615850e-47 |
| Msa0152110 | Msa1383140 | 0.810567 | 1.081061e-50 | -8.615850e-47 |
| Msa0152110 | Msa1389180 | 0.809602 | 1.744681e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152110 | MtrunA17_Chr1g0160711 | 71.875 | 256 | 62 | 6 | 4 | 255 | 2 | 251 | 2.34e-116 | 347 |
| Msa0152110 | MtrunA17_Chr1g0160761 | 66.148 | 257 | 74 | 4 | 1 | 248 | 1 | 253 | 4.99e-104 | 316 |
| Msa0152110 | MtrunA17_Chr1g0160661 | 62.451 | 253 | 82 | 5 | 1 | 251 | 27 | 268 | 6.71e-95 | 288 |
| Msa0152110 | MtrunA17_Chr1g0160721 | 57.529 | 259 | 97 | 5 | 1 | 257 | 12 | 259 | 1.52e-84 | 266 |
| Msa0152110 | MtrunA17_Chr1g0160561 | 51.908 | 262 | 105 | 7 | 3 | 250 | 7 | 261 | 4.72e-77 | 246 |
| Msa0152110 | MtrunA17_Chr1g0160701 | 56.627 | 249 | 86 | 11 | 18 | 255 | 33 | 270 | 1.51e-71 | 232 |
| Msa0152110 | MtrunA17_Chr1g0158061 | 35.514 | 214 | 117 | 8 | 33 | 234 | 35 | 239 | 7.75e-30 | 114 |
| Msa0152110 | MtrunA17_Chr1g0158151 | 36.327 | 245 | 124 | 12 | 25 | 247 | 27 | 261 | 9.90e-29 | 115 |
| Msa0152110 | MtrunA17_Chr1g0157961 | 35.714 | 224 | 123 | 8 | 24 | 234 | 33 | 248 | 1.09e-28 | 111 |
| Msa0152110 | MtrunA17_Chr1g0157791 | 35.270 | 241 | 128 | 10 | 24 | 247 | 28 | 257 | 3.09e-28 | 113 |
| Msa0152110 | MtrunA17_Chr1g0157991 | 35.526 | 228 | 122 | 8 | 24 | 234 | 28 | 247 | 8.37e-28 | 112 |
| Msa0152110 | MtrunA17_Chr3g0088331 | 34.167 | 240 | 121 | 11 | 23 | 247 | 36 | 253 | 1.06e-26 | 105 |
| Msa0152110 | MtrunA17_Chr1g0158411 | 32.283 | 254 | 134 | 9 | 2 | 234 | 15 | 251 | 2.10e-26 | 108 |
| Msa0152110 | MtrunA17_Chr1g0158191 | 35.021 | 237 | 111 | 12 | 24 | 233 | 24 | 244 | 9.63e-26 | 106 |
| Msa0152110 | MtrunA17_Chr1g0158461 | 31.227 | 269 | 140 | 12 | 1 | 234 | 16 | 274 | 7.70e-25 | 101 |
| Msa0152110 | MtrunA17_Chr1g0157881 | 30.916 | 262 | 109 | 11 | 33 | 234 | 60 | 309 | 1.02e-23 | 100 |
| Msa0152110 | MtrunA17_Chr1g0158041 | 33.790 | 219 | 119 | 7 | 33 | 234 | 36 | 245 | 2.25e-23 | 99.8 |
| Msa0152110 | MtrunA17_Chr6g0467711 | 35.160 | 219 | 106 | 9 | 33 | 234 | 48 | 247 | 2.92e-23 | 99.4 |
| Msa0152110 | MtrunA17_Chr1g0158761 | 30.672 | 238 | 126 | 10 | 8 | 234 | 9 | 218 | 1.10e-21 | 94.7 |
| Msa0152110 | MtrunA17_Chr1g0158661 | 28.409 | 264 | 151 | 9 | 13 | 257 | 23 | 267 | 1.49e-21 | 94.4 |
| Msa0152110 | MtrunA17_Chr1g0158631 | 29.496 | 278 | 145 | 10 | 5 | 251 | 11 | 268 | 2.44e-20 | 90.5 |
| Msa0152110 | MtrunA17_Chr1g0158731 | 29.688 | 256 | 143 | 8 | 1 | 234 | 1 | 241 | 4.88e-20 | 87.8 |
| Msa0152110 | MtrunA17_Chr1g0158541 | 31.707 | 246 | 141 | 10 | 5 | 234 | 16 | 250 | 9.32e-20 | 89.0 |
| Msa0152110 | MtrunA17_Chr1g0157861 | 27.365 | 296 | 128 | 13 | 33 | 269 | 45 | 312 | 2.58e-19 | 87.8 |
| Msa0152110 | MtrunA17_Chr1g0158331 | 30.075 | 266 | 140 | 12 | 1 | 234 | 16 | 267 | 2.99e-19 | 85.9 |
| Msa0152110 | MtrunA17_Chr1g0157911 | 30.631 | 222 | 121 | 9 | 33 | 234 | 42 | 250 | 1.69e-18 | 85.1 |
| Msa0152110 | MtrunA17_Chr1g0158301 | 28.512 | 242 | 143 | 10 | 8 | 234 | 22 | 248 | 4.76e-15 | 75.1 |
| Msa0152110 | MtrunA17_Chr1g0158121 | 45.263 | 95 | 45 | 3 | 24 | 116 | 29 | 118 | 9.87e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | 1_4:+14589237 | Msa0152110:CDS |
| ATTTAGCATGTCTTGAATTA+AGG | 0.180260 | 1_4:-14592394 | None:intergenic |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | 1_4:+14589238 | Msa0152110:CDS |
| CATTATTGTCCTCACATAAT+AGG | 0.236387 | 1_4:-14589095 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | 1_4:+14589185 | Msa0152110:CDS |
| TTCCTTAACATCCTTTGTTA+TGG | 0.276218 | 1_4:+14588930 | Msa0152110:CDS |
| ATAACATCAGCCACCCTTTC+CGG | 0.297512 | 1_4:+14589031 | Msa0152110:CDS |
| TTTATGGATTTGAACTTTCA+TGG | 0.314825 | 1_4:+14589583 | Msa0152110:CDS |
| CTCAATAGTCTTTGTAATGA+TGG | 0.335428 | 1_4:+14589606 | Msa0152110:CDS |
| TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | 1_4:-14589243 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 1_4:+14589468 | Msa0152110:CDS |
| TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | 1_4:-14592393 | None:intergenic |
| CACCATAACAAAGGATGTTA+AGG | 0.392467 | 1_4:-14588932 | None:intergenic |
| CTAATTAGCAACAAAGTGTA+TGG | 0.423091 | 1_4:+14588967 | Msa0152110:CDS |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 1_4:+14589475 | Msa0152110:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 1_4:+14589485 | Msa0152110:CDS |
| CAGCATTTATGTATAGATCC+AGG | 0.447944 | 1_4:+14589657 | Msa0152110:CDS |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | 1_4:-14589299 | None:intergenic |
| CTTAACATCCTTTGTTATGG+TGG | 0.464676 | 1_4:+14588933 | Msa0152110:CDS |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | 1_4:+14589522 | Msa0152110:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | 1_4:+14589435 | Msa0152110:CDS |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | 1_4:+14589432 | Msa0152110:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 1_4:+14589474 | Msa0152110:CDS |
| CAGAAGAATGTGGTGACAAA+AGG | 0.492801 | 1_4:+14589067 | Msa0152110:CDS |
| ATGTTCTTGCAGATGACCAC+TGG | 0.505032 | 1_4:+14592324 | Msa0152110:intron |
| AGGGCTTACATATGAAAGCC+GGG | 0.509438 | 1_4:-14592364 | None:intergenic |
| TATGAAAGCCGGGGAAGGTA+GGG | 0.509508 | 1_4:-14592354 | None:intergenic |
| ATATGAAAGCCGGGGAAGGT+AGG | 0.518798 | 1_4:-14592355 | None:intergenic |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | 1_4:-14589295 | None:intergenic |
| CGGTCGGAATATATTGATGA+AGG | 0.526826 | 1_4:+14589375 | Msa0152110:CDS |
| CTGGATCTATACATAAATGC+TGG | 0.539585 | 1_4:-14589656 | None:intergenic |
| TTCTACAGACATGCGTCGAA+TGG | 0.543277 | 1_4:+14589557 | Msa0152110:CDS |
| GAGGGCTTACATATGAAAGC+CGG | 0.545576 | 1_4:-14592365 | None:intergenic |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | 1_4:-14589235 | None:intergenic |
| TAATTAGCAACAAAGTGTAT+GGG | 0.560784 | 1_4:+14588968 | Msa0152110:CDS |
| ATTGAAATCCAATAGTCGTA+TGG | 0.568248 | 1_4:-14589193 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | 1_4:+14589508 | Msa0152110:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | 1_4:-14589239 | None:intergenic |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | 1_4:-14589531 | None:intergenic |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | 1_4:-14589289 | None:intergenic |
| TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | 1_4:-14592384 | None:intergenic |
| TTACATATGAAAGCCGGGGA+AGG | 0.620719 | 1_4:-14592359 | None:intergenic |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | 1_4:-14589240 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | 1_4:-14589294 | None:intergenic |
| AATTAGCAACAAAGTGTATG+GGG | 0.626387 | 1_4:+14588969 | Msa0152110:CDS |
| CACTACTGCCACCATAACAA+AGG | 0.635961 | 1_4:-14588941 | None:intergenic |
| TCGGAATATATTGATGAAGG+TGG | 0.639500 | 1_4:+14589378 | Msa0152110:CDS |
| CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | 1_4:-14592383 | None:intergenic |
| GAGTCATGTTCAAGAAAGTG+CGG | 0.671036 | 1_4:+14589003 | Msa0152110:CDS |
| TATGAATTTGAAGAACACCA+TGG | 0.674399 | 1_4:+14589132 | Msa0152110:CDS |
| AAGGTACAACCTATTATGTG+AGG | 0.675468 | 1_4:+14589086 | Msa0152110:CDS |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 1_4:+14589057 | Msa0152110:CDS |
| GGGCTTACATATGAAAGCCG+GGG | 0.696923 | 1_4:-14592363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTTATATTA+TGG | + | chr1_4:14589716-14589735 | Msa0152110:intron | 0.0% |
| !!! | TTTTTTTATTTTTATATTAT+GGG | + | chr1_4:14589717-14589736 | Msa0152110:intron | 0.0% |
| !!! | TATTTTTTTTTTTTTTGTGA+TGG | - | chr1_4:14589954-14589973 | None:intergenic | 10.0% |
| !!! | AATAATAATTTTTGTTTTTG+GGG | - | chr1_4:14590470-14590489 | None:intergenic | 10.0% |
| !!! | CAATAATAATTTTTGTTTTT+GGG | - | chr1_4:14590471-14590490 | None:intergenic | 10.0% |
| !!! | ACAATAATAATTTTTGTTTT+TGG | - | chr1_4:14590472-14590491 | None:intergenic | 10.0% |
| !!! | AAATTATAATTTTTTAGGTT+TGG | - | chr1_4:14591017-14591036 | None:intergenic | 10.0% |
| !!! | CCTATAAATTATAATTTTTT+AGG | - | chr1_4:14591022-14591041 | None:intergenic | 10.0% |
| !! | CCTAAAAAATTATAATTTAT+AGG | + | chr1_4:14591019-14591038 | Msa0152110:intron | 10.0% |
| !!! | TATCTTTAAAATTAATATGT+TGG | + | chr1_4:14591057-14591076 | Msa0152110:intron | 10.0% |
| !! | AAAAATACGTATTATTCAAT+TGG | + | chr1_4:14590104-14590123 | Msa0152110:intron | 15.0% |
| !! | TTCCAAATAAATTATATTTG+AGG | + | chr1_4:14590161-14590180 | Msa0152110:intron | 15.0% |
| !! | TACCTCAAATATAATTTATT+TGG | - | chr1_4:14590166-14590185 | None:intergenic | 15.0% |
| !! | AAAATTATTATTGTAGTAGT+TGG | + | chr1_4:14590478-14590497 | Msa0152110:intron | 15.0% |
| !!! | TTCTTATTTATGCTAATTTT+CGG | - | chr1_4:14590567-14590586 | None:intergenic | 15.0% |
| !! | ATTGATAGATTTATTTGTAT+TGG | + | chr1_4:14590606-14590625 | Msa0152110:intron | 15.0% |
| !!! | ATTTTGTAAATAGTGATTTA+TGG | + | chr1_4:14590752-14590771 | Msa0152110:intron | 15.0% |
| !!! | ATTGAATAAATTTGTTTGTA+AGG | + | chr1_4:14590990-14591009 | Msa0152110:intron | 15.0% |
| !! | GTAAATAAGAGAAAAATTAA+GGG | - | chr1_4:14592048-14592067 | None:intergenic | 15.0% |
| !! | TGTAAATAAGAGAAAAATTA+AGG | - | chr1_4:14592049-14592068 | None:intergenic | 15.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | - | chr1_4:14589152-14589171 | None:intergenic | 20.0% |
| !!! | GTTACTTGTTTTTTTTTTCT+GGG | - | chr1_4:14590206-14590225 | None:intergenic | 20.0% |
| !!! | AGTTACTTGTTTTTTTTTTC+TGG | - | chr1_4:14590207-14590226 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTCTTTCTTTTAC+AGG | - | chr1_4:14590284-14590303 | None:intergenic | 20.0% |
| !! | AGCTCAATATTTATTAATTG+AGG | - | chr1_4:14590524-14590543 | None:intergenic | 20.0% |
| !!! | TAGATTTATTTGTATTGGTT+TGG | + | chr1_4:14590611-14590630 | Msa0152110:intron | 20.0% |
| !! | TAGTGATTTATGGATAAAAT+TGG | + | chr1_4:14590762-14590781 | Msa0152110:intron | 20.0% |
| !!! | AAAAAAAGTGTTTTTAGTCT+TGG | - | chr1_4:14590940-14590959 | None:intergenic | 20.0% |
| !!! | TCATGTTTTTAAGGTATTTT+AGG | - | chr1_4:14591294-14591313 | None:intergenic | 20.0% |
| !! | CTTAAAAACATGATATATGA+CGG | + | chr1_4:14591301-14591320 | Msa0152110:intron | 20.0% |
| !! | GAAACTCCAAATATATATTT+CGG | + | chr1_4:14591461-14591480 | Msa0152110:intron | 20.0% |
| !! | ATTTGTATTGTGTTAATGTA+GGG | - | chr1_4:14591629-14591648 | None:intergenic | 20.0% |
| !! | AATTTGTATTGTGTTAATGT+AGG | - | chr1_4:14591630-14591649 | None:intergenic | 20.0% |
| !! | TACATTAACACAATACAAAT+TGG | + | chr1_4:14591629-14591648 | Msa0152110:intron | 20.0% |
| !!! | GACCATGTATTTTTATATTT+GGG | - | chr1_4:14591703-14591722 | None:intergenic | 20.0% |
| !!! | TGACCATGTATTTTTATATT+TGG | - | chr1_4:14591704-14591723 | None:intergenic | 20.0% |
| !!! | AGTATCTAGTTTAGTAATTT+TGG | - | chr1_4:14591861-14591880 | None:intergenic | 20.0% |
| !! | TACTAAACTAGATACTAAAA+TGG | + | chr1_4:14591865-14591884 | Msa0152110:intron | 20.0% |
| !! | TAGATACTAAAATGGATAAA+GGG | + | chr1_4:14591873-14591892 | Msa0152110:intron | 20.0% |
| !!! | TTCTTTTACCGTTTAAAAAT+TGG | + | chr1_4:14592179-14592198 | Msa0152110:intron | 20.0% |
| ! | TAATTAGCAACAAAGTGTAT+GGG | + | chr1_4:14588968-14588987 | Msa0152110:CDS | 25.0% |
| ! | TATATGTGAGCTGTAAAAAT+CGG | + | chr1_4:14589355-14589374 | Msa0152110:CDS | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | + | chr1_4:14589462-14589481 | Msa0152110:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCA+TGG | + | chr1_4:14589583-14589602 | Msa0152110:CDS | 25.0% |
| !!! | TTGTCAAAATGGTCTTATTT+AGG | - | chr1_4:14590050-14590069 | None:intergenic | 25.0% |
| ! | GTTATGTATGTTTGTCAAAA+TGG | - | chr1_4:14590061-14590080 | None:intergenic | 25.0% |
| ! | TATTTATTAATTGAGGTAGC+TGG | - | chr1_4:14590517-14590536 | None:intergenic | 25.0% |
| !! | ATTTTCCAATGTACACAAAT+AGG | - | chr1_4:14590719-14590738 | None:intergenic | 25.0% |
| !! | CTTAGTTAATTTTCATGCAT+TGG | + | chr1_4:14590834-14590853 | Msa0152110:intron | 25.0% |
| !!! | TTCATGCATTGGTTAATTTT+TGG | + | chr1_4:14590845-14590864 | Msa0152110:intron | 25.0% |
| !!! | CGTCATATATCATGTTTTTA+AGG | - | chr1_4:14591303-14591322 | None:intergenic | 25.0% |
| !!! | CTTGTAATGCTGTTTTTATT+TGG | - | chr1_4:14591536-14591555 | None:intergenic | 25.0% |
| ! | TTTGTATTGTGTTAATGTAG+GGG | - | chr1_4:14591628-14591647 | None:intergenic | 25.0% |
| !!! | TGTATTTTTATATTTGGGAG+TGG | - | chr1_4:14591698-14591717 | None:intergenic | 25.0% |
| ! | CTCCCAAATATAAAAATACA+TGG | + | chr1_4:14591698-14591717 | Msa0152110:intron | 25.0% |
| ! | CTAGATACTAAAATGGATAA+AGG | + | chr1_4:14591872-14591891 | Msa0152110:intron | 25.0% |
| ! | AGATACTAAAATGGATAAAG+GGG | + | chr1_4:14591874-14591893 | Msa0152110:intron | 25.0% |
| !! | GTGTAACACCAATTTTTAAA+CGG | - | chr1_4:14592190-14592209 | None:intergenic | 25.0% |
| ! | TAGATCCATTGTAAACAAAT+TGG | + | chr1_4:14592271-14592290 | Msa0152110:intron | 25.0% |
| !! | AACTACCAATTTGTTTACAA+TGG | - | chr1_4:14592279-14592298 | None:intergenic | 25.0% |
| ! | TTTAGCATGTCTTGAATTAA+GGG | - | chr1_4:14592396-14592415 | None:intergenic | 25.0% |
| ! | ATTTAGCATGTCTTGAATTA+AGG | - | chr1_4:14592397-14592416 | None:intergenic | 25.0% |
| TTCCTTAACATCCTTTGTTA+TGG | + | chr1_4:14588930-14588949 | Msa0152110:CDS | 30.0% | |
| CTAATTAGCAACAAAGTGTA+TGG | + | chr1_4:14588967-14588986 | Msa0152110:CDS | 30.0% | |
| AATTAGCAACAAAGTGTATG+GGG | + | chr1_4:14588969-14588988 | Msa0152110:CDS | 30.0% | |
| CATTATTGTCCTCACATAAT+AGG | - | chr1_4:14589098-14589117 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | + | chr1_4:14589132-14589151 | Msa0152110:CDS | 30.0% | |
| ATTGAAATCCAATAGTCGTA+TGG | - | chr1_4:14589196-14589215 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | - | chr1_4:14589238-14589257 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | + | chr1_4:14589237-14589256 | Msa0152110:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | + | chr1_4:14589238-14589257 | Msa0152110:CDS | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | - | chr1_4:14589246-14589265 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | - | chr1_4:14589297-14589316 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | - | chr1_4:14589302-14589321 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | + | chr1_4:14589432-14589451 | Msa0152110:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | - | chr1_4:14589464-14589483 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | + | chr1_4:14589461-14589480 | Msa0152110:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | + | chr1_4:14589508-14589527 | Msa0152110:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | - | chr1_4:14589534-14589553 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+TGG | + | chr1_4:14589606-14589625 | Msa0152110:CDS | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+GGG | - | chr1_4:14589687-14589706 | None:intergenic | 30.0% | |
| GTAAAGTAAAGTGAGTGTTT+GGG | - | chr1_4:14589688-14589707 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | + | chr1_4:14589687-14589706 | Msa0152110:intron | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | + | chr1_4:14589860-14589879 | Msa0152110:intron | 30.0% |
| TTCGGCAATTGAACTTATTT+GGG | - | chr1_4:14590549-14590568 | None:intergenic | 30.0% | |
| TTTCGGCAATTGAACTTATT+TGG | - | chr1_4:14590550-14590569 | None:intergenic | 30.0% | |
| CATAACCTATTTGTGTACAT+TGG | + | chr1_4:14590711-14590730 | Msa0152110:intron | 30.0% | |
| ! | CATATTAGTTTCTTTCATGC+GGG | - | chr1_4:14591151-14591170 | None:intergenic | 30.0% |
| ! | GCATATTAGTTTCTTTCATG+CGG | - | chr1_4:14591152-14591171 | None:intergenic | 30.0% |
| TTTGTAAAATTTCACAGCAC+CGG | - | chr1_4:14591224-14591243 | None:intergenic | 30.0% | |
| AATCAAGTGTAGTTGATTGA+TGG | - | chr1_4:14591331-14591350 | None:intergenic | 30.0% | |
| GGAGATATTTGTTTGAGAAT+CGG | - | chr1_4:14591432-14591451 | None:intergenic | 30.0% | |
| TGGCTTCCGAAATATATATT+TGG | - | chr1_4:14591470-14591489 | None:intergenic | 30.0% | |
| AAATTCAGATCAACCAAAGA+GGG | - | chr1_4:14591498-14591517 | None:intergenic | 30.0% | |
| AAAATTCAGATCAACCAAAG+AGG | - | chr1_4:14591499-14591518 | None:intergenic | 30.0% | |
| ! | AAATGCAACTTTTATCTCGT+GGG | + | chr1_4:14591973-14591992 | Msa0152110:intron | 30.0% |
| GCAAGAACATACAAAAAAGA+TGG | - | chr1_4:14592314-14592333 | None:intergenic | 30.0% | |
| CACCATAACAAAGGATGTTA+AGG | - | chr1_4:14588935-14588954 | None:intergenic | 35.0% | |
| ! | CTTAACATCCTTTGTTATGG+TGG | + | chr1_4:14588933-14588952 | Msa0152110:CDS | 35.0% |
| AAGGTACAACCTATTATGTG+AGG | + | chr1_4:14589086-14589105 | Msa0152110:CDS | 35.0% | |
| GCCCTAAAGAATAATAAGGA+GGG | - | chr1_4:14589242-14589261 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | - | chr1_4:14589243-14589262 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | - | chr1_4:14589298-14589317 | None:intergenic | 35.0% | |
| TCGGAATATATTGATGAAGG+TGG | + | chr1_4:14589378-14589397 | Msa0152110:CDS | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | + | chr1_4:14589435-14589454 | Msa0152110:CDS | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | - | chr1_4:14589659-14589678 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | + | chr1_4:14589657-14589676 | Msa0152110:CDS | 35.0% | |
| CGTAAAGTAAAGTGAGTGTT+TGG | - | chr1_4:14589689-14589708 | None:intergenic | 35.0% | |
| ! | GATACAAGAGTACAAGAAGT+GGG | + | chr1_4:14590003-14590022 | Msa0152110:intron | 35.0% |
| AGAAGTGGGAAATACTTCTA+TGG | + | chr1_4:14590017-14590036 | Msa0152110:intron | 35.0% | |
| ACACGCACACAACTTAAAAT+AGG | - | chr1_4:14590141-14590160 | None:intergenic | 35.0% | |
| CAAGTAACTCCTTAAAGTCA+AGG | + | chr1_4:14590218-14590237 | Msa0152110:intron | 35.0% | |
| ! | TCTTTCTTTTACAGGTTTGC+AGG | - | chr1_4:14590276-14590295 | None:intergenic | 35.0% |
| TCGGCAATTGAACTTATTTG+GGG | - | chr1_4:14590548-14590567 | None:intergenic | 35.0% | |
| ! | CTAGGAAAAATTTTACGCAG+GGG | - | chr1_4:14591110-14591129 | None:intergenic | 35.0% |
| ! | GCTAGGAAAAATTTTACGCA+GGG | - | chr1_4:14591111-14591130 | None:intergenic | 35.0% |
| ! | AGCTAGGAAAAATTTTACGC+AGG | - | chr1_4:14591112-14591131 | None:intergenic | 35.0% |
| ! | TTGAAAGTGTGATTCTAGTG+AGG | - | chr1_4:14591192-14591211 | None:intergenic | 35.0% |
| ACACTTTCAAGACCAAAAAC+CGG | + | chr1_4:14591202-14591221 | Msa0152110:intron | 35.0% | |
| ! | ATTTGGAGTTTCATCATGCA+GGG | - | chr1_4:14591453-14591472 | None:intergenic | 35.0% |
| ! | TATTTGGAGTTTCATCATGC+AGG | - | chr1_4:14591454-14591473 | None:intergenic | 35.0% |
| ! | TTCTCAACACCTTCTAAGAA+GGG | + | chr1_4:14591561-14591580 | Msa0152110:intron | 35.0% |
| !! | AAATCACTTGGTGTTTGCTT+GGG | - | chr1_4:14591605-14591624 | None:intergenic | 35.0% |
| TTAATGTAGGGGAAATCACT+TGG | - | chr1_4:14591617-14591636 | None:intergenic | 35.0% | |
| GTGCTTAAATTAATGCTAGC+AGG | + | chr1_4:14591655-14591674 | Msa0152110:intron | 35.0% | |
| ! | GAAATGCAACTTTTATCTCG+TGG | + | chr1_4:14591972-14591991 | Msa0152110:intron | 35.0% |
| TTCCACATCCATATGTTAGA+GGG | + | chr1_4:14592090-14592109 | Msa0152110:intron | 35.0% | |
| CTTGAATTAAGGGAATGTGA+GGG | - | chr1_4:14592386-14592405 | None:intergenic | 35.0% | |
| TCTTGAATTAAGGGAATGTG+AGG | - | chr1_4:14592387-14592406 | None:intergenic | 35.0% | |
| GAGTCATGTTCAAGAAAGTG+CGG | + | chr1_4:14589003-14589022 | Msa0152110:CDS | 40.0% | |
| AAAGACAGTCCAGAAGAATG+TGG | + | chr1_4:14589057-14589076 | Msa0152110:CDS | 40.0% | |
| ! | CTTTTGTCACCACATTCTTC+TGG | - | chr1_4:14589069-14589088 | None:intergenic | 40.0% |
| CAGAAGAATGTGGTGACAAA+AGG | + | chr1_4:14589067-14589086 | Msa0152110:CDS | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | + | chr1_4:14589185-14589204 | Msa0152110:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | - | chr1_4:14589292-14589311 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | + | chr1_4:14589291-14589310 | Msa0152110:CDS | 40.0% |
| TGTGAGCTGTAAAAATCGGT+CGG | + | chr1_4:14589359-14589378 | Msa0152110:CDS | 40.0% | |
| CGGTCGGAATATATTGATGA+AGG | + | chr1_4:14589375-14589394 | Msa0152110:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | + | chr1_4:14589468-14589487 | Msa0152110:CDS | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | + | chr1_4:14589567-14589586 | Msa0152110:CDS | 40.0% |
| AATCTTTATCACGTGCCCTA+GGG | - | chr1_4:14589761-14589780 | None:intergenic | 40.0% | |
| ! | CGATACAAGAGTACAAGAAG+TGG | + | chr1_4:14590002-14590021 | Msa0152110:intron | 40.0% |
| TTAGGAAGCTTGTGAGCATT+GGG | - | chr1_4:14590248-14590267 | None:intergenic | 40.0% | |
| !! | TATTGGTGTTGGTCTTGTGT+TGG | - | chr1_4:14590401-14590420 | None:intergenic | 40.0% |
| ACAAGACCAACACCAATAGT+AGG | + | chr1_4:14590403-14590422 | Msa0152110:intron | 40.0% | |
| !!! | TTTTGTTTTTGGGGTAGCCA+GGG | - | chr1_4:14590461-14590480 | None:intergenic | 40.0% |
| !!! | TTTTTGTTTTTGGGGTAGCC+AGG | - | chr1_4:14590462-14590481 | None:intergenic | 40.0% |
| !!! | AATTTCACAGCACCGGTTTT+TGG | - | chr1_4:14591217-14591236 | None:intergenic | 40.0% |
| GGATGAGTTTGATGTAGCTT+TGG | - | chr1_4:14591411-14591430 | None:intergenic | 40.0% | |
| ATCAACCAAAGAGGGTAAAG+TGG | - | chr1_4:14591490-14591509 | None:intergenic | 40.0% | |
| !! | CTTCTTAGAAGGTGTTGAGA+AGG | - | chr1_4:14591562-14591581 | None:intergenic | 40.0% |
| ! | CTTCTCAACACCTTCTAAGA+AGG | + | chr1_4:14591560-14591579 | Msa0152110:intron | 40.0% |
| ! | TCTCAACACCTTCTAAGAAG+GGG | + | chr1_4:14591562-14591581 | Msa0152110:intron | 40.0% |
| !! | AATCACTTGGTGTTTGCTTG+GGG | - | chr1_4:14591604-14591623 | None:intergenic | 40.0% |
| !! | GAAATCACTTGGTGTTTGCT+TGG | - | chr1_4:14591606-14591625 | None:intergenic | 40.0% |
| ATATTTGGGAGTGGTAGCTA+GGG | - | chr1_4:14591689-14591708 | None:intergenic | 40.0% | |
| TATATTTGGGAGTGGTAGCT+AGG | - | chr1_4:14591690-14591709 | None:intergenic | 40.0% | |
| AACATATGGATGTGGAAGAC+TGG | - | chr1_4:14592087-14592106 | None:intergenic | 40.0% | |
| CTTCCACATCCATATGTTAG+AGG | + | chr1_4:14592089-14592108 | Msa0152110:intron | 40.0% | |
| ACTCAAGAAGTGAGTGAGTA+CGG | + | chr1_4:14592236-14592255 | Msa0152110:intron | 40.0% | |
| CACTACTGCCACCATAACAA+AGG | - | chr1_4:14588944-14588963 | None:intergenic | 45.0% | |
| ATAACATCAGCCACCCTTTC+CGG | + | chr1_4:14589031-14589050 | Msa0152110:CDS | 45.0% | |
| ! | GACTGTCTTTTAGCCGGAAA+GGG | - | chr1_4:14589047-14589066 | None:intergenic | 45.0% |
| ! | CTTCTGGACTGTCTTTTAGC+CGG | - | chr1_4:14589053-14589072 | None:intergenic | 45.0% |
| ! | TCAGATTTGGGACTTGGAGA+CGG | + | chr1_4:14589474-14589493 | Msa0152110:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | + | chr1_4:14589522-14589541 | Msa0152110:CDS | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | + | chr1_4:14589557-14589576 | Msa0152110:CDS | 45.0% | |
| GAATCTTTATCACGTGCCCT+AGG | - | chr1_4:14589762-14589781 | None:intergenic | 45.0% | |
| ! | TTGGGGCATCCTTGACTTTA+AGG | - | chr1_4:14590230-14590249 | None:intergenic | 45.0% |
| ! | TAGGAAGCTTGTGAGCATTG+GGG | - | chr1_4:14590247-14590266 | None:intergenic | 45.0% |
| CTTAGGAAGCTTGTGAGCAT+TGG | - | chr1_4:14590249-14590268 | None:intergenic | 45.0% | |
| ACAGGTTTGCAGGTATGCTT+AGG | - | chr1_4:14590266-14590285 | None:intergenic | 45.0% | |
| AAAAAAGACACGCCCTAACG+AGG | + | chr1_4:14590296-14590315 | Msa0152110:intron | 45.0% | |
| GTTAATCGTCCTCCTCGTTA+GGG | - | chr1_4:14590311-14590330 | None:intergenic | 45.0% | |
| AGTTAATCGTCCTCCTCGTT+AGG | - | chr1_4:14590312-14590331 | None:intergenic | 45.0% | |
| !! | TTCTTTGGTTGGTTTGGTGC+TGG | - | chr1_4:14590335-14590354 | None:intergenic | 45.0% |
| GCACCAAACCAACCAAAGAA+AGG | + | chr1_4:14590335-14590354 | Msa0152110:intron | 45.0% | |
| ! | TGGCCTTTCTTTGGTTGGTT+TGG | - | chr1_4:14590341-14590360 | None:intergenic | 45.0% |
| ACCAACACCAATAGTAGGCA+GGG | + | chr1_4:14590408-14590427 | Msa0152110:intron | 45.0% | |
| GCGTATCCTTTCAATGGGTA+GGG | + | chr1_4:14590431-14590450 | Msa0152110:intron | 45.0% | |
| CGTATCCTTTCAATGGGTAG+GGG | + | chr1_4:14590432-14590451 | Msa0152110:intron | 45.0% | |
| CTCATCATCCCCTTCTTAGA+AGG | - | chr1_4:14591573-14591592 | None:intergenic | 45.0% | |
| TATGGATGTGGAAGACTGGT+GGG | - | chr1_4:14592083-14592102 | None:intergenic | 45.0% | |
| ATATGGATGTGGAAGACTGG+TGG | - | chr1_4:14592084-14592103 | None:intergenic | 45.0% | |
| CTCCCTCTAACATATGGATG+TGG | - | chr1_4:14592095-14592114 | None:intergenic | 45.0% | |
| CTGACACTCCCTCTAACATA+TGG | - | chr1_4:14592101-14592120 | None:intergenic | 45.0% | |
| ATGTTCTTGCAGATGACCAC+TGG | + | chr1_4:14592324-14592343 | Msa0152110:intron | 45.0% | |
| TTACATATGAAAGCCGGGGA+AGG | - | chr1_4:14592362-14592381 | None:intergenic | 45.0% | |
| AGGGCTTACATATGAAAGCC+GGG | - | chr1_4:14592367-14592386 | None:intergenic | 45.0% | |
| GAGGGCTTACATATGAAAGC+CGG | - | chr1_4:14592368-14592387 | None:intergenic | 45.0% | |
| !!! | CAAAATTTTAAAAAATAAAT+TGG | + | chr1_4:14589819-14589838 | Msa0152110:intron | 5.0% |
| !!! | AATTAATTTTTTTTTATAGT+TGG | + | chr1_4:14591084-14591103 | Msa0152110:intron | 5.0% |
| !! | TTATTAAATTTATAGATAAA+AGG | - | chr1_4:14591933-14591952 | None:intergenic | 5.0% |
| ! | TGTCTTTTAGCCGGAAAGGG+TGG | - | chr1_4:14589044-14589063 | None:intergenic | 50.0% |
| ! | GGACTGTCTTTTAGCCGGAA+AGG | - | chr1_4:14589048-14589067 | None:intergenic | 50.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | + | chr1_4:14589475-14589494 | Msa0152110:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | + | chr1_4:14589485-14589504 | Msa0152110:CDS | 50.0% |
| ATGCTGATGACATGTGCCCT+AGG | + | chr1_4:14589742-14589761 | Msa0152110:intron | 50.0% | |
| TGCTGATGACATGTGCCCTA+GGG | + | chr1_4:14589743-14589762 | Msa0152110:intron | 50.0% | |
| AGGGATGGCCTTTCTTTGGT+TGG | - | chr1_4:14590346-14590365 | None:intergenic | 50.0% | |
| GACCAACACCAATAGTAGGC+AGG | + | chr1_4:14590407-14590426 | Msa0152110:intron | 50.0% | |
| CCAACACCAATAGTAGGCAG+GGG | + | chr1_4:14590409-14590428 | Msa0152110:intron | 50.0% | |
| ! | CAGGGGCGTATCCTTTCAAT+GGG | + | chr1_4:14590426-14590445 | Msa0152110:intron | 50.0% |
| GGCGTATCCTTTCAATGGGT+AGG | + | chr1_4:14590430-14590449 | Msa0152110:intron | 50.0% | |
| ! | ATTTTTCCTAGCTTCGCCGC+TGG | + | chr1_4:14591119-14591138 | Msa0152110:intron | 50.0% |
| GGGATGTGTGGCTTAAGTGT+TGG | - | chr1_4:14591363-14591382 | None:intergenic | 50.0% | |
| CTTAAGCCACACATCCCTCT+AGG | + | chr1_4:14591366-14591385 | Msa0152110:intron | 50.0% | |
| !! | GATGTAGCTTTGGTCCCTAC+CGG | - | chr1_4:14591401-14591420 | None:intergenic | 50.0% |
| ! | GGAAGCCACTTTACCCTCTT+TGG | + | chr1_4:14591482-14591501 | Msa0152110:intron | 50.0% |
| ATGTGGAAGACTGGTGGGAA+AGG | - | chr1_4:14592078-14592097 | None:intergenic | 50.0% | |
| AAGGTAGGGCAAAAAGCCAG+TGG | - | chr1_4:14592343-14592362 | None:intergenic | 50.0% | |
| TATGAAAGCCGGGGAAGGTA+GGG | - | chr1_4:14592357-14592376 | None:intergenic | 50.0% | |
| ATATGAAAGCCGGGGAAGGT+AGG | - | chr1_4:14592358-14592377 | None:intergenic | 50.0% | |
| GGGCTTACATATGAAAGCCG+GGG | - | chr1_4:14592366-14592385 | None:intergenic | 50.0% | |
| ! | GTGAGTGTTTGGGGCAAACC+TGG | - | chr1_4:14589678-14589697 | None:intergenic | 55.0% |
| AAAGACACGCCCTAACGAGG+AGG | + | chr1_4:14590299-14590318 | Msa0152110:intron | 55.0% | |
| GTGCAGGGATGGCCTTTCTT+TGG | - | chr1_4:14590350-14590369 | None:intergenic | 55.0% | |
| AGCCGACATCGTTGGGTGAT+GGG | - | chr1_4:14590378-14590397 | None:intergenic | 55.0% | |
| GTGTTGGAGCCGACATCGTT+GGG | - | chr1_4:14590385-14590404 | None:intergenic | 55.0% | |
| TGTGTTGGAGCCGACATCGT+TGG | - | chr1_4:14590386-14590405 | None:intergenic | 55.0% | |
| CCCCTGCCTACTATTGGTGT+TGG | - | chr1_4:14590412-14590431 | None:intergenic | 55.0% | |
| GATACGCCCCTGCCTACTAT+TGG | - | chr1_4:14590418-14590437 | None:intergenic | 55.0% | |
| ! | GCAGGGGCGTATCCTTTCAA+TGG | + | chr1_4:14590425-14590444 | Msa0152110:intron | 55.0% |
| GGCTACCCCTACCCATTGAA+AGG | - | chr1_4:14590440-14590459 | None:intergenic | 55.0% | |
| GTGCTTCCTAGAGGGATGTG+TGG | - | chr1_4:14591375-14591394 | None:intergenic | 55.0% | |
| ! | TCCCTCTAGGAAGCACGAAC+CGG | + | chr1_4:14591379-14591398 | Msa0152110:intron | 55.0% |
| !! | ACCGGTTCGTGCTTCCTAGA+GGG | - | chr1_4:14591383-14591402 | None:intergenic | 55.0% |
| !! | TACCGGTTCGTGCTTCCTAG+AGG | - | chr1_4:14591384-14591403 | None:intergenic | 55.0% |
| ! | TCTAGGAAGCACGAACCGGT+AGG | + | chr1_4:14591383-14591402 | Msa0152110:intron | 55.0% |
| ! | CTAGGAAGCACGAACCGGTA+GGG | + | chr1_4:14591384-14591403 | Msa0152110:intron | 55.0% |
| ! | GCTTTTTGCCCTACCTTCCC+CGG | + | chr1_4:14592346-14592365 | Msa0152110:CDS | 55.0% |
| !! | CGACATCGTTGGGTGATGGG+GGG | - | chr1_4:14590375-14590394 | None:intergenic | 60.0% |
| ! | CCGACATCGTTGGGTGATGG+GGG | - | chr1_4:14590376-14590395 | None:intergenic | 60.0% |
| CCCCCATCACCCAACGATGT+CGG | + | chr1_4:14590373-14590392 | Msa0152110:intron | 60.0% | |
| GCCGACATCGTTGGGTGATG+GGG | - | chr1_4:14590377-14590396 | None:intergenic | 60.0% | |
| GAGCCGACATCGTTGGGTGA+TGG | - | chr1_4:14590379-14590398 | None:intergenic | 60.0% | |
| TCAATGGGTAGGGGTAGCCC+TGG | + | chr1_4:14590441-14590460 | Msa0152110:intron | 60.0% | |
| ! | TTCATGCGGGTTGTCGCCAG+CGG | - | chr1_4:14591138-14591157 | None:intergenic | 60.0% |
| GATGGGGGGTAGTGCAGGGA+TGG | - | chr1_4:14590361-14590380 | None:intergenic | 65.0% | |
| !! | GGGTGATGGGGGGTAGTGCA+GGG | - | chr1_4:14590365-14590384 | None:intergenic | 65.0% |
| !! | TGGGTGATGGGGGGTAGTGC+AGG | - | chr1_4:14590366-14590385 | None:intergenic | 65.0% |
| TTGTCGCCAGCGGCGAAGCT+AGG | - | chr1_4:14591128-14591147 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14588925 | 14592418 | 14588925 | ID=Msa0152110;Name=Msa0152110 |
| chr1_4 | mRNA | 14588925 | 14592418 | 14588925 | ID=Msa0152110-mRNA-1;Parent=Msa0152110;Name=Msa0152110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0|1|1|1|2|0|278 |
| chr1_4 | exon | 14588925 | 14589678 | 14588925 | ID=Msa0152110-mRNA-1:exon:5748;Parent=Msa0152110-mRNA-1 |
| chr1_4 | exon | 14592336 | 14592418 | 14592336 | ID=Msa0152110-mRNA-1:exon:5749;Parent=Msa0152110-mRNA-1 |
| chr1_4 | CDS | 14588925 | 14589678 | 14588925 | ID=Msa0152110-mRNA-1:cds;Parent=Msa0152110-mRNA-1 |
| chr1_4 | CDS | 14592336 | 14592418 | 14592336 | ID=Msa0152110-mRNA-1:cds;Parent=Msa0152110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
