AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577380 MtrunA17_Chr8g0377961 97.551 735 17 1 1 735 48 781 0.0 1479
Msa0577380 MtrunA17_Chr8g0369891 44.399 732 387 11 1 729 39 753 0.0 587
Msa0577380 MtrunA17_Chr5g0407701 44.105 721 381 12 14 729 47 750 0.0 577
Msa0577380 MtrunA17_Chr4g0026641 42.005 738 408 11 1 731 32 756 0.0 547
Msa0577380 MtrunA17_Chr7g0262161 42.127 743 374 16 14 728 46 760 0.0 543
Msa0577380 MtrunA17_Chr3g0120521 42.334 737 383 18 16 731 57 772 0.0 542
Msa0577380 MtrunA17_Chr8g0354771 42.743 751 392 18 1 729 30 764 0.0 538
Msa0577380 MtrunA17_Chr4g0057531 42.204 744 387 18 10 729 53 777 1.77e-177 527
Msa0577380 MtrunA17_Chr3g0136151 43.166 739 376 16 12 728 45 761 5.37e-175 520
Msa0577380 MtrunA17_Chr4g0037221 42.779 727 376 19 31 732 60 771 7.00e-174 517
Msa0577380 MtrunA17_Chr4g0057471 41.209 728 386 18 23 728 1 708 2.37e-173 514
Msa0577380 MtrunA17_Chr4g0053781 40.537 745 388 19 10 728 39 754 1.15e-172 514
Msa0577380 MtrunA17_Chr4g0076611 40.694 720 383 18 34 732 1 697 8.06e-172 509
Msa0577380 MtrunA17_Chr3g0143251 42.162 740 383 17 13 731 52 767 1.09e-171 511
Msa0577380 MtrunA17_Chr2g0285121 40.992 766 392 18 2 728 38 782 1.22e-167 501
Msa0577380 MtrunA17_Chr1g0152771 40.457 744 397 13 9 727 39 761 2.36e-166 498
Msa0577380 MtrunA17_Chr2g0285111 40.731 766 393 18 2 728 42 785 9.32e-166 497
Msa0577380 MtrunA17_Chr4g0020651 41.281 734 393 17 11 727 43 755 5.20e-165 494
Msa0577380 MtrunA17_Chr2g0300751 41.022 724 380 16 28 727 71 771 2.62e-164 493
Msa0577380 MtrunA17_Chr7g0250481 39.062 768 400 17 10 729 51 798 3.67e-164 493
Msa0577380 MtrunA17_Chr8g0354741 44.462 641 313 16 105 729 21 634 8.48e-163 484
Msa0577380 MtrunA17_Chr1g0204321 40.356 731 395 17 18 728 67 776 5.98e-162 487
Msa0577380 MtrunA17_Chr5g0401511 40.548 730 390 15 15 726 55 758 2.26e-161 485
Msa0577380 MtrunA17_Chr8g0344971 39.198 773 384 19 4 732 33 763 1.26e-160 483
Msa0577380 MtrunA17_Chr8g0344331 40.824 752 383 20 11 729 53 775 1.41e-158 478
Msa0577380 MtrunA17_Chr4g0057481 41.311 702 367 18 51 729 11 690 2.71e-158 474
Msa0577380 MtrunA17_Chr7g0246451 38.792 745 382 18 8 728 51 745 4.19e-158 476
Msa0577380 MtrunA17_Chr7g0250411 40.293 752 398 23 10 729 52 784 3.28e-157 475
Msa0577380 MtrunA17_Chr8g0334491 39.973 733 368 21 16 731 53 730 1.23e-156 471
Msa0577380 MtrunA17_Chr7g0250371 39.764 762 389 21 10 729 52 785 1.79e-156 473
Msa0577380 MtrunA17_Chr7g0227991 39.452 730 374 15 16 729 57 734 3.89e-156 470
Msa0577380 MtrunA17_Chr3g0079971 39.891 732 377 17 16 733 54 736 9.31e-156 469
Msa0577380 MtrunA17_Chr1g0170081 39.808 731 373 16 16 731 55 733 2.79e-155 468
Msa0577380 MtrunA17_Chr8g0351011 39.837 738 380 16 10 728 59 751 4.99e-155 468
Msa0577380 MtrunA17_Chr1g0146251 39.456 735 378 19 16 733 55 739 1.07e-154 467
Msa0577380 MtrunA17_Chr6g0470851 38.389 745 392 19 1 731 41 732 3.58e-154 465
Msa0577380 MtrunA17_Chr5g0398241 40.915 721 386 13 17 728 64 753 4.26e-153 463
Msa0577380 MtrunA17_Chr6g0470881 38.710 744 391 18 1 731 41 732 7.42e-153 462
Msa0577380 MtrunA17_Chr3g0134621 39.646 734 371 17 16 727 51 734 1.20e-152 461
Msa0577380 MtrunA17_Chr4g0057461 42.130 648 323 18 111 728 3 628 6.85e-152 456
Msa0577380 MtrunA17_Chr4g0070391 40.449 712 387 16 34 727 58 750 8.50e-152 460
Msa0577380 MtrunA17_Chr7g0250391 38.874 764 392 19 10 729 51 783 1.39e-151 460
Msa0577380 MtrunA17_Chr8g0334521 38.503 735 378 19 15 731 58 736 4.91e-151 457
Msa0577380 MtrunA17_Chr5g0398401 40.499 721 389 13 17 728 64 753 2.52e-150 456
Msa0577380 MtrunA17_Chr4g0057061 39.595 740 398 18 2 728 71 774 3.56e-149 454
Msa0577380 MtrunA17_Chr1g0146271 37.893 731 393 16 16 733 55 737 4.21e-149 452
Msa0577380 MtrunA17_Chr7g0246461 39.381 711 364 16 34 728 80 739 1.28e-148 451
Msa0577380 MtrunA17_Chr7g0266051 39.195 745 385 20 11 733 12 710 3.54e-148 449
Msa0577380 MtrunA17_Chr7g0248871 37.983 724 398 17 26 728 70 763 9.30e-148 450
Msa0577380 MtrunA17_Chr4g0057491 41.471 639 335 15 111 729 3 622 1.06e-147 445
Msa0577380 MtrunA17_Chr5g0423261 42.056 642 329 17 110 729 2 622 2.43e-147 444
Msa0577380 MtrunA17_Chr1g0189561 38.589 723 389 20 34 733 75 765 1.18e-146 447
Msa0577380 MtrunA17_Chr8g0345971 39.864 735 370 19 20 728 70 758 2.50e-146 446
Msa0577380 MtrunA17_Chr7g0250331 38.442 770 410 19 10 729 52 807 3.16e-146 447
Msa0577380 MtrunA17_Chr4g0057511 41.130 637 330 17 115 729 3 616 7.67e-146 440
Msa0577380 MtrunA17_Chr8g0345981 40.358 726 375 20 34 734 71 763 2.82e-145 443
Msa0577380 MtrunA17_Chr1g0189251 38.019 747 401 17 15 735 50 760 3.36e-145 443
Msa0577380 MtrunA17_Chr8g0345991 39.669 726 378 21 34 734 69 759 4.48e-144 440
Msa0577380 MtrunA17_Chr5g0398331 39.161 715 385 16 27 728 73 750 1.81e-142 436
Msa0577380 MtrunA17_Chr5g0398351 40.000 730 395 14 7 728 39 733 2.85e-142 453
Msa0577380 MtrunA17_Chr5g0398351 39.889 722 392 14 17 728 815 1504 2.25e-140 448
Msa0577380 MtrunA17_Chr5g0398311 38.714 731 395 16 10 728 57 746 9.83e-142 434
Msa0577380 MtrunA17_Chr7g0276151 38.280 721 389 17 34 734 77 761 3.18e-134 414
Msa0577380 MtrunA17_Chr8g0345961 37.221 763 405 19 4 733 40 761 5.35e-132 409
Msa0577380 MtrunA17_Chr2g0303881 38.409 729 383 19 34 734 41 731 2.67e-130 403
Msa0577380 MtrunA17_Chr8g0376841 41.071 560 284 10 10 552 54 584 2.80e-123 380
Msa0577380 MtrunA17_Chr7g0248861 39.267 573 305 12 30 587 77 621 8.11e-119 377
Msa0577380 MtrunA17_Chr7g0248861 51.639 244 98 8 97 335 632 860 2.15e-57 210
Msa0577380 MtrunA17_Chr5g0439271 39.251 614 320 18 148 728 8 601 7.76e-110 346
Msa0577380 MtrunA17_Chr2g0301011 38.407 565 254 15 63 618 4 483 1.81e-104 328
Msa0577380 MtrunA17_Chr4g0035881 47.861 374 127 5 190 552 4 320 6.87e-100 310
Msa0577380 MtrunA17_Chr3g0143241 42.506 447 221 9 13 448 52 473 2.36e-99 317
Msa0577380 MtrunA17_Chr4g0071871 33.333 768 437 27 13 729 71 814 5.51e-94 310
Msa0577380 MtrunA17_Chr2g0298601 33.419 778 444 29 3 726 54 811 3.51e-93 308
Msa0577380 MtrunA17_Chr7g0250461 40.431 418 227 9 10 417 52 457 1.68e-88 286
Msa0577380 MtrunA17_Chr4g0075331 33.112 752 440 25 23 728 3 737 3.23e-87 290
Msa0577380 MtrunA17_Chr2g0302951 31.421 767 454 24 14 728 92 838 4.97e-87 292
Msa0577380 MtrunA17_Chr5g0447171 37.718 517 245 14 273 729 9 508 9.86e-86 280
Msa0577380 MtrunA17_Chr8g0380961 31.090 743 448 22 35 728 118 845 8.75e-77 264
Msa0577380 MtrunA17_Chr7g0261691 41.595 351 179 11 107 447 13 347 4.65e-75 246
Msa0577380 MtrunA17_Chr4g0026651 45.338 311 136 6 49 334 2 303 6.55e-75 244
Msa0577380 MtrunA17_Chr3g0097061 45.152 330 145 8 63 388 4 301 5.22e-74 246
Msa0577380 MtrunA17_Chr3g0097061 41.739 115 58 1 514 628 336 441 1.75e-23 104
Msa0577380 MtrunA17_Chr6g0480721 45.455 308 145 6 34 340 5 290 9.21e-74 251
Msa0577380 MtrunA17_Chr6g0480721 39.739 307 160 7 434 728 306 599 6.54e-54 196
Msa0577380 MtrunA17_Chr3g0105461 43.614 321 126 8 13 331 51 318 4.74e-63 214
Msa0577380 MtrunA17_Chr7g0261701 40.940 298 159 7 438 728 2 289 6.95e-63 212
Msa0577380 MtrunA17_Chr3g0105451 42.806 278 144 6 458 728 9 278 6.57e-59 201
Msa0577380 MtrunA17_Chr4g0026661 40.392 255 145 3 484 733 12 264 3.63e-56 192
Msa0577380 MtrunA17_Chr8g0346361 38.562 306 159 6 441 731 208 499 5.72e-56 199
Msa0577380 MtrunA17_Chr8g0346361 47.465 217 84 6 123 337 3 191 1.83e-47 176
Msa0577380 MtrunA17_Chr2g0301911 35.946 370 196 10 122 487 28 360 2.01e-55 194
Msa0577380 MtrunA17_Chr7g0250441 41.219 279 150 7 461 729 9 283 3.06e-55 192
Msa0577380 MtrunA17_Chr3g0103061 42.601 223 114 3 10 228 48 260 9.81e-54 186
Msa0577380 MtrunA17_Chr2g0301031 39.615 260 138 5 484 733 1 251 1.90e-52 182
Msa0577380 MtrunA17_Chr2g0312861 39.922 258 136 5 484 731 1 249 2.82e-52 184
Msa0577380 MtrunA17_Chr3g0103071 38.636 264 152 5 241 499 1 259 3.40e-48 171
Msa0577380 MtrunA17_Chr2g0312841 46.117 206 86 4 123 328 8 188 4.58e-46 162
Msa0577380 MtrunA17_Chr2g0301921 39.815 216 116 5 518 729 1 206 6.50e-43 154
Msa0577380 MtrunA17_Chr4g0035871 54.000 150 67 1 1 148 1 150 7.36e-42 149
Msa0577380 MtrunA17_Chr2g0301021 30.729 384 143 12 14 386 53 324 6.69e-33 131
Msa0577380 MtrunA17_Chr4g0071191 35.931 231 126 6 438 657 31 250 1.23e-32 126
Msa0577380 MtrunA17_Chr5g0434941 82.432 74 13 0 246 319 1 74 3.61e-32 119
Msa0577380 MtrunA17_Chr5g0436021 44.318 176 80 5 149 324 31 188 1.30e-30 119
Msa0577380 MtrunA17_Chr3g0143021 51.429 105 49 1 31 135 4 106 2.39e-29 112
Msa0577380 MtrunA17_Chr3g0142981 44.068 177 58 4 179 344 48 194 7.09e-28 111
Msa0577380 MtrunA17_Chr5g0418921 47.794 136 64 2 453 581 1 136 2.34e-27 109
Msa0577380 MtrunA17_Chr5g0439281 38.926 149 83 3 10 150 49 197 2.57e-27 109
Msa0577380 MtrunA17_Chr3g0103081 37.671 146 86 3 586 729 1 143 5.44e-26 104
Msa0577380 MtrunA17_Chr3g0143231 65.169 89 23 2 468 549 2 89 1.21e-25 101
Msa0577380 MtrunA17_Chr5g0447151 44.340 106 56 1 10 112 50 155 1.23e-23 97.8
Msa0577380 MtrunA17_Chr3g0142971 63.529 85 23 2 468 545 2 85 4.53e-23 94.0
Msa0577380 MtrunA17_Chr5g0436031 35.519 183 107 5 552 728 3 180 1.19e-22 97.1
Msa0577380 MtrunA17_Chr4g0057501 41.905 105 59 1 10 112 26 130 1.25e-19 85.5
Msa0577380 MtrunA17_Chr3g0142961 36.220 127 74 4 570 689 13 139 1.99e-17 79.7
Msa0577380 MtrunA17_Chr8g0346351 40.000 110 61 2 15 124 55 159 1.96e-16 77.8
Msa0577380 MtrunA17_Chr8g0376851 31.214 173 101 5 567 728 6 171 2.00e-16 77.8
Msa0577380 MtrunA17_Chr3g0143221 33.735 166 87 6 570 728 13 162 9.29e-16 75.5
Msa0577380 MtrunA17_Chr5g0398341 40.625 96 55 1 518 613 1 94 4.79e-15 71.2
Msa0577380 MtrunA17_Chr7g0261681 41.975 81 44 1 34 111 1 81 1.25e-14 70.5
Msa0577380 MtrunA17_Chr4g0057521 42.353 85 47 1 28 110 13 97 7.31e-14 70.1
Msa0577380 MtrunA17_Chr8g0354731 39.048 105 56 3 9 110 70 169 4.38e-13 68.2
Msa0577380 MtrunA17_Chr1g0171421 46.269 67 36 0 10 76 58 124 4.39e-13 67.0
Msa0577380 MtrunA17_Chr3g0121211 49.180 61 29 1 272 330 18 78 8.54e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577380 AT1G32960.1 51.289 737 346 9 1 730 37 767 0.0 740
Msa0577380 AT4G10540.1 49.457 736 361 8 1 730 35 765 0.0 728
Msa0577380 AT4G10550.3 50.136 736 355 9 1 730 55 784 0.0 726
Msa0577380 AT4G10550.1 50.339 737 352 10 1 730 39 768 0.0 726
Msa0577380 AT4G10520.1 50.205 733 342 10 1 730 34 746 0.0 726
Msa0577380 AT1G32940.1 51.153 737 347 9 1 730 34 764 0.0 720
Msa0577380 AT4G10510.1 49.393 741 362 10 1 735 27 760 0.0 710
Msa0577380 AT4G10510.3 49.393 741 362 10 1 735 39 772 0.0 710
Msa0577380 AT1G32950.1 50.676 740 345 10 1 730 34 763 0.0 709
Msa0577380 AT4G10550.4 50.418 718 344 9 19 730 1 712 0.0 708
Msa0577380 AT4G10550.2 50.418 718 344 9 19 730 1 712 0.0 708
Msa0577380 AT1G32940.4 51.460 719 336 9 19 730 1 713 0.0 702
Msa0577380 AT1G32940.2 51.460 719 336 9 19 730 1 713 0.0 702
Msa0577380 AT1G32950.2 51.108 722 333 10 19 730 1 712 0.0 692
Msa0577380 AT4G10510.4 49.654 723 351 10 19 735 1 716 0.0 692
Msa0577380 AT4G10530.1 48.361 732 348 10 1 730 34 737 0.0 692
Msa0577380 AT4G21650.1 50.533 750 318 12 1 730 46 762 0.0 691
Msa0577380 AT4G10510.2 49.153 708 347 10 34 735 1 701 0.0 674
Msa0577380 AT4G21630.1 49.664 743 330 12 1 730 44 755 0.0 668
Msa0577380 AT1G66220.1 47.814 732 353 11 1 730 42 746 0.0 659
Msa0577380 AT5G11940.1 45.726 737 379 5 1 735 42 759 0.0 656
Msa0577380 AT4G21640.1 47.122 747 315 11 1 730 46 729 0.0 632
Msa0577380 AT1G66210.1 45.590 737 375 10 1 735 45 757 0.0 627
Msa0577380 AT4G21323.1 43.978 739 377 14 1 730 85 795 0.0 589
Msa0577380 AT1G32970.1 44.082 735 367 12 1 730 29 724 0.0 578
Msa0577380 AT2G04160.1 42.838 747 392 16 1 729 42 771 0.0 555
Msa0577380 AT1G32940.3 52.330 558 254 8 1 551 34 586 0.0 555
Msa0577380 AT1G04110.1 43.119 763 373 19 4 728 31 770 0.0 550
Msa0577380 AT4G21326.1 42.697 712 383 6 19 729 1 688 0.0 543
Msa0577380 AT1G20160.2 43.194 720 367 17 32 730 26 724 0.0 535
Msa0577380 AT1G20160.1 43.333 720 366 17 32 730 65 763 0.0 535
Msa0577380 AT4G26330.2 43.172 725 374 17 26 728 13 721 0.0 535
Msa0577380 AT4G26330.1 42.355 739 374 18 26 728 13 735 3.74e-177 525
Msa0577380 AT5G59810.1 41.257 732 389 14 16 729 67 775 2.98e-175 521
Msa0577380 AT4G34980.1 43.191 727 372 18 26 728 49 758 1.09e-174 520
Msa0577380 AT5G67360.1 41.644 730 386 17 16 728 48 754 6.99e-174 517
Msa0577380 AT1G20150.1 41.789 749 372 18 16 728 50 770 4.74e-173 516
Msa0577380 AT3G14067.1 41.949 739 383 18 15 729 52 768 9.37e-170 507
Msa0577380 AT5G45650.2 40.956 774 389 21 2 728 36 788 1.52e-169 507
Msa0577380 AT5G45650.1 40.956 774 389 21 2 728 36 788 1.52e-169 507
Msa0577380 AT3G14240.1 40.921 738 373 18 33 732 61 773 3.12e-166 498
Msa0577380 AT2G05920.1 41.113 737 387 18 16 733 46 754 4.47e-161 484
Msa0577380 AT5G51750.1 40.499 721 392 15 27 728 72 774 1.55e-158 478
Msa0577380 AT5G59090.2 39.615 727 370 16 16 728 52 723 4.19e-152 460
Msa0577380 AT5G59090.1 39.835 728 372 17 16 728 52 728 6.99e-152 460
Msa0577380 AT5G59090.3 39.835 728 370 18 16 728 52 726 3.01e-150 455
Msa0577380 AT4G00230.1 40.408 735 385 16 8 728 48 743 4.05e-150 456
Msa0577380 AT5G59130.3 37.720 737 380 20 16 733 15 691 1.16e-147 447
Msa0577380 AT1G01900.1 40.476 714 381 18 36 728 81 771 3.64e-147 449
Msa0577380 AT5G59190.1 38.608 733 381 17 15 732 14 692 4.37e-147 446
Msa0577380 AT5G59130.4 37.720 737 380 20 16 733 54 730 5.27e-147 447
Msa0577380 AT5G59120.1 39.427 733 378 18 16 733 51 732 8.46e-147 446
Msa0577380 AT3G46850.1 39.700 733 372 23 16 728 52 734 1.87e-145 443
Msa0577380 AT5G59130.1 37.720 737 376 21 16 733 54 726 3.20e-145 442
Msa0577380 AT5G03620.1 38.411 755 399 20 1 726 39 756 7.26e-145 442
Msa0577380 AT3G46840.1 39.071 732 377 19 16 728 53 734 6.93e-144 439
Msa0577380 AT5G58840.1 38.776 735 359 21 11 730 50 708 2.52e-143 437
Msa0577380 AT5G59130.2 37.805 738 368 21 16 733 54 720 5.29e-143 436
Msa0577380 AT5G59100.1 38.988 731 381 22 16 728 54 737 2.75e-142 435
Msa0577380 AT5G58830.1 38.409 729 357 19 16 728 53 705 4.96e-141 431
Msa0577380 AT4G15040.2 37.871 742 385 21 4 730 7 687 2.28e-137 421
Msa0577380 AT4G15040.1 37.871 742 385 21 4 730 7 687 2.28e-137 421
Msa0577380 AT5G58820.1 39.266 736 345 23 16 730 48 702 1.67e-136 419
Msa0577380 AT5G45640.1 38.005 742 381 23 43 731 39 754 2.10e-132 410
Msa0577380 AT5G67090.1 37.363 728 377 17 16 717 41 715 7.71e-127 395
Msa0577380 AT5G03620.2 40.957 564 295 12 1 551 39 577 7.82e-123 379
Msa0577380 AT4G00230.2 43.091 550 276 10 8 549 48 568 5.77e-121 375
Msa0577380 AT1G20160.3 43.892 483 244 11 32 505 65 529 3.63e-114 356
Msa0577380 AT5G58840.3 40.217 552 255 17 11 553 50 535 3.45e-113 353
Msa0577380 AT2G19170.1 32.893 757 443 24 17 726 70 808 1.39e-96 317
Msa0577380 AT2G19170.2 32.893 757 443 24 17 726 70 808 1.39e-96 317
Msa0577380 AT1G30600.1 33.290 769 437 24 14 728 80 826 6.42e-92 305
Msa0577380 AT2G39850.1 31.783 774 420 31 16 732 47 769 1.45e-91 303
Msa0577380 AT4G30020.3 33.030 769 427 25 17 726 70 809 4.92e-90 300
Msa0577380 AT4G30020.1 33.030 769 427 25 17 726 70 809 4.92e-90 300
Msa0577380 AT4G30020.4 33.030 769 427 25 17 726 70 809 4.92e-90 300
Msa0577380 AT4G30020.2 33.030 769 427 25 17 726 70 809 4.92e-90 300
Msa0577380 AT1G62340.1 32.603 776 444 25 13 731 79 832 8.79e-88 294
Msa0577380 AT5G58840.2 37.945 477 228 16 11 485 50 460 7.53e-84 274
Msa0577380 AT5G44530.1 31.200 750 438 24 35 728 106 833 2.29e-81 277
Msa0577380 AT4G20430.3 30.739 771 451 27 16 728 103 848 4.23e-81 276
Msa0577380 AT4G20430.1 30.739 771 451 27 16 728 103 848 4.23e-81 276
Msa0577380 AT4G20430.2 31.193 763 434 28 16 728 103 824 4.58e-80 273
Msa0577380 AT5G44530.2 30.353 794 447 27 16 728 90 858 1.15e-76 265
Msa0577380 AT1G32980.1 48.677 189 96 1 514 702 3 190 2.29e-53 182
Msa0577380 AT5G44530.3 31.765 510 285 18 35 499 106 597 6.08e-49 182
Msa0577380 AT5G59110.1 33.962 159 99 2 576 728 8 166 7.85e-22 93.6
Msa0577380 AT1G71950.1 48.485 66 34 0 10 75 60 125 3.86e-14 70.5

Find 178 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTTCAGCTGGAAATTC+TGG 0.217907 4_1:+81723196 Msa0577380:CDS
CAAAGACTGTTATAGGAAAA+TGG 0.220891 4_1:+81724302 Msa0577380:CDS
TGGAACCTTCTTCTGATATA+AGG 0.236585 4_1:-81725575 None:intergenic
AGCACCCGGTGTGGACATTT+TGG 0.276373 4_1:+81724960 Msa0577380:CDS
TTCGAAACGGTTTGAGAAAT+AGG 0.281095 4_1:-81723220 None:intergenic
TCACCTTGCTCTTCTAATAT+AGG 0.283071 4_1:-81724165 None:intergenic
CTTCAGGTTTGGAATTGATA+TGG 0.287368 4_1:-81725814 None:intergenic
AATTATAGAGGCCTTGCTTC+TGG 0.298733 4_1:+81722935 Msa0577380:CDS
TGAATATTAAACCGATGTTT+TGG 0.302345 4_1:+81726100 Msa0577380:exon
AGAAGAAGGTTCCACAAATA+AGG 0.303939 4_1:+81725584 Msa0577380:CDS
AAAATGTTATCTTCACTCTT+AGG 0.305045 4_1:+81721707 Msa0577380:CDS
TTGCATGGTGATTACAGATT+TGG 0.307057 4_1:+81726011 Msa0577380:CDS
CTAGAAGTTGGGACTTCATT+GGG 0.311848 4_1:+81722061 Msa0577380:CDS
CTTGATTTCTTGAAGGCATT+TGG 0.311910 4_1:+81722645 Msa0577380:intron
CCTGCATTGATTGCTTTGTT+AGG 0.315288 4_1:-81725645 None:intergenic
GTTGCAACTTGTAGTGGTTT+TGG 0.315811 4_1:-81725751 None:intergenic
GATCTTCTTGTTACAGTTTG+TGG 0.325361 4_1:-81722756 None:intergenic
AGTGGATTCATATTCTTATC+TGG 0.334970 4_1:+81725015 Msa0577380:CDS
TTACTGTTGTATGACTCTTC+AGG 0.345235 4_1:-81725830 None:intergenic
GCTATAGTGAATAGTCCTTA+TGG 0.348636 4_1:+81725897 Msa0577380:CDS
ATCACAGTTGTTTCTTCAGC+TGG 0.356297 4_1:+81723187 Msa0577380:CDS
TGTTACCAAAGCTGATCTTA+TGG 0.357629 4_1:-81725115 None:intergenic
GATTGCCATCTGTCCATGTT+AGG 0.364733 4_1:-81726037 None:intergenic
GGTGCTAGATGGTTCCTAAA+AGG 0.369584 4_1:+81722782 Msa0577380:CDS
GTTGTATGACTCTTCAGGTT+TGG 0.378921 4_1:-81725825 None:intergenic
TACTTGCTATATCTTCTGCT+TGG 0.382876 4_1:-81721902 None:intergenic
TGGAAATAACCTTACTTTGT+GGG 0.383187 4_1:+81723312 Msa0577380:CDS
TGGTATACTTCCGTGCATTA+AGG 0.383715 4_1:+81724112 Msa0577380:CDS
ACTAGAAGTTGGGACTTCAT+TGG 0.388420 4_1:+81722060 Msa0577380:CDS
GACCCATGGAACATAGGAAT+TGG 0.390726 4_1:-81725701 None:intergenic
GGCTATACCTTTAGCACAGT+TGG 0.393179 4_1:-81724376 None:intergenic
TTAGATGATGGAAACTAATT+CGG 0.394916 4_1:+81721403 Msa0577380:five_prime_UTR
TGAAATGAAGCTTACGTTGA+AGG 0.396560 4_1:-81725979 None:intergenic
TGGCTATCTACAAAGCTTGC+TGG 0.398566 4_1:+81722990 Msa0577380:CDS
GGTTTAATATTCAAATTGTA+TGG 0.400861 4_1:-81726090 None:intergenic
GCAGCAGACCCATTTGATAT+CGG 0.401613 4_1:+81725606 Msa0577380:CDS
CAAACTCCTTTCCACTTGGA+TGG 0.402536 4_1:-81722710 None:intergenic
GATGTCTTAACTGTTTCTCT+TGG 0.405379 4_1:+81723085 Msa0577380:CDS
TGAGGATACCAATAGCTGTT+AGG 0.408815 4_1:+81726066 Msa0577380:CDS
TTAACTGTTTCTCTTGGCAT+TGG 0.414235 4_1:+81723091 Msa0577380:CDS
ACTTGCTATATCTTCTGCTT+GGG 0.417096 4_1:-81721901 None:intergenic
TGAAGTAAGGATTGTCAGTC+TGG 0.419249 4_1:+81723936 Msa0577380:intron
GATTCTTCTGCAAATATCTC+GGG 0.427428 4_1:-81721502 None:intergenic
TTGGAAATAACCTTACTTTG+TGG 0.427732 4_1:+81723311 Msa0577380:CDS
GAATTGAAGTTCAAAATTTG+AGG 0.429380 4_1:-81725939 None:intergenic
TTAGGTCAAGGAACCATCAT+AGG 0.431578 4_1:+81722126 Msa0577380:CDS
TGTATGGTCCTAACAGCTAT+TGG 0.434313 4_1:-81726074 None:intergenic
TTTCCAAGTGTAATGGCTGT+TGG 0.435517 4_1:-81723295 None:intergenic
AGAAACAACTGTGATACCTT+TGG 0.439366 4_1:-81723179 None:intergenic
AACACTCTCTTGGATTTGTC+GGG 0.440791 4_1:+81723428 Msa0577380:CDS
AGGTGACCAAGTTGGGTGTT+TGG 0.442891 4_1:-81725088 None:intergenic
AAACACTCTCTTGGATTTGT+CGG 0.443935 4_1:+81723427 Msa0577380:CDS
CAGCAGACCCATTTGATATC+GGG 0.446942 4_1:+81725607 Msa0577380:CDS
TATCCAATTCCTATGTTCCA+TGG 0.450910 4_1:+81725698 Msa0577380:CDS
GACAATGGAAAACACTCTCT+TGG 0.450936 4_1:+81723418 Msa0577380:CDS
CTTGTCTCCAACTGTGCTAA+AGG 0.451379 4_1:+81724369 Msa0577380:CDS
AGAAGATCATTGGTGCTAGA+TGG 0.451764 4_1:+81722771 Msa0577380:CDS
GATGAGAAAGATGCAACTCT+TGG 0.452575 4_1:-81724331 None:intergenic
TGCAGCCATAAGATCAGCTT+TGG 0.453854 4_1:+81725110 Msa0577380:CDS
TGAAGTTTGTGAATGCCATT+TGG 0.459168 4_1:-81722033 None:intergenic
AGATCAGCTTTGGTAACAAC+AGG 0.460348 4_1:+81725120 Msa0577380:CDS
CTGTAGTGTCATTGTTTCCA+AGG 0.462626 4_1:-81722832 None:intergenic
GCATCAGTACAGTGTCCAAC+AGG 0.464038 4_1:-81723019 None:intergenic
AAGGTTATTTCCAAGTGTAA+TGG 0.464304 4_1:-81723302 None:intergenic
ATTAAGGTAGATTATGAAGC+AGG 0.465394 4_1:+81724128 Msa0577380:CDS
TTGATATGGAAGGAAGGTTA+AGG 0.465571 4_1:-81725800 None:intergenic
AACTGTAACAAGAAGATCAT+TGG 0.465970 4_1:+81722761 Msa0577380:CDS
CAACGCGACACGATAGCAAT+TGG 0.470243 4_1:+81723139 Msa0577380:CDS
GTAAAGGAAGCTGGTGGAGT+TGG 0.470952 4_1:+81724047 Msa0577380:CDS
GCCTCTCAAAGCGGAACTGA+TGG 0.471189 4_1:+81725549 Msa0577380:intron
CTAGGTGCATATTGTATACA+TGG 0.473758 4_1:+81721637 Msa0577380:intron
TGGCTGCAGGTGACCAAGTT+GGG 0.475861 4_1:-81725095 None:intergenic
TCATTGAAACTTGCAGACTC+TGG 0.477549 4_1:-81722668 None:intergenic
GTAGTTTCTGTCATTCCAAA+TGG 0.480001 4_1:+81722018 Msa0577380:CDS
TGTAGCATACCCACAAAGTA+AGG 0.480458 4_1:-81723321 None:intergenic
TGATTCTTCTGCAAATATCT+CGG 0.481072 4_1:-81721503 None:intergenic
CACACTAAGAACCTCATCCT+TGG 0.483752 4_1:+81722815 Msa0577380:CDS
TGGAAAGGAGTTTGTCAAGT+TGG 0.485654 4_1:+81722719 Msa0577380:CDS
GTAGAAAATGCAAATTATAG+AGG 0.487178 4_1:+81722923 Msa0577380:CDS
CTCTCAGCTAGAGATGCTAT+TGG 0.487608 4_1:+81722860 Msa0577380:CDS
TGTCATTGTTTCCAAGGATG+AGG 0.488136 4_1:-81722826 None:intergenic
ACTTCACACAACTAGAAGTT+GGG 0.489273 4_1:+81722050 Msa0577380:CDS
TATGCACAGCGTCATGAAGA+TGG 0.492726 4_1:+81724077 Msa0577380:CDS
TTGACAAACTCCTTTCCACT+TGG 0.494530 4_1:-81722714 None:intergenic
CACACAGCTTCAACAGCAGC+TGG 0.497918 4_1:+81722893 Msa0577380:CDS
AACTTCACACAACTAGAAGT+TGG 0.498851 4_1:+81722049 Msa0577380:CDS
GAATTGGATATAATCCTTTG+TGG 0.499516 4_1:-81725685 None:intergenic
TTCTGCAGCACTTACAGTAA+AGG 0.500122 4_1:+81724031 Msa0577380:CDS
TAAAATCCAAACACCCAACT+TGG 0.501966 4_1:+81725082 Msa0577380:CDS
TAGCCATGTCAAATGCTTTG+AGG 0.503512 4_1:-81723048 None:intergenic
ACACCGGGTGCTGCTATGTC+CGG 0.508908 4_1:-81724949 None:intergenic
GGCTATCTACAAAGCTTGCT+GGG 0.512176 4_1:+81722991 Msa0577380:CDS
AAAGCTGATCTTATGGCTGC+AGG 0.512788 4_1:-81725108 None:intergenic
AGGAGCACCTTTAGCTCACT+TGG 0.515626 4_1:+81722970 Msa0577380:CDS
GATCAACATACGAAAACAAA+GGG 0.515737 4_1:-81723117 None:intergenic
ATGTCTTGTCCTCATGTGGC+AGG 0.515904 4_1:+81725045 Msa0577380:CDS
TGGGTCTGCTGCCTTATTTG+TGG 0.516001 4_1:-81725595 None:intergenic
AAACAAGAGATGTGCTAGAA+AGG 0.518017 4_1:+81721426 Msa0577380:five_prime_UTR
TTTCCAACAGCCATTACACT+TGG 0.522045 4_1:+81723292 Msa0577380:CDS
ATTAGAATCAAATAAGATTG+TGG 0.524670 4_1:+81726212 Msa0577380:three_prime_UTR
ATCCAATTCCTATGTTCCAT+GGG 0.525074 4_1:+81725699 Msa0577380:CDS
CCATGGTGCTGTATTCGAAA+CGG 0.533211 4_1:-81723233 None:intergenic
AGTTTCAATGATGAAGCAAT+GGG 0.533726 4_1:+81722680 Msa0577380:CDS
TAGATAGCCAAGTGAGCTAA+AGG 0.534407 4_1:-81722977 None:intergenic
ATTTCAACTCAAAAGTTGCA+TGG 0.536725 4_1:+81725996 Msa0577380:CDS
CTGAATGAAACAATGGCAGC+AGG 0.538323 4_1:+81723963 Msa0577380:CDS
GCTTGCTGGGACGTTCCTGT+TGG 0.538433 4_1:+81723004 Msa0577380:CDS
CTTCTTTATAGCTATAAACA+TGG 0.540098 4_1:+81721846 Msa0577380:CDS
GCTAGAGATGCTATTGGCCA+TGG 0.541370 4_1:+81722866 Msa0577380:CDS
CGGTAGTTAAGTATTCTTTG+AGG 0.541415 4_1:+81726182 Msa0577380:three_prime_UTR
GGAAAACTCAGCCTTGCAGT+TGG 0.542209 4_1:-81724280 None:intergenic
TATTATGACCCATGGAACAT+AGG 0.542775 4_1:-81725707 None:intergenic
TTGTTTGTTGCAACTTGTAG+TGG 0.543136 4_1:-81725757 None:intergenic
CTTTAGCACAGTTGGAGACA+AGG 0.546000 4_1:-81724368 None:intergenic
TTGGAATTGATATGGAAGGA+AGG 0.546129 4_1:-81725806 None:intergenic
TCCATCAGTTCCGCTTTGAG+AGG 0.546581 4_1:-81725550 None:intergenic
TGGATCACGTGCAATGCGCT+CGG 0.546600 4_1:-81723461 None:intergenic
CTTGCTTCTGGTTTAGCAAG+AGG 0.547357 4_1:+81722947 Msa0577380:CDS
TCTTTCCACGCAACTTCCAA+AGG 0.554837 4_1:+81723163 Msa0577380:CDS
ATGGCTGCAGGTGACCAAGT+TGG 0.555589 4_1:-81725096 None:intergenic
TTTGGCTGCATTTCCACCCA+AGG 0.561186 4_1:+81724978 Msa0577380:CDS
AAGTTTCAATGATGAAGCAA+TGG 0.562500 4_1:+81722679 Msa0577380:CDS
GCACTTACAGTAAAGGAAGC+TGG 0.562837 4_1:+81724038 Msa0577380:CDS
GGAATGACAGAAACTACCTC+TGG 0.565610 4_1:-81722012 None:intergenic
TGTGTCTATGACGCCTATGA+TGG 0.567504 4_1:-81722139 None:intergenic
TGTTATCTTCACTCTTAGGA+AGG 0.567791 4_1:+81721711 Msa0577380:CDS
AGGTTTGGAATTGATATGGA+AGG 0.568145 4_1:-81725810 None:intergenic
TTGAAGCTGTGTGAGTTCCA+TGG 0.569128 4_1:-81722883 None:intergenic
GCTGTCTACTGATTAGATGA+TGG 0.570869 4_1:+81721391 Msa0577380:five_prime_UTR
GCTTCTGGTTTAGCAAGAGG+AGG 0.571874 4_1:+81722950 Msa0577380:CDS
ACTGAAAGCAACTTAGGTCA+AGG 0.574792 4_1:+81722114 Msa0577380:CDS
ACAGTTGGAGACAAGGTACT+AGG 0.581400 4_1:-81724361 None:intergenic
GGAGGCCTTATATCAGAAGA+AGG 0.582543 4_1:+81725570 Msa0577380:CDS
CCTAACAAAGCAATCAATGC+AGG 0.582803 4_1:+81725645 Msa0577380:CDS
GTTGCATCTTTCTCATCTAG+AGG 0.585537 4_1:+81724337 Msa0577380:CDS
GCGCATTGCACGTGATCCAT+CGG 0.586568 4_1:+81723465 Msa0577380:CDS
AGCAGACCCATTTGATATCG+GGG 0.587889 4_1:+81725608 Msa0577380:CDS
AGATGCTGTATTATGACCCA+TGG 0.590460 4_1:-81725715 None:intergenic
TCTCAAAGCGGAACTGATGG+AGG 0.593016 4_1:+81725552 Msa0577380:CDS
CAAACTAATTGCCAAAACAT+CGG 0.597237 4_1:-81726111 None:intergenic
ATCAATGTCTTGTCCTCATG+TGG 0.603786 4_1:+81725041 Msa0577380:CDS
AAAATTCCATCCAAGTGGAA+AGG 0.604125 4_1:+81722704 Msa0577380:CDS
TGCAGCCAAAATGTCCACAC+CGG 0.604840 4_1:-81724965 None:intergenic
ACCATGGCTCATTACAGTTG+CGG 0.605785 4_1:+81723249 Msa0577380:CDS
GGAAGCCTAACATGGACAGA+TGG 0.610473 4_1:+81726032 Msa0577380:CDS
ACAGATTTGGAAGCCTAACA+TGG 0.611247 4_1:+81726024 Msa0577380:CDS
TTGGCTGCATTTCCACCCAA+GGG 0.612405 4_1:+81724979 Msa0577380:CDS
CAGGGACAGTCCATTGACAA+TGG 0.614731 4_1:+81723403 Msa0577380:intron
GTGGAAGGTTTCCAACTGCA+AGG 0.614861 4_1:+81724269 Msa0577380:intron
TGATCAACATACGAAAACAA+AGG 0.622316 4_1:-81723118 None:intergenic
CTCTTGCTAAACCAGAAGCA+AGG 0.626020 4_1:-81722946 None:intergenic
ATTCTTCTGCAAATATCTCG+GGG 0.626292 4_1:-81721501 None:intergenic
TAACCTATATTAGAAGAGCA+AGG 0.627264 4_1:+81724162 Msa0577380:CDS
TTAAGGTAGATTATGAAGCA+GGG 0.632035 4_1:+81724129 Msa0577380:CDS
TTGCGGCCACTACAATCGAT+AGG 0.633312 4_1:+81723266 Msa0577380:CDS
TCATAATCTACCTTAATGCA+CGG 0.633313 4_1:-81724122 None:intergenic
TAGCCGGACATAGCAGCACC+CGG 0.633717 4_1:+81724946 Msa0577380:intron
ATGAGAACAGTGACAAACGT+TGG 0.635977 4_1:+81725852 Msa0577380:CDS
TAGAAGTTGGGACTTCATTG+GGG 0.636639 4_1:+81722062 Msa0577380:CDS
GCAGCCAAAATGTCCACACC+GGG 0.637864 4_1:-81724964 None:intergenic
GCTGCTATTCCTGCCACATG+AGG 0.638035 4_1:-81725054 None:intergenic
GGACATAGCAGCACCCGGTG+TGG 0.639225 4_1:+81724951 Msa0577380:CDS
TGGAAGTCTGAATGAAACAA+TGG 0.642638 4_1:+81723956 Msa0577380:CDS
CATATACAACATTACCACAA+AGG 0.649217 4_1:+81725671 Msa0577380:CDS
TGATACCTTTGGAAGTTGCG+TGG 0.649399 4_1:-81723168 None:intergenic
AAAAGTCCTATCGATTGTAG+TGG 0.654640 4_1:-81723272 None:intergenic
ATCATAGGCGTCATAGACAC+AGG 0.655865 4_1:+81722141 Msa0577380:CDS
TCTCACGCTAAATCATCCGA+TGG 0.656781 4_1:-81723481 None:intergenic
GCAGACCCATTTGATATCGG+GGG 0.659152 4_1:+81725609 Msa0577380:CDS
TAGGTGCATATTGTATACAT+GGG 0.667259 4_1:+81721638 Msa0577380:intron
GCCGCAACTGTAATGAGCCA+TGG 0.676151 4_1:-81723250 None:intergenic
TATCCTCAAAGCATTTGACA+TGG 0.678885 4_1:+81723045 Msa0577380:CDS
AAAAGTGCAGCCTCTCAAAG+CGG 0.681198 4_1:+81725540 Msa0577380:intron
CTTACAGTAAAGGAAGCTGG+TGG 0.703562 4_1:+81724041 Msa0577380:CDS
GAAGATGGACTCAATGAATG+TGG 0.703870 4_1:+81724092 Msa0577380:CDS
ATACAATGTAGAGTTTCCAG+AGG 0.721115 4_1:+81721996 Msa0577380:intron
TTTGACATGGCTATACACGA+TGG 0.741019 4_1:+81723058 Msa0577380:CDS
CCGTTTCGAATACAGCACCA+TGG 0.744343 4_1:+81723233 Msa0577380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATGTAATGATAATTATT+AGG - chr4_1:81721769-81721788 None:intergenic 10.0%
!! AAAAAATATTATTATGTCAA+CGG - chr4_1:81723678-81723697 None:intergenic 10.0%
!!! GAGATTTTATATATATATTT+AGG - chr4_1:81723877-81723896 None:intergenic 10.0%
!!! TATTTTATAAAGAAAAGTTT+AGG - chr4_1:81725461-81725480 None:intergenic 10.0%
!!! TGAATTAATCAAATAATTTT+CGG + chr4_1:81726162-81726181 Msa0577380:three_prime_UTR 10.0%
!! TTAAAAACTAATCTTAATCA+TGG - chr4_1:81721943-81721962 None:intergenic 15.0%
!!! TTTAAAAAAGTGCTAAAAAT+AGG - chr4_1:81721967-81721986 None:intergenic 15.0%
!!! AATATTTTTTGTTGAAAACT+CGG + chr4_1:81723688-81723707 Msa0577380:intron 15.0%
!! TAACAAAAAATCTTAGAATT+TGG + chr4_1:81724589-81724608 Msa0577380:intron 15.0%
!!! GTTCTTTTATTTAATTTTGT+TGG - chr4_1:81724673-81724692 None:intergenic 15.0%
!!! AGCATTATATTTTTGTTTTA+TGG - chr4_1:81724861-81724880 None:intergenic 15.0%
!! ATTGAAATTTGAAGATAATT+TGG - chr4_1:81725188-81725207 None:intergenic 15.0%
!!! GAAGTTATTTATTTTTACTT+TGG - chr4_1:81725278-81725297 None:intergenic 15.0%
!! TTAATATTATTAAGCTCATG+TGG + chr4_1:81724250-81724269 Msa0577380:intron 20.0%
!! AAAAGTAAATAGAGAATTGT+TGG + chr4_1:81724471-81724490 Msa0577380:intron 20.0%
!!! CTAAGATTTTTTGTTATGTT+TGG - chr4_1:81724585-81724604 None:intergenic 20.0%
!!! ATGATATCAATATGTTTTCA+AGG + chr4_1:81724723-81724742 Msa0577380:intron 20.0%
!! ACTAAATAAATGTCTATTTG+AGG + chr4_1:81724804-81724823 Msa0577380:intron 20.0%
!! AAAAATATAATGCTCTTACA+TGG + chr4_1:81724867-81724886 Msa0577380:intron 20.0%
!! AAATTTGAAGATAATTTGGA+TGG - chr4_1:81725184-81725203 None:intergenic 20.0%
!!! CTAGTTAGTTTTGATATTAT+TGG - chr4_1:81725509-81725528 None:intergenic 20.0%
!! GGTTTAATATTCAAATTGTA+TGG - chr4_1:81726093-81726112 None:intergenic 20.0%
!! ATTAGAATCAAATAAGATTG+TGG + chr4_1:81726212-81726231 Msa0577380:three_prime_UTR 20.0%
!!! TTAGATGATGGAAACTAATT+CGG + chr4_1:81721403-81721422 Msa0577380:five_prime_UTR 25.0%
! CAATTACTACAAACTAAAGT+TGG - chr4_1:81721541-81721560 None:intergenic 25.0%
! TTTATTAAATGCATGTTCCT+AGG + chr4_1:81721619-81721638 Msa0577380:intron 25.0%
! AAAATGTTATCTTCACTCTT+AGG + chr4_1:81721707-81721726 Msa0577380:CDS 25.0%
! CTTCTTTATAGCTATAAACA+TGG + chr4_1:81721846-81721865 Msa0577380:CDS 25.0%
! AGATATAGCAAGTATGAATA+TGG + chr4_1:81721911-81721930 Msa0577380:intron 25.0%
! AACTAATCTTAATCATGGTA+AGG - chr4_1:81721938-81721957 None:intergenic 25.0%
!! GTTTTCATTTTCAAATGCTT+TGG - chr4_1:81722192-81722211 None:intergenic 25.0%
!!! CATTTTCATTTTCTAGTGTT+TGG - chr4_1:81722382-81722401 None:intergenic 25.0%
! CAAACACTAGAAAATGAAAA+TGG + chr4_1:81722380-81722399 Msa0577380:intron 25.0%
!! AAAATGGATTTCTTGCAATA+CGG + chr4_1:81722396-81722415 Msa0577380:intron 25.0%
! CAAGAAATCAAGTTTATCAT+TGG - chr4_1:81722637-81722656 None:intergenic 25.0%
! TGATAAACTTGATTTCTTGA+AGG + chr4_1:81722638-81722657 Msa0577380:intron 25.0%
! GTAGAAAATGCAAATTATAG+AGG + chr4_1:81722923-81722942 Msa0577380:CDS 25.0%
! TCTAGAGAAGAATTCAAATA+GGG - chr4_1:81723581-81723600 None:intergenic 25.0%
!! TTCTAGAGAAGAATTCAAAT+AGG - chr4_1:81723582-81723601 None:intergenic 25.0%
!! ATTTTACTCTTGGAATAAGT+AGG + chr4_1:81723845-81723864 Msa0577380:intron 25.0%
!!! CAAGTAAGAATTTTAAGGTT+GGG - chr4_1:81724400-81724419 None:intergenic 25.0%
!!! ACAAGTAAGAATTTTAAGGT+TGG - chr4_1:81724401-81724420 None:intergenic 25.0%
! ACCTTAAAATTCTTACTTGT+AGG + chr4_1:81724401-81724420 Msa0577380:intron 25.0%
!! ACCTACAAGTAAGAATTTTA+AGG - chr4_1:81724405-81724424 None:intergenic 25.0%
!! TTTAGAAAGAAAAGCACAAT+CGG + chr4_1:81724503-81724522 Msa0577380:intron 25.0%
! CAATTGTTTAAACTAATAGC+CGG - chr4_1:81724529-81724548 None:intergenic 25.0%
!!! TTTTTGTTATGTTTGGTTGA+AGG - chr4_1:81724578-81724597 None:intergenic 25.0%
!! CTTACATGGTTTTCAATTTA+TGG + chr4_1:81724881-81724900 Msa0577380:intron 25.0%
!! ACAGAAAGTAATTTTTGTGT+TGG + chr4_1:81725221-81725240 Msa0577380:intron 25.0%
!! TGTTGTTGTTGTAAAAGTTT+AGG - chr4_1:81725396-81725415 None:intergenic 25.0%
! GAATTGAAGTTCAAAATTTG+AGG - chr4_1:81725942-81725961 None:intergenic 25.0%
!! TGAATATTAAACCGATGTTT+TGG + chr4_1:81726100-81726119 Msa0577380:exon 25.0%
TGATTCTTCTGCAAATATCT+CGG - chr4_1:81721506-81721525 None:intergenic 30.0%
TAGGTGCATATTGTATACAT+GGG + chr4_1:81721638-81721657 Msa0577380:intron 30.0%
!! TGATACTTTTTAGCAGTTTC+TGG - chr4_1:81721683-81721702 None:intergenic 30.0%
! AGAGTGAAGATAACATTTTG+TGG - chr4_1:81721706-81721725 None:intergenic 30.0%
! AGCTATAAACATGGATTTTC+AGG + chr4_1:81721855-81721874 Msa0577380:CDS 30.0%
! GCTATAAACATGGATTTTCA+GGG + chr4_1:81721856-81721875 Msa0577380:CDS 30.0%
! TTCAGTGAAAACAGTTTTTG+AGG - chr4_1:81722100-81722119 None:intergenic 30.0%
TTTGGTTGGATATTTGTAAG+AGG - chr4_1:81722174-81722193 None:intergenic 30.0%
! TCATTTTCAAATGCTTTGGT+TGG - chr4_1:81722188-81722207 None:intergenic 30.0%
CTGAAATTTCTGATCTTAAC+CGG - chr4_1:81722254-81722273 None:intergenic 30.0%
!! TTCATTTTCTAGTGTTTGGT+TGG - chr4_1:81722378-81722397 None:intergenic 30.0%
! AAATGGATTTCTTGCAATAC+GGG + chr4_1:81722397-81722416 Msa0577380:intron 30.0%
GTTGTTTGATCTTAATTGGA+CGG - chr4_1:81722456-81722475 None:intergenic 30.0%
CTGAGTTGTTTGATCTTAAT+TGG - chr4_1:81722460-81722479 None:intergenic 30.0%
! TTTTTAAATGCGATTTACCG+AGG + chr4_1:81722501-81722520 Msa0577380:intron 30.0%
!!! GACAACTCATATTTTAACCT+CGG - chr4_1:81722521-81722540 None:intergenic 30.0%
TACACAAAATCCCTAGAAAA+CGG + chr4_1:81722598-81722617 Msa0577380:intron 30.0%
AAGTTTCAATGATGAAGCAA+TGG + chr4_1:81722679-81722698 Msa0577380:CDS 30.0%
AGTTTCAATGATGAAGCAAT+GGG + chr4_1:81722680-81722699 Msa0577380:CDS 30.0%
AACTGTAACAAGAAGATCAT+TGG + chr4_1:81722761-81722780 Msa0577380:CDS 30.0%
! TGTGATCAGTTATTCCTTTT+AGG - chr4_1:81722799-81722818 None:intergenic 30.0%
GATCAACATACGAAAACAAA+GGG - chr4_1:81723120-81723139 None:intergenic 30.0%
TGATCAACATACGAAAACAA+AGG - chr4_1:81723121-81723140 None:intergenic 30.0%
! AAGGTTATTTCCAAGTGTAA+TGG - chr4_1:81723305-81723324 None:intergenic 30.0%
TTGGAAATAACCTTACTTTG+TGG + chr4_1:81723311-81723330 Msa0577380:CDS 30.0%
TGGAAATAACCTTACTTTGT+GGG + chr4_1:81723312-81723331 Msa0577380:CDS 30.0%
CAACTACTTCTGTATCAAAT+TGG + chr4_1:81723342-81723361 Msa0577380:intron 30.0%
ACAGTTGATTGATATAATGC+AGG + chr4_1:81723384-81723403 Msa0577380:intron 30.0%
CAGTTGATTGATATAATGCA+GGG + chr4_1:81723385-81723404 Msa0577380:intron 30.0%
ACTATGAAATGAAGTAACTC+TGG + chr4_1:81723819-81723838 Msa0577380:intron 30.0%
TCATAATCTACCTTAATGCA+CGG - chr4_1:81724125-81724144 None:intergenic 30.0%
ATTAAGGTAGATTATGAAGC+AGG + chr4_1:81724128-81724147 Msa0577380:CDS 30.0%
TTAAGGTAGATTATGAAGCA+GGG + chr4_1:81724129-81724148 Msa0577380:CDS 30.0%
TAACCTATATTAGAAGAGCA+AGG + chr4_1:81724162-81724181 Msa0577380:CDS 30.0%
TATGCATAGATTGACAAGAT+TGG + chr4_1:81724200-81724219 Msa0577380:intron 30.0%
TATTATTAAGCTCATGTGGA+AGG + chr4_1:81724254-81724273 Msa0577380:intron 30.0%
! AGTTTTCCAAAGACTGTTAT+AGG + chr4_1:81724295-81724314 Msa0577380:CDS 30.0%
! CATTTTCCTATAACAGTCTT+TGG - chr4_1:81724304-81724323 None:intergenic 30.0%
CAAAGACTGTTATAGGAAAA+TGG + chr4_1:81724302-81724321 Msa0577380:CDS 30.0%
CAAATTTCAGAAACATGATC+TGG - chr4_1:81724446-81724465 None:intergenic 30.0%
! TAAATAGAGAATTGTTGGCT+AGG + chr4_1:81724476-81724495 Msa0577380:intron 30.0%
ATTTGGATTAAGTCTAACTC+AGG + chr4_1:81724606-81724625 Msa0577380:intron 30.0%
ATCCTACAATACTACAGATA+TGG - chr4_1:81724649-81724668 None:intergenic 30.0%
! AGTGGATTCATATTCTTATC+TGG + chr4_1:81725015-81725034 Msa0577380:CDS 30.0%
TGTAAAAGTTTAGGTGAGTT+GGG - chr4_1:81725387-81725406 None:intergenic 30.0%
TTGTAAAAGTTTAGGTGAGT+TGG - chr4_1:81725388-81725407 None:intergenic 30.0%
CATATACAACATTACCACAA+AGG + chr4_1:81725671-81725690 Msa0577380:CDS 30.0%
GAATTGGATATAATCCTTTG+TGG - chr4_1:81725688-81725707 None:intergenic 30.0%
!! ACTCTCACTTTTATACCATA+AGG - chr4_1:81725915-81725934 None:intergenic 30.0%
ATTTCAACTCAAAAGTTGCA+TGG + chr4_1:81725996-81726015 Msa0577380:CDS 30.0%
CAAACTAATTGCCAAAACAT+CGG - chr4_1:81726114-81726133 None:intergenic 30.0%
AAACAAGAGATGTGCTAGAA+AGG + chr4_1:81721426-81721445 Msa0577380:five_prime_UTR 35.0%
ATTCTTCTGCAAATATCTCG+GGG - chr4_1:81721504-81721523 None:intergenic 35.0%
GATTCTTCTGCAAATATCTC+GGG - chr4_1:81721505-81721524 None:intergenic 35.0%
CATGTATACAATATGCACCT+AGG - chr4_1:81721639-81721658 None:intergenic 35.0%
CTAGGTGCATATTGTATACA+TGG + chr4_1:81721637-81721656 Msa0577380:intron 35.0%
TGTTATCTTCACTCTTAGGA+AGG + chr4_1:81721711-81721730 Msa0577380:CDS 35.0%
!! ACTTGCTATATCTTCTGCTT+GGG - chr4_1:81721904-81721923 None:intergenic 35.0%
!! TACTTGCTATATCTTCTGCT+TGG - chr4_1:81721905-81721924 None:intergenic 35.0%
ATACAATGTAGAGTTTCCAG+AGG + chr4_1:81721996-81722015 Msa0577380:intron 35.0%
GTAGTTTCTGTCATTCCAAA+TGG + chr4_1:81722018-81722037 Msa0577380:CDS 35.0%
TGAAGTTTGTGAATGCCATT+TGG - chr4_1:81722036-81722055 None:intergenic 35.0%
AACTTCACACAACTAGAAGT+TGG + chr4_1:81722049-81722068 Msa0577380:CDS 35.0%
ACTTCACACAACTAGAAGTT+GGG + chr4_1:81722050-81722069 Msa0577380:CDS 35.0%
!! GTGAAAACAGTTTTTGAGGA+GGG - chr4_1:81722096-81722115 None:intergenic 35.0%
!! AGTGAAAACAGTTTTTGAGG+AGG - chr4_1:81722097-81722116 None:intergenic 35.0%
! GTTTTCACTGAAAGCAACTT+AGG + chr4_1:81722108-81722127 Msa0577380:CDS 35.0%
ATGAGTTGTCCAGTGAAAAT+TGG + chr4_1:81722531-81722550 Msa0577380:intron 35.0%
!! CTTGATTTCTTGAAGGCATT+TGG + chr4_1:81722645-81722664 Msa0577380:intron 35.0%
AAAATTCCATCCAAGTGGAA+AGG + chr4_1:81722704-81722723 Msa0577380:CDS 35.0%
GATCTTCTTGTTACAGTTTG+TGG - chr4_1:81722759-81722778 None:intergenic 35.0%
! TATCCTCAAAGCATTTGACA+TGG + chr4_1:81723045-81723064 Msa0577380:CDS 35.0%
! GATGTCTTAACTGTTTCTCT+TGG + chr4_1:81723085-81723104 Msa0577380:CDS 35.0%
! TTAACTGTTTCTCTTGGCAT+TGG + chr4_1:81723091-81723110 Msa0577380:CDS 35.0%
AGAAACAACTGTGATACCTT+TGG - chr4_1:81723182-81723201 None:intergenic 35.0%
TTCGAAACGGTTTGAGAAAT+AGG - chr4_1:81723223-81723242 None:intergenic 35.0%
! AAAAGTCCTATCGATTGTAG+TGG - chr4_1:81723275-81723294 None:intergenic 35.0%
!! AGAGTGTTTTCCATTGTCAA+TGG - chr4_1:81723416-81723435 None:intergenic 35.0%
AAACACTCTCTTGGATTTGT+CGG + chr4_1:81723427-81723446 Msa0577380:CDS 35.0%
TGTGTATGAAGAAGGAAGAA+AGG - chr4_1:81723507-81723526 None:intergenic 35.0%
CTTCTTCATACACACAAACA+CGG + chr4_1:81723513-81723532 Msa0577380:intron 35.0%
TTCTTCATACACACAAACAC+GGG + chr4_1:81723514-81723533 Msa0577380:intron 35.0%
GGTGGCTATACAATATTCAA+CGG + chr4_1:81723765-81723784 Msa0577380:intron 35.0%
! ACTCTGGCAAATTTTACTCT+TGG + chr4_1:81723835-81723854 Msa0577380:intron 35.0%
!! CTATGTCTTCCTTTGAAGTA+AGG + chr4_1:81723923-81723942 Msa0577380:intron 35.0%
ACTGACAATCCTTACTTCAA+AGG - chr4_1:81723935-81723954 None:intergenic 35.0%
TGGAAGTCTGAATGAAACAA+TGG + chr4_1:81723956-81723975 Msa0577380:CDS 35.0%
TCACCTTGCTCTTCTAATAT+AGG - chr4_1:81724168-81724187 None:intergenic 35.0%
TATATTAGAAGAGCAAGGTG+AGG + chr4_1:81724167-81724186 Msa0577380:intron 35.0%
TGCCATATCTGTAGTATTGT+AGG + chr4_1:81724644-81724663 Msa0577380:intron 35.0%
GTTATATATTGCTTCTCTGC+TGG - chr4_1:81724755-81724774 None:intergenic 35.0%
! GAGAAATTCGATTTGAGTGA+AGG + chr4_1:81724775-81724794 Msa0577380:intron 35.0%
TAAAATCCAAACACCCAACT+TGG + chr4_1:81725082-81725101 Msa0577380:CDS 35.0%
TGTTACCAAAGCTGATCTTA+TGG - chr4_1:81725118-81725137 None:intergenic 35.0%
CGAACATCAACATAGTTGTT+TGG + chr4_1:81725151-81725170 Msa0577380:intron 35.0%
TGGAACCTTCTTCTGATATA+AGG - chr4_1:81725578-81725597 None:intergenic 35.0%
AGAAGAAGGTTCCACAAATA+AGG + chr4_1:81725584-81725603 Msa0577380:CDS 35.0%
TATCCAATTCCTATGTTCCA+TGG + chr4_1:81725698-81725717 Msa0577380:CDS 35.0%
ATCCAATTCCTATGTTCCAT+GGG + chr4_1:81725699-81725718 Msa0577380:CDS 35.0%
TATTATGACCCATGGAACAT+AGG - chr4_1:81725710-81725729 None:intergenic 35.0%
! TTGTTTGTTGCAACTTGTAG+TGG - chr4_1:81725760-81725779 None:intergenic 35.0%
TTGATATGGAAGGAAGGTTA+AGG - chr4_1:81725803-81725822 None:intergenic 35.0%
TTGGAATTGATATGGAAGGA+AGG - chr4_1:81725809-81725828 None:intergenic 35.0%
! AGGTTTGGAATTGATATGGA+AGG - chr4_1:81725813-81725832 None:intergenic 35.0%
! CTTCAGGTTTGGAATTGATA+TGG - chr4_1:81725817-81725836 None:intergenic 35.0%
TTACTGTTGTATGACTCTTC+AGG - chr4_1:81725833-81725852 None:intergenic 35.0%
GCTATAGTGAATAGTCCTTA+TGG + chr4_1:81725897-81725916 Msa0577380:CDS 35.0%
TGAAATGAAGCTTACGTTGA+AGG - chr4_1:81725982-81726001 None:intergenic 35.0%
TTGCATGGTGATTACAGATT+TGG + chr4_1:81726011-81726030 Msa0577380:CDS 35.0%
CGGTAGTTAAGTATTCTTTG+AGG + chr4_1:81726182-81726201 Msa0577380:three_prime_UTR 35.0%
! GCTGTCTACTGATTAGATGA+TGG + chr4_1:81721391-81721410 Msa0577380:five_prime_UTR 40.0%
TCTTCACTCTTAGGAAGGTA+TGG + chr4_1:81721716-81721735 Msa0577380:intron 40.0%
ACTAGAAGTTGGGACTTCAT+TGG + chr4_1:81722060-81722079 Msa0577380:CDS 40.0%
CTAGAAGTTGGGACTTCATT+GGG + chr4_1:81722061-81722080 Msa0577380:CDS 40.0%
TAGAAGTTGGGACTTCATTG+GGG + chr4_1:81722062-81722081 Msa0577380:CDS 40.0%
ACTGAAAGCAACTTAGGTCA+AGG + chr4_1:81722114-81722133 Msa0577380:CDS 40.0%
TTAGGTCAAGGAACCATCAT+AGG + chr4_1:81722126-81722145 Msa0577380:CDS 40.0%
CATTCATGCAGTCAGCAAAT+CGG + chr4_1:81722222-81722241 Msa0577380:intron 40.0%
CTGAGTCATCCGATGAAAAT+CGG + chr4_1:81722325-81722344 Msa0577380:intron 40.0%
! TAGCACCATCCGATTTTCAT+CGG - chr4_1:81722337-81722356 None:intergenic 40.0%
! GAAAATCGGATGGTGCTAAT+TGG + chr4_1:81722339-81722358 Msa0577380:intron 40.0%
CATTCATGCTGTCAGCAATT+TGG + chr4_1:81722428-81722447 Msa0577380:intron 40.0%
GTTGTCCAGTGAAAATTGGA+TGG + chr4_1:81722535-81722554 Msa0577380:intron 40.0%
! CTTCACCATCCAATTTTCAC+TGG - chr4_1:81722543-81722562 None:intergenic 40.0%
! TCTAGGGATTTTGTGTAGTC+AGG - chr4_1:81722595-81722614 None:intergenic 40.0%
!! CATTACAACGCCGTTTTCTA+GGG - chr4_1:81722611-81722630 None:intergenic 40.0%
!! ACATTACAACGCCGTTTTCT+AGG - chr4_1:81722612-81722631 None:intergenic 40.0%
TCATTGAAACTTGCAGACTC+TGG - chr4_1:81722671-81722690 None:intergenic 40.0%
TGGGAAAAATTCCATCCAAG+TGG + chr4_1:81722699-81722718 Msa0577380:CDS 40.0%
TTGACAAACTCCTTTCCACT+TGG - chr4_1:81722717-81722736 None:intergenic 40.0%
TGGAAAGGAGTTTGTCAAGT+TGG + chr4_1:81722719-81722738 Msa0577380:CDS 40.0%
!! AGAAGATCATTGGTGCTAGA+TGG + chr4_1:81722771-81722790 Msa0577380:CDS 40.0%
TGTCATTGTTTCCAAGGATG+AGG - chr4_1:81722829-81722848 None:intergenic 40.0%
! CTGTAGTGTCATTGTTTCCA+AGG - chr4_1:81722835-81722854 None:intergenic 40.0%
AATTATAGAGGCCTTGCTTC+TGG + chr4_1:81722935-81722954 Msa0577380:CDS 40.0%
TAGATAGCCAAGTGAGCTAA+AGG - chr4_1:81722980-81722999 None:intergenic 40.0%
TAGCCATGTCAAATGCTTTG+AGG - chr4_1:81723051-81723070 None:intergenic 40.0%
TTTGACATGGCTATACACGA+TGG + chr4_1:81723058-81723077 Msa0577380:CDS 40.0%
!! ATCACAGTTGTTTCTTCAGC+TGG + chr4_1:81723187-81723206 Msa0577380:CDS 40.0%
GTTTCTTCAGCTGGAAATTC+TGG + chr4_1:81723196-81723215 Msa0577380:CDS 40.0%
TTTCCAACAGCCATTACACT+TGG + chr4_1:81723292-81723311 Msa0577380:CDS 40.0%
TTTCCAAGTGTAATGGCTGT+TGG - chr4_1:81723298-81723317 None:intergenic 40.0%
TGTAGCATACCCACAAAGTA+AGG - chr4_1:81723324-81723343 None:intergenic 40.0%
GACAATGGAAAACACTCTCT+TGG + chr4_1:81723418-81723437 Msa0577380:CDS 40.0%
AACACTCTCTTGGATTTGTC+GGG + chr4_1:81723428-81723447 Msa0577380:CDS 40.0%
CGTGTTTGTGTGTATGAAGA+AGG - chr4_1:81723515-81723534 None:intergenic 40.0%
!! CTATAGGATTAGTCGGTTCT+TGG - chr4_1:81723722-81723741 None:intergenic 40.0%
AGAACCGACTAATCCTATAG+AGG + chr4_1:81723722-81723741 Msa0577380:intron 40.0%
! AAGGCCTCTATAGGATTAGT+CGG - chr4_1:81723729-81723748 None:intergenic 40.0%
GGCTATACAATATTCAACGG+TGG + chr4_1:81723768-81723787 Msa0577380:intron 40.0%
TGAAGTAAGGATTGTCAGTC+TGG + chr4_1:81723936-81723955 Msa0577380:intron 40.0%
TTCTGCAGCACTTACAGTAA+AGG + chr4_1:81724031-81724050 Msa0577380:CDS 40.0%
! GAAGATGGACTCAATGAATG+TGG + chr4_1:81724092-81724111 Msa0577380:CDS 40.0%
TGGTATACTTCCGTGCATTA+AGG + chr4_1:81724112-81724131 Msa0577380:CDS 40.0%
GATGAGAAAGATGCAACTCT+TGG - chr4_1:81724334-81724353 None:intergenic 40.0%
GTTGCATCTTTCTCATCTAG+AGG + chr4_1:81724337-81724356 Msa0577380:CDS 40.0%
TGGATTAAGTCTAACTCAGG+TGG + chr4_1:81724609-81724628 Msa0577380:intron 40.0%
ATCATAACCTGCACTCTTCT+GGG + chr4_1:81724908-81724927 Msa0577380:intron 40.0%
GAATGACTGATGGAAATAGC+CGG + chr4_1:81724930-81724949 Msa0577380:intron 40.0%
! CTGCTCTTTTTACTTCCCTT+GGG - chr4_1:81724997-81725016 None:intergenic 40.0%
! ACTGCTCTTTTTACTTCCCT+TGG - chr4_1:81724998-81725017 None:intergenic 40.0%
AAGGGAAGTAAAAAGAGCAG+TGG + chr4_1:81724997-81725016 Msa0577380:CDS 40.0%
ATCAATGTCTTGTCCTCATG+TGG + chr4_1:81725041-81725060 Msa0577380:CDS 40.0%
! AGATCAGCTTTGGTAACAAC+AGG + chr4_1:81725120-81725139 Msa0577380:CDS 40.0%
! TTTAGGTGAGTTGGGTCTTA+GGG - chr4_1:81725379-81725398 None:intergenic 40.0%
!! CCTGCATTGATTGCTTTGTT+AGG - chr4_1:81725648-81725667 None:intergenic 40.0%
CCTAACAAAGCAATCAATGC+AGG + chr4_1:81725645-81725664 Msa0577380:CDS 40.0%
AGATGCTGTATTATGACCCA+TGG - chr4_1:81725718-81725737 None:intergenic 40.0%
! GTTGCAACTTGTAGTGGTTT+TGG - chr4_1:81725754-81725773 None:intergenic 40.0%
! GTTGTATGACTCTTCAGGTT+TGG - chr4_1:81725828-81725847 None:intergenic 40.0%
ATGAGAACAGTGACAAACGT+TGG + chr4_1:81725852-81725871 Msa0577380:CDS 40.0%
ACAGATTTGGAAGCCTAACA+TGG + chr4_1:81726024-81726043 Msa0577380:CDS 40.0%
! CAGATGGCAATCATTTTGTG+AGG + chr4_1:81726048-81726067 Msa0577380:CDS 40.0%
TGAGGATACCAATAGCTGTT+AGG + chr4_1:81726066-81726085 Msa0577380:CDS 40.0%
TGTATGGTCCTAACAGCTAT+TGG - chr4_1:81726077-81726096 None:intergenic 40.0%
GGAATGACAGAAACTACCTC+TGG - chr4_1:81722015-81722034 None:intergenic 45.0%
!! CAGTTTTTGAGGAGGGATGA+TGG - chr4_1:81722089-81722108 None:intergenic 45.0%
TGTGTCTATGACGCCTATGA+TGG - chr4_1:81722142-81722161 None:intergenic 45.0%
ATCATAGGCGTCATAGACAC+AGG + chr4_1:81722141-81722160 Msa0577380:CDS 45.0%
GTCATCCGATGAAAATCGGA+TGG + chr4_1:81722329-81722348 Msa0577380:intron 45.0%
CAAACTCCTTTCCACTTGGA+TGG - chr4_1:81722713-81722732 None:intergenic 45.0%
GGTGCTAGATGGTTCCTAAA+AGG + chr4_1:81722782-81722801 Msa0577380:CDS 45.0%
CACACTAAGAACCTCATCCT+TGG + chr4_1:81722815-81722834 Msa0577380:CDS 45.0%
CTCTCAGCTAGAGATGCTAT+TGG + chr4_1:81722860-81722879 Msa0577380:CDS 45.0%
TTGAAGCTGTGTGAGTTCCA+TGG - chr4_1:81722886-81722905 None:intergenic 45.0%
CTCTTGCTAAACCAGAAGCA+AGG - chr4_1:81722949-81722968 None:intergenic 45.0%
!! CTTGCTTCTGGTTTAGCAAG+AGG + chr4_1:81722947-81722966 Msa0577380:CDS 45.0%
TGGCTATCTACAAAGCTTGC+TGG + chr4_1:81722990-81723009 Msa0577380:CDS 45.0%
! GGCTATCTACAAAGCTTGCT+GGG + chr4_1:81722991-81723010 Msa0577380:CDS 45.0%
TCTTTCCACGCAACTTCCAA+AGG + chr4_1:81723163-81723182 Msa0577380:CDS 45.0%
! TGATACCTTTGGAAGTTGCG+TGG - chr4_1:81723171-81723190 None:intergenic 45.0%
!! CCATGGTGCTGTATTCGAAA+CGG - chr4_1:81723236-81723255 None:intergenic 45.0%
ACCATGGCTCATTACAGTTG+CGG + chr4_1:81723249-81723268 Msa0577380:CDS 45.0%
TCTCACGCTAAATCATCCGA+TGG - chr4_1:81723484-81723503 None:intergenic 45.0%
!! GGATTAGTCGGTTCTTGGAT+CGG - chr4_1:81723717-81723736 None:intergenic 45.0%
CTGAATGAAACAATGGCAGC+AGG + chr4_1:81723963-81723982 Msa0577380:CDS 45.0%
GCACTTACAGTAAAGGAAGC+TGG + chr4_1:81724038-81724057 Msa0577380:CDS 45.0%
CTTACAGTAAAGGAAGCTGG+TGG + chr4_1:81724041-81724060 Msa0577380:CDS 45.0%
TATGCACAGCGTCATGAAGA+TGG + chr4_1:81724077-81724096 Msa0577380:CDS 45.0%
! ACAGTTGGAGACAAGGTACT+AGG - chr4_1:81724364-81724383 None:intergenic 45.0%
CTTTAGCACAGTTGGAGACA+AGG - chr4_1:81724371-81724390 None:intergenic 45.0%
CTTGTCTCCAACTGTGCTAA+AGG + chr4_1:81724369-81724388 Msa0577380:CDS 45.0%
GGCTATACCTTTAGCACAGT+TGG - chr4_1:81724379-81724398 None:intergenic 45.0%
! GAAAGAAAAGCACAATCGGC+CGG + chr4_1:81724507-81724526 Msa0577380:intron 45.0%
CATCATAACCTGCACTCTTC+TGG + chr4_1:81724907-81724926 Msa0577380:intron 45.0%
! ACTCTTCTGGGAATGACTGA+TGG + chr4_1:81724920-81724939 Msa0577380:intron 45.0%
! CTCTTTTTACTTCCCTTGGG+TGG - chr4_1:81724994-81725013 None:intergenic 45.0%
AAAGCTGATCTTATGGCTGC+AGG - chr4_1:81725111-81725130 None:intergenic 45.0%
TGCAGCCATAAGATCAGCTT+TGG + chr4_1:81725110-81725129 Msa0577380:CDS 45.0%
! TTAGGTGAGTTGGGTCTTAG+GGG - chr4_1:81725378-81725397 None:intergenic 45.0%
! GTTTAGGTGAGTTGGGTCTT+AGG - chr4_1:81725380-81725399 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_1:81725418-81725437 Msa0577380:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_1:81725419-81725438 Msa0577380:intron 45.0%
! AAAAGTGCAGCCTCTCAAAG+CGG + chr4_1:81725540-81725559 Msa0577380:intron 45.0%
! GGAGGCCTTATATCAGAAGA+AGG + chr4_1:81725570-81725589 Msa0577380:CDS 45.0%
GCAGCAGACCCATTTGATAT+CGG + chr4_1:81725606-81725625 Msa0577380:CDS 45.0%
CAGCAGACCCATTTGATATC+GGG + chr4_1:81725607-81725626 Msa0577380:CDS 45.0%
AGCAGACCCATTTGATATCG+GGG + chr4_1:81725608-81725627 Msa0577380:CDS 45.0%
GACCCATGGAACATAGGAAT+TGG - chr4_1:81725704-81725723 None:intergenic 45.0%
GATTGCCATCTGTCCATGTT+AGG - chr4_1:81726040-81726059 None:intergenic 45.0%
GCTAGAGATGCTATTGGCCA+TGG + chr4_1:81722866-81722885 Msa0577380:CDS 50.0%
!! GCTTCTGGTTTAGCAAGAGG+AGG + chr4_1:81722950-81722969 Msa0577380:CDS 50.0%
!! AGGAGCACCTTTAGCTCACT+TGG + chr4_1:81722970-81722989 Msa0577380:CDS 50.0%
GCATCAGTACAGTGTCCAAC+AGG - chr4_1:81723022-81723041 None:intergenic 50.0%
CAACGCGACACGATAGCAAT+TGG + chr4_1:81723139-81723158 Msa0577380:CDS 50.0%
CCGTTTCGAATACAGCACCA+TGG + chr4_1:81723233-81723252 Msa0577380:CDS 50.0%
TTGCGGCCACTACAATCGAT+AGG + chr4_1:81723266-81723285 Msa0577380:CDS 50.0%
CAGGGACAGTCCATTGACAA+TGG + chr4_1:81723403-81723422 Msa0577380:intron 50.0%
TCCTATAGAGGCCTTGCTTC+TGG + chr4_1:81723734-81723753 Msa0577380:intron 50.0%
ACCAGAAGCAAGGCCTCTAT+AGG - chr4_1:81722939-81722958 None:intergenic 50.0%
!! GCCTTGCTTCTGGTTTAGCA+CGG + chr4_1:81722945-81722964 Msa0577380:CDS 50.0%
ACCGTGCTAAACCAGAAGCA+AGG - chr4_1:81723748-81723767 None:intergenic 50.0%
!! TTGCTTCTGGTTTAGCACGG+TGG + chr4_1:81723747-81723766 Msa0577380:intron 50.0%
GTAAAGGAAGCTGGTGGAGT+TGG + chr4_1:81724047-81724066 Msa0577380:CDS 50.0%
GTGGAAGGTTTCCAACTGCA+AGG + chr4_1:81724269-81724288 Msa0577380:intron 50.0%
GGAAAACTCAGCCTTGCAGT+TGG - chr4_1:81724283-81724302 None:intergenic 50.0%
! AGTCATTCCCAGAAGAGTGC+AGG - chr4_1:81724918-81724937 None:intergenic 50.0%
TGCAGCCAAAATGTCCACAC+CGG - chr4_1:81724968-81724987 None:intergenic 50.0%
TTTGGCTGCATTTCCACCCA+AGG + chr4_1:81724978-81724997 Msa0577380:CDS 50.0%
TTGGCTGCATTTCCACCCAA+GGG + chr4_1:81724979-81724998 Msa0577380:CDS 50.0%
ATGTCTTGTCCTCATGTGGC+AGG + chr4_1:81725045-81725064 Msa0577380:CDS 50.0%
! AGGTGACCAAGTTGGGTGTT+TGG - chr4_1:81725091-81725110 None:intergenic 50.0%
TACATCGCTCTCTGAGCCTT+AGG + chr4_1:81725333-81725352 Msa0577380:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_1:81725420-81725439 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_1:81725417-81725436 Msa0577380:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr4_1:81725423-81725442 Msa0577380:intron 50.0%
TGTAACCGACCCCACTTAGT+GGG - chr4_1:81725431-81725450 None:intergenic 50.0%
ATGTAACCGACCCCACTTAG+TGG - chr4_1:81725432-81725451 None:intergenic 50.0%
ACTAAGTGGGGTCGGTTACA+TGG + chr4_1:81725431-81725450 Msa0577380:intron 50.0%
! TCCATCAGTTCCGCTTTGAG+AGG - chr4_1:81725553-81725572 None:intergenic 50.0%
TCTCAAAGCGGAACTGATGG+AGG + chr4_1:81725552-81725571 Msa0577380:CDS 50.0%
!! TGGGTCTGCTGCCTTATTTG+TGG - chr4_1:81725598-81725617 None:intergenic 50.0%
GCAGACCCATTTGATATCGG+GGG + chr4_1:81725609-81725628 Msa0577380:CDS 50.0%
GTCCTCCCCCGATATCAAAT+GGG - chr4_1:81725617-81725636 None:intergenic 50.0%
TGTCCTCCCCCGATATCAAA+TGG - chr4_1:81725618-81725637 None:intergenic 50.0%
GGAAGCCTAACATGGACAGA+TGG + chr4_1:81726032-81726051 Msa0577380:CDS 50.0%
CACACAGCTTCAACAGCAGC+TGG + chr4_1:81722893-81722912 Msa0577380:CDS 55.0%
GCCGCAACTGTAATGAGCCA+TGG - chr4_1:81723253-81723272 None:intergenic 55.0%
TGGATCACGTGCAATGCGCT+CGG - chr4_1:81723464-81723483 None:intergenic 55.0%
GCGCATTGCACGTGATCCAT+CGG + chr4_1:81723465-81723484 Msa0577380:CDS 55.0%
! AGCACCCGGTGTGGACATTT+TGG + chr4_1:81724960-81724979 Msa0577380:CDS 55.0%
GCAGCCAAAATGTCCACACC+GGG - chr4_1:81724967-81724986 None:intergenic 55.0%
GCTGCTATTCCTGCCACATG+AGG - chr4_1:81725057-81725076 None:intergenic 55.0%
TGGCTGCAGGTGACCAAGTT+GGG - chr4_1:81725098-81725117 None:intergenic 55.0%
ATGGCTGCAGGTGACCAAGT+TGG - chr4_1:81725099-81725118 None:intergenic 55.0%
ACCAGGGTCAGACAAGCCTA+AGG - chr4_1:81725352-81725371 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr4_1:81725425-81725444 None:intergenic 55.0%
GCCTCTCAAAGCGGAACTGA+TGG + chr4_1:81725549-81725568 Msa0577380:intron 55.0%
GACCCATTTGATATCGGGGG+AGG + chr4_1:81725612-81725631 Msa0577380:CDS 55.0%
GTCAGCAAATCGGCGTCGTC+CGG + chr4_1:81722232-81722251 Msa0577380:intron 60.0%
! GCTTGCTGGGACGTTCCTGT+TGG + chr4_1:81723004-81723023 Msa0577380:CDS 60.0%
TAGCCGGACATAGCAGCACC+CGG + chr4_1:81724946-81724965 Msa0577380:intron 60.0%
!! ACACCGGGTGCTGCTATGTC+CGG - chr4_1:81724952-81724971 None:intergenic 60.0%
GCCTTAGGCTTGTCTGACCC+TGG + chr4_1:81725348-81725367 Msa0577380:intron 60.0%
TGGGTCTTAGGGGCTCACCA+GGG - chr4_1:81725368-81725387 None:intergenic 60.0%
TTGGGTCTTAGGGGCTCACC+AGG - chr4_1:81725369-81725388 None:intergenic 60.0%
TGATATCGGGGGAGGACACG+TGG + chr4_1:81725620-81725639 Msa0577380:CDS 60.0%
GGACATAGCAGCACCCGGTG+TGG + chr4_1:81724951-81724970 Msa0577380:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81721380 81726260 81721380 ID=Msa0577380;Name=Msa0577380
chr4_1 mRNA 81721380 81726260 81721380 ID=Msa0577380-mRNA-1;Parent=Msa0577380;Name=Msa0577380-mRNA-1;_AED=0.18;_eAED=0.18;_QI=167|1|1|1|1|1|10|151|735
chr4_1 exon 81721380 81721531 81721380 ID=Msa0577380-mRNA-1:exon:29412;Parent=Msa0577380-mRNA-1
chr4_1 exon 81721641 81721732 81721641 ID=Msa0577380-mRNA-1:exon:29413;Parent=Msa0577380-mRNA-1
chr4_1 exon 81721824 81721921 81721824 ID=Msa0577380-mRNA-1:exon:29414;Parent=Msa0577380-mRNA-1
chr4_1 exon 81722007 81722162 81722007 ID=Msa0577380-mRNA-1:exon:29415;Parent=Msa0577380-mRNA-1
chr4_1 exon 81722660 81723333 81722660 ID=Msa0577380-mRNA-1:exon:29416;Parent=Msa0577380-mRNA-1
chr4_1 exon 81723406 81723497 81723406 ID=Msa0577380-mRNA-1:exon:29417;Parent=Msa0577380-mRNA-1
chr4_1 exon 81723941 81724183 81723941 ID=Msa0577380-mRNA-1:exon:29418;Parent=Msa0577380-mRNA-1
chr4_1 exon 81724276 81724390 81724276 ID=Msa0577380-mRNA-1:exon:29419;Parent=Msa0577380-mRNA-1
chr4_1 exon 81724949 81725141 81724949 ID=Msa0577380-mRNA-1:exon:29420;Parent=Msa0577380-mRNA-1
chr4_1 exon 81725550 81726260 81725550 ID=Msa0577380-mRNA-1:exon:29421;Parent=Msa0577380-mRNA-1
chr4_1 five_prime_UTR 81721380 81721531 81721380 ID=Msa0577380-mRNA-1:five_prime_utr;Parent=Msa0577380-mRNA-1
chr4_1 five_prime_UTR 81721641 81721655 81721641 ID=Msa0577380-mRNA-1:five_prime_utr;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81721656 81721732 81721656 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81721824 81721921 81721824 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81722007 81722162 81722007 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81722660 81723333 81722660 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81723406 81723497 81723406 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81723941 81724183 81723941 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81724276 81724390 81724276 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81724949 81725141 81724949 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 CDS 81725550 81726109 81725550 ID=Msa0577380-mRNA-1:cds;Parent=Msa0577380-mRNA-1
chr4_1 three_prime_UTR 81726110 81726260 81726110 ID=Msa0577380-mRNA-1:three_prime_utr;Parent=Msa0577380-mRNA-1
Gene Sequence

>Msa0577380

ATGGGAGAAAAGATATATCATAATCCAGAAACTGCTAAAAAGTATCACCACAAAATGTTATCTTCACTCTTAGGAAGCAAAGAAGATGCAAAGAATTCACTTCTTTATAGCTATAAACATGGATTTTCAGGGTTTGCTGCTAGAATGACAAAGTCCCAAGCAGAAGATATAGCAAAGTTTCCAGAGGTAGTTTCTGTCATTCCAAATGGCATTCACAAACTTCACACAACTAGAAGTTGGGACTTCATTGGGGTCCATCATCCCTCCTCAAAAACTGTTTTCACTGAAAGCAACTTAGGTCAAGGAACCATCATAGGCGTCATAGACACAGGCATTTGGCCAGAGTCTGCAAGTTTCAATGATGAAGCAATGGGAAAAATTCCATCCAAGTGGAAAGGAGTTTGTCAAGTTGGAGAAAAATTTAACTCCACAAACTGTAACAAGAAGATCATTGGTGCTAGATGGTTCCTAAAAGGAATAACTGATCACACTAAGAACCTCATCCTTGGAAACAATGACACTACAGAATATCTCTCAGCTAGAGATGCTATTGGCCATGGAACTCACACAGCTTCAACAGCAGCTGGATATTATGTAGAAAATGCAAATTATAGAGGCCTTGCTTCTGGTTTAGCAAGAGGAGGAGCACCTTTAGCTCACTTGGCTATCTACAAAGCTTGCTGGGACGTTCCTGTTGGACACTGTACTGATGCTGATATCCTCAAAGCATTTGACATGGCTATACACGATGGTGTAGATGTCTTAACTGTTTCTCTTGGCATTGGCATCCCTTTGTTTTCGTATGTTGATCAACGCGACACGATAGCAATTGGTTCTTTCCACGCAACTTCCAAAGGTATCACAGTTGTTTCTTCAGCTGGAAATTCTGGTCCTATTTCTCAAACCGTTTCGAATACAGCACCATGGCTCATTACAGTTGCGGCCACTACAATCGATAGGACTTTTCCAACAGCCATTACACTTGGAAATAACCTTACTTTGTGGGGACAGTCCATTGACAATGGAAAACACTCTCTTGGATTTGTCGGGCTCACATACTCCGAGCGCATTGCACGTGATCCATCGGATGATTTAGCTAAGGATTGTCAGTCTGGAAGTCTGAATGAAACAATGGCAGCAGGAAAAATTGTTCTATGCTTTTCAGTATCAGATCAACAAGATATTGTTTCTGCAGCACTTACAGTAAAGGAAGCTGGTGGAGTTGGACTAATATATGCACAGCGTCATGAAGATGGACTCAATGAATGTGGTATACTTCCGTGCATTAAGGTAGATTATGAAGCAGGGACACAACTGTTAACCTATATTAGAAGAGCAAGGTTTCCAACTGCAAGGCTGAGTTTTCCAAAGACTGTTATAGGAAAATGGATATCTCCAAGAGTTGCATCTTTCTCATCTAGAGGACCTAGTACCTTGTCTCCAACTGTGCTAAAGCCGGACATAGCAGCACCCGGTGTGGACATTTTGGCTGCATTTCCACCCAAGGGAAGTAAAAAGAGCAGTGGATTCATATTCTTATCTGGAACATCAATGTCTTGTCCTCATGTGGCAGGAATAGCAGCACTCATAAAATCCAAACACCCAACTTGGTCACCTGCAGCCATAAGATCAGCTTTGGTAACAACAGCCTCTCAAAGCGGAACTGATGGAGGCCTTATATCAGAAGAAGGTTCCACAAATAAGGCAGCAGACCCATTTGATATCGGGGGAGGACACGTGGATCCTAACAAAGCAATCAATGCAGGACTCATATACAACATTACCACAAAGGATTATATCCAATTCCTATGTTCCATGGGTCATAATACAGCATCTATTAGAAAAGTGACCAAAACCACTACAAGTTGCAACAAACAAAAAAGACGAGCACTGTTGAACCTTAACCTTCCTTCCATATCAATTCCAAACCTGAAGAGTCATACAACAGTAATGAGAACAGTGACAAACGTTGGAAACATAAATGTAGTCTACAAAGCTATAGTGAATAGTCCTTATGGTATAAAAGTGAGAGTTGAACCTCAAATTTTGAACTTCAATTCAGAAATCAAAGTACTTACCTTCAACGTAAGCTTCATTTCAACTCAAAAGTTGCATGGTGATTACAGATTTGGAAGCCTAACATGGACAGATGGCAATCATTTTGTGAGGATACCAATAGCTGTTAGGACCATACAATTTGAATATTAA
Protein sequence

>Msa0577380

MGEKIYHNPETAKKYHHKMLSSLLGSKEDAKNSLLYSYKHGFSGFAARMTKSQAEDIAKFPEVVSVIPNGIHKLHTTRSWDFIGVHHPSSKTVFTESNLGQGTIIGVIDTGIWPESASFNDEAMGKIPSKWKGVCQVGEKFNSTNCNKKIIGARWFLKGITDHTKNLILGNNDTTEYLSARDAIGHGTHTASTAAGYYVENANYRGLASGLARGGAPLAHLAIYKACWDVPVGHCTDADILKAFDMAIHDGVDVLTVSLGIGIPLFSYVDQRDTIAIGSFHATSKGITVVSSAGNSGPISQTVSNTAPWLITVAATTIDRTFPTAITLGNNLTLWGQSIDNGKHSLGFVGLTYSERIARDPSDDLAKDCQSGSLNETMAAGKIVLCFSVSDQQDIVSAALTVKEAGGVGLIYAQRHEDGLNECGILPCIKVDYEAGTQLLTYIRRARFPTARLSFPKTVIGKWISPRVASFSSRGPSTLSPTVLKPDIAAPGVDILAAFPPKGSKKSSGFIFLSGTSMSCPHVAGIAALIKSKHPTWSPAAIRSALVTTASQSGTDGGLISEEGSTNKAADPFDIGGGHVDPNKAINAGLIYNITTKDYIQFLCSMGHNTASIRKVTKTTTSCNKQKRRALLNLNLPSISIPNLKSHTTVMRTVTNVGNINVVYKAIVNSPYGIKVRVEPQILNFNSEIKVLTFNVSFISTQKLHGDYRFGSLTWTDGNHFVRIPIAVRTIQFEY*