AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1389970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389970 MtrunA17_Chr8g0377961 86.278 532 17 2 1 476 1 532 0.0 927
Msa1389970 MtrunA17_Chr5g0407701 38.477 499 232 10 40 476 25 510 3.65e-101 319
Msa1389970 MtrunA17_Chr8g0369891 38.306 496 236 9 40 476 31 515 1.05e-100 318
Msa1389970 MtrunA17_Chr4g0026641 36.914 512 255 11 23 476 6 507 2.42e-89 288
Msa1389970 MtrunA17_Chr7g0262161 43.421 380 183 8 106 476 146 502 3.17e-89 288
Msa1389970 MtrunA17_Chr4g0057531 36.062 513 241 13 38 476 28 527 1.47e-85 279
Msa1389970 MtrunA17_Chr4g0037221 44.947 376 188 9 109 476 145 509 2.60e-85 278
Msa1389970 MtrunA17_Chr2g0285111 44.125 383 190 10 107 476 165 536 4.99e-84 275
Msa1389970 MtrunA17_Chr2g0300751 43.915 378 185 10 106 476 162 519 1.02e-82 271
Msa1389970 MtrunA17_Chr2g0285121 42.820 383 196 10 107 476 161 533 1.25e-82 271
Msa1389970 MtrunA17_Chr8g0354741 43.536 379 182 12 106 476 31 385 2.05e-82 267
Msa1389970 MtrunA17_Chr3g0120521 42.744 379 194 11 106 476 160 523 3.55e-82 270
Msa1389970 MtrunA17_Chr4g0053781 42.287 376 195 8 106 476 143 501 6.51e-82 268
Msa1389970 MtrunA17_Chr3g0136151 43.850 374 192 6 106 476 149 507 3.99e-81 266
Msa1389970 MtrunA17_Chr4g0057471 41.579 380 198 10 106 476 95 459 4.88e-81 265
Msa1389970 MtrunA17_Chr4g0057461 42.159 389 190 11 106 476 7 378 1.03e-80 263
Msa1389970 MtrunA17_Chr1g0152771 43.548 372 190 7 109 476 144 499 1.06e-80 265
Msa1389970 MtrunA17_Chr4g0057511 41.623 382 194 10 106 476 3 366 5.15e-80 260
Msa1389970 MtrunA17_Chr7g0246451 35.700 493 233 11 39 476 36 499 8.76e-80 263
Msa1389970 MtrunA17_Chr4g0020651 43.200 375 194 7 106 476 144 503 1.67e-79 262
Msa1389970 MtrunA17_Chr8g0354771 42.744 379 196 12 106 476 147 512 2.05e-79 262
Msa1389970 MtrunA17_Chr4g0076611 40.314 382 201 12 106 476 85 450 9.01e-78 256
Msa1389970 MtrunA17_Chr1g0204321 41.270 378 199 8 106 476 163 524 2.47e-77 257
Msa1389970 MtrunA17_Chr4g0057491 41.579 380 199 9 106 476 7 372 2.81e-77 253
Msa1389970 MtrunA17_Chr5g0401511 42.933 375 195 7 106 476 148 507 4.66e-77 256
Msa1389970 MtrunA17_Chr5g0423261 41.885 382 195 11 106 476 7 372 1.38e-76 251
Msa1389970 MtrunA17_Chr4g0057481 41.732 381 195 10 106 476 77 440 1.58e-75 250
Msa1389970 MtrunA17_Chr7g0266051 34.388 474 230 11 58 476 12 459 2.02e-74 248
Msa1389970 MtrunA17_Chr4g0070391 40.326 429 219 11 69 476 86 498 1.23e-73 246
Msa1389970 MtrunA17_Chr8g0351011 36.049 491 236 9 39 476 41 506 1.34e-73 246
Msa1389970 MtrunA17_Chr4g0035881 45.608 296 104 4 181 476 4 242 2.01e-73 234
Msa1389970 MtrunA17_Chr3g0143251 42.287 376 195 7 106 476 153 511 8.55e-73 244
Msa1389970 MtrunA17_Chr7g0261691 41.108 343 176 11 106 438 21 347 1.22e-72 233
Msa1389970 MtrunA17_Chr1g0189561 33.719 519 251 18 23 476 13 503 5.92e-71 239
Msa1389970 MtrunA17_Chr6g0470851 33.401 494 235 13 37 476 30 483 7.23e-71 239
Msa1389970 MtrunA17_Chr8g0376841 40.379 369 194 7 109 476 167 510 5.27e-70 233
Msa1389970 MtrunA17_Chr7g0227991 33.333 492 239 11 38 476 33 488 1.38e-68 233
Msa1389970 MtrunA17_Chr3g0143241 40.525 343 173 6 106 439 153 473 1.50e-68 228
Msa1389970 MtrunA17_Chr7g0248871 32.136 529 258 16 22 476 8 509 1.62e-68 233
Msa1389970 MtrunA17_Chr6g0470881 33.266 493 237 12 37 476 30 483 4.07e-68 231
Msa1389970 MtrunA17_Chr8g0344971 38.182 440 215 13 56 476 99 500 1.86e-67 230
Msa1389970 MtrunA17_Chr4g0057061 40.533 375 186 10 109 476 185 529 1.55e-66 228
Msa1389970 MtrunA17_Chr8g0334521 32.308 520 250 15 17 476 11 488 1.55e-66 227
Msa1389970 MtrunA17_Chr1g0146251 33.803 497 234 14 38 476 31 490 1.87e-66 227
Msa1389970 MtrunA17_Chr1g0170081 32.927 492 241 10 38 476 31 486 2.11e-66 226
Msa1389970 MtrunA17_Chr7g0248861 39.153 378 197 11 106 476 160 511 5.78e-66 227
Msa1389970 MtrunA17_Chr7g0248861 50.442 226 92 8 106 326 650 860 7.91e-50 182
Msa1389970 MtrunA17_Chr3g0079971 33.140 516 244 15 23 477 9 484 1.44e-65 224
Msa1389970 MtrunA17_Chr8g0344331 40.108 369 185 9 122 476 173 519 2.90e-65 224
Msa1389970 MtrunA17_Chr1g0146271 32.657 493 243 11 38 476 31 488 2.97e-65 223
Msa1389970 MtrunA17_Chr5g0398241 41.711 374 185 9 109 476 163 509 6.24e-65 223
Msa1389970 MtrunA17_Chr7g0250481 30.957 533 252 16 44 476 32 548 8.87e-65 223
Msa1389970 MtrunA17_Chr8g0334491 33.333 501 233 16 38 476 29 490 2.04e-64 221
Msa1389970 MtrunA17_Chr3g0134621 38.978 372 178 8 109 476 150 476 3.80e-64 221
Msa1389970 MtrunA17_Chr5g0398401 41.444 374 186 9 109 476 163 509 7.81e-64 220
Msa1389970 MtrunA17_Chr4g0026651 51.364 220 99 4 106 325 92 303 7.13e-63 207
Msa1389970 MtrunA17_Chr1g0189251 38.070 373 201 7 106 476 156 500 8.38e-63 217
Msa1389970 MtrunA17_Chr8g0345971 39.370 381 188 9 106 476 157 504 1.10e-62 217
Msa1389970 MtrunA17_Chr8g0345981 39.842 379 195 11 106 476 150 503 1.30e-62 217
Msa1389970 MtrunA17_Chr7g0276151 38.667 375 196 9 106 476 156 500 4.05e-62 216
Msa1389970 MtrunA17_Chr5g0398331 40.476 378 182 12 109 476 162 506 4.16e-62 215
Msa1389970 MtrunA17_Chr5g0398351 41.287 373 187 10 109 476 144 489 4.96e-62 219
Msa1389970 MtrunA17_Chr5g0398351 40.800 375 187 11 109 476 914 1260 2.16e-61 217
Msa1389970 MtrunA17_Chr7g0250411 36.990 392 212 14 106 476 157 534 1.38e-61 214
Msa1389970 MtrunA17_Chr8g0345991 39.108 381 193 13 106 476 148 499 1.69e-60 211
Msa1389970 MtrunA17_Chr3g0097061 45.324 278 120 7 106 379 52 301 4.61e-60 203
Msa1389970 MtrunA17_Chr7g0246461 37.366 372 180 11 109 476 162 484 6.34e-60 209
Msa1389970 MtrunA17_Chr5g0398311 41.379 377 176 12 109 476 162 502 4.27e-59 207
Msa1389970 MtrunA17_Chr7g0250391 35.323 402 205 13 106 476 156 533 6.01e-58 204
Msa1389970 MtrunA17_Chr7g0250461 38.339 313 171 9 106 408 157 457 2.31e-56 194
Msa1389970 MtrunA17_Chr7g0250371 34.826 402 208 12 106 476 157 535 2.58e-56 200
Msa1389970 MtrunA17_Chr3g0105461 42.671 307 136 11 38 322 30 318 8.80e-56 189
Msa1389970 MtrunA17_Chr2g0301911 35.598 368 196 10 113 476 28 358 1.65e-55 189
Msa1389970 MtrunA17_Chr8g0345961 42.345 307 136 9 106 403 146 420 1.16e-54 195
Msa1389970 MtrunA17_Chr7g0250331 34.878 410 218 12 106 476 157 556 3.55e-54 194
Msa1389970 MtrunA17_Chr5g0439271 37.989 358 191 10 139 476 8 354 1.82e-51 184
Msa1389970 MtrunA17_Chr6g0480721 41.045 268 129 7 76 331 40 290 3.25e-51 184
Msa1389970 MtrunA17_Chr2g0303881 37.760 384 196 10 106 476 120 473 1.49e-49 180
Msa1389970 MtrunA17_Chr8g0346361 47.465 217 84 6 114 328 3 191 2.73e-49 176
Msa1389970 MtrunA17_Chr2g0301011 35.657 373 166 12 106 476 52 352 1.54e-48 174
Msa1389970 MtrunA17_Chr2g0312841 46.117 206 86 4 114 319 8 188 9.29e-48 163
Msa1389970 MtrunA17_Chr3g0103071 36.400 250 149 5 232 476 1 245 2.98e-41 149
Msa1389970 MtrunA17_Chr2g0298601 31.865 386 223 15 111 468 178 551 2.71e-36 142
Msa1389970 MtrunA17_Chr5g0447171 40.789 228 108 7 264 476 9 224 4.28e-35 137
Msa1389970 MtrunA17_Chr5g0434941 82.432 74 13 0 237 310 1 74 5.08e-33 120
Msa1389970 MtrunA17_Chr5g0436021 44.318 176 80 5 140 315 31 188 1.86e-31 119
Msa1389970 MtrunA17_Chr4g0071871 29.337 392 231 14 108 468 175 551 1.13e-29 123
Msa1389970 MtrunA17_Chr4g0075331 33.582 268 158 8 120 377 109 366 1.59e-29 122
Msa1389970 MtrunA17_Chr2g0302951 33.094 278 169 7 109 377 193 462 3.97e-29 121
Msa1389970 MtrunA17_Chr3g0142981 44.068 177 58 4 170 335 48 194 1.54e-28 112
Msa1389970 MtrunA17_Chr8g0380961 32.453 265 165 6 119 377 214 470 2.56e-27 115
Msa1389970 MtrunA17_Chr3g0103061 42.982 114 55 2 106 219 157 260 6.49e-25 103
Msa1389970 MtrunA17_Chr2g0301021 30.471 361 163 14 38 377 31 324 6.79e-25 105
Msa1389970 MtrunA17_Chr4g0035871 51.667 60 27 1 48 105 1 60 1.79e-12 65.1
Msa1389970 MtrunA17_Chr1g0171421 44.776 67 34 1 40 106 44 107 4.67e-12 63.2
Msa1389970 MtrunA17_Chr3g0143011 46.774 62 33 0 276 337 3 64 5.39e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389970 AT1G32940.3 46.521 503 201 10 37 476 23 520 8.63e-141 417
Msa1389970 AT1G32940.1 46.521 503 201 10 37 476 23 520 6.71e-139 418
Msa1389970 AT1G32960.1 45.726 503 205 11 37 476 26 523 3.48e-136 411
Msa1389970 AT4G10530.1 43.186 521 220 12 19 477 1 507 7.07e-132 399
Msa1389970 AT4G10520.1 43.750 512 210 11 24 476 10 502 8.26e-132 399
Msa1389970 AT4G10550.1 42.967 519 227 11 23 476 11 525 2.33e-130 396
Msa1389970 AT4G10550.3 43.385 514 220 12 29 476 33 541 2.79e-129 394
Msa1389970 AT4G10540.1 42.430 502 223 9 37 476 24 521 2.22e-127 388
Msa1389970 AT4G10510.3 42.830 530 232 14 10 476 2 523 1.81e-126 386
Msa1389970 AT4G10510.1 43.636 495 213 11 43 476 22 511 1.14e-125 384
Msa1389970 AT1G32950.1 42.337 522 228 10 20 476 6 519 5.43e-121 372
Msa1389970 AT4G10550.4 43.249 474 201 11 66 476 1 469 7.17e-118 362
Msa1389970 AT4G10550.2 43.249 474 201 11 66 476 1 469 7.17e-118 362
Msa1389970 AT1G32940.4 51.058 378 173 8 106 476 97 469 2.55e-117 361
Msa1389970 AT1G32940.2 51.058 378 173 8 106 476 97 469 2.55e-117 361
Msa1389970 AT1G66220.1 40.918 523 227 12 17 476 6 509 1.19e-114 355
Msa1389970 AT1G32950.2 43.067 476 198 10 66 476 1 468 5.20e-109 339
Msa1389970 AT5G11940.1 38.447 515 241 6 19 476 13 508 2.59e-108 338
Msa1389970 AT4G10510.2 47.340 376 188 8 106 476 82 452 5.15e-108 336
Msa1389970 AT4G10510.4 47.340 376 188 8 106 476 97 467 1.07e-107 336
Msa1389970 AT1G32970.1 40.164 488 254 11 19 476 1 480 1.04e-105 331
Msa1389970 AT4G21650.1 41.176 510 201 11 38 476 36 517 6.25e-105 330
Msa1389970 AT1G66210.1 39.839 497 224 10 37 476 34 512 6.36e-105 330
Msa1389970 AT4G21630.1 45.600 375 170 8 106 476 166 510 8.11e-93 298
Msa1389970 AT4G21630.1 42.735 117 58 3 9 121 2 113 2.80e-18 88.6
Msa1389970 AT4G21323.1 44.267 375 182 9 105 476 200 550 1.42e-90 293
Msa1389970 AT4G21323.1 43.750 64 36 0 43 106 80 143 1.71e-11 67.0
Msa1389970 AT1G04110.1 43.194 382 186 10 106 476 152 513 4.46e-86 280
Msa1389970 AT1G20160.3 43.351 376 190 9 106 476 151 508 9.66e-86 274
Msa1389970 AT1G20160.2 42.819 376 192 9 106 476 112 469 2.51e-84 275
Msa1389970 AT1G20160.1 43.351 376 190 9 106 476 151 508 6.34e-84 275
Msa1389970 AT4G34980.1 38.877 463 246 10 36 476 52 499 7.34e-84 274
Msa1389970 AT4G21640.1 42.175 377 150 8 106 476 170 484 5.12e-82 269
Msa1389970 AT4G21640.1 43.220 118 58 3 8 121 3 115 1.15e-18 89.7
Msa1389970 AT2G05920.1 44.000 375 189 8 106 476 140 497 3.75e-80 264
Msa1389970 AT5G03620.2 34.000 500 233 11 44 476 35 504 7.71e-79 256
Msa1389970 AT4G21326.1 40.323 372 198 5 106 476 97 445 1.81e-78 258
Msa1389970 AT5G67360.1 42.328 378 192 9 106 476 145 503 8.00e-78 258
Msa1389970 AT2G04160.1 40.849 377 204 8 106 476 159 522 3.65e-77 256
Msa1389970 AT5G03620.1 34.000 500 233 11 44 476 35 504 5.95e-77 256
Msa1389970 AT1G20150.1 39.529 382 198 9 106 476 153 512 1.17e-76 255
Msa1389970 AT3G14067.1 37.474 475 218 12 62 476 52 507 2.91e-76 254
Msa1389970 AT4G26330.2 42.895 380 193 13 106 476 103 467 5.21e-76 253
Msa1389970 AT5G45650.2 40.470 383 207 10 106 476 166 539 5.65e-76 254
Msa1389970 AT5G45650.1 40.470 383 207 10 106 476 166 539 5.65e-76 254
Msa1389970 AT4G26330.1 42.895 380 193 13 106 476 117 481 6.77e-76 253
Msa1389970 AT1G01900.1 43.127 371 190 10 109 476 161 513 3.72e-74 249
Msa1389970 AT5G51750.1 40.318 377 204 7 106 476 160 521 5.41e-74 248
Msa1389970 AT3G14240.1 37.613 444 225 13 56 476 96 510 9.47e-74 248
Msa1389970 AT5G59810.1 39.153 378 205 9 106 476 169 528 9.90e-70 237
Msa1389970 AT4G00230.2 34.959 492 241 10 38 476 32 497 1.68e-68 229
Msa1389970 AT5G59090.3 33.740 492 235 11 38 476 27 480 1.54e-67 230
Msa1389970 AT5G59130.1 31.361 507 250 13 23 476 17 478 2.27e-67 229
Msa1389970 AT4G00230.1 34.959 492 241 10 38 476 32 497 3.70e-67 229
Msa1389970 AT5G59190.1 33.750 480 223 12 51 476 6 444 3.65e-66 226
Msa1389970 AT4G15040.2 34.238 479 215 14 51 475 7 439 2.23e-64 221
Msa1389970 AT4G15040.1 34.238 479 215 14 51 475 7 439 2.23e-64 221
Msa1389970 AT5G59090.2 38.172 372 192 9 106 476 148 482 5.27e-63 218
Msa1389970 AT5G59090.1 38.172 372 192 9 106 476 148 482 5.83e-63 218
Msa1389970 AT5G45640.1 38.764 356 196 10 106 451 136 479 4.29e-62 216
Msa1389970 AT5G59120.1 38.441 372 191 10 106 476 147 481 2.49e-61 213
Msa1389970 AT5G59130.3 35.294 374 197 10 106 476 112 443 2.61e-61 213
Msa1389970 AT3G46850.1 39.050 379 186 13 106 476 149 490 3.35e-61 213
Msa1389970 AT5G59130.4 35.294 374 197 10 106 476 151 482 3.78e-61 213
Msa1389970 AT5G59100.1 32.724 492 237 14 43 476 34 489 7.59e-61 212
Msa1389970 AT3G46840.1 37.895 380 188 11 106 476 150 490 6.46e-60 209
Msa1389970 AT5G58830.1 38.172 372 168 11 106 476 149 459 4.53e-59 207
Msa1389970 AT5G67090.1 37.337 383 195 10 107 476 140 490 6.27e-58 204
Msa1389970 AT5G58840.2 36.559 372 175 13 106 477 151 461 7.91e-58 198
Msa1389970 AT5G59130.2 35.467 375 185 11 106 476 151 472 1.66e-57 202
Msa1389970 AT5G58820.1 32.863 496 211 15 39 476 25 456 6.29e-57 201
Msa1389970 AT5G58840.3 36.388 371 175 13 106 476 151 460 1.28e-56 197
Msa1389970 AT5G58840.1 36.388 371 175 13 106 476 151 460 1.49e-55 197
Msa1389970 AT5G44530.3 35.088 285 154 10 109 377 189 458 9.17e-37 143
Msa1389970 AT5G44530.1 35.088 285 154 10 109 377 189 458 2.85e-36 143
Msa1389970 AT5G44530.2 35.088 285 154 10 109 377 189 458 3.43e-36 143
Msa1389970 AT1G30600.1 32.487 394 216 15 109 467 181 559 5.36e-36 142
Msa1389970 AT4G20430.3 33.835 266 163 6 118 377 215 473 1.98e-34 137
Msa1389970 AT4G20430.1 33.835 266 163 6 118 377 215 473 1.98e-34 137
Msa1389970 AT4G20430.2 37.168 226 121 6 118 334 215 428 2.32e-33 134
Msa1389970 AT2G39850.1 29.968 317 142 8 63 319 47 343 3.73e-32 130
Msa1389970 AT2G19170.1 29.563 389 236 13 108 469 171 548 3.01e-31 128
Msa1389970 AT2G19170.2 29.563 389 236 13 108 469 171 548 3.01e-31 128
Msa1389970 AT4G30020.3 30.280 393 212 14 116 469 180 549 1.01e-30 126
Msa1389970 AT4G30020.1 30.280 393 212 14 116 469 180 549 1.01e-30 126
Msa1389970 AT4G30020.4 30.280 393 212 14 116 469 180 549 1.01e-30 126
Msa1389970 AT4G30020.2 30.280 393 212 14 116 469 180 549 1.01e-30 126
Msa1389970 AT1G62340.1 30.052 386 223 14 122 473 202 574 3.70e-29 122

Find 183 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTTCAGCTGGAAATTC+TGG 0.217907 tig0021306:-56001 Msa1389970:CDS
CAAAGACTGTTATAGGAAAA+TGG 0.220891 tig0021306:-54893 Msa1389970:CDS
CATCATAACCTGCACTCTTC+TGG 0.222371 tig0021306:-54288 Msa1389970:three_prime_UTR
TGGAACCTTCTTCTGATATA+AGG 0.236585 tig0021306:+53612 None:intergenic
AGCACCCGGTGTGGACATTT+TGG 0.276373 tig0021306:-54235 Msa1389970:three_prime_UTR
TTCGAAACGGTTTGAGAAAT+AGG 0.281095 tig0021306:+55977 None:intergenic
TCACCTTGCTCTTCTAATAT+AGG 0.283071 tig0021306:+55030 None:intergenic
CTTCAGGTTTGGAATTGATA+TGG 0.287368 tig0021306:+53373 None:intergenic
AATTATAGAGGCCTTGCTTC+TGG 0.298733 tig0021306:-56262 Msa1389970:CDS
TGAATATTAAACCGATGTTT+TGG 0.302345 tig0021306:-53087 Msa1389970:three_prime_UTR
AGAAGAAGGTTCCACAAATA+AGG 0.303939 tig0021306:-53603 Msa1389970:three_prime_UTR
TTGCATGGTGATTACAGATT+TGG 0.307057 tig0021306:-53176 Msa1389970:three_prime_UTR
CCTGCATTGATTGCTTTGTT+AGG 0.315288 tig0021306:+53542 None:intergenic
GTTGCAACTTGTAGTGGTTT+TGG 0.315811 tig0021306:+53436 None:intergenic
GATCTTCTTGTTACAGTTTG+TGG 0.325361 tig0021306:+56441 None:intergenic
ACCTTAAAATTCTTACTTGT+AGG 0.328245 tig0021306:-54794 Msa1389970:three_prime_UTR
AGTGGATTCATATTCTTATC+TGG 0.334970 tig0021306:-54180 Msa1389970:three_prime_UTR
TGCCATATCTGTAGTATTGT+AGG 0.339455 tig0021306:-54551 Msa1389970:three_prime_UTR
TTACTGTTGTATGACTCTTC+AGG 0.345235 tig0021306:+53357 None:intergenic
GCTATAGTGAATAGTCCTTA+TGG 0.348636 tig0021306:-53290 Msa1389970:three_prime_UTR
ATCACAGTTGTTTCTTCAGC+TGG 0.356297 tig0021306:-56010 Msa1389970:CDS
TGTTACCAAAGCTGATCTTA+TGG 0.357629 tig0021306:+54080 None:intergenic
GATTGCCATCTGTCCATGTT+AGG 0.364733 tig0021306:+53150 None:intergenic
CAAAATGTTATCTTCACTCT+TGG 0.369107 tig0021306:-57491 Msa1389970:CDS
GGTGCTAGATGGTTCCTAAA+AGG 0.369584 tig0021306:-56415 Msa1389970:CDS
GTTGTATGACTCTTCAGGTT+TGG 0.378921 tig0021306:+53362 None:intergenic
TACTTGCTATATCTTCTGCT+TGG 0.382876 tig0021306:+57295 None:intergenic
TGGAAATAACCTTACTTTGT+GGG 0.383187 tig0021306:-55885 Msa1389970:intron
TGGTATACTTCCGTGCATTA+AGG 0.383715 tig0021306:-55083 Msa1389970:CDS
TAGATGATGGAAACTAATTC+AGG 0.386421 tig0021306:-57794 Msa1389970:CDS
GACCCATGGAACATAGGAAT+TGG 0.390726 tig0021306:+53486 None:intergenic
AAAAGTAAATAGAGAATTGT+TGG 0.392588 tig0021306:-54724 Msa1389970:three_prime_UTR
GGCTATACCTTTAGCACAGT+TGG 0.393179 tig0021306:+54819 None:intergenic
TGAAATGAAGCTTACGTTGA+AGG 0.396560 tig0021306:+53208 None:intergenic
TGGCTATCTACAAAGCTTGC+TGG 0.398566 tig0021306:-56207 Msa1389970:CDS
GGTTTAATATTCAAATTGTA+TGG 0.400861 tig0021306:+53097 None:intergenic
GCAGCAGACCCATTTGATAT+CGG 0.401613 tig0021306:-53581 Msa1389970:three_prime_UTR
CAAACTCCTTTCCACTTGGA+TGG 0.402536 tig0021306:+56487 None:intergenic
ATCCTACAATACTACAGATA+TGG 0.403560 tig0021306:+54549 None:intergenic
GATGTCTTAACTGTTTCTCT+TGG 0.405379 tig0021306:-56112 Msa1389970:CDS
ATCATAACCTGCACTCTTCT+GGG 0.407128 tig0021306:-54287 Msa1389970:three_prime_UTR
TGAGGATACCAATAGCTGTT+AGG 0.408815 tig0021306:-53121 Msa1389970:three_prime_UTR
TTAACTGTTTCTCTTGGCAT+TGG 0.414235 tig0021306:-56106 Msa1389970:CDS
ACTTGCTATATCTTCTGCTT+GGG 0.417096 tig0021306:+57296 None:intergenic
TGAAGTAAGGATTGTCAGTC+TGG 0.419249 tig0021306:-55259 Msa1389970:intron
GATTCTTCTGCAAATATCTC+GGG 0.427428 tig0021306:+57695 None:intergenic
TTGGAAATAACCTTACTTTG+TGG 0.427732 tig0021306:-55886 Msa1389970:CDS
GAATTGAAGTTCAAAATTTG+AGG 0.429380 tig0021306:+53248 None:intergenic
TGTATGGTCCTAACAGCTAT+TGG 0.434313 tig0021306:+53113 None:intergenic
TTTCCAAGTGTAATGGCTGT+TGG 0.435517 tig0021306:+55902 None:intergenic
ACTAAATAAATGTCTATTTG+AGG 0.435647 tig0021306:-54391 Msa1389970:three_prime_UTR
AGAAACAACTGTGATACCTT+TGG 0.439366 tig0021306:+56018 None:intergenic
AACACTCTCTTGGATTTGTC+GGG 0.440791 tig0021306:-55769 Msa1389970:CDS
AGGTGACCAAGTTGGGTGTT+TGG 0.442891 tig0021306:+54107 None:intergenic
AAACACTCTCTTGGATTTGT+CGG 0.443935 tig0021306:-55770 Msa1389970:CDS
CAGCAGACCCATTTGATATC+GGG 0.446942 tig0021306:-53580 Msa1389970:three_prime_UTR
GTTATATATTGCTTCTCTGC+TGG 0.448106 tig0021306:+54443 None:intergenic
TATCCAATTCCTATGTTCCA+TGG 0.450910 tig0021306:-53489 Msa1389970:three_prime_UTR
GACAATGGAAAACACTCTCT+TGG 0.450936 tig0021306:-55779 Msa1389970:CDS
CTTGTCTCCAACTGTGCTAA+AGG 0.451379 tig0021306:-54826 Msa1389970:CDS
AGAAGATCATTGGTGCTAGA+TGG 0.451764 tig0021306:-56426 Msa1389970:CDS
GATGAGAAAGATGCAACTCT+TGG 0.452575 tig0021306:+54864 None:intergenic
TGCAGCCATAAGATCAGCTT+TGG 0.453854 tig0021306:-54085 Msa1389970:three_prime_UTR
AAAATGTTATCTTCACTCTT+GGG 0.457809 tig0021306:-57490 Msa1389970:CDS
AGATCAGCTTTGGTAACAAC+AGG 0.460348 tig0021306:-54075 Msa1389970:intron
CAAATTTCAGAAACATGATC+TGG 0.462072 tig0021306:+54752 None:intergenic
CTGTAGTGTCATTGTTTCCA+AGG 0.462626 tig0021306:+56365 None:intergenic
GCATCAGTACAGTGTCCAAC+AGG 0.464038 tig0021306:+56178 None:intergenic
AAGGTTATTTCCAAGTGTAA+TGG 0.464304 tig0021306:+55895 None:intergenic
ATTAAGGTAGATTATGAAGC+AGG 0.465394 tig0021306:-55067 Msa1389970:CDS
TTGATATGGAAGGAAGGTTA+AGG 0.465571 tig0021306:+53387 None:intergenic
AACTGTAACAAGAAGATCAT+TGG 0.465970 tig0021306:-56436 Msa1389970:CDS
CAACGCGACACGATAGCAAT+TGG 0.470243 tig0021306:-56058 Msa1389970:CDS
GTAAAGGAAGCTGGTGGAGT+TGG 0.470952 tig0021306:-55148 Msa1389970:CDS
GCCTCTCAAAGCGGAACTGA+TGG 0.471189 tig0021306:-53638 Msa1389970:three_prime_UTR
CTAGGTGCATATTGTATACA+TGG 0.473758 tig0021306:-57560 Msa1389970:intron
TGGCTGCAGGTGACCAAGTT+GGG 0.475861 tig0021306:+54100 None:intergenic
TGTAGCATACCCACAAAGTA+AGG 0.480458 tig0021306:+55876 None:intergenic
TGATTCTTCTGCAAATATCT+CGG 0.481072 tig0021306:+57694 None:intergenic
CACACTAAGAACCTCATCCT+TGG 0.483752 tig0021306:-56382 Msa1389970:CDS
TGGAAAGGAGTTTGTCAAGT+TGG 0.485654 tig0021306:-56478 Msa1389970:CDS
GTAGAAAATGCAAATTATAG+AGG 0.487178 tig0021306:-56274 Msa1389970:CDS
CTCTCAGCTAGAGATGCTAT+TGG 0.487608 tig0021306:-56337 Msa1389970:CDS
TGTCATTGTTTCCAAGGATG+AGG 0.488136 tig0021306:+56371 None:intergenic
TATGCACAGCGTCATGAAGA+TGG 0.492726 tig0021306:-55118 Msa1389970:CDS
TTGACAAACTCCTTTCCACT+TGG 0.494530 tig0021306:+56483 None:intergenic
AAACAAGAGATGTGCTAGAA+AGG 0.497886 tig0021306:-57771 Msa1389970:CDS
CACACAGCTTCAACAGCAGC+TGG 0.497918 tig0021306:-56304 Msa1389970:CDS
GAATTGGATATAATCCTTTG+TGG 0.499516 tig0021306:+53502 None:intergenic
TTCTGCAGCACTTACAGTAA+AGG 0.500122 tig0021306:-55164 Msa1389970:CDS
GAGAAATTCGATTTGAGTGA+AGG 0.501642 tig0021306:-54420 Msa1389970:three_prime_UTR
TAAAATCCAAACACCCAACT+TGG 0.501966 tig0021306:-54113 Msa1389970:three_prime_UTR
TAGCCATGTCAAATGCTTTG+AGG 0.503512 tig0021306:+56149 None:intergenic
ACACCGGGTGCTGCTATGTC+CGG 0.508908 tig0021306:+54246 None:intergenic
TTTAGAAAGAAAAGCACAAT+CGG 0.510868 tig0021306:-54692 Msa1389970:three_prime_UTR
GGCTATCTACAAAGCTTGCT+GGG 0.512176 tig0021306:-56206 Msa1389970:CDS
AAAGCTGATCTTATGGCTGC+AGG 0.512788 tig0021306:+54087 None:intergenic
AGGAGCACCTTTAGCTCACT+TGG 0.515626 tig0021306:-56227 Msa1389970:CDS
GATCAACATACGAAAACAAA+GGG 0.515737 tig0021306:+56080 None:intergenic
ATGTCTTGTCCTCATGTGGC+AGG 0.515904 tig0021306:-54150 Msa1389970:three_prime_UTR
TGGGTCTGCTGCCTTATTTG+TGG 0.516001 tig0021306:+53592 None:intergenic
TAAATAGAGAATTGTTGGCT+AGG 0.518532 tig0021306:-54719 Msa1389970:three_prime_UTR
TTTCCAACAGCCATTACACT+TGG 0.522045 tig0021306:-55905 Msa1389970:CDS
ATTAGAATCAAATAAGATTG+TGG 0.524670 tig0021306:-52975 Msa1389970:three_prime_UTR
ATCCAATTCCTATGTTCCAT+GGG 0.525074 tig0021306:-53488 Msa1389970:three_prime_UTR
CCATGGTGCTGTATTCGAAA+CGG 0.533211 tig0021306:+55964 None:intergenic
AGTTTCAATGATGAAGCAAT+GGG 0.533726 tig0021306:-56517 Msa1389970:CDS
TAGATAGCCAAGTGAGCTAA+AGG 0.534407 tig0021306:+56220 None:intergenic
ATTTCAACTCAAAAGTTGCA+TGG 0.536725 tig0021306:-53191 Msa1389970:three_prime_UTR
CTGAATGAAACAATGGCAGC+AGG 0.538323 tig0021306:-55232 Msa1389970:CDS
GCTTGCTGGGACGTTCCTGT+TGG 0.538433 tig0021306:-56193 Msa1389970:CDS
CTTCTTTATAGCTATAAACA+TGG 0.540098 tig0021306:-57351 Msa1389970:CDS
GCTAGAGATGCTATTGGCCA+TGG 0.541370 tig0021306:-56331 Msa1389970:CDS
CGGTAGTTAAGTATTCTTTG+AGG 0.541415 tig0021306:-53005 Msa1389970:three_prime_UTR
GGAAAACTCAGCCTTGCAGT+TGG 0.542209 tig0021306:+54915 None:intergenic
TATTATGACCCATGGAACAT+AGG 0.542775 tig0021306:+53480 None:intergenic
TTGTTTGTTGCAACTTGTAG+TGG 0.543136 tig0021306:+53430 None:intergenic
GAAAGAAAAGCACAATCGGC+CGG 0.543470 tig0021306:-54688 Msa1389970:three_prime_UTR
CTTTAGCACAGTTGGAGACA+AGG 0.546000 tig0021306:+54827 None:intergenic
TTGGAATTGATATGGAAGGA+AGG 0.546129 tig0021306:+53381 None:intergenic
TCCATCAGTTCCGCTTTGAG+AGG 0.546581 tig0021306:+53637 None:intergenic
TGGATCACGTGCAATGCGCT+CGG 0.546600 tig0021306:+55736 None:intergenic
CTTGCTTCTGGTTTAGCAAG+AGG 0.547357 tig0021306:-56250 Msa1389970:CDS
ATTTGGATTAAGTCTAACTC+AGG 0.549093 tig0021306:-54589 Msa1389970:three_prime_UTR
TCTTTCCACGCAACTTCCAA+AGG 0.554837 tig0021306:-56034 Msa1389970:CDS
CAATTGTTTAAACTAATAGC+CGG 0.555060 tig0021306:+54669 None:intergenic
ATGGCTGCAGGTGACCAAGT+TGG 0.555589 tig0021306:+54099 None:intergenic
TTTGGCTGCATTTCCACCCA+AGG 0.561186 tig0021306:-54217 Msa1389970:three_prime_UTR
AAGTTTCAATGATGAAGCAA+TGG 0.562500 tig0021306:-56518 Msa1389970:CDS
GCACTTACAGTAAAGGAAGC+TGG 0.562837 tig0021306:-55157 Msa1389970:CDS
AGGTTTGGAATTGATATGGA+AGG 0.568145 tig0021306:+53377 None:intergenic
TTGAAGCTGTGTGAGTTCCA+TGG 0.569128 tig0021306:+56314 None:intergenic
GCTGTCTACTGATTAGATGA+TGG 0.570869 tig0021306:-57807 Msa1389970:exon
GCTTCTGGTTTAGCAAGAGG+AGG 0.571874 tig0021306:-56247 Msa1389970:CDS
TGTTATCTTCACTCTTGGGA+AGG 0.572999 tig0021306:-57486 Msa1389970:intron
AGTCATTCCCAGAAGAGTGC+AGG 0.576947 tig0021306:+54280 None:intergenic
TGGATTAAGTCTAACTCAGG+TGG 0.577147 tig0021306:-54586 Msa1389970:three_prime_UTR
ACAGTTGGAGACAAGGTACT+AGG 0.581400 tig0021306:+54834 None:intergenic
GGAGGCCTTATATCAGAAGA+AGG 0.582543 tig0021306:-53617 Msa1389970:three_prime_UTR
CCTAACAAAGCAATCAATGC+AGG 0.582803 tig0021306:-53542 Msa1389970:three_prime_UTR
GTTGCATCTTTCTCATCTAG+AGG 0.585537 tig0021306:-54858 Msa1389970:CDS
GCGCATTGCACGTGATCCAT+CGG 0.586568 tig0021306:-55732 Msa1389970:CDS
AGCAGACCCATTTGATATCG+GGG 0.587889 tig0021306:-53579 Msa1389970:three_prime_UTR
AGATGCTGTATTATGACCCA+TGG 0.590460 tig0021306:+53472 None:intergenic
ACTCTTCTGGGAATGACTGA+TGG 0.591993 tig0021306:-54275 Msa1389970:three_prime_UTR
TCTCAAAGCGGAACTGATGG+AGG 0.593016 tig0021306:-53635 Msa1389970:three_prime_UTR
CAAACTAATTGCCAAAACAT+CGG 0.597237 tig0021306:+53076 None:intergenic
GAATGACTGATGGAAATAGC+CGG 0.598458 tig0021306:-54265 Msa1389970:three_prime_UTR
ATCAATGTCTTGTCCTCATG+TGG 0.603786 tig0021306:-54154 Msa1389970:three_prime_UTR
AAAATTCCATCCAAGTGGAA+AGG 0.604125 tig0021306:-56493 Msa1389970:CDS
TGCAGCCAAAATGTCCACAC+CGG 0.604840 tig0021306:+54230 None:intergenic
ACCATGGCTCATTACAGTTG+CGG 0.605785 tig0021306:-55948 Msa1389970:CDS
GGAAGCCTAACATGGACAGA+TGG 0.610473 tig0021306:-53155 Msa1389970:three_prime_UTR
ACAGATTTGGAAGCCTAACA+TGG 0.611247 tig0021306:-53163 Msa1389970:three_prime_UTR
TTGGCTGCATTTCCACCCAA+GGG 0.612405 tig0021306:-54216 Msa1389970:three_prime_UTR
CAGGGACAGTCCATTGACAA+TGG 0.614731 tig0021306:-55794 Msa1389970:CDS
GTGGAAGGTTTCCAACTGCA+AGG 0.614861 tig0021306:-54926 Msa1389970:intron
TGATCAACATACGAAAACAA+AGG 0.622316 tig0021306:+56079 None:intergenic
CTCTTGCTAAACCAGAAGCA+AGG 0.626020 tig0021306:+56251 None:intergenic
ATTCTTCTGCAAATATCTCG+GGG 0.626292 tig0021306:+57696 None:intergenic
TAACCTATATTAGAAGAGCA+AGG 0.627264 tig0021306:-55033 Msa1389970:intron
TTAAGGTAGATTATGAAGCA+GGG 0.632035 tig0021306:-55066 Msa1389970:CDS
TTGCGGCCACTACAATCGAT+AGG 0.633312 tig0021306:-55931 Msa1389970:CDS
TCATAATCTACCTTAATGCA+CGG 0.633313 tig0021306:+55073 None:intergenic
TAGCCGGACATAGCAGCACC+CGG 0.633717 tig0021306:-54249 Msa1389970:three_prime_UTR
ATGAGAACAGTGACAAACGT+TGG 0.635977 tig0021306:-53335 Msa1389970:three_prime_UTR
GCAGCCAAAATGTCCACACC+GGG 0.637864 tig0021306:+54231 None:intergenic
GCTGCTATTCCTGCCACATG+AGG 0.638035 tig0021306:+54141 None:intergenic
GGACATAGCAGCACCCGGTG+TGG 0.639225 tig0021306:-54244 Msa1389970:three_prime_UTR
TGGAAGTCTGAATGAAACAA+TGG 0.642638 tig0021306:-55239 Msa1389970:CDS
CATATACAACATTACCACAA+AGG 0.649217 tig0021306:-53516 Msa1389970:three_prime_UTR
TGATACCTTTGGAAGTTGCG+TGG 0.649399 tig0021306:+56029 None:intergenic
AAAAGTCCTATCGATTGTAG+TGG 0.654640 tig0021306:+55925 None:intergenic
TCTCACGCTAAATCATCCGA+TGG 0.656781 tig0021306:+55716 None:intergenic
GCAGACCCATTTGATATCGG+GGG 0.659152 tig0021306:-53578 Msa1389970:three_prime_UTR
TAGGTGCATATTGTATACAT+GGG 0.667259 tig0021306:-57559 Msa1389970:CDS
GCCGCAACTGTAATGAGCCA+TGG 0.676151 tig0021306:+55947 None:intergenic
TATCCTCAAAGCATTTGACA+TGG 0.678885 tig0021306:-56152 Msa1389970:CDS
AAAAGTGCAGCCTCTCAAAG+CGG 0.681198 tig0021306:-53647 Msa1389970:intron
CTTACAGTAAAGGAAGCTGG+TGG 0.703562 tig0021306:-55154 Msa1389970:CDS
GAAGATGGACTCAATGAATG+TGG 0.703870 tig0021306:-55103 Msa1389970:CDS
TTTGACATGGCTATACACGA+TGG 0.741019 tig0021306:-56139 Msa1389970:CDS
CCGTTTCGAATACAGCACCA+TGG 0.744343 tig0021306:-55964 Msa1389970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATGTAATGATAATTATT+AGG + tig0021306:53339-53358 None:intergenic 10.0%
!! AAAAAATATTATTATGTCAA+CGG + tig0021306:55250-55269 None:intergenic 10.0%
!!! GAGATTTTATATATATATTT+AGG + tig0021306:55449-55468 None:intergenic 10.0%
!!! TATTTTATAAAGAAAAGTTT+AGG + tig0021306:57041-57060 None:intergenic 10.0%
!!! TGAATTAATCAAATAATTTT+CGG - tig0021306:57742-57761 Msa1389970:CDS 10.0%
!! TTAAAAACTAATCTTAATCA+TGG + tig0021306:53513-53532 None:intergenic 15.0%
!!! TTTAAAAAAGTGCTAAAAAT+AGG + tig0021306:53537-53556 None:intergenic 15.0%
!!! AATATTTTTTGTTGAAAACT+CGG - tig0021306:55260-55279 Msa1389970:intron 15.0%
!! TAACAAAAAATCTTAGAATT+TGG - tig0021306:56161-56180 Msa1389970:CDS 15.0%
!!! GTTCTTTTATTTAATTTTGT+TGG + tig0021306:56245-56264 None:intergenic 15.0%
!!! AGCATTATATTTTTGTTTTA+TGG + tig0021306:56433-56452 None:intergenic 15.0%
!! ATTGAAATTTGAAGATAATT+TGG + tig0021306:56760-56779 None:intergenic 15.0%
!!! GAAGTTATTTATTTTTACTT+TGG + tig0021306:56850-56869 None:intergenic 15.0%
!! TTAATATTATTAAGCTCATG+TGG - tig0021306:55822-55841 Msa1389970:intron 20.0%
!! AAAAGTAAATAGAGAATTGT+TGG - tig0021306:56043-56062 Msa1389970:CDS 20.0%
!!! CTAAGATTTTTTGTTATGTT+TGG + tig0021306:56157-56176 None:intergenic 20.0%
!!! ATGATATCAATATGTTTTCA+AGG - tig0021306:56295-56314 Msa1389970:CDS 20.0%
!! ACTAAATAAATGTCTATTTG+AGG - tig0021306:56376-56395 Msa1389970:CDS 20.0%
!! AAAAATATAATGCTCTTACA+TGG - tig0021306:56439-56458 Msa1389970:CDS 20.0%
!! AAATTTGAAGATAATTTGGA+TGG + tig0021306:56756-56775 None:intergenic 20.0%
!!! CTAGTTAGTTTTGATATTAT+TGG + tig0021306:57089-57108 None:intergenic 20.0%
!! GGTTTAATATTCAAATTGTA+TGG + tig0021306:57673-57692 None:intergenic 20.0%
!! ATTAGAATCAAATAAGATTG+TGG - tig0021306:57792-57811 Msa1389970:CDS 20.0%
! CAATTACTACAAACTAAAGT+TGG + tig0021306:53111-53130 None:intergenic 25.0%
! TTTATTAAATGCATGTTCCT+AGG - tig0021306:53189-53208 Msa1389970:three_prime_UTR 25.0%
! AAAATGTTATCTTCACTCTT+GGG - tig0021306:53277-53296 Msa1389970:three_prime_UTR 25.0%
! CTTCTTTATAGCTATAAACA+TGG - tig0021306:53416-53435 Msa1389970:three_prime_UTR 25.0%
! AGATATAGCAAGTATGAATA+TGG - tig0021306:53481-53500 Msa1389970:three_prime_UTR 25.0%
! AACTAATCTTAATCATGGTA+AGG + tig0021306:53508-53527 None:intergenic 25.0%
!! GTTTTCATTTTCAAATGCTT+TGG + tig0021306:53762-53781 None:intergenic 25.0%
!!! CATTTTCATTTTCTAGTGTT+TGG + tig0021306:53952-53971 None:intergenic 25.0%
! CAAACACTAGAAAATGAAAA+TGG - tig0021306:53950-53969 Msa1389970:intron 25.0%
!! AAAATGGATTTCTTGCAATA+CGG - tig0021306:53966-53985 Msa1389970:intron 25.0%
! CAAGAAATCAAGTTTATCAT+TGG + tig0021306:54207-54226 None:intergenic 25.0%
! TGATAAACTTGATTTCTTGA+AGG - tig0021306:54208-54227 Msa1389970:three_prime_UTR 25.0%
! GTAGAAAATGCAAATTATAG+AGG - tig0021306:54493-54512 Msa1389970:three_prime_UTR 25.0%
! TCTAGAGAAGAATTCAAATA+GGG + tig0021306:55151-55170 None:intergenic 25.0%
!! TTCTAGAGAAGAATTCAAAT+AGG + tig0021306:55152-55171 None:intergenic 25.0%
!! ATTTTACTCTTGGAATAAGT+AGG - tig0021306:55417-55436 Msa1389970:intron 25.0%
!!! CAAGTAAGAATTTTAAGGTT+GGG + tig0021306:55972-55991 None:intergenic 25.0%
!!! ACAAGTAAGAATTTTAAGGT+TGG + tig0021306:55973-55992 None:intergenic 25.0%
! ACCTTAAAATTCTTACTTGT+AGG - tig0021306:55973-55992 Msa1389970:CDS 25.0%
!! ACCTACAAGTAAGAATTTTA+AGG + tig0021306:55977-55996 None:intergenic 25.0%
!! TTTAGAAAGAAAAGCACAAT+CGG - tig0021306:56075-56094 Msa1389970:CDS 25.0%
! CAATTGTTTAAACTAATAGC+CGG + tig0021306:56101-56120 None:intergenic 25.0%
!!! TTTTTGTTATGTTTGGTTGA+AGG + tig0021306:56150-56169 None:intergenic 25.0%
!! CTTACATGGTTTTCAATTTA+TGG - tig0021306:56453-56472 Msa1389970:CDS 25.0%
!! ACAGAAAGTAATTTTTGTGT+TGG - tig0021306:56793-56812 Msa1389970:intron 25.0%
!! TGTTGTTGTTGTAAAAGTTT+AGG + tig0021306:56976-56995 None:intergenic 25.0%
! GAATTGAAGTTCAAAATTTG+AGG + tig0021306:57522-57541 None:intergenic 25.0%
!! TGAATATTAAACCGATGTTT+TGG - tig0021306:57680-57699 Msa1389970:intron 25.0%
!! TAGATGATGGAAACTAATTC+AGG - tig0021306:52973-52992 Msa1389970:three_prime_UTR 30.0%
TGATTCTTCTGCAAATATCT+CGG + tig0021306:53076-53095 None:intergenic 30.0%
TAGGTGCATATTGTATACAT+GGG - tig0021306:53208-53227 Msa1389970:three_prime_UTR 30.0%
!! TGATACTTTTTAGCAGTTTC+TGG + tig0021306:53253-53272 None:intergenic 30.0%
! AGAGTGAAGATAACATTTTG+TGG + tig0021306:53276-53295 None:intergenic 30.0%
CAAAATGTTATCTTCACTCT+TGG - tig0021306:53276-53295 Msa1389970:three_prime_UTR 30.0%
! AGCTATAAACATGGATTTTC+AGG - tig0021306:53425-53444 Msa1389970:three_prime_UTR 30.0%
! GCTATAAACATGGATTTTCA+GGG - tig0021306:53426-53445 Msa1389970:three_prime_UTR 30.0%
! TTCAGTGAAAACAGTTTTTG+AGG + tig0021306:53670-53689 None:intergenic 30.0%
TTTGGTTGGATATTTGTAAG+AGG + tig0021306:53744-53763 None:intergenic 30.0%
! TCATTTTCAAATGCTTTGGT+TGG + tig0021306:53758-53777 None:intergenic 30.0%
CTGAAATTTCTGATCTTAAC+CGG + tig0021306:53824-53843 None:intergenic 30.0%
!! TTCATTTTCTAGTGTTTGGT+TGG + tig0021306:53948-53967 None:intergenic 30.0%
! AAATGGATTTCTTGCAATAC+GGG - tig0021306:53967-53986 Msa1389970:intron 30.0%
GTTGTTTGATCTTAATTGGA+CGG + tig0021306:54026-54045 None:intergenic 30.0%
CTGAGTTGTTTGATCTTAAT+TGG + tig0021306:54030-54049 None:intergenic 30.0%
! TTTTTAAATGCGATTTACCG+AGG - tig0021306:54071-54090 Msa1389970:intron 30.0%
!!! GACAACTCATATTTTAACCT+CGG + tig0021306:54091-54110 None:intergenic 30.0%
TACACAAAATCCCTAGAAAA+CGG - tig0021306:54168-54187 Msa1389970:three_prime_UTR 30.0%
AAGTTTCAATGATGAAGCAA+TGG - tig0021306:54249-54268 Msa1389970:three_prime_UTR 30.0%
AGTTTCAATGATGAAGCAAT+GGG - tig0021306:54250-54269 Msa1389970:three_prime_UTR 30.0%
AACTGTAACAAGAAGATCAT+TGG - tig0021306:54331-54350 Msa1389970:three_prime_UTR 30.0%
! TGTGATCAGTTATTCCTTTT+AGG + tig0021306:54369-54388 None:intergenic 30.0%
GATCAACATACGAAAACAAA+GGG + tig0021306:54690-54709 None:intergenic 30.0%
TGATCAACATACGAAAACAA+AGG + tig0021306:54691-54710 None:intergenic 30.0%
! AAGGTTATTTCCAAGTGTAA+TGG + tig0021306:54875-54894 None:intergenic 30.0%
TTGGAAATAACCTTACTTTG+TGG - tig0021306:54881-54900 Msa1389970:CDS 30.0%
TGGAAATAACCTTACTTTGT+GGG - tig0021306:54882-54901 Msa1389970:CDS 30.0%
CAACTACTTCTGTATCAAAT+TGG - tig0021306:54912-54931 Msa1389970:CDS 30.0%
ACAGTTGATTGATATAATGC+AGG - tig0021306:54954-54973 Msa1389970:intron 30.0%
CAGTTGATTGATATAATGCA+GGG - tig0021306:54955-54974 Msa1389970:intron 30.0%
ACTATGAAATGAAGTAACTC+TGG - tig0021306:55391-55410 Msa1389970:intron 30.0%
TCATAATCTACCTTAATGCA+CGG + tig0021306:55697-55716 None:intergenic 30.0%
ATTAAGGTAGATTATGAAGC+AGG - tig0021306:55700-55719 Msa1389970:intron 30.0%
TTAAGGTAGATTATGAAGCA+GGG - tig0021306:55701-55720 Msa1389970:intron 30.0%
TAACCTATATTAGAAGAGCA+AGG - tig0021306:55734-55753 Msa1389970:CDS 30.0%
TATGCATAGATTGACAAGAT+TGG - tig0021306:55772-55791 Msa1389970:CDS 30.0%
TATTATTAAGCTCATGTGGA+AGG - tig0021306:55826-55845 Msa1389970:intron 30.0%
! AGTTTTCCAAAGACTGTTAT+AGG - tig0021306:55867-55886 Msa1389970:intron 30.0%
! CATTTTCCTATAACAGTCTT+TGG + tig0021306:55876-55895 None:intergenic 30.0%
CAAAGACTGTTATAGGAAAA+TGG - tig0021306:55874-55893 Msa1389970:intron 30.0%
CAAATTTCAGAAACATGATC+TGG + tig0021306:56018-56037 None:intergenic 30.0%
! TAAATAGAGAATTGTTGGCT+AGG - tig0021306:56048-56067 Msa1389970:CDS 30.0%
ATTTGGATTAAGTCTAACTC+AGG - tig0021306:56178-56197 Msa1389970:CDS 30.0%
ATCCTACAATACTACAGATA+TGG + tig0021306:56221-56240 None:intergenic 30.0%
! AGTGGATTCATATTCTTATC+TGG - tig0021306:56587-56606 Msa1389970:intron 30.0%
TGTAAAAGTTTAGGTGAGTT+GGG + tig0021306:56967-56986 None:intergenic 30.0%
TTGTAAAAGTTTAGGTGAGT+TGG + tig0021306:56968-56987 None:intergenic 30.0%
CATATACAACATTACCACAA+AGG - tig0021306:57251-57270 Msa1389970:intron 30.0%
GAATTGGATATAATCCTTTG+TGG + tig0021306:57268-57287 None:intergenic 30.0%
!! ACTCTCACTTTTATACCATA+AGG + tig0021306:57495-57514 None:intergenic 30.0%
ATTTCAACTCAAAAGTTGCA+TGG - tig0021306:57576-57595 Msa1389970:intron 30.0%
CAAACTAATTGCCAAAACAT+CGG + tig0021306:57694-57713 None:intergenic 30.0%
AAACAAGAGATGTGCTAGAA+AGG - tig0021306:52996-53015 Msa1389970:three_prime_UTR 35.0%
ATTCTTCTGCAAATATCTCG+GGG + tig0021306:53074-53093 None:intergenic 35.0%
GATTCTTCTGCAAATATCTC+GGG + tig0021306:53075-53094 None:intergenic 35.0%
CATGTATACAATATGCACCT+AGG + tig0021306:53209-53228 None:intergenic 35.0%
CTAGGTGCATATTGTATACA+TGG - tig0021306:53207-53226 Msa1389970:three_prime_UTR 35.0%
!! ACTTGCTATATCTTCTGCTT+GGG + tig0021306:53474-53493 None:intergenic 35.0%
!! TACTTGCTATATCTTCTGCT+TGG + tig0021306:53475-53494 None:intergenic 35.0%
ATACAATGTAGAGTTTCCAG+AGG - tig0021306:53566-53585 Msa1389970:three_prime_UTR 35.0%
GTAGTTTCTGTCATTCCAAA+TGG - tig0021306:53588-53607 Msa1389970:three_prime_UTR 35.0%
TGAAGTTTGTGAATGCCATT+TGG + tig0021306:53606-53625 None:intergenic 35.0%
AACTTCACACAACTAGAAGT+TGG - tig0021306:53619-53638 Msa1389970:three_prime_UTR 35.0%
ACTTCACACAACTAGAAGTT+GGG - tig0021306:53620-53639 Msa1389970:three_prime_UTR 35.0%
!! GTGAAAACAGTTTTTGAGGA+GGG + tig0021306:53666-53685 None:intergenic 35.0%
!! AGTGAAAACAGTTTTTGAGG+AGG + tig0021306:53667-53686 None:intergenic 35.0%
! GTTTTCACTGAAAGCAACTT+AGG - tig0021306:53678-53697 Msa1389970:intron 35.0%
ATGAGTTGTCCAGTGAAAAT+TGG - tig0021306:54101-54120 Msa1389970:three_prime_UTR 35.0%
!! CTTGATTTCTTGAAGGCATT+TGG - tig0021306:54215-54234 Msa1389970:three_prime_UTR 35.0%
AAAATTCCATCCAAGTGGAA+AGG - tig0021306:54274-54293 Msa1389970:three_prime_UTR 35.0%
GATCTTCTTGTTACAGTTTG+TGG + tig0021306:54329-54348 None:intergenic 35.0%
! TATCCTCAAAGCATTTGACA+TGG - tig0021306:54615-54634 Msa1389970:three_prime_UTR 35.0%
! GATGTCTTAACTGTTTCTCT+TGG - tig0021306:54655-54674 Msa1389970:three_prime_UTR 35.0%
! TTAACTGTTTCTCTTGGCAT+TGG - tig0021306:54661-54680 Msa1389970:three_prime_UTR 35.0%
AGAAACAACTGTGATACCTT+TGG + tig0021306:54752-54771 None:intergenic 35.0%
TTCGAAACGGTTTGAGAAAT+AGG + tig0021306:54793-54812 None:intergenic 35.0%
! AAAAGTCCTATCGATTGTAG+TGG + tig0021306:54845-54864 None:intergenic 35.0%
!! AGAGTGTTTTCCATTGTCAA+TGG + tig0021306:54986-55005 None:intergenic 35.0%
AAACACTCTCTTGGATTTGT+CGG - tig0021306:54997-55016 Msa1389970:intron 35.0%
TGTGTATGAAGAAGGAAGAA+AGG + tig0021306:55077-55096 None:intergenic 35.0%
CTTCTTCATACACACAAACA+CGG - tig0021306:55083-55102 Msa1389970:CDS 35.0%
TTCTTCATACACACAAACAC+GGG - tig0021306:55084-55103 Msa1389970:CDS 35.0%
GGTGGCTATACAATATTCAA+CGG - tig0021306:55337-55356 Msa1389970:intron 35.0%
! ACTCTGGCAAATTTTACTCT+TGG - tig0021306:55407-55426 Msa1389970:intron 35.0%
!! CTATGTCTTCCTTTGAAGTA+AGG - tig0021306:55495-55514 Msa1389970:intron 35.0%
ACTGACAATCCTTACTTCAA+AGG + tig0021306:55507-55526 None:intergenic 35.0%
TGGAAGTCTGAATGAAACAA+TGG - tig0021306:55528-55547 Msa1389970:intron 35.0%
TCACCTTGCTCTTCTAATAT+AGG + tig0021306:55740-55759 None:intergenic 35.0%
TATATTAGAAGAGCAAGGTG+AGG - tig0021306:55739-55758 Msa1389970:CDS 35.0%
TGCCATATCTGTAGTATTGT+AGG - tig0021306:56216-56235 Msa1389970:CDS 35.0%
GTTATATATTGCTTCTCTGC+TGG + tig0021306:56327-56346 None:intergenic 35.0%
! GAGAAATTCGATTTGAGTGA+AGG - tig0021306:56347-56366 Msa1389970:CDS 35.0%
TAAAATCCAAACACCCAACT+TGG - tig0021306:56654-56673 Msa1389970:intron 35.0%
TGTTACCAAAGCTGATCTTA+TGG + tig0021306:56690-56709 None:intergenic 35.0%
CGAACATCAACATAGTTGTT+TGG - tig0021306:56723-56742 Msa1389970:intron 35.0%
TGGAACCTTCTTCTGATATA+AGG + tig0021306:57158-57177 None:intergenic 35.0%
AGAAGAAGGTTCCACAAATA+AGG - tig0021306:57164-57183 Msa1389970:intron 35.0%
TATCCAATTCCTATGTTCCA+TGG - tig0021306:57278-57297 Msa1389970:intron 35.0%
ATCCAATTCCTATGTTCCAT+GGG - tig0021306:57279-57298 Msa1389970:intron 35.0%
TATTATGACCCATGGAACAT+AGG + tig0021306:57290-57309 None:intergenic 35.0%
! TTGTTTGTTGCAACTTGTAG+TGG + tig0021306:57340-57359 None:intergenic 35.0%
TTGATATGGAAGGAAGGTTA+AGG + tig0021306:57383-57402 None:intergenic 35.0%
TTGGAATTGATATGGAAGGA+AGG + tig0021306:57389-57408 None:intergenic 35.0%
! AGGTTTGGAATTGATATGGA+AGG + tig0021306:57393-57412 None:intergenic 35.0%
! CTTCAGGTTTGGAATTGATA+TGG + tig0021306:57397-57416 None:intergenic 35.0%
TTACTGTTGTATGACTCTTC+AGG + tig0021306:57413-57432 None:intergenic 35.0%
GCTATAGTGAATAGTCCTTA+TGG - tig0021306:57477-57496 Msa1389970:intron 35.0%
TGAAATGAAGCTTACGTTGA+AGG + tig0021306:57562-57581 None:intergenic 35.0%
TTGCATGGTGATTACAGATT+TGG - tig0021306:57591-57610 Msa1389970:intron 35.0%
CGGTAGTTAAGTATTCTTTG+AGG - tig0021306:57762-57781 Msa1389970:CDS 35.0%
! GCTGTCTACTGATTAGATGA+TGG - tig0021306:52960-52979 Msa1389970:three_prime_UTR 40.0%
TGTTATCTTCACTCTTGGGA+AGG - tig0021306:53281-53300 Msa1389970:three_prime_UTR 40.0%
ACTAGAAGTTGGGACTTCAT+TGG - tig0021306:53630-53649 Msa1389970:three_prime_UTR 40.0%
CTAGAAGTTGGGACTTCATT+GGG - tig0021306:53631-53650 Msa1389970:three_prime_UTR 40.0%
TAGAAGTTGGGACTTCATTG+GGG - tig0021306:53632-53651 Msa1389970:three_prime_UTR 40.0%
ACTGAAAGCAACTTAGGTCA+AGG - tig0021306:53684-53703 Msa1389970:intron 40.0%
TTAGGTCAAGGAACCATCAT+AGG - tig0021306:53696-53715 Msa1389970:intron 40.0%
CATTCATGCAGTCAGCAAAT+CGG - tig0021306:53792-53811 Msa1389970:intron 40.0%
CTGAGTCATCCGATGAAAAT+CGG - tig0021306:53895-53914 Msa1389970:intron 40.0%
! TAGCACCATCCGATTTTCAT+CGG + tig0021306:53907-53926 None:intergenic 40.0%
! GAAAATCGGATGGTGCTAAT+TGG - tig0021306:53909-53928 Msa1389970:intron 40.0%
CATTCATGCTGTCAGCAATT+TGG - tig0021306:53998-54017 Msa1389970:intron 40.0%
GTTGTCCAGTGAAAATTGGA+TGG - tig0021306:54105-54124 Msa1389970:three_prime_UTR 40.0%
! CTTCACCATCCAATTTTCAC+TGG + tig0021306:54113-54132 None:intergenic 40.0%
! TCTAGGGATTTTGTGTAGTC+AGG + tig0021306:54165-54184 None:intergenic 40.0%
!! CATTACAACGCCGTTTTCTA+GGG + tig0021306:54181-54200 None:intergenic 40.0%
!! ACATTACAACGCCGTTTTCT+AGG + tig0021306:54182-54201 None:intergenic 40.0%
TCATTGAAACTTGCAGACTC+TGG + tig0021306:54241-54260 None:intergenic 40.0%
TGGGAAAAATTCCATCCAAG+TGG - tig0021306:54269-54288 Msa1389970:three_prime_UTR 40.0%
TTGACAAACTCCTTTCCACT+TGG + tig0021306:54287-54306 None:intergenic 40.0%
TGGAAAGGAGTTTGTCAAGT+TGG - tig0021306:54289-54308 Msa1389970:three_prime_UTR 40.0%
!! AGAAGATCATTGGTGCTAGA+TGG - tig0021306:54341-54360 Msa1389970:three_prime_UTR 40.0%
TGTCATTGTTTCCAAGGATG+AGG + tig0021306:54399-54418 None:intergenic 40.0%
! CTGTAGTGTCATTGTTTCCA+AGG + tig0021306:54405-54424 None:intergenic 40.0%
AATTATAGAGGCCTTGCTTC+TGG - tig0021306:54505-54524 Msa1389970:three_prime_UTR 40.0%
TAGATAGCCAAGTGAGCTAA+AGG + tig0021306:54550-54569 None:intergenic 40.0%
TAGCCATGTCAAATGCTTTG+AGG + tig0021306:54621-54640 None:intergenic 40.0%
TTTGACATGGCTATACACGA+TGG - tig0021306:54628-54647 Msa1389970:three_prime_UTR 40.0%
!! ATCACAGTTGTTTCTTCAGC+TGG - tig0021306:54757-54776 Msa1389970:three_prime_UTR 40.0%
GTTTCTTCAGCTGGAAATTC+TGG - tig0021306:54766-54785 Msa1389970:three_prime_UTR 40.0%
TTTCCAACAGCCATTACACT+TGG - tig0021306:54862-54881 Msa1389970:CDS 40.0%
TTTCCAAGTGTAATGGCTGT+TGG + tig0021306:54868-54887 None:intergenic 40.0%
TGTAGCATACCCACAAAGTA+AGG + tig0021306:54894-54913 None:intergenic 40.0%
GACAATGGAAAACACTCTCT+TGG - tig0021306:54988-55007 Msa1389970:intron 40.0%
AACACTCTCTTGGATTTGTC+GGG - tig0021306:54998-55017 Msa1389970:intron 40.0%
CGTGTTTGTGTGTATGAAGA+AGG + tig0021306:55085-55104 None:intergenic 40.0%
!! CTATAGGATTAGTCGGTTCT+TGG + tig0021306:55294-55313 None:intergenic 40.0%
AGAACCGACTAATCCTATAG+AGG - tig0021306:55294-55313 Msa1389970:intron 40.0%
! AAGGCCTCTATAGGATTAGT+CGG + tig0021306:55301-55320 None:intergenic 40.0%
GGCTATACAATATTCAACGG+TGG - tig0021306:55340-55359 Msa1389970:intron 40.0%
TGAAGTAAGGATTGTCAGTC+TGG - tig0021306:55508-55527 Msa1389970:intron 40.0%
TTCTGCAGCACTTACAGTAA+AGG - tig0021306:55603-55622 Msa1389970:intron 40.0%
! GAAGATGGACTCAATGAATG+TGG - tig0021306:55664-55683 Msa1389970:intron 40.0%
TGGTATACTTCCGTGCATTA+AGG - tig0021306:55684-55703 Msa1389970:intron 40.0%
GATGAGAAAGATGCAACTCT+TGG + tig0021306:55906-55925 None:intergenic 40.0%
GTTGCATCTTTCTCATCTAG+AGG - tig0021306:55909-55928 Msa1389970:CDS 40.0%
TGGATTAAGTCTAACTCAGG+TGG - tig0021306:56181-56200 Msa1389970:CDS 40.0%
ATCATAACCTGCACTCTTCT+GGG - tig0021306:56480-56499 Msa1389970:CDS 40.0%
GAATGACTGATGGAAATAGC+CGG - tig0021306:56502-56521 Msa1389970:CDS 40.0%
! CTGCTCTTTTTACTTCCCTT+GGG + tig0021306:56569-56588 None:intergenic 40.0%
! ACTGCTCTTTTTACTTCCCT+TGG + tig0021306:56570-56589 None:intergenic 40.0%
AAGGGAAGTAAAAAGAGCAG+TGG - tig0021306:56569-56588 Msa1389970:intron 40.0%
ATCAATGTCTTGTCCTCATG+TGG - tig0021306:56613-56632 Msa1389970:intron 40.0%
! AGATCAGCTTTGGTAACAAC+AGG - tig0021306:56692-56711 Msa1389970:intron 40.0%
! TTTAGGTGAGTTGGGTCTTA+GGG + tig0021306:56959-56978 None:intergenic 40.0%
!! CCTGCATTGATTGCTTTGTT+AGG + tig0021306:57228-57247 None:intergenic 40.0%
CCTAACAAAGCAATCAATGC+AGG - tig0021306:57225-57244 Msa1389970:intron 40.0%
AGATGCTGTATTATGACCCA+TGG + tig0021306:57298-57317 None:intergenic 40.0%
! GTTGCAACTTGTAGTGGTTT+TGG + tig0021306:57334-57353 None:intergenic 40.0%
! GTTGTATGACTCTTCAGGTT+TGG + tig0021306:57408-57427 None:intergenic 40.0%
ATGAGAACAGTGACAAACGT+TGG - tig0021306:57432-57451 Msa1389970:intron 40.0%
ACAGATTTGGAAGCCTAACA+TGG - tig0021306:57604-57623 Msa1389970:intron 40.0%
! CAGATGGCAATCATTTTGTG+AGG - tig0021306:57628-57647 Msa1389970:intron 40.0%
TGAGGATACCAATAGCTGTT+AGG - tig0021306:57646-57665 Msa1389970:intron 40.0%
TGTATGGTCCTAACAGCTAT+TGG + tig0021306:57657-57676 None:intergenic 40.0%
TCTTCACTCTTGGGAAGGTA+TGG - tig0021306:53286-53305 Msa1389970:three_prime_UTR 45.0%
GGAATGACAGAAACTACCTC+TGG + tig0021306:53585-53604 None:intergenic 45.0%
!! CAGTTTTTGAGGAGGGATGA+TGG + tig0021306:53659-53678 None:intergenic 45.0%
TGTGTCTATGACGCCTATGA+TGG + tig0021306:53712-53731 None:intergenic 45.0%
ATCATAGGCGTCATAGACAC+AGG - tig0021306:53711-53730 Msa1389970:intron 45.0%
GTCATCCGATGAAAATCGGA+TGG - tig0021306:53899-53918 Msa1389970:intron 45.0%
CAAACTCCTTTCCACTTGGA+TGG + tig0021306:54283-54302 None:intergenic 45.0%
GGTGCTAGATGGTTCCTAAA+AGG - tig0021306:54352-54371 Msa1389970:three_prime_UTR 45.0%
CACACTAAGAACCTCATCCT+TGG - tig0021306:54385-54404 Msa1389970:three_prime_UTR 45.0%
CTCTCAGCTAGAGATGCTAT+TGG - tig0021306:54430-54449 Msa1389970:three_prime_UTR 45.0%
TTGAAGCTGTGTGAGTTCCA+TGG + tig0021306:54456-54475 None:intergenic 45.0%
CTCTTGCTAAACCAGAAGCA+AGG + tig0021306:54519-54538 None:intergenic 45.0%
!! CTTGCTTCTGGTTTAGCAAG+AGG - tig0021306:54517-54536 Msa1389970:three_prime_UTR 45.0%
TGGCTATCTACAAAGCTTGC+TGG - tig0021306:54560-54579 Msa1389970:three_prime_UTR 45.0%
! GGCTATCTACAAAGCTTGCT+GGG - tig0021306:54561-54580 Msa1389970:three_prime_UTR 45.0%
TCTTTCCACGCAACTTCCAA+AGG - tig0021306:54733-54752 Msa1389970:three_prime_UTR 45.0%
! TGATACCTTTGGAAGTTGCG+TGG + tig0021306:54741-54760 None:intergenic 45.0%
!! CCATGGTGCTGTATTCGAAA+CGG + tig0021306:54806-54825 None:intergenic 45.0%
ACCATGGCTCATTACAGTTG+CGG - tig0021306:54819-54838 Msa1389970:exon 45.0%
TCTCACGCTAAATCATCCGA+TGG + tig0021306:55054-55073 None:intergenic 45.0%
!! GGATTAGTCGGTTCTTGGAT+CGG + tig0021306:55289-55308 None:intergenic 45.0%
CTGAATGAAACAATGGCAGC+AGG - tig0021306:55535-55554 Msa1389970:intron 45.0%
GCACTTACAGTAAAGGAAGC+TGG - tig0021306:55610-55629 Msa1389970:intron 45.0%
CTTACAGTAAAGGAAGCTGG+TGG - tig0021306:55613-55632 Msa1389970:intron 45.0%
TATGCACAGCGTCATGAAGA+TGG - tig0021306:55649-55668 Msa1389970:intron 45.0%
! ACAGTTGGAGACAAGGTACT+AGG + tig0021306:55936-55955 None:intergenic 45.0%
CTTTAGCACAGTTGGAGACA+AGG + tig0021306:55943-55962 None:intergenic 45.0%
CTTGTCTCCAACTGTGCTAA+AGG - tig0021306:55941-55960 Msa1389970:CDS 45.0%
GGCTATACCTTTAGCACAGT+TGG + tig0021306:55951-55970 None:intergenic 45.0%
! GAAAGAAAAGCACAATCGGC+CGG - tig0021306:56079-56098 Msa1389970:CDS 45.0%
CATCATAACCTGCACTCTTC+TGG - tig0021306:56479-56498 Msa1389970:CDS 45.0%
! ACTCTTCTGGGAATGACTGA+TGG - tig0021306:56492-56511 Msa1389970:CDS 45.0%
! CTCTTTTTACTTCCCTTGGG+TGG + tig0021306:56566-56585 None:intergenic 45.0%
AAAGCTGATCTTATGGCTGC+AGG + tig0021306:56683-56702 None:intergenic 45.0%
TGCAGCCATAAGATCAGCTT+TGG - tig0021306:56682-56701 Msa1389970:intron 45.0%
TTAGTGCTCTCTGAGCCTTA+AGG - tig0021306:56913-56932 Msa1389970:intron 45.0%
! TTAGGTGAGTTGGGTCTTAG+GGG + tig0021306:56958-56977 None:intergenic 45.0%
! GTTTAGGTGAGTTGGGTCTT+AGG + tig0021306:56960-56979 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0021306:56998-57017 Msa1389970:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0021306:56999-57018 Msa1389970:intron 45.0%
! AAAAGTGCAGCCTCTCAAAG+CGG - tig0021306:57120-57139 Msa1389970:intron 45.0%
! GGAGGCCTTATATCAGAAGA+AGG - tig0021306:57150-57169 Msa1389970:intron 45.0%
GCAGCAGACCCATTTGATAT+CGG - tig0021306:57186-57205 Msa1389970:intron 45.0%
CAGCAGACCCATTTGATATC+GGG - tig0021306:57187-57206 Msa1389970:intron 45.0%
AGCAGACCCATTTGATATCG+GGG - tig0021306:57188-57207 Msa1389970:intron 45.0%
GACCCATGGAACATAGGAAT+TGG + tig0021306:57284-57303 None:intergenic 45.0%
GATTGCCATCTGTCCATGTT+AGG + tig0021306:57620-57639 None:intergenic 45.0%
GCTAGAGATGCTATTGGCCA+TGG - tig0021306:54436-54455 Msa1389970:three_prime_UTR 50.0%
!! GCTTCTGGTTTAGCAAGAGG+AGG - tig0021306:54520-54539 Msa1389970:three_prime_UTR 50.0%
!! AGGAGCACCTTTAGCTCACT+TGG - tig0021306:54540-54559 Msa1389970:three_prime_UTR 50.0%
GCATCAGTACAGTGTCCAAC+AGG + tig0021306:54592-54611 None:intergenic 50.0%
CAACGCGACACGATAGCAAT+TGG - tig0021306:54709-54728 Msa1389970:three_prime_UTR 50.0%
CCGTTTCGAATACAGCACCA+TGG - tig0021306:54803-54822 Msa1389970:exon 50.0%
TTGCGGCCACTACAATCGAT+AGG - tig0021306:54836-54855 Msa1389970:CDS 50.0%
CAGGGACAGTCCATTGACAA+TGG - tig0021306:54973-54992 Msa1389970:intron 50.0%
TCCTATAGAGGCCTTGCTTC+TGG - tig0021306:55306-55325 Msa1389970:intron 50.0%
ACCAGAAGCAAGGCCTCTAT+AGG + tig0021306:54509-54528 None:intergenic 50.0%
!! GCCTTGCTTCTGGTTTAGCA+CGG - tig0021306:54515-54534 Msa1389970:three_prime_UTR 50.0%
ACCGTGCTAAACCAGAAGCA+AGG + tig0021306:55320-55339 None:intergenic 50.0%
!! TTGCTTCTGGTTTAGCACGG+TGG - tig0021306:55319-55338 Msa1389970:intron 50.0%
GTAAAGGAAGCTGGTGGAGT+TGG - tig0021306:55619-55638 Msa1389970:intron 50.0%
GTGGAAGGTTTCCAACTGCA+AGG - tig0021306:55841-55860 Msa1389970:intron 50.0%
GGAAAACTCAGCCTTGCAGT+TGG + tig0021306:55855-55874 None:intergenic 50.0%
! AGTCATTCCCAGAAGAGTGC+AGG + tig0021306:56490-56509 None:intergenic 50.0%
TGCAGCCAAAATGTCCACAC+CGG + tig0021306:56540-56559 None:intergenic 50.0%
TTTGGCTGCATTTCCACCCA+AGG - tig0021306:56550-56569 Msa1389970:intron 50.0%
TTGGCTGCATTTCCACCCAA+GGG - tig0021306:56551-56570 Msa1389970:intron 50.0%
ATGTCTTGTCCTCATGTGGC+AGG - tig0021306:56617-56636 Msa1389970:intron 50.0%
! AGGTGACCAAGTTGGGTGTT+TGG + tig0021306:56663-56682 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0021306:57000-57019 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0021306:56997-57016 Msa1389970:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0021306:57003-57022 Msa1389970:intron 50.0%
TGTAACCGACCCCACTTAGT+GGG + tig0021306:57011-57030 None:intergenic 50.0%
ATGTAACCGACCCCACTTAG+TGG + tig0021306:57012-57031 None:intergenic 50.0%
ACTAAGTGGGGTCGGTTACA+TGG - tig0021306:57011-57030 Msa1389970:intron 50.0%
! TCCATCAGTTCCGCTTTGAG+AGG + tig0021306:57133-57152 None:intergenic 50.0%
TCTCAAAGCGGAACTGATGG+AGG - tig0021306:57132-57151 Msa1389970:intron 50.0%
!! TGGGTCTGCTGCCTTATTTG+TGG + tig0021306:57178-57197 None:intergenic 50.0%
GCAGACCCATTTGATATCGG+GGG - tig0021306:57189-57208 Msa1389970:intron 50.0%
GTCCTCCCCCGATATCAAAT+GGG + tig0021306:57197-57216 None:intergenic 50.0%
TGTCCTCCCCCGATATCAAA+TGG + tig0021306:57198-57217 None:intergenic 50.0%
GGAAGCCTAACATGGACAGA+TGG - tig0021306:57612-57631 Msa1389970:intron 50.0%
CACACAGCTTCAACAGCAGC+TGG - tig0021306:54463-54482 Msa1389970:three_prime_UTR 55.0%
GCCGCAACTGTAATGAGCCA+TGG + tig0021306:54823-54842 None:intergenic 55.0%
TGGATCACGTGCAATGCGCT+CGG + tig0021306:55034-55053 None:intergenic 55.0%
GCGCATTGCACGTGATCCAT+CGG - tig0021306:55035-55054 Msa1389970:CDS 55.0%
! AGCACCCGGTGTGGACATTT+TGG - tig0021306:56532-56551 Msa1389970:intron 55.0%
GCAGCCAAAATGTCCACACC+GGG + tig0021306:56539-56558 None:intergenic 55.0%
GCTGCTATTCCTGCCACATG+AGG + tig0021306:56629-56648 None:intergenic 55.0%
TGGCTGCAGGTGACCAAGTT+GGG + tig0021306:56670-56689 None:intergenic 55.0%
ATGGCTGCAGGTGACCAAGT+TGG + tig0021306:56671-56690 None:intergenic 55.0%
CCAGGGTCAGACAAGCCTTA+AGG + tig0021306:56931-56950 None:intergenic 55.0%
CCTTAAGGCTTGTCTGACCC+TGG - tig0021306:56928-56947 Msa1389970:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0021306:57005-57024 None:intergenic 55.0%
GCCTCTCAAAGCGGAACTGA+TGG - tig0021306:57129-57148 Msa1389970:intron 55.0%
GACCCATTTGATATCGGGGG+AGG - tig0021306:57192-57211 Msa1389970:intron 55.0%
GTCAGCAAATCGGCGTCGTC+CGG - tig0021306:53802-53821 Msa1389970:intron 60.0%
! GCTTGCTGGGACGTTCCTGT+TGG - tig0021306:54574-54593 Msa1389970:three_prime_UTR 60.0%
TAGCCGGACATAGCAGCACC+CGG - tig0021306:56518-56537 Msa1389970:CDS 60.0%
!! ACACCGGGTGCTGCTATGTC+CGG + tig0021306:56524-56543 None:intergenic 60.0%
TGGGTCTTAGGGGCTCACCA+GGG + tig0021306:56948-56967 None:intergenic 60.0%
TTGGGTCTTAGGGGCTCACC+AGG + tig0021306:56949-56968 None:intergenic 60.0%
TGATATCGGGGGAGGACACG+TGG - tig0021306:57200-57219 Msa1389970:intron 60.0%
GGACATAGCAGCACCCGGTG+TGG - tig0021306:56523-56542 Msa1389970:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0021306 gene 52949 57840 52949 ID=Msa1389970;Name=Msa1389970
tig0021306 mRNA 52949 57840 52949 ID=Msa1389970-mRNA-1;Parent=Msa1389970;Name=Msa1389970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=27|0.85|0.87|1|1|0.87|8|1456|477
tig0021306 exon 52949 53659 52949 ID=Msa1389970-mRNA-1:exon:11930;Parent=Msa1389970-mRNA-1
tig0021306 exon 54076 54941 54076 ID=Msa1389970-mRNA-1:exon:11929;Parent=Msa1389970-mRNA-1
tig0021306 exon 55034 55276 55034 ID=Msa1389970-mRNA-1:exon:11928;Parent=Msa1389970-mRNA-1
tig0021306 exon 55722 55813 55722 ID=Msa1389970-mRNA-1:exon:11927;Parent=Msa1389970-mRNA-1
tig0021306 exon 55886 56547 55886 ID=Msa1389970-mRNA-1:exon:11926;Parent=Msa1389970-mRNA-1
tig0021306 exon 57298 57395 57298 ID=Msa1389970-mRNA-1:exon:11925;Parent=Msa1389970-mRNA-1
tig0021306 exon 57487 57578 57487 ID=Msa1389970-mRNA-1:exon:11924;Parent=Msa1389970-mRNA-1
tig0021306 exon 57688 57840 57688 ID=Msa1389970-mRNA-1:exon:11923;Parent=Msa1389970-mRNA-1
tig0021306 five_prime_UTR 57814 57840 57814 ID=Msa1389970-mRNA-1:five_prime_utr;Parent=Msa1389970-mRNA-1
tig0021306 CDS 57688 57813 57688 ID=Msa1389970-mRNA-1:cds;Parent=Msa1389970-mRNA-1
tig0021306 CDS 57487 57578 57487 ID=Msa1389970-mRNA-1:cds;Parent=Msa1389970-mRNA-1
tig0021306 CDS 57298 57395 57298 ID=Msa1389970-mRNA-1:cds;Parent=Msa1389970-mRNA-1
tig0021306 CDS 55886 56547 55886 ID=Msa1389970-mRNA-1:cds;Parent=Msa1389970-mRNA-1
tig0021306 CDS 55722 55813 55722 ID=Msa1389970-mRNA-1:cds;Parent=Msa1389970-mRNA-1
tig0021306 CDS 55034 55276 55034 ID=Msa1389970-mRNA-1:cds;Parent=Msa1389970-mRNA-1
tig0021306 CDS 54821 54941 54821 ID=Msa1389970-mRNA-1:cds;Parent=Msa1389970-mRNA-1
tig0021306 three_prime_UTR 54076 54820 54076 ID=Msa1389970-mRNA-1:three_prime_utr;Parent=Msa1389970-mRNA-1
tig0021306 three_prime_UTR 52949 53659 52949 ID=Msa1389970-mRNA-1:three_prime_utr;Parent=Msa1389970-mRNA-1
Gene Sequence

>Msa1389970

ATGATGGAAACTAATTCAGGAAACAAGAGATGTGCTAGAAAGGTTCAATTGCTTGTAACTTCAGCTCTTCTTTTACTGCAAAGCTTTCTGATCATCCCCGAGATATTTGCAGAAGAATCAAGCTCTGTGCATATTGTATACATGGGAGAAAAGATATATCATAATCCAGAAACTGCTAAAAAGTATCACCACAAAATGTTATCTTCACTCTTGGGAAGCAAAGAAGATGCAAAGAATTCACTTCTTTATAGCTATAAACATGGATTTTCAGGGTTTGCTGCTAGAATGACAAAGTCCCAAGCAGAAGATATAGCAAAGTCTGCAAGTTTCAATGATGAAGCAATGGGAAAAATTCCATCCAAGTGGAAAGGAGTTTGTCAAGTTGGAGAAAAATTTAACTCCACAAACTGTAACAAGAAGATCATTGGTGCTAGATGGTTCCTAAAAGGAATAACTGATCACACTAAGAACCTCATCCTTGGAAACAATGACACTACAGAATATCTCTCAGCTAGAGATGCTATTGGCCATGGAACTCACACAGCTTCAACAGCAGCTGGATATTATGTAGAAAATGCAAATTATAGAGGCCTTGCTTCTGGTTTAGCAAGAGGAGGAGCACCTTTAGCTCACTTGGCTATCTACAAAGCTTGCTGGGACGTTCCTGTTGGACACTGTACTGATGCTGATATCCTCAAAGCATTTGACATGGCTATACACGATGGTGTAGATGTCTTAACTGTTTCTCTTGGCATTGGCATCCCTTTGTTTTCGTATGTTGATCAACGCGACACGATAGCAATTGGTTCTTTCCACGCAACTTCCAAAGGTATCACAGTTGTTTCTTCAGCTGGAAATTCTGGTCCTATTTCTCAAACCGTTTCGAATACAGCACCATGGCTCATTACAGTTGCGGCCACTACAATCGATAGGACTTTTCCAACAGCCATTACACTTGGAAATAACCTTACTTTGTGGGGACAGTCCATTGACAATGGAAAACACTCTCTTGGATTTGTCGGGCTCACATACTCCGAGCGCATTGCACGTGATCCATCGGATGATTTAGCTAAGGATTGTCAGTCTGGAAGTCTGAATGAAACAATGGCAGCAGGAAAAATTGTTCTATGCTTTTCAGTATCAGATCAACAAGATATTGTTTCTGCAGCACTTACAGTAAAGGAAGCTGGTGGAGTTGGACTAATATATGCACAGCGTCATGAAGATGGACTCAATGAATGTGGTATACTTCCGTGCATTAAGGTAGATTATGAAGCAGGGACACAACTGTTAACCTATATTAGAAGAGCAAGGTTTCCAACTGCAAGGCTGAGTTTTCCAAAGACTGTTATAGGAAAATGGATATCTCCAAGAGTTGCATCTTTCTCATCTAGAGGACCTAGTACCTTGTCTCCAACTGTGCTAAAGGTATAG
Protein sequence

>Msa1389970

MMETNSGNKRCARKVQLLVTSALLLLQSFLIIPEIFAEESSSVHIVYMGEKIYHNPETAKKYHHKMLSSLLGSKEDAKNSLLYSYKHGFSGFAARMTKSQAEDIAKSASFNDEAMGKIPSKWKGVCQVGEKFNSTNCNKKIIGARWFLKGITDHTKNLILGNNDTTEYLSARDAIGHGTHTASTAAGYYVENANYRGLASGLARGGAPLAHLAIYKACWDVPVGHCTDADILKAFDMAIHDGVDVLTVSLGIGIPLFSYVDQRDTIAIGSFHATSKGITVVSSAGNSGPISQTVSNTAPWLITVAATTIDRTFPTAITLGNNLTLWGQSIDNGKHSLGFVGLTYSERIARDPSDDLAKDCQSGSLNETMAAGKIVLCFSVSDQQDIVSAALTVKEAGGVGLIYAQRHEDGLNECGILPCIKVDYEAGTQLLTYIRRARFPTARLSFPKTVIGKWISPRVASFSSRGPSTLSPTVLKV*