AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0164540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164540 MtrunA17_Chr3g0108671 97.222 216 6 0 1 216 1 216 1.58e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164540 AT5G58250.1 78.417 139 30 0 75 213 70 208 8.12e-78 233

Find 83 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTTCTTGAAATTT+TGG 0.059619 1_4:-44036986 None:intergenic
CACCATCCAGATTCATATTT+AGG 0.173330 1_4:-44038985 None:intergenic
GACTTCAAAGATGAGATATT+TGG 0.199811 1_4:+44039348 Msa0164540:three_prime_UTR
TTATTGATTGGCATATAAAA+AGG 0.239359 1_4:+44039439 Msa0164540:three_prime_UTR
TGGGAAACTTTCTTGCCTTC+TGG 0.255591 1_4:+44039006 Msa0164540:CDS
TAAAATAAAGTAAGAATATA+AGG 0.289363 1_4:+44036626 None:intergenic
TGTCATTGAGCCTAAATTCT+TGG 0.289570 1_4:+44037989 Msa0164540:CDS
GAAGAAACAGCAGTGATAAA+AGG 0.290892 1_4:-44037008 None:intergenic
AGCAGGCCTCCGCAGTTTCT+TGG 0.307372 1_4:-44038030 None:intergenic
TTTGAACGCCGTCGCTACTA+TGG 0.311898 1_4:+44037936 Msa0164540:CDS
GGAAAACTATCCAAGAATTT+AGG 0.316224 1_4:-44037999 None:intergenic
AAGAGAGAGTGGGACAATTC+GGG 0.320498 1_4:-44036688 None:intergenic
GTTAGAAAGGATGTGCCTTT+TGG 0.329162 1_4:-44036922 None:intergenic
GGCGTTCAAATAGTTGTTCT+TGG 0.330758 1_4:-44037923 None:intergenic
TCCCATTCTGTTTCAGTAAC+CGG 0.331475 1_4:+44039064 Msa0164540:three_prime_UTR
TCACTCTTTACCAATGAGTT+TGG 0.337284 1_4:+44036950 Msa0164540:CDS
GAAGAGAGAGTGGGACAATT+CGG 0.339603 1_4:-44036689 None:intergenic
AGAAATGGATCTACAAATTC+CGG 0.347964 1_4:-44039083 None:intergenic
GTCCTTAGGATCTAAGTTCT+AGG 0.357771 1_4:+44039213 Msa0164540:three_prime_UTR
GTAATAAAGAACAGGATTAC+TGG 0.370944 1_4:+44037964 Msa0164540:CDS
CCCTATCCTAAATATGAATC+TGG 0.374851 1_4:+44038979 Msa0164540:CDS
ATCTATATTTCACTCATTTG+AGG 0.401260 1_4:-44039249 None:intergenic
TATAAAGTTTGTGTAAAGGC+TGG 0.408888 1_4:+44039375 Msa0164540:three_prime_UTR
CGCAGTTTCTTGGTAAAGTC+AGG 0.410742 1_4:-44038020 None:intergenic
AAAGTTGAACTGTTGTCCTT+AGG 0.410946 1_4:+44039199 Msa0164540:three_prime_UTR
TTCTCAAATTCCAGCTTAGT+AGG 0.423773 1_4:-44038937 None:intergenic
CTTGCCTTCTGGACAGAAAG+AGG 0.426855 1_4:+44039017 Msa0164540:CDS
AAATTCCAGCTTAGTAGGAT+TGG 0.428131 1_4:-44038932 None:intergenic
ACAATATCTAACACGCAGTC+GGG 0.440620 1_4:-44039309 None:intergenic
AATTTGAGAAGCCTGCAAAA+TGG 0.444037 1_4:+44038950 Msa0164540:CDS
TGCAAATGCAAAATTTATGC+TGG 0.444095 1_4:+44037884 Msa0164540:CDS
AAGAGTGAGTTCTGTTAGAA+AGG 0.452390 1_4:-44036935 None:intergenic
GGCAATTGGCGAAGAGAGAG+TGG 0.452515 1_4:-44036699 None:intergenic
CCAGATTCATATTTAGGATA+GGG 0.459432 1_4:-44038979 None:intergenic
TGCAACAATAAAATAATACT+TGG 0.464259 1_4:-44037865 None:intergenic
TAGATTTAGATAACTAGATA+AGG 0.465602 1_4:+44036649 Msa0164540:five_prime_UTR
GAAGATGTGTAGAGAGAGTG+AGG 0.472653 1_4:-44036767 None:intergenic
CAGATTCATGAAATTAAGAC+TGG 0.474576 1_4:+44038855 Msa0164540:intron
TGGAGAGCGTAATAAAGAAC+AGG 0.479792 1_4:+44037956 Msa0164540:CDS
TTCCGGTTACTGAAACAGAA+TGG 0.483865 1_4:-44039066 None:intergenic
TGCAAAATTTATGCTGGATG+AGG 0.488625 1_4:+44037890 Msa0164540:CDS
TCCGGTTACTGAAACAGAAT+GGG 0.490312 1_4:-44039065 None:intergenic
ATTATATAAAGTTTGTGTAA+AGG 0.494941 1_4:+44039371 Msa0164540:three_prime_UTR
TAGTGTCAACCAACGGTCCA+TGG 0.496162 1_4:+44038060 Msa0164540:CDS
ATTTGAGAAGCCTGCAAAAT+GGG 0.501452 1_4:+44038951 Msa0164540:CDS
AGTTGGTGAACTCAAAGTTA+AGG 0.501880 1_4:-44036868 None:intergenic
TTCCAGCTTAGTAGGATTGG+AGG 0.503729 1_4:-44038929 None:intergenic
TCCAGATTCATATTTAGGAT+AGG 0.511889 1_4:-44038980 None:intergenic
AGCCTCCAATCCTACTAAGC+TGG 0.514208 1_4:+44038927 Msa0164540:CDS
GCTAGCACGATGCTTGGCAT+GGG 0.515622 1_4:+44036843 Msa0164540:exon
GAGTGGAGAAAGATGGCAAT+TGG 0.516641 1_4:-44036713 None:intergenic
GTTTGAGCTACCATTGTAGT+TGG 0.518753 1_4:-44036885 None:intergenic
TAAATATGAATCTGGATGGT+GGG 0.520478 1_4:+44038987 Msa0164540:CDS
TACCTAGAACTTAGATCCTA+AGG 0.520854 1_4:-44039215 None:intergenic
AGCTAGCACGATGCTTGGCA+TGG 0.522656 1_4:+44036842 Msa0164540:exon
GTGGGAGAGACCAAACTCAT+TGG 0.524830 1_4:-44036960 None:intergenic
TTCTGATGCTCCTGCCACCA+AGG 0.526069 1_4:+44037055 Msa0164540:CDS
CACAATATCTAACACGCAGT+CGG 0.529076 1_4:-44039310 None:intergenic
TCATGTTCTTACGTGATCCA+TGG 0.536324 1_4:-44038077 None:intergenic
ACAAGAGCTAGCACGATGCT+TGG 0.540081 1_4:+44036837 Msa0164540:exon
CCACTCTTACCTCTTCCAAA+AGG 0.546522 1_4:+44036907 Msa0164540:CDS
TTCACCTCTTTCTGTCCAGA+AGG 0.552493 1_4:-44039021 None:intergenic
TTACGTGATCCATGGACCGT+TGG 0.559376 1_4:-44038069 None:intergenic
CTAAATATGAATCTGGATGG+TGG 0.563124 1_4:+44038986 Msa0164540:CDS
AAAATTTATGCTGGATGAGG+AGG 0.565968 1_4:+44037893 Msa0164540:CDS
CAGCAAAGAGTGGAGAAAGA+TGG 0.569234 1_4:-44036720 None:intergenic
AGAGAGAGTGGGACAATTCG+GGG 0.579166 1_4:-44036687 None:intergenic
GAGAGAGTGGGACAATTCGG+GGG 0.587562 1_4:-44036686 None:intergenic
TCTGTTCAATCTGACAACGT+TGG 0.597740 1_4:+44037029 Msa0164540:CDS
ATCCTAAATATGAATCTGGA+TGG 0.610093 1_4:+44038983 Msa0164540:CDS
TTTGAGTTCACCAACTACAA+TGG 0.618572 1_4:+44036875 Msa0164540:CDS
TACGCTCTCCATAGTAGCGA+CGG 0.620144 1_4:-44037944 None:intergenic
CAATATCTAACACGCAGTCG+GGG 0.629805 1_4:-44039308 None:intergenic
GTTATGACAACAGCAAAGAG+TGG 0.634462 1_4:-44036730 None:intergenic
GTTGACACTAGAGCAACAGC+AGG 0.644010 1_4:-44038047 None:intergenic
GCAATTGGCGAAGAGAGAGT+GGG 0.644618 1_4:-44036698 None:intergenic
CTAGCACGATGCTTGGCATG+GGG 0.653262 1_4:+44036844 Msa0164540:exon
TGAGAAGCCTGCAAAATGGG+TGG 0.654553 1_4:+44038954 Msa0164540:CDS
TGTGATAAGATAACGCACAA+AGG 0.658969 1_4:-44036808 None:intergenic
GTTGCTCTAGTGTCAACCAA+CGG 0.671470 1_4:+44038053 Msa0164540:CDS
CTGACTTTACCAAGAAACTG+CGG 0.676341 1_4:+44038021 Msa0164540:CDS
AGAGAGTGGGACAATTCGGG+GGG 0.699858 1_4:-44036685 None:intergenic
ACTTTACCAAGAAACTGCGG+AGG 0.707976 1_4:+44038024 Msa0164540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTATTAATGTTTGAA+AGG + chr1_4:44037188-44037207 Msa0164540:intron 10.0%
!! TATATTATTAATGTTTGAAA+GGG + chr1_4:44037189-44037208 Msa0164540:intron 10.0%
!! AATAAAAATTGTAAGAAATA+AGG + chr1_4:44038728-44038747 Msa0164540:intron 10.0%
!! ATAAAAATTGTAAGAAATAA+GGG + chr1_4:44038729-44038748 Msa0164540:intron 10.0%
!!! TTTATGTTTCTTGAAATTTT+GGG - chr1_4:44036988-44037007 None:intergenic 15.0%
!!! TTCAAACTTTTTGAAAATAT+TGG + chr1_4:44038280-44038299 Msa0164540:intron 15.0%
!! ATTATATAAAGTTTGTGTAA+AGG + chr1_4:44039371-44039390 Msa0164540:three_prime_UTR 15.0%
!! TAGATTTAGATAACTAGATA+AGG + chr1_4:44036649-44036668 Msa0164540:five_prime_UTR 20.0%
!!! GTTTATGTTTCTTGAAATTT+TGG - chr1_4:44036989-44037008 None:intergenic 20.0%
!!! AATATTTGTTTTCTACTAAG+TGG + chr1_4:44037112-44037131 Msa0164540:intron 20.0%
!!! ATCAAGGATTTTCAATTTTA+TGG - chr1_4:44037263-44037282 None:intergenic 20.0%
!! TGCAACAATAAAATAATACT+TGG - chr1_4:44037868-44037887 None:intergenic 20.0%
!! TCATATTATACAACTTGAAA+GGG - chr1_4:44038709-44038728 None:intergenic 20.0%
!! TTCATATTATACAACTTGAA+AGG - chr1_4:44038710-44038729 None:intergenic 20.0%
!! TTTACATTAACAAAAATCGT+TGG - chr1_4:44039109-44039128 None:intergenic 20.0%
!!! GATTTTTGTTAATGTAAAAC+TGG + chr1_4:44039111-44039130 Msa0164540:three_prime_UTR 20.0%
!!! AGTTTACACTTTTTATTGAT+TGG + chr1_4:44039427-44039446 Msa0164540:three_prime_UTR 20.0%
! TCATTCTCTCTTATCTTTAA+AGG - chr1_4:44037445-44037464 None:intergenic 25.0%
! TTAAAGATAAGAGAGAATGA+TGG + chr1_4:44037445-44037464 Msa0164540:intron 25.0%
! AGTTCATTTACGTATCAAAT+TGG + chr1_4:44037666-44037685 Msa0164540:intron 25.0%
! ATAAACTATGACCATTCAAT+TGG + chr1_4:44038135-44038154 Msa0164540:intron 25.0%
!! TCAAAAAGTTTGAATTTTCC+CGG - chr1_4:44038274-44038293 None:intergenic 25.0%
!!! AGACATCTATTTTAGCTATT+AGG - chr1_4:44038355-44038374 None:intergenic 25.0%
!!! GTTCAGATTTTTTAATGGTA+GGG - chr1_4:44038424-44038443 None:intergenic 25.0%
!!! AGATGGTTCAGATTTTTTAA+TGG - chr1_4:44038429-44038448 None:intergenic 25.0%
!! AATAACTCAGATTTTAAGCT+CGG - chr1_4:44038512-44038531 None:intergenic 25.0%
! AAAAAACAAAATGAAGACTC+TGG - chr1_4:44038584-44038603 None:intergenic 25.0%
! GCTGTCAACATATAATAAAA+TGG + chr1_4:44038780-44038799 Msa0164540:intron 25.0%
!!! GCTTTCAGTTTTGTAATTTT+TGG + chr1_4:44039158-44039177 Msa0164540:three_prime_UTR 25.0%
!!! TCAGTTTTGTAATTTTTGGA+AGG + chr1_4:44039162-44039181 Msa0164540:three_prime_UTR 25.0%
! ATCTATATTTCACTCATTTG+AGG - chr1_4:44039252-44039271 None:intergenic 25.0%
!!! TTCTTGAAATTTTGGGTTGT+GGG - chr1_4:44036981-44037000 None:intergenic 30.0%
!!! TTTCTTGAAATTTTGGGTTG+TGG - chr1_4:44036982-44037001 None:intergenic 30.0%
GATAAGAGAAAAAGAAACCT+TGG - chr1_4:44037075-44037094 None:intergenic 30.0%
!!! TGCAATTTTGAGGTCAATTT+TGG - chr1_4:44037226-44037245 None:intergenic 30.0%
! ATTACAAGCATGCAATTTTG+AGG - chr1_4:44037236-44037255 None:intergenic 30.0%
GACTCAAAATAATGTGATCA+AGG - chr1_4:44037279-44037298 None:intergenic 30.0%
! AGAACTACTAGTTTCATTTC+CGG + chr1_4:44037689-44037708 Msa0164540:intron 30.0%
CAATTAACTGTTGTTCTTGA+TGG + chr1_4:44037747-44037766 Msa0164540:intron 30.0%
! TCTTGATGGTTTATAAGCAT+TGG + chr1_4:44037761-44037780 Msa0164540:intron 30.0%
!!! ACTTATTGAGTTGGTTTTTG+TGG + chr1_4:44037795-44037814 Msa0164540:intron 30.0%
TGCAAATGCAAAATTTATGC+TGG + chr1_4:44037884-44037903 Msa0164540:CDS 30.0%
GTAATAAAGAACAGGATTAC+TGG + chr1_4:44037964-44037983 Msa0164540:CDS 30.0%
GGAAAACTATCCAAGAATTT+AGG - chr1_4:44038002-44038021 None:intergenic 30.0%
AAGCATCTAATCCAATTGAA+TGG - chr1_4:44038149-44038168 None:intergenic 30.0%
ATCGTTGGATTAAAATCAGA+CGG + chr1_4:44038199-44038218 Msa0164540:intron 30.0%
!!! GGTTCAGATTTTTTAATGGT+AGG - chr1_4:44038425-44038444 None:intergenic 30.0%
! ATAACTCAGATTTTAAGCTC+GGG - chr1_4:44038511-44038530 None:intergenic 30.0%
!!! TTTTTGTTTTTACCCCTTAG+AGG + chr1_4:44038599-44038618 Msa0164540:intron 30.0%
CTAAAAGTAGAGATGCAAAA+GGG - chr1_4:44038659-44038678 None:intergenic 30.0%
ACTAAAAGTAGAGATGCAAA+AGG - chr1_4:44038660-44038679 None:intergenic 30.0%
TATTATACAACTTGAAAGGG+TGG - chr1_4:44038706-44038725 None:intergenic 30.0%
CAGATTCATGAAATTAAGAC+TGG + chr1_4:44038855-44038874 Msa0164540:intron 30.0%
! CCAGATTCATATTTAGGATA+GGG - chr1_4:44038982-44039001 None:intergenic 30.0%
! TCCAGATTCATATTTAGGAT+AGG - chr1_4:44038983-44039002 None:intergenic 30.0%
ATCCTAAATATGAATCTGGA+TGG + chr1_4:44038983-44039002 Msa0164540:CDS 30.0%
TAAATATGAATCTGGATGGT+GGG + chr1_4:44038987-44039006 Msa0164540:CDS 30.0%
AGAAATGGATCTACAAATTC+CGG - chr1_4:44039086-44039105 None:intergenic 30.0%
AACAAAAATCGTTGGAGAAA+TGG - chr1_4:44039101-44039120 None:intergenic 30.0%
GACTTCAAAGATGAGATATT+TGG + chr1_4:44039348-44039367 Msa0164540:three_prime_UTR 30.0%
TATAAAGTTTGTGTAAAGGC+TGG + chr1_4:44039375-44039394 Msa0164540:three_prime_UTR 30.0%
TGTGATAAGATAACGCACAA+AGG - chr1_4:44036811-44036830 None:intergenic 35.0%
!! AGTTGGTGAACTCAAAGTTA+AGG - chr1_4:44036871-44036890 None:intergenic 35.0%
! TTTGAGTTCACCAACTACAA+TGG + chr1_4:44036875-44036894 Msa0164540:CDS 35.0%
AAGAGTGAGTTCTGTTAGAA+AGG - chr1_4:44036938-44036957 None:intergenic 35.0%
TCACTCTTTACCAATGAGTT+TGG + chr1_4:44036950-44036969 Msa0164540:CDS 35.0%
GAAGAAACAGCAGTGATAAA+AGG - chr1_4:44037011-44037030 None:intergenic 35.0%
AAGAGAAAAAGAAACCTTGG+TGG - chr1_4:44037072-44037091 None:intergenic 35.0%
AGTCAGTTTAGTACCTAAAG+TGG + chr1_4:44037295-44037314 Msa0164540:intron 35.0%
!! ATGACACCTTCTAGTTCATA+AGG - chr1_4:44037410-44037429 None:intergenic 35.0%
!! TATGAACTAGAAGGTGTCAT+TGG + chr1_4:44037410-44037429 Msa0164540:intron 35.0%
!!! TAGAAGGTGTCATTGGTTTT+TGG + chr1_4:44037417-44037436 Msa0164540:intron 35.0%
TGTAGATGAGAGAGAATGAT+TGG + chr1_4:44037489-44037508 Msa0164540:intron 35.0%
! TGATTGGTTAAACGAGAGAT+AGG + chr1_4:44037505-44037524 Msa0164540:intron 35.0%
GTCAATGTCAGATCACTTTA+GGG - chr1_4:44037601-44037620 None:intergenic 35.0%
AGTCAATGTCAGATCACTTT+AGG - chr1_4:44037602-44037621 None:intergenic 35.0%
TTTCATTTCCGGAACTGAAT+TGG + chr1_4:44037700-44037719 Msa0164540:intron 35.0%
ATGAATCACCAATTCAGTTC+CGG - chr1_4:44037711-44037730 None:intergenic 35.0%
TCACGTAGTACTTATTGAGT+TGG + chr1_4:44037786-44037805 Msa0164540:intron 35.0%
TGCAAAATTTATGCTGGATG+AGG + chr1_4:44037890-44037909 Msa0164540:CDS 35.0%
AAAATTTATGCTGGATGAGG+AGG + chr1_4:44037893-44037912 Msa0164540:CDS 35.0%
TGTCATTGAGCCTAAATTCT+TGG + chr1_4:44037989-44038008 Msa0164540:CDS 35.0%
TTAGCTATTAGGCTTAGCTT+AGG - chr1_4:44038344-44038363 None:intergenic 35.0%
TATATGCTTGCATCAAGAGT+TGG + chr1_4:44038379-44038398 Msa0164540:intron 35.0%
ACCATCTGATCTTGATTAGA+TGG + chr1_4:44038442-44038461 Msa0164540:intron 35.0%
AAATTCCAGCTTAGTAGGAT+TGG - chr1_4:44038935-44038954 None:intergenic 35.0%
TTCTCAAATTCCAGCTTAGT+AGG - chr1_4:44038940-44038959 None:intergenic 35.0%
AATTTGAGAAGCCTGCAAAA+TGG + chr1_4:44038950-44038969 Msa0164540:CDS 35.0%
ATTTGAGAAGCCTGCAAAAT+GGG + chr1_4:44038951-44038970 Msa0164540:CDS 35.0%
CCCTATCCTAAATATGAATC+TGG + chr1_4:44038979-44038998 Msa0164540:CDS 35.0%
CACCATCCAGATTCATATTT+AGG - chr1_4:44038988-44039007 None:intergenic 35.0%
CTAAATATGAATCTGGATGG+TGG + chr1_4:44038986-44039005 Msa0164540:CDS 35.0%
AAAGTTGAACTGTTGTCCTT+AGG + chr1_4:44039199-44039218 Msa0164540:three_prime_UTR 35.0%
TACCTAGAACTTAGATCCTA+AGG - chr1_4:44039218-44039237 None:intergenic 35.0%
GTTATGACAACAGCAAAGAG+TGG - chr1_4:44036733-44036752 None:intergenic 40.0%
GTTTGAGCTACCATTGTAGT+TGG - chr1_4:44036888-44036907 None:intergenic 40.0%
! GTTAGAAAGGATGTGCCTTT+TGG - chr1_4:44036925-44036944 None:intergenic 40.0%
TCTGTTCAATCTGACAACGT+TGG + chr1_4:44037029-44037048 Msa0164540:CDS 40.0%
GTTCTCTTGAAGACCACTTT+AGG - chr1_4:44037311-44037330 None:intergenic 40.0%
! GACGAAAGATTGTTCTAGCT+AGG - chr1_4:44037346-44037365 None:intergenic 40.0%
! TCACAATCTAGGATTCGACA+GGG - chr1_4:44037384-44037403 None:intergenic 40.0%
! TTCACAATCTAGGATTCGAC+AGG - chr1_4:44037385-44037404 None:intergenic 40.0%
TGTCGAATCCTAGATTGTGA+AGG + chr1_4:44037384-44037403 Msa0164540:intron 40.0%
TCATAAGGCCTTCACAATCT+AGG - chr1_4:44037395-44037414 None:intergenic 40.0%
! TGAAGGCCTTATGAACTAGA+AGG + chr1_4:44037401-44037420 Msa0164540:intron 40.0%
GATAGGAACCAATGTACCTA+AGG + chr1_4:44037522-44037541 Msa0164540:intron 40.0%
! TTTTGCTTAAACCCTCCAGT+AGG - chr1_4:44037569-44037588 None:intergenic 40.0%
GGCGTTCAAATAGTTGTTCT+TGG - chr1_4:44037926-44037945 None:intergenic 40.0%
! TGGAGAGCGTAATAAAGAAC+AGG + chr1_4:44037956-44037975 Msa0164540:CDS 40.0%
CTGACTTTACCAAGAAACTG+CGG + chr1_4:44038021-44038040 Msa0164540:CDS 40.0%
TCATGTTCTTACGTGATCCA+TGG - chr1_4:44038080-44038099 None:intergenic 40.0%
AGTCAGCATATCTCAATCGT+TGG + chr1_4:44038184-44038203 Msa0164540:intron 40.0%
!! GTCACTGGCTTAAGATCAAA+CGG - chr1_4:44038252-44038271 None:intergenic 40.0%
TTTGATCTTAAGCCAGTGAC+CGG + chr1_4:44038252-44038271 Msa0164540:intron 40.0%
! ATCAAGAGTTGGTCATCTGT+GGG + chr1_4:44038390-44038409 Msa0164540:intron 40.0%
GCCATCTAATCAAGATCAGA+TGG - chr1_4:44038446-44038465 None:intergenic 40.0%
TTAGCAACTGACACCTCTAA+GGG - chr1_4:44038615-44038634 None:intergenic 40.0%
TTTAGCAACTGACACCTCTA+AGG - chr1_4:44038616-44038635 None:intergenic 40.0%
!! AGACTGGATCGAGTTTTATC+AGG + chr1_4:44038871-44038890 Msa0164540:CDS 40.0%
TCCCATTCTGTTTCAGTAAC+CGG + chr1_4:44039064-44039083 Msa0164540:three_prime_UTR 40.0%
TCCGGTTACTGAAACAGAAT+GGG - chr1_4:44039068-44039087 None:intergenic 40.0%
TTCCGGTTACTGAAACAGAA+TGG - chr1_4:44039069-44039088 None:intergenic 40.0%
GTCCTTAGGATCTAAGTTCT+AGG + chr1_4:44039213-44039232 Msa0164540:three_prime_UTR 40.0%
ACAATATCTAACACGCAGTC+GGG - chr1_4:44039312-44039331 None:intergenic 40.0%
CACAATATCTAACACGCAGT+CGG - chr1_4:44039313-44039332 None:intergenic 40.0%
AAGAGAGAGTGGGACAATTC+GGG - chr1_4:44036691-44036710 None:intergenic 45.0%
GAAGAGAGAGTGGGACAATT+CGG - chr1_4:44036692-44036711 None:intergenic 45.0%
GAGTGGAGAAAGATGGCAAT+TGG - chr1_4:44036716-44036735 None:intergenic 45.0%
CAGCAAAGAGTGGAGAAAGA+TGG - chr1_4:44036723-44036742 None:intergenic 45.0%
GAAGATGTGTAGAGAGAGTG+AGG - chr1_4:44036770-44036789 None:intergenic 45.0%
!! CCTTTTGGAAGAGGTAAGAG+TGG - chr1_4:44036910-44036929 None:intergenic 45.0%
CCACTCTTACCTCTTCCAAA+AGG + chr1_4:44036907-44036926 Msa0164540:CDS 45.0%
!! AAGGATGTGCCTTTTGGAAG+AGG - chr1_4:44036919-44036938 None:intergenic 45.0%
! GAAAAAGAAACCTTGGTGGC+AGG - chr1_4:44037068-44037087 None:intergenic 45.0%
ACCAATGTACCTAAGGCCAA+TGG + chr1_4:44037529-44037548 Msa0164540:intron 45.0%
GGATTTCACTTGGATGCCAT+TGG - chr1_4:44037548-44037567 None:intergenic 45.0%
GCATCCAAGTGAAATCCTAC+TGG + chr1_4:44037551-44037570 Msa0164540:intron 45.0%
TCCAAGTGAAATCCTACTGG+AGG + chr1_4:44037554-44037573 Msa0164540:intron 45.0%
CCAAGTGAAATCCTACTGGA+GGG + chr1_4:44037555-44037574 Msa0164540:intron 45.0%
CGCAGTTTCTTGGTAAAGTC+AGG - chr1_4:44038023-44038042 None:intergenic 45.0%
ACTTTACCAAGAAACTGCGG+AGG + chr1_4:44038024-44038043 Msa0164540:CDS 45.0%
GTTGCTCTAGTGTCAACCAA+CGG + chr1_4:44038053-44038072 Msa0164540:CDS 45.0%
TTGATCTTAAGCCAGTGACC+GGG + chr1_4:44038253-44038272 Msa0164540:intron 45.0%
! GTTTGAATTTTCCCGGTCAC+TGG - chr1_4:44038267-44038286 None:intergenic 45.0%
GCTATTAGGCTTAGCTTAGG+TGG - chr1_4:44038341-44038360 None:intergenic 45.0%
! CATCAAGAGTTGGTCATCTG+TGG + chr1_4:44038389-44038408 Msa0164540:intron 45.0%
! TCCTGATTTGCATGACTGCA+TGG + chr1_4:44038539-44038558 Msa0164540:intron 45.0%
TCCATGCAGTCATGCAAATC+AGG - chr1_4:44038543-44038562 None:intergenic 45.0%
TAGCAACTGACACCTCTAAG+GGG - chr1_4:44038614-44038633 None:intergenic 45.0%
AAGGGTGGATCTCTATCTGA+TGG - chr1_4:44038691-44038710 None:intergenic 45.0%
AATCTGCCAAAACACGCACA+GGG - chr1_4:44038841-44038860 None:intergenic 45.0%
TTCCAGCTTAGTAGGATTGG+AGG - chr1_4:44038932-44038951 None:intergenic 45.0%
TGGGAAACTTTCTTGCCTTC+TGG + chr1_4:44039006-44039025 Msa0164540:CDS 45.0%
TTCACCTCTTTCTGTCCAGA+AGG - chr1_4:44039024-44039043 None:intergenic 45.0%
CAATATCTAACACGCAGTCG+GGG - chr1_4:44039311-44039330 None:intergenic 45.0%
GACAATTCGGGGGGATATCA+TGG - chr1_4:44036679-44036698 None:intergenic 50.0%
AGAGAGAGTGGGACAATTCG+GGG - chr1_4:44036690-44036709 None:intergenic 50.0%
GCAATTGGCGAAGAGAGAGT+GGG - chr1_4:44036701-44036720 None:intergenic 50.0%
ACAAGAGCTAGCACGATGCT+TGG + chr1_4:44036837-44036856 Msa0164540:exon 50.0%
GTGGGAGAGACCAAACTCAT+TGG - chr1_4:44036963-44036982 None:intergenic 50.0%
!! GCCATTGGCCTTAGGTACAT+TGG - chr1_4:44037533-44037552 None:intergenic 50.0%
!! ACTTGGATGCCATTGGCCTT+AGG - chr1_4:44037541-44037560 None:intergenic 50.0%
CCCTCCAGTAGGATTTCACT+TGG - chr1_4:44037558-44037577 None:intergenic 50.0%
TTTGAACGCCGTCGCTACTA+TGG + chr1_4:44037936-44037955 Msa0164540:CDS 50.0%
TACGCTCTCCATAGTAGCGA+CGG - chr1_4:44037947-44037966 None:intergenic 50.0%
GTTGACACTAGAGCAACAGC+AGG - chr1_4:44038050-44038069 None:intergenic 50.0%
TAGTGTCAACCAACGGTCCA+TGG + chr1_4:44038060-44038079 Msa0164540:CDS 50.0%
TTACGTGATCCATGGACCGT+TGG - chr1_4:44038072-44038091 None:intergenic 50.0%
! GAGTTGGTCATCTGTGGGAT+TGG + chr1_4:44038395-44038414 Msa0164540:intron 50.0%
ATCTGCCAAAACACGCACAG+GGG - chr1_4:44038840-44038859 None:intergenic 50.0%
GAATCTGCCAAAACACGCAC+AGG - chr1_4:44038842-44038861 None:intergenic 50.0%
AGCCTCCAATCCTACTAAGC+TGG + chr1_4:44038927-44038946 Msa0164540:CDS 50.0%
TGAGAAGCCTGCAAAATGGG+TGG + chr1_4:44038954-44038973 Msa0164540:CDS 50.0%
CTTGCCTTCTGGACAGAAAG+AGG + chr1_4:44039017-44039036 Msa0164540:CDS 50.0%
AGAGAGTGGGACAATTCGGG+GGG - chr1_4:44036688-44036707 None:intergenic 55.0%
GAGAGAGTGGGACAATTCGG+GGG - chr1_4:44036689-44036708 None:intergenic 55.0%
GGCAATTGGCGAAGAGAGAG+TGG - chr1_4:44036702-44036721 None:intergenic 55.0%
AGCTAGCACGATGCTTGGCA+TGG + chr1_4:44036842-44036861 Msa0164540:exon 55.0%
GCTAGCACGATGCTTGGCAT+GGG + chr1_4:44036843-44036862 Msa0164540:exon 55.0%
CTAGCACGATGCTTGGCATG+GGG + chr1_4:44036844-44036863 Msa0164540:exon 55.0%
TTCTGATGCTCCTGCCACCA+AGG + chr1_4:44037055-44037074 Msa0164540:CDS 55.0%
CTGCATGGATTCCTGACTGC+AGG + chr1_4:44038554-44038573 Msa0164540:intron 55.0%
ACTCTGGATTGCCTGCAGTC+AGG - chr1_4:44038568-44038587 None:intergenic 55.0%
!! TAGGGTGCCACCCATTTTGC+AGG - chr1_4:44038964-44038983 None:intergenic 55.0%
AGCAGGCCTCCGCAGTTTCT+TGG - chr1_4:44038033-44038052 None:intergenic 60.0%
! CTCTGCCCCTGTGCGTGTTT+TGG + chr1_4:44038832-44038851 Msa0164540:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 44036631 44039460 44036631 ID=Msa0164540;Name=Msa0164540
chr1_4 mRNA 44036631 44039460 44036631 ID=Msa0164540-mRNA-1;Parent=Msa0164540;Name=Msa0164540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=221|1|1|1|1|1|3|410|216
chr1_4 exon 44036631 44037076 44036631 ID=Msa0164540-mRNA-1:exon:12592;Parent=Msa0164540-mRNA-1
chr1_4 exon 44037855 44038087 44037855 ID=Msa0164540-mRNA-1:exon:12593;Parent=Msa0164540-mRNA-1
chr1_4 exon 44038858 44039460 44038858 ID=Msa0164540-mRNA-1:exon:12594;Parent=Msa0164540-mRNA-1
chr1_4 five_prime_UTR 44036631 44036851 44036631 ID=Msa0164540-mRNA-1:five_prime_utr;Parent=Msa0164540-mRNA-1
chr1_4 CDS 44036852 44037076 44036852 ID=Msa0164540-mRNA-1:cds;Parent=Msa0164540-mRNA-1
chr1_4 CDS 44037855 44038087 44037855 ID=Msa0164540-mRNA-1:cds;Parent=Msa0164540-mRNA-1
chr1_4 CDS 44038858 44039050 44038858 ID=Msa0164540-mRNA-1:cds;Parent=Msa0164540-mRNA-1
chr1_4 three_prime_UTR 44039051 44039460 44039051 ID=Msa0164540-mRNA-1:three_prime_utr;Parent=Msa0164540-mRNA-1
Gene Sequence

>Msa0164540

ATGCTTGGCATGGGGTCCTTAACTTTGAGTTCACCAACTACAATGGTAGCTCAAACCACTCTTACCTCTTCCAAAAGGCACATCCTTTCTAACAGAACTCACTCTTTACCAATGAGTTTGGTCTCTCCCACAACCCAAAATTTCAAGAAACATAAACCTTTTATCACTGCTGTTTCTTCTGTTCAATCTGACAACGTTGGTTCTTCTGATGCTCCTGCCACCAAGAGTGAGTTCACCAAGTATTATTTTATTGTTGCAAATGCAAAATTTATGCTGGATGAGGAGGAGCATTTCCAAGAACAACTATTTGAACGCCGTCGCTACTATGGAGAGCGTAATAAAGAACAGGATTACTGGCTTGTCATTGAGCCTAAATTCTTGGATAGTTTTCCTGACTTTACCAAGAAACTGCGGAGGCCTGCTGTTGCTCTAGTGTCAACCAACGGTCCATGGATCACATTCATGAAATTAAGACTGGATCGAGTTTTATCAGGAAGTTTTGAAGCTGACAGCTTAGAAGAAGCATTAGCCTCCAATCCTACTAAGCTGGAATTTGAGAAGCCTGCAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGGAAACTTTCTTGCCTTCTGGACAGAAAGAGGTGAACTCTTAA

Protein sequence

>Msa0164540

MLGMGSLTLSSPTTMVAQTTLTSSKRHILSNRTHSLPMSLVSPTTQNFKKHKPFITAVSSVQSDNVGSSDAPATKSEFTKYYFIVANAKFMLDEEEHFQEQLFERRRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEVNS*