AlfalfaGEDB | Msa1363390

M. sativa cultivar zhongmu-4 / Msa1363390

KEGG: -
GO: -
PFAM: PF00403.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363390	XP_013447106.1	92.481	133	4	1	1	133	1	127	4.57e-81	244

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363390	sp\|O03982\|HIP39_ARATH	49.153	177	46	3	1	133	1	177	8.46e-43	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363390	A0A072TW71	92.481	133	4	1	1	133	1	127	2.18e-81	244

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0306610	Msa1363390	0.980590	1.428981e-150	-8.615850e-47
Msa0545050	Msa1363390	0.800870	1.176339e-48	-8.615850e-47
Msa0576900	Msa1363390	0.800432	1.444971e-48	-8.615850e-47
Msa0714760	Msa1363390	0.802503	5.440521e-49	-8.615850e-47
Msa0888260	Msa1363390	0.800084	1.701536e-48	-8.615850e-47
Msa1122150	Msa1363390	0.816989	4.160274e-52	-8.615850e-47
Msa1160560	Msa1363390	0.828367	9.351499e-55	-8.615850e-47
Msa1175100	Msa1363390	0.803314	3.698032e-49	-8.615850e-47
Msa1218570	Msa1363390	0.800865	1.179115e-48	-8.615850e-47
Msa1363390	Msa1386660	0.967902	6.391268e-128	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363390	MtrunA17_Chr8g0387471	92.481	133	4	1	1	133	1	127	4.21e-85	244
Msa1363390	MtrunA17_Chr8g0348361	53.691	149	53	1	1	133	1	149	6.68e-37	123
Msa1363390	MtrunA17_Chr6g0469651	52.941	136	58	2	1	133	1	133	2.09e-33	114
Msa1363390	MtrunA17_Chr6g0469681	50.000	138	53	3	1	133	1	127	5.18e-33	112
Msa1363390	MtrunA17_Chr6g0469571	48.120	133	60	1	1	133	1	124	1.41e-32	111
Msa1363390	MtrunA17_Chr6g0469551	47.368	133	61	1	1	133	1	124	4.16e-32	110
Msa1363390	MtrunA17_Chr1g0202541	47.407	135	68	2	1	132	1	135	4.28e-32	110
Msa1363390	MtrunA17_Chr6g0469591	46.617	133	62	1	1	133	1	124	2.06e-30	105
Msa1363390	MtrunA17_Chr1g0202561	49.306	144	55	4	1	132	1	138	5.20e-29	102
Msa1363390	MtrunA17_Chr1g0202501	50.000	134	62	3	1	133	1	130	5.55e-29	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363390	AT1G01490.1	49.153	177	46	3	1	133	1	177	8.60e-44	142
Msa1363390	AT1G01490.2	49.153	177	46	3	1	133	1	177	8.60e-44	142
Msa1363390	AT1G01490.4	48.571	175	46	3	3	133	30	204	1.41e-42	139
Msa1363390	AT1G01490.3	40.278	144	42	3	34	133	1	144	2.81e-21	83.6
Msa1363390	AT5G52740.1	43.609	133	56	4	1	131	1	116	6.51e-19	76.6
Msa1363390	AT5G52760.1	38.017	121	57	4	2	119	4	109	5.34e-16	69.7
Msa1363390	AT1G63950.2	44.776	67	37	0	1	67	1	67	1.76e-13	62.8
Msa1363390	AT1G63960.2	40.000	70	41	1	1	69	11	80	2.22e-12	60.5
Msa1363390	AT1G63950.1	42.188	64	37	0	4	67	1	64	1.18e-11	57.8
Msa1363390	AT5G52750.1	43.077	65	37	0	3	67	5	69	4.33e-11	57.0

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Find 59 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGAAAGCCATGAAAT+CGG	0.493020	tig0018036:+230025	Msa1363390:CDS
AAAGCATAGAATAGAAGATT+TGG	0.328856	tig0018036:+231054	Msa1363390:three_prime_UTR
AAATCGGTTTCTAGCCTTTC+AGG	0.141123	tig0018036:+230041	Msa1363390:CDS
AACAGATAACACAAGCATTT+GGG	0.403989	tig0018036:-231005	None:intergenic
AAGGATTGAATGTTTAGAAG+TGG	0.485327	tig0018036:-229347	None:intergenic
AAGGCTAGAAACCGATTTCA+TGG	0.398452	tig0018036:-230036	None:intergenic
AAGTGTTGATATTTAATTGT+AGG	0.377594	tig0018036:-229408	None:intergenic
AATACACCATAATCCTCATC+AGG	0.477270	tig0018036:-231407	None:intergenic
AATGTGTGGATTGTTAATTG+CGG	0.752410	tig0018036:+231255	Msa1363390:three_prime_UTR
AATTAAGAGAGGGAGTAGGA+AGG	0.531811	tig0018036:-229366	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGATTGAATGTTTAGAAG+TGG	-	tig0018036:229350-229369	None:intergenic	30.0%
GATATTTAATTGTAGGAAGG+AGG	-	tig0018036:229404-229423	None:intergenic	30.0%
TTGACTGATCTTCAAAACTT+TGG	+	tig0018036:229429-229448	Msa1363390:five_prime_UTR	30.0%
ATGAAACAAGTAAGGAAATG+GGG	-	tig0018036:229704-229723	None:intergenic	30.0%
GCTAAACACGATTTAATAGA+AGG	+	tig0018036:229818-229837	Msa1363390:intron	30.0%
CAGGAAAATGAAATCATTGT+TGG	-	tig0018036:230253-230272	None:intergenic	30.0%
TTCCTGAGTAAGTATACAAT+TGG	+	tig0018036:230267-230286	Msa1363390:intron	30.0%
ATTCAAAAAACATCACTCCA+TGG	-	tig0018036:230397-230416	None:intergenic	30.0%
ATACATGACAATGTGTGAAA+TGG	+	tig0018036:230506-230525	Msa1363390:intron	30.0%
AAACCAAAACATGTCTCAAT+CGG	+	tig0018036:230640-230659	Msa1363390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018036	gene	229237	231575	229237	ID=Msa1363390;Name=Msa1363390
tig0018036	mRNA	229237	231575	229237	ID=Msa1363390-mRNA-1;Parent=Msa1363390;Name=Msa1363390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=227\|1\|1\|1\|1\|1\|3\|546\|133
tig0018036	exon	229237	229469	229237	ID=Msa1363390-mRNA-1:exon:13476;Parent=Msa1363390-mRNA-1
tig0018036	exon	229987	230062	229987	ID=Msa1363390-mRNA-1:exon:13477;Parent=Msa1363390-mRNA-1
tig0018036	exon	230710	231575	230710	ID=Msa1363390-mRNA-1:exon:13478;Parent=Msa1363390-mRNA-1
tig0018036	five_prime_UTR	229237	229463	229237	ID=Msa1363390-mRNA-1:five_prime_utr;Parent=Msa1363390-mRNA-1
tig0018036	CDS	229464	229469	229464	ID=Msa1363390-mRNA-1:cds;Parent=Msa1363390-mRNA-1
tig0018036	CDS	229987	230062	229987	ID=Msa1363390-mRNA-1:cds;Parent=Msa1363390-mRNA-1
tig0018036	CDS	230710	231029	230710	ID=Msa1363390-mRNA-1:cds;Parent=Msa1363390-mRNA-1
tig0018036	three_prime_UTR	231030	231575	231030	ID=Msa1363390-mRNA-1:three_prime_utr;Parent=Msa1363390-mRNA-1

Gene Sequence

>Msa1363390

ATGAAGAAAATAGTGGTGAAGTTGGACTTGCATGATGACAAAGCAAAGCAGAAAGCCATGAAATCGGTTTCTAGCCTTTCAGGCATTGATTCTATCGCCATGGACATGAAAGACAAGAAGTTGACAGTGGTGGGCAACATAGACCCTGTTGATGTTGTGAGCAAATTGAGAAAAACTTGGCACACAGAAATTTTAACGGTTGGGCCGGCAAAAGAGCCGGAGAAGAAAAAAGACGAAGGCAAAAAAGATGATAATAAGAAGAAAGAAGATGACAAGAAGAAAGATCCAAATGAACAAATTGCTGAGCTTATTAAGCAATACAGAGGATACAATCCCTACATGACTCAATACTATCATGTTCAGAGTGTAGAAGAGAACCCAAATGCTTGTGTTATCTGTTGA

Protein sequence

>Msa1363390

MKKIVVKLDLHDDKAKQKAMKSVSSLSGIDSIAMDMKDKKLTVVGNIDPVDVVSKLRKTWHTEILTVGPAKEPEKKKDEGKKDDNKKKEDDKKKDPNEQIAELIKQYRGYNPYMTQYYHVQSVEENPNACVIC*