AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0564020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564020 MtrunA17_Chr8g0377961 82.331 532 31 4 1 469 1 532 0.0 847
Msa0564020 MtrunA17_Chr5g0407701 38.171 503 221 12 40 469 25 510 3.46e-101 319
Msa0564020 MtrunA17_Chr8g0369891 38.632 497 226 12 40 469 31 515 3.51e-101 319
Msa0564020 MtrunA17_Chr7g0262161 43.700 373 185 7 106 469 146 502 9.32e-90 289
Msa0564020 MtrunA17_Chr4g0026641 36.680 488 239 8 44 469 28 507 1.14e-87 283
Msa0564020 MtrunA17_Chr2g0285111 45.288 382 180 11 107 469 165 536 3.05e-86 280
Msa0564020 MtrunA17_Chr4g0037221 44.624 372 188 8 109 469 145 509 4.62e-86 280
Msa0564020 MtrunA17_Chr4g0053781 43.164 373 189 7 106 469 143 501 7.93e-85 276
Msa0564020 MtrunA17_Chr4g0057531 35.742 512 237 13 38 469 28 527 1.75e-84 276
Msa0564020 MtrunA17_Chr2g0285121 43.603 383 186 11 107 469 161 533 5.41e-84 275
Msa0564020 MtrunA17_Chr5g0401511 43.850 374 186 7 106 469 148 507 1.20e-82 270
Msa0564020 MtrunA17_Chr4g0020651 43.316 374 188 7 106 469 144 503 1.38e-82 270
Msa0564020 MtrunA17_Chr4g0057511 42.257 381 186 11 106 469 3 366 9.29e-82 265
Msa0564020 MtrunA17_Chr8g0354741 43.122 378 178 11 106 469 31 385 2.88e-81 264
Msa0564020 MtrunA17_Chr2g0300751 42.359 373 191 7 106 469 162 519 2.89e-81 267
Msa0564020 MtrunA17_Chr3g0120521 42.744 379 187 12 106 469 160 523 3.52e-81 267
Msa0564020 MtrunA17_Chr4g0057461 42.338 385 188 10 106 469 7 378 5.81e-81 263
Msa0564020 MtrunA17_Chr4g0057471 41.161 379 194 10 106 469 95 459 1.14e-80 264
Msa0564020 MtrunA17_Chr1g0152771 43.360 369 188 6 109 469 144 499 1.35e-80 265
Msa0564020 MtrunA17_Chr3g0136151 43.583 374 186 7 106 469 149 507 6.95e-80 263
Msa0564020 MtrunA17_Chr8g0354771 42.857 378 190 11 106 469 147 512 1.47e-78 259
Msa0564020 MtrunA17_Chr7g0246451 35.845 491 228 12 39 469 36 499 4.24e-78 258
Msa0564020 MtrunA17_Chr4g0057491 41.379 377 197 9 106 469 7 372 7.24e-78 254
Msa0564020 MtrunA17_Chr1g0204321 40.426 376 198 7 106 469 163 524 3.25e-77 256
Msa0564020 MtrunA17_Chr5g0423261 41.953 379 192 11 106 469 7 372 1.29e-76 251
Msa0564020 MtrunA17_Chr4g0035881 46.713 289 104 3 181 469 4 242 2.85e-76 241
Msa0564020 MtrunA17_Chr4g0076611 40.318 377 201 11 106 469 85 450 3.27e-76 252
Msa0564020 MtrunA17_Chr4g0057481 40.741 378 196 9 106 469 77 440 8.79e-76 251
Msa0564020 MtrunA17_Chr7g0266051 34.316 475 222 13 58 469 12 459 1.70e-73 245
Msa0564020 MtrunA17_Chr4g0070391 39.716 423 223 8 69 469 86 498 1.04e-72 244
Msa0564020 MtrunA17_Chr8g0351011 35.438 491 232 10 39 469 41 506 1.83e-72 243
Msa0564020 MtrunA17_Chr7g0261691 41.420 338 175 10 106 431 21 347 4.12e-72 231
Msa0564020 MtrunA17_Chr3g0143251 41.645 377 189 8 106 469 153 511 1.70e-71 241
Msa0564020 MtrunA17_Chr6g0470851 33.874 493 227 14 37 469 30 483 2.61e-71 239
Msa0564020 MtrunA17_Chr1g0189561 33.659 511 255 17 23 469 13 503 3.69e-71 240
Msa0564020 MtrunA17_Chr8g0344331 42.297 357 187 8 122 469 173 519 1.68e-70 238
Msa0564020 MtrunA17_Chr4g0057061 41.779 371 180 9 109 469 185 529 5.26e-70 237
Msa0564020 MtrunA17_Chr8g0344971 37.671 438 213 11 56 469 99 500 1.24e-69 236
Msa0564020 MtrunA17_Chr7g0248871 38.919 370 203 10 106 469 157 509 1.47e-69 236
Msa0564020 MtrunA17_Chr7g0227991 33.265 490 235 11 38 469 33 488 7.16e-69 233
Msa0564020 MtrunA17_Chr8g0376841 39.785 372 185 9 109 469 167 510 3.53e-68 228
Msa0564020 MtrunA17_Chr6g0470881 33.333 501 236 14 29 469 21 483 3.97e-68 231
Msa0564020 MtrunA17_Chr8g0334521 32.427 515 249 15 17 469 11 488 9.09e-68 230
Msa0564020 MtrunA17_Chr3g0143241 39.601 351 158 7 106 432 153 473 9.10e-68 226
Msa0564020 MtrunA17_Chr1g0170081 33.266 496 229 12 37 469 30 486 1.52e-67 229
Msa0564020 MtrunA17_Chr7g0248861 39.130 368 204 9 106 469 160 511 4.38e-67 230
Msa0564020 MtrunA17_Chr7g0248861 50.442 226 92 8 106 326 650 860 5.67e-50 182
Msa0564020 MtrunA17_Chr8g0334491 33.467 499 228 15 38 469 29 490 2.03e-66 226
Msa0564020 MtrunA17_Chr3g0079971 32.819 518 236 16 23 470 9 484 8.71e-66 225
Msa0564020 MtrunA17_Chr1g0146251 33.800 500 225 14 37 469 30 490 1.92e-65 224
Msa0564020 MtrunA17_Chr5g0398241 42.246 374 176 10 109 469 163 509 6.04e-65 223
Msa0564020 MtrunA17_Chr7g0250481 31.461 534 241 19 44 469 32 548 4.30e-64 221
Msa0564020 MtrunA17_Chr1g0146271 33.200 500 224 15 38 469 31 488 6.43e-64 220
Msa0564020 MtrunA17_Chr8g0345981 40.800 375 190 12 106 469 150 503 6.82e-64 220
Msa0564020 MtrunA17_Chr5g0398401 41.979 374 177 10 109 469 163 509 8.30e-64 220
Msa0564020 MtrunA17_Chr1g0189251 38.798 366 201 8 106 469 156 500 2.26e-63 219
Msa0564020 MtrunA17_Chr4g0026651 51.364 220 99 4 106 325 92 303 4.63e-63 207
Msa0564020 MtrunA17_Chr8g0345971 39.353 371 195 9 106 469 157 504 2.13e-62 216
Msa0564020 MtrunA17_Chr7g0276151 39.295 369 195 11 106 469 156 500 7.61e-62 214
Msa0564020 MtrunA17_Chr3g0134621 38.753 369 176 8 109 469 150 476 9.82e-62 214
Msa0564020 MtrunA17_Chr5g0398351 41.555 373 179 11 109 469 144 489 1.30e-61 217
Msa0564020 MtrunA17_Chr5g0398351 40.533 375 181 12 109 469 914 1260 6.20e-60 213
Msa0564020 MtrunA17_Chr8g0345991 40.318 377 187 14 106 469 148 499 1.61e-61 214
Msa0564020 MtrunA17_Chr5g0398331 40.691 376 177 12 109 469 162 506 1.87e-61 213
Msa0564020 MtrunA17_Chr7g0250411 36.990 392 205 15 106 469 157 534 2.22e-60 211
Msa0564020 MtrunA17_Chr3g0097061 45.161 279 112 8 106 372 52 301 3.21e-60 203
Msa0564020 MtrunA17_Chr7g0246461 36.856 369 179 10 109 469 162 484 2.13e-59 207
Msa0564020 MtrunA17_Chr5g0398311 41.534 378 167 13 109 469 162 502 3.54e-58 204
Msa0564020 MtrunA17_Chr2g0301911 36.043 369 186 10 113 469 28 358 1.77e-57 194
Msa0564020 MtrunA17_Chr7g0250391 35.323 402 198 14 106 469 156 533 1.15e-56 201
Msa0564020 MtrunA17_Chr7g0250371 35.338 399 203 13 106 469 157 535 4.87e-56 199
Msa0564020 MtrunA17_Chr3g0105461 42.715 302 133 10 43 322 35 318 9.13e-56 189
Msa0564020 MtrunA17_Chr8g0345961 42.617 298 141 9 106 396 146 420 1.71e-55 197
Msa0564020 MtrunA17_Chr7g0250461 38.339 313 164 10 106 401 157 457 4.74e-55 191
Msa0564020 MtrunA17_Chr7g0250331 35.766 411 206 15 106 469 157 556 3.32e-54 194
Msa0564020 MtrunA17_Chr5g0439271 37.535 357 187 9 139 469 8 354 7.48e-52 184
Msa0564020 MtrunA17_Chr6g0480721 41.045 268 129 7 76 331 40 290 2.27e-51 184
Msa0564020 MtrunA17_Chr2g0303881 38.400 375 199 10 106 469 120 473 1.94e-50 182
Msa0564020 MtrunA17_Chr2g0301011 35.467 375 157 13 106 469 52 352 1.28e-49 176
Msa0564020 MtrunA17_Chr8g0346361 48.131 214 81 6 114 325 3 188 1.74e-49 176
Msa0564020 MtrunA17_Chr2g0312841 46.341 205 85 4 115 319 9 188 8.43e-48 163
Msa0564020 MtrunA17_Chr3g0103071 35.743 249 145 5 232 469 1 245 3.93e-39 143
Msa0564020 MtrunA17_Chr2g0298601 31.865 386 216 16 111 461 178 551 1.64e-35 140
Msa0564020 MtrunA17_Chr5g0447171 39.367 221 114 5 264 469 9 224 1.68e-33 132
Msa0564020 MtrunA17_Chr5g0434941 82.432 74 13 0 237 310 1 74 3.66e-33 120
Msa0564020 MtrunA17_Chr5g0436021 44.318 176 80 5 140 315 31 188 1.09e-31 120
Msa0564020 MtrunA17_Chr4g0071871 30.155 388 226 16 108 461 175 551 7.00e-30 123
Msa0564020 MtrunA17_Chr2g0302951 33.922 283 153 9 109 370 193 462 2.78e-29 121
Msa0564020 MtrunA17_Chr4g0075331 31.955 266 158 6 120 370 109 366 5.67e-28 117
Msa0564020 MtrunA17_Chr3g0142981 44.720 161 59 2 170 330 48 178 6.56e-28 110
Msa0564020 MtrunA17_Chr8g0380961 33.208 265 156 6 119 370 214 470 2.23e-27 115
Msa0564020 MtrunA17_Chr2g0301021 30.791 354 166 13 37 370 30 324 6.91e-27 111
Msa0564020 MtrunA17_Chr3g0103061 42.982 114 55 2 106 219 157 260 5.88e-25 103
Msa0564020 MtrunA17_Chr4g0035871 51.667 60 27 1 48 105 1 60 1.19e-12 65.5
Msa0564020 MtrunA17_Chr1g0171421 46.875 64 31 1 43 106 47 107 6.08e-12 62.8
Msa0564020 MtrunA17_Chr3g0143011 50.877 57 28 0 276 332 3 59 7.48e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564020 AT1G32940.3 46.108 501 199 8 37 469 23 520 6.11e-138 410
Msa0564020 AT1G32940.1 46.108 501 199 8 37 469 23 520 4.60e-136 410
Msa0564020 AT1G32960.1 45.110 501 204 10 37 469 26 523 1.42e-131 399
Msa0564020 AT4G10550.1 42.553 517 225 9 23 469 11 525 1.54e-127 389
Msa0564020 AT4G10550.3 42.661 511 221 9 29 469 33 541 1.56e-126 386
Msa0564020 AT4G10530.1 42.330 515 226 12 19 470 1 507 7.21e-126 383
Msa0564020 AT4G10520.1 42.574 505 219 10 24 469 10 502 2.06e-125 382
Msa0564020 AT1G32940.4 45.975 472 184 8 66 469 1 469 1.17e-124 379
Msa0564020 AT1G32940.2 45.975 472 184 8 66 469 1 469 1.17e-124 379
Msa0564020 AT4G10510.3 42.722 529 227 13 10 469 2 523 2.76e-123 377
Msa0564020 AT4G10540.1 42.116 501 219 8 37 469 24 521 7.11e-123 376
Msa0564020 AT4G10510.1 43.522 494 208 10 43 469 22 511 7.76e-123 376
Msa0564020 AT1G32950.1 41.973 517 230 8 20 469 6 519 1.85e-117 362
Msa0564020 AT4G10550.4 42.463 471 202 8 66 469 1 469 5.24e-115 354
Msa0564020 AT4G10550.2 42.463 471 202 8 66 469 1 469 5.24e-115 354
Msa0564020 AT1G66220.1 40.891 516 230 12 17 469 6 509 3.05e-114 353
Msa0564020 AT5G11940.1 38.583 508 243 6 19 469 13 508 1.09e-108 339
Msa0564020 AT1G32950.2 42.675 471 200 8 66 469 1 468 7.37e-106 331
Msa0564020 AT4G10510.2 47.200 375 183 7 106 469 82 452 3.90e-105 328
Msa0564020 AT4G10510.4 47.200 375 183 7 106 469 97 467 5.16e-105 328
Msa0564020 AT4G21650.1 40.434 507 202 9 38 469 36 517 1.31e-104 328
Msa0564020 AT1G32970.1 39.676 494 241 11 19 469 1 480 4.73e-104 326
Msa0564020 AT1G66210.1 40.081 494 220 12 37 469 34 512 2.27e-101 320
Msa0564020 AT4G21630.1 45.924 368 172 8 106 469 166 510 1.05e-92 297
Msa0564020 AT4G21630.1 42.735 117 58 3 9 121 2 113 4.18e-18 87.8
Msa0564020 AT4G21323.1 45.504 367 182 9 105 469 200 550 4.83e-92 296
Msa0564020 AT4G21323.1 43.750 64 36 0 43 106 80 143 1.60e-11 67.4
Msa0564020 AT1G04110.1 42.819 376 189 10 106 469 152 513 1.60e-85 279
Msa0564020 AT4G34980.1 38.877 463 239 11 36 469 52 499 1.90e-84 276
Msa0564020 AT1G20160.3 42.819 376 185 10 106 469 151 508 3.22e-84 270
Msa0564020 AT4G21640.1 43.243 370 149 9 106 469 170 484 8.35e-84 273
Msa0564020 AT4G21640.1 43.220 118 58 3 8 121 3 115 1.95e-18 89.0
Msa0564020 AT1G20160.2 42.553 376 186 10 106 469 112 469 6.27e-83 271
Msa0564020 AT1G20160.1 42.553 376 186 10 106 469 151 508 2.28e-82 270
Msa0564020 AT3G14067.1 36.714 493 234 12 39 469 31 507 2.17e-80 265
Msa0564020 AT5G67360.1 43.011 372 191 7 106 469 145 503 4.23e-80 264
Msa0564020 AT2G05920.1 43.817 372 187 8 106 469 140 497 7.81e-80 263
Msa0564020 AT5G03620.2 35.031 491 233 11 44 469 35 504 1.20e-79 258
Msa0564020 AT4G21326.1 40.274 365 201 5 106 469 97 445 8.55e-79 259
Msa0564020 AT5G03620.1 35.031 491 233 11 44 469 35 504 8.32e-78 258
Msa0564020 AT4G26330.2 43.396 371 197 11 106 469 103 467 1.20e-77 257
Msa0564020 AT4G26330.1 43.396 371 197 11 106 469 117 481 1.79e-77 256
Msa0564020 AT3G14240.1 37.875 433 232 11 56 469 96 510 9.59e-76 253
Msa0564020 AT1G20150.1 39.844 384 187 11 106 469 153 512 1.31e-75 252
Msa0564020 AT2G04160.1 40.369 379 196 9 106 469 159 522 1.42e-75 252
Msa0564020 AT5G45650.2 40.157 381 204 9 106 469 166 539 1.79e-75 252
Msa0564020 AT5G45650.1 40.157 381 204 9 106 469 166 539 1.79e-75 252
Msa0564020 AT1G01900.1 42.318 371 186 9 109 469 161 513 1.17e-74 249
Msa0564020 AT5G51750.1 40.000 375 201 7 106 469 160 521 1.85e-74 249
Msa0564020 AT5G59810.1 38.992 377 200 9 106 469 169 528 8.69e-72 242
Msa0564020 AT5G59130.1 31.507 511 237 15 23 469 17 478 5.10e-68 231
Msa0564020 AT5G59090.3 33.065 496 226 12 38 469 27 480 6.92e-66 225
Msa0564020 AT4G00230.2 34.146 492 238 10 38 469 32 497 1.23e-65 222
Msa0564020 AT4G00230.1 34.146 492 238 10 38 469 32 497 1.76e-64 222
Msa0564020 AT5G59190.1 33.542 480 217 14 51 469 6 444 7.54e-64 219
Msa0564020 AT5G59130.3 35.450 378 184 12 106 469 112 443 1.87e-62 215
Msa0564020 AT5G59130.4 35.450 378 184 12 106 469 151 482 2.51e-62 216
Msa0564020 AT5G45640.1 38.764 356 189 11 106 444 136 479 1.34e-61 214
Msa0564020 AT4G15040.2 34.161 483 203 17 51 468 7 439 1.59e-61 213
Msa0564020 AT4G15040.1 34.161 483 203 17 51 468 7 439 1.59e-61 213
Msa0564020 AT5G59090.2 37.234 376 183 10 106 469 148 482 1.76e-61 213
Msa0564020 AT5G59090.1 37.234 376 183 10 106 469 148 482 2.02e-61 213
Msa0564020 AT3G46850.1 38.400 375 187 12 106 469 149 490 1.47e-60 211
Msa0564020 AT5G58830.1 38.630 365 169 11 106 469 149 459 3.18e-60 209
Msa0564020 AT5G59100.1 32.317 492 232 15 43 469 34 489 3.56e-60 210
Msa0564020 AT5G59120.1 37.366 372 188 11 106 469 147 481 9.38e-60 209
Msa0564020 AT5G58840.2 37.260 365 175 13 106 470 151 461 4.41e-59 202
Msa0564020 AT5G59130.2 35.092 379 174 12 106 469 151 472 1.23e-58 206
Msa0564020 AT3G46840.1 36.842 380 185 11 106 469 150 490 3.01e-58 204
Msa0564020 AT5G58840.3 37.088 364 175 13 106 469 151 460 7.12e-58 200
Msa0564020 AT5G67090.1 37.401 377 196 11 107 469 140 490 1.04e-57 203
Msa0564020 AT5G58840.1 37.088 364 175 13 106 469 151 460 7.85e-57 200
Msa0564020 AT5G58820.1 33.196 485 209 16 43 469 29 456 2.54e-56 199
Msa0564020 AT5G44530.3 35.461 282 150 9 109 370 189 458 2.22e-38 148
Msa0564020 AT5G44530.1 35.461 282 150 9 109 370 189 458 7.29e-38 147
Msa0564020 AT5G44530.2 35.461 282 150 9 109 370 189 458 7.52e-38 147
Msa0564020 AT1G30600.1 32.741 394 208 15 109 460 181 559 1.65e-37 146
Msa0564020 AT4G20430.3 34.686 271 147 9 118 370 215 473 2.83e-35 140
Msa0564020 AT4G20430.1 34.686 271 147 9 118 370 215 473 2.83e-35 140
Msa0564020 AT4G20430.2 33.692 279 158 7 118 387 215 475 6.83e-34 135
Msa0564020 AT2G39850.1 29.968 317 142 8 63 319 47 343 2.71e-32 131
Msa0564020 AT2G19170.1 29.771 393 223 15 108 462 171 548 1.98e-31 128
Msa0564020 AT2G19170.2 29.771 393 223 15 108 462 171 548 1.98e-31 128
Msa0564020 AT4G30020.3 30.709 381 219 13 116 462 180 549 7.97e-31 126
Msa0564020 AT4G30020.1 30.709 381 219 13 116 462 180 549 7.97e-31 126
Msa0564020 AT4G30020.4 30.709 381 219 13 116 462 180 549 7.97e-31 126
Msa0564020 AT4G30020.2 30.709 381 219 13 116 462 180 549 7.97e-31 126
Msa0564020 AT1G62340.1 30.649 385 215 15 122 466 202 574 1.68e-28 119

Find 180 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTTCAGCTGGAAATTC+TGG 0.217907 4_1:+64500022 Msa0564020:CDS
CAAAGACTGTTATAGGAAAA+TGG 0.220891 4_1:+64501125 Msa0564020:CDS
CATCATAACCTGCACTCTTC+TGG 0.222371 4_1:+64501730 Msa0564020:three_prime_UTR
TATTTGCTTCTTCTGATATA+AGG 0.266034 4_1:-64502484 None:intergenic
AGCACCCGGTGTGGACATTT+TGG 0.276373 4_1:+64501783 Msa0564020:three_prime_UTR
TTCGAAACGGTTTGAGAAAT+AGG 0.281095 4_1:-64500046 None:intergenic
TCACCTTGCTCTTCTAATAT+AGG 0.283071 4_1:-64500988 None:intergenic
CTTCAGGTTTGGAATTGATA+TGG 0.287368 4_1:-64502717 None:intergenic
AATTATAGAGGCCTTGCTTC+TGG 0.298733 4_1:+64499761 Msa0564020:CDS
TGAATATTAAACCGATGTTT+TGG 0.302345 4_1:+64503003 Msa0564020:three_prime_UTR
AAAATGTTATCTTCACTCTT+AGG 0.305045 4_1:+64498543 Msa0564020:CDS
TTGCATGGTGATTACAGATT+TGG 0.307057 4_1:+64502914 Msa0564020:three_prime_UTR
TATATCAGAAGAAGCAAATA+AGG 0.308053 4_1:+64502487 Msa0564020:three_prime_UTR
GGCAGCAGACCCATTTGATA+TGG 0.318977 4_1:+64502508 Msa0564020:three_prime_UTR
GATCTTCTTGTTACAGTTTG+TGG 0.325361 4_1:-64499582 None:intergenic
ACCTTAAAATTCTTACTTGT+AGG 0.328245 4_1:+64501224 Msa0564020:three_prime_UTR
GTTGCAACTTGTAGTGGTTT+TGG 0.331823 4_1:-64502654 None:intergenic
AGTGGATTCATATTCTTATC+TGG 0.334970 4_1:+64501838 Msa0564020:three_prime_UTR
TCCTGCATTGATTGCTTTGT+TGG 0.336541 4_1:-64502549 None:intergenic
TGCCATATCTGTAGTATTGT+AGG 0.339455 4_1:+64501467 Msa0564020:three_prime_UTR
TTACTGTTGTATGACTCTTC+AGG 0.345235 4_1:-64502733 None:intergenic
GCTATAGTGAATAGTCCTTA+TGG 0.348636 4_1:+64502800 Msa0564020:three_prime_UTR
ATCACAGTTGTTTCTTCAGC+TGG 0.356297 4_1:+64500013 Msa0564020:CDS
TGTTACCAAAGCTGATCTTA+TGG 0.357629 4_1:-64501938 None:intergenic
GATTGCCATCTGTCCATGTT+AGG 0.364733 4_1:-64502940 None:intergenic
GGTGCTAGATGGTTCCTAAA+AGG 0.369584 4_1:+64499608 Msa0564020:CDS
GTTGTATGACTCTTCAGGTT+TGG 0.378921 4_1:-64502728 None:intergenic
TACTTGCTATATCTTCTGCT+TGG 0.382876 4_1:-64498728 None:intergenic
TGGAAATAACCTTACTTTGT+GGG 0.383187 4_1:+64500138 Msa0564020:CDS
TGGTATACTTCCGTGCATTA+AGG 0.383715 4_1:+64500935 Msa0564020:CDS
TAGATGATGGAAACTAATTC+AGG 0.386421 4_1:+64498239 Msa0564020:exon
CCTGCATTGATTGCTTTGTT+GGG 0.386773 4_1:-64502548 None:intergenic
GACCCATGGAACATAGGAAT+TGG 0.390726 4_1:-64502604 None:intergenic
AAAAGTAAATAGAGAATTGT+TGG 0.392588 4_1:+64501294 Msa0564020:three_prime_UTR
GGCTATACCTTTAGCACAGT+TGG 0.393179 4_1:-64501199 None:intergenic
TGAAATGAAGCTTACGTTGA+AGG 0.396560 4_1:-64502882 None:intergenic
TGGCTATCTACAAAGCTTGC+TGG 0.398566 4_1:+64499816 Msa0564020:CDS
GGTTTAATATTCAAATTGTA+TGG 0.400861 4_1:-64502993 None:intergenic
CAAACTCCTTTCCACTTGGA+TGG 0.402536 4_1:-64499536 None:intergenic
ATCCTACAATACTACAGATA+TGG 0.403560 4_1:-64501469 None:intergenic
GATGTCTTAACTGTTTCTCT+TGG 0.405379 4_1:+64499911 Msa0564020:CDS
ATCATAACCTGCACTCTTCT+GGG 0.407128 4_1:+64501731 Msa0564020:three_prime_UTR
TGAGGATACCAATAGCTGTT+AGG 0.408815 4_1:+64502969 Msa0564020:three_prime_UTR
TTAACTGTTTCTCTTGGCAT+TGG 0.414235 4_1:+64499917 Msa0564020:CDS
ACTTGCTATATCTTCTGCTT+GGG 0.417096 4_1:-64498727 None:intergenic
TGAAGTAAGGATTGTCAGTC+TGG 0.419249 4_1:+64500759 Msa0564020:intron
GATTCTTCTGCAAATATCTC+GGG 0.427428 4_1:-64498338 None:intergenic
TTGGAAATAACCTTACTTTG+TGG 0.427732 4_1:+64500137 Msa0564020:CDS
GAATTGAAGTTCAAAATTTG+AGG 0.429380 4_1:-64502842 None:intergenic
TGTATGGTCCTAACAGCTAT+TGG 0.434313 4_1:-64502977 None:intergenic
TTTCCAAGTGTAATGGCTGT+TGG 0.435517 4_1:-64500121 None:intergenic
ACTAAATAAATGTCTATTTG+AGG 0.435647 4_1:+64501627 Msa0564020:three_prime_UTR
AGAAACAACTGTGATACCTT+TGG 0.439366 4_1:-64500005 None:intergenic
AGGTGACCAAGTTGGGTGTT+TGG 0.442891 4_1:-64501911 None:intergenic
GTTATATATTGCTTCTCTGC+TGG 0.448106 4_1:-64501575 None:intergenic
TATCCAATTCCTATGTTCCA+TGG 0.450910 4_1:+64502601 Msa0564020:three_prime_UTR
CTTGTCTCCAACTGTGCTAA+AGG 0.451379 4_1:+64501192 Msa0564020:CDS
AGAAGATCATTGGTGCTAGA+TGG 0.451764 4_1:+64499597 Msa0564020:CDS
GAGTGTGTTTCCATTGTCAA+TGG 0.452294 4_1:-64500239 None:intergenic
GATGAGAAAGATGCAACTCT+TGG 0.452575 4_1:-64501154 None:intergenic
TGCAGCCATAAGATCAGCTT+TGG 0.453854 4_1:+64501933 Msa0564020:three_prime_UTR
AGATCAGCTTTGGTAACAAC+AGG 0.460348 4_1:+64501943 Msa0564020:three_prime_UTR
CAAATTTCAGAAACATGATC+TGG 0.462072 4_1:-64501266 None:intergenic
CTGTAGTGTCATTGTTTCCA+AGG 0.462626 4_1:-64499658 None:intergenic
GCATCAGTACAGTGTCCAAC+AGG 0.464038 4_1:-64499845 None:intergenic
AAGGTTATTTCCAAGTGTAA+TGG 0.464304 4_1:-64500128 None:intergenic
ATTAAGGTAGATTATGAAGC+AGG 0.465394 4_1:+64500951 Msa0564020:CDS
TGACAATGGAAACACACTCT+TGG 0.465520 4_1:+64500243 Msa0564020:CDS
TTGATATGGAAGGAAGGTTA+AGG 0.465571 4_1:-64502703 None:intergenic
AACTGTAACAAGAAGATCAT+TGG 0.465970 4_1:+64499587 Msa0564020:CDS
CAACGCGACACGATAGCAAT+TGG 0.470243 4_1:+64499965 Msa0564020:CDS
GTAAAGGAAGCTGGTGGAGT+TGG 0.470952 4_1:+64500870 Msa0564020:CDS
GCCTCTCAAAGCGGAACTGA+TGG 0.471189 4_1:+64502458 Msa0564020:intron
CTAGGTGCATATTGTATACA+TGG 0.473758 4_1:+64498473 Msa0564020:intron
GCAGCAGACCCATTTGATAT+GGG 0.473937 4_1:+64502509 Msa0564020:three_prime_UTR
TGGCTGCAGGTGACCAAGTT+GGG 0.475861 4_1:-64501918 None:intergenic
TGTAGCATACCCACAAAGTA+AGG 0.480458 4_1:-64500147 None:intergenic
TGATTCTTCTGCAAATATCT+CGG 0.481072 4_1:-64498339 None:intergenic
CACACTAAGAACCTCATCCT+TGG 0.483752 4_1:+64499641 Msa0564020:CDS
TGGAAAGGAGTTTGTCAAGT+TGG 0.485654 4_1:+64499545 Msa0564020:CDS
GTAGAAAATGCAAATTATAG+AGG 0.487178 4_1:+64499749 Msa0564020:CDS
CTCTCAGCTAGAGATGCTAT+TGG 0.487608 4_1:+64499686 Msa0564020:CDS
TGTCATTGTTTCCAAGGATG+AGG 0.488136 4_1:-64499652 None:intergenic
AAACACACTCTTGGATTTGT+CGG 0.488571 4_1:+64500252 Msa0564020:CDS
TATGCACAGCGTCATGAAGA+TGG 0.492726 4_1:+64500900 Msa0564020:CDS
TTGACAAACTCCTTTCCACT+TGG 0.494530 4_1:-64499540 None:intergenic
AAACAAGAGATGTGCTAGAA+AGG 0.497886 4_1:+64498262 Msa0564020:CDS
CACACAGCTTCAACAGCAGC+TGG 0.497918 4_1:+64499719 Msa0564020:CDS
TTCTGCAGCACTTACAGTAA+AGG 0.500122 4_1:+64500854 Msa0564020:CDS
GAGAAATTCGATTTGAGTGA+AGG 0.501642 4_1:+64501598 Msa0564020:three_prime_UTR
TAAAATCCAAACACCCAACT+TGG 0.501966 4_1:+64501905 Msa0564020:three_prime_UTR
TAGCCATGTCAAATGCTTTG+AGG 0.503512 4_1:-64499874 None:intergenic
ACACCGGGTGCTGCTATGTC+CGG 0.508908 4_1:-64501772 None:intergenic
TTTAGAAAGAAAAGCACAAT+CGG 0.510868 4_1:+64501326 Msa0564020:three_prime_UTR
GGCTATCTACAAAGCTTGCT+GGG 0.512176 4_1:+64499817 Msa0564020:CDS
AAAGCTGATCTTATGGCTGC+AGG 0.512788 4_1:-64501931 None:intergenic
AGGAGCACCTTTAGCTCACT+TGG 0.515626 4_1:+64499796 Msa0564020:CDS
GATCAACATACGAAAACAAA+GGG 0.515737 4_1:-64499943 None:intergenic
ATGTCTTGTCCTCATGTGGC+AGG 0.515904 4_1:+64501868 Msa0564020:three_prime_UTR
TAAATAGAGAATTGTTGGCT+AGG 0.518532 4_1:+64501299 Msa0564020:three_prime_UTR
TTTCCAACAGCCATTACACT+TGG 0.522045 4_1:+64500118 Msa0564020:CDS
ATCCAATTCCTATGTTCCAT+GGG 0.525074 4_1:+64502602 Msa0564020:three_prime_UTR
CCATGGTGCTGTATTCGAAA+CGG 0.533211 4_1:-64500059 None:intergenic
AGTTTCAATGATGAAGCAAT+GGG 0.533726 4_1:+64499506 Msa0564020:CDS
TAGATAGCCAAGTGAGCTAA+AGG 0.534407 4_1:-64499803 None:intergenic
ATTTCAACTCAAAAGTTGCA+TGG 0.536725 4_1:+64502899 Msa0564020:three_prime_UTR
CTGAATGAAACAATGGCAGC+AGG 0.538323 4_1:+64500786 Msa0564020:CDS
GCTTGCTGGGACGTTCCTGT+TGG 0.538433 4_1:+64499830 Msa0564020:CDS
CTTCTTTATAGCTATAAACA+TGG 0.540098 4_1:+64498672 Msa0564020:CDS
ATTAGAATCATATAAGATTG+TGG 0.540548 4_1:+64503115 Msa0564020:three_prime_UTR
GCTAGAGATGCTATTGGCCA+TGG 0.541370 4_1:+64499692 Msa0564020:CDS
CGGTAGTTAAGTATTCTTTG+AGG 0.541415 4_1:+64503085 Msa0564020:three_prime_UTR
GGAAAACTCAGCCTTGCAGT+TGG 0.542209 4_1:-64501103 None:intergenic
TATTATGACCCATGGAACAT+AGG 0.542775 4_1:-64502610 None:intergenic
TTGTGTGTTGCAACTTGTAG+TGG 0.543136 4_1:-64502660 None:intergenic
GAAAGAAAAGCACAATCGGC+CGG 0.543470 4_1:+64501330 Msa0564020:three_prime_UTR
CTTTAGCACAGTTGGAGACA+AGG 0.546000 4_1:-64501191 None:intergenic
TTGGAATTGATATGGAAGGA+AGG 0.546129 4_1:-64502709 None:intergenic
TCCATCAGTTCCGCTTTGAG+AGG 0.546581 4_1:-64502459 None:intergenic
TGGATCACGTGCAATGCGCT+CGG 0.546600 4_1:-64500288 None:intergenic
CTTGCTTCTGGTTTAGCAAG+AGG 0.547357 4_1:+64499773 Msa0564020:CDS
ATTTGGATTAAGTCTAACTC+AGG 0.549093 4_1:+64501429 Msa0564020:three_prime_UTR
TCTTTCCACGCAACTTCCAA+AGG 0.554837 4_1:+64499989 Msa0564020:CDS
CAATTGTTTAAACTAATAGC+CGG 0.555060 4_1:-64501349 None:intergenic
ATGGCTGCAGGTGACCAAGT+TGG 0.555589 4_1:-64501919 None:intergenic
CCCAACAAAGCAATCAATGC+AGG 0.555745 4_1:+64502548 Msa0564020:three_prime_UTR
TTTGGCTGCATTTCCACCCA+AGG 0.561186 4_1:+64501801 Msa0564020:three_prime_UTR
AAGTTTCAATGATGAAGCAA+TGG 0.562500 4_1:+64499505 Msa0564020:CDS
GCACTTACAGTAAAGGAAGC+TGG 0.562837 4_1:+64500861 Msa0564020:CDS
TGTTATCTTCACTCTTAGGA+AGG 0.567791 4_1:+64498547 Msa0564020:CDS
AGGTTTGGAATTGATATGGA+AGG 0.568145 4_1:-64502713 None:intergenic
TTGAAGCTGTGTGAGTTCCA+TGG 0.569128 4_1:-64499709 None:intergenic
GCTGTCTACTGATTAGATGA+TGG 0.570869 4_1:+64498226 Msa0564020:exon
GCTTCTGGTTTAGCAAGAGG+AGG 0.571874 4_1:+64499776 Msa0564020:CDS
AGTCATTCCCAGAAGAGTGC+AGG 0.576947 4_1:-64501738 None:intergenic
TGGATTAAGTCTAACTCAGG+TGG 0.577147 4_1:+64501432 Msa0564020:three_prime_UTR
ACAGTTGGAGACAAGGTACT+AGG 0.581400 4_1:-64501184 None:intergenic
GTTGCATCTTTCTCATCTAG+AGG 0.585537 4_1:+64501160 Msa0564020:CDS
ACTCTTCTGGGAATGACTGA+TGG 0.591993 4_1:+64501743 Msa0564020:three_prime_UTR
TCTCAAAGCGGAACTGATGG+AGG 0.593016 4_1:+64502461 Msa0564020:three_prime_UTR
CAGCAGACCCATTTGATATG+GGG 0.593851 4_1:+64502510 Msa0564020:three_prime_UTR
AGCAGACCCATTTGATATGG+GGG 0.596154 4_1:+64502511 Msa0564020:three_prime_UTR
CAAACTAATTGCCAAAACAT+CGG 0.597237 4_1:-64503014 None:intergenic
CACACTCTTGGATTTGTCGG+CGG 0.597881 4_1:+64500255 Msa0564020:CDS
GAATGACTGATGGAAATAGC+CGG 0.598458 4_1:+64501753 Msa0564020:three_prime_UTR
ATCAATGTCTTGTCCTCATG+TGG 0.603786 4_1:+64501864 Msa0564020:three_prime_UTR
AAAATTCCATCCAAGTGGAA+AGG 0.604125 4_1:+64499530 Msa0564020:CDS
TGCAGCCAAAATGTCCACAC+CGG 0.604840 4_1:-64501788 None:intergenic
ACCATGGCTCATTACAGTTG+CGG 0.605785 4_1:+64500075 Msa0564020:CDS
GGAAGCCTAACATGGACAGA+TGG 0.610473 4_1:+64502935 Msa0564020:three_prime_UTR
ACAGATTTGGAAGCCTAACA+TGG 0.611247 4_1:+64502927 Msa0564020:three_prime_UTR
TTGGCTGCATTTCCACCCAA+GGG 0.612405 4_1:+64501802 Msa0564020:three_prime_UTR
GGATGCTGTATTATGACCCA+TGG 0.612448 4_1:-64502618 None:intergenic
CAGGGACAGTCCATTGACAA+TGG 0.614731 4_1:+64500229 Msa0564020:intron
GTGGAAGGTTTCCAACTGCA+AGG 0.614861 4_1:+64501092 Msa0564020:intron
TGATCAACATACGAAAACAA+AGG 0.622316 4_1:-64499944 None:intergenic
CTCTTGCTAAACCAGAAGCA+AGG 0.626020 4_1:-64499772 None:intergenic
ATTCTTCTGCAAATATCTCG+GGG 0.626292 4_1:-64498337 None:intergenic
TAACCTATATTAGAAGAGCA+AGG 0.627264 4_1:+64500985 Msa0564020:CDS
TTAAGGTAGATTATGAAGCA+GGG 0.632035 4_1:+64500952 Msa0564020:CDS
TTGCGGCCACTACAATCGAT+AGG 0.633312 4_1:+64500092 Msa0564020:CDS
TCATAATCTACCTTAATGCA+CGG 0.633313 4_1:-64500945 None:intergenic
TAGCCGGACATAGCAGCACC+CGG 0.633717 4_1:+64501769 Msa0564020:three_prime_UTR
ATGAGAACAGTGACAAACGT+TGG 0.635977 4_1:+64502755 Msa0564020:three_prime_UTR
GCAGCCAAAATGTCCACACC+GGG 0.637864 4_1:-64501787 None:intergenic
GCTGCTATTCCTGCCACATG+AGG 0.638035 4_1:-64501877 None:intergenic
GGACATAGCAGCACCCGGTG+TGG 0.639225 4_1:+64501774 Msa0564020:three_prime_UTR
TGGAAGTCTGAATGAAACAA+TGG 0.642638 4_1:+64500779 Msa0564020:CDS
TGATACCTTTGGAAGTTGCG+TGG 0.649399 4_1:-64499994 None:intergenic
AAAAGTCCTATCGATTGTAG+TGG 0.654640 4_1:-64500098 None:intergenic
TAGGTGCATATTGTATACAT+GGG 0.667259 4_1:+64498474 Msa0564020:intron
GCCGCAACTGTAATGAGCCA+TGG 0.676151 4_1:-64500076 None:intergenic
TATCCTCAAAGCATTTGACA+TGG 0.678885 4_1:+64499871 Msa0564020:CDS
AAAAGTGCAGCCTCTCAAAG+CGG 0.681198 4_1:+64502449 Msa0564020:intron
CTTACAGTAAAGGAAGCTGG+TGG 0.703562 4_1:+64500864 Msa0564020:CDS
GAAGATGGACTCAATGAATG+TGG 0.703870 4_1:+64500915 Msa0564020:CDS
GAATTGGATATAATCCTCTG+TGG 0.708669 4_1:-64502588 None:intergenic
CATATACAACATTACCACAG+AGG 0.731399 4_1:+64502574 Msa0564020:three_prime_UTR
TTTGACATGGCTATACACGA+TGG 0.741019 4_1:+64499884 Msa0564020:CDS
CCGTTTCGAATACAGCACCA+TGG 0.744343 4_1:+64500059 Msa0564020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATGTAATGATAATTATT+AGG - chr4_1:64498605-64498624 None:intergenic 10.0%
!! AAAAAATATTATTATGTCAA+CGG - chr4_1:64500502-64500521 None:intergenic 10.0%
!!! GAGATTTTATATATATATTT+AGG - chr4_1:64500700-64500719 None:intergenic 10.0%
!!! TTTTTTATAAAGAAAAGTTT+AGG - chr4_1:64502362-64502381 None:intergenic 10.0%
!!! TGAATTAATCAAATAATTTT+CGG + chr4_1:64503065-64503084 Msa0564020:three_prime_UTR 10.0%
!! TTAAAAACTAATCTTAATCA+TGG - chr4_1:64498769-64498788 None:intergenic 15.0%
!!! TTTAAAAAAGTGCTAAAAAT+AGG - chr4_1:64498793-64498812 None:intergenic 15.0%
!!! AATATTTTTTGTTGAAAACT+CGG + chr4_1:64500512-64500531 Msa0564020:intron 15.0%
!! TAACAAAAAATCTTAGAATT+TGG + chr4_1:64501412-64501431 Msa0564020:three_prime_UTR 15.0%
!!! GTTCTTTTATTTAATTTTGT+TGG - chr4_1:64501496-64501515 None:intergenic 15.0%
!!! AGCATTATATTTTTGTTTTA+TGG - chr4_1:64501684-64501703 None:intergenic 15.0%
!! ATTGAAATTTGAAGATAATT+TGG - chr4_1:64502011-64502030 None:intergenic 15.0%
!! TTAATATTATTAAGCTCATG+TGG + chr4_1:64501073-64501092 Msa0564020:intron 20.0%
!! AAAAGTAAATAGAGAATTGT+TGG + chr4_1:64501294-64501313 Msa0564020:three_prime_UTR 20.0%
!!! CTAAGATTTTTTGTTATGTT+TGG - chr4_1:64501408-64501427 None:intergenic 20.0%
!!! ATGATATCAATATGTTTTCA+AGG + chr4_1:64501546-64501565 Msa0564020:three_prime_UTR 20.0%
!! ACTAAATAAATGTCTATTTG+AGG + chr4_1:64501627-64501646 Msa0564020:three_prime_UTR 20.0%
!! AAAAATATAATGCTCTTACA+TGG + chr4_1:64501690-64501709 Msa0564020:three_prime_UTR 20.0%
!! AAATTTGAAGATAATTTGGA+TGG - chr4_1:64502007-64502026 None:intergenic 20.0%
!!! GTGAAGTTATTATTTTACTT+TGG - chr4_1:64502104-64502123 None:intergenic 20.0%
!!! AGTTAGTTTGATGATATTAT+TGG - chr4_1:64502410-64502429 None:intergenic 20.0%
!! GGTTTAATATTCAAATTGTA+TGG - chr4_1:64502996-64503015 None:intergenic 20.0%
!! ATTAGAATCATATAAGATTG+TGG + chr4_1:64503115-64503134 Msa0564020:three_prime_UTR 20.0%
! CAATTACTACAAACTAAAGT+TGG - chr4_1:64498377-64498396 None:intergenic 25.0%
! TTTATTAAATGCATGTTCCT+AGG + chr4_1:64498455-64498474 Msa0564020:intron 25.0%
! AAAATGTTATCTTCACTCTT+AGG + chr4_1:64498543-64498562 Msa0564020:CDS 25.0%
! CTTCTTTATAGCTATAAACA+TGG + chr4_1:64498672-64498691 Msa0564020:CDS 25.0%
! AGATATAGCAAGTATGAATA+TGG + chr4_1:64498737-64498756 Msa0564020:intron 25.0%
! AACTAATCTTAATCATGGTA+AGG - chr4_1:64498764-64498783 None:intergenic 25.0%
!! GTTTTCATTTTCAAATGCTT+TGG - chr4_1:64499018-64499037 None:intergenic 25.0%
!!! CATTTTCATTTTCTAGTGTT+TGG - chr4_1:64499208-64499227 None:intergenic 25.0%
! CAAACACTAGAAAATGAAAA+TGG + chr4_1:64499206-64499225 Msa0564020:intron 25.0%
!! AAAATGGATTTCTTGCAATA+CGG + chr4_1:64499222-64499241 Msa0564020:intron 25.0%
! CAAGAAATCAAGTTTATCAT+TGG - chr4_1:64499463-64499482 None:intergenic 25.0%
! TGATAAACTTGATTTCTTGA+AGG + chr4_1:64499464-64499483 Msa0564020:intron 25.0%
! GTAGAAAATGCAAATTATAG+AGG + chr4_1:64499749-64499768 Msa0564020:CDS 25.0%
! TCTAGAGAAGAATTCAAATA+GGG - chr4_1:64500408-64500427 None:intergenic 25.0%
!! TTCTAGAGAAGAATTCAAAT+AGG - chr4_1:64500409-64500428 None:intergenic 25.0%
! GTGGTATATACAATATTCAA+CGG + chr4_1:64500588-64500607 Msa0564020:intron 25.0%
!! ATTTTACTCTTGGAATAAGT+AGG + chr4_1:64500668-64500687 Msa0564020:intron 25.0%
!!! CAAGTAAGAATTTTAAGGTT+GGG - chr4_1:64501223-64501242 None:intergenic 25.0%
!!! ACAAGTAAGAATTTTAAGGT+TGG - chr4_1:64501224-64501243 None:intergenic 25.0%
! ACCTTAAAATTCTTACTTGT+AGG + chr4_1:64501224-64501243 Msa0564020:three_prime_UTR 25.0%
!! ACCTACAAGTAAGAATTTTA+AGG - chr4_1:64501228-64501247 None:intergenic 25.0%
!! TTTAGAAAGAAAAGCACAAT+CGG + chr4_1:64501326-64501345 Msa0564020:three_prime_UTR 25.0%
! CAATTGTTTAAACTAATAGC+CGG - chr4_1:64501352-64501371 None:intergenic 25.0%
!!! TTTTTGTTATGTTTGGTTGA+AGG - chr4_1:64501401-64501420 None:intergenic 25.0%
!! CTTACATGGTTTTCAATTTA+TGG + chr4_1:64501704-64501723 Msa0564020:three_prime_UTR 25.0%
!! ACAGAAAGTAATTTTTGTGT+TGG + chr4_1:64502044-64502063 Msa0564020:intron 25.0%
!! TGTTGTTGTTGTAAAAGTTT+AGG - chr4_1:64502297-64502316 None:intergenic 25.0%
! TATTTGCTTCTTCTGATATA+AGG - chr4_1:64502487-64502506 None:intergenic 25.0%
! TATATCAGAAGAAGCAAATA+AGG + chr4_1:64502487-64502506 Msa0564020:three_prime_UTR 25.0%
! GAATTGAAGTTCAAAATTTG+AGG - chr4_1:64502845-64502864 None:intergenic 25.0%
!! TGAATATTAAACCGATGTTT+TGG + chr4_1:64503003-64503022 Msa0564020:three_prime_UTR 25.0%
!! TAGATGATGGAAACTAATTC+AGG + chr4_1:64498239-64498258 Msa0564020:exon 30.0%
TGATTCTTCTGCAAATATCT+CGG - chr4_1:64498342-64498361 None:intergenic 30.0%
TAGGTGCATATTGTATACAT+GGG + chr4_1:64498474-64498493 Msa0564020:intron 30.0%
!! TGATACTTTTTAGCAGTTTC+TGG - chr4_1:64498519-64498538 None:intergenic 30.0%
! AGAGTGAAGATAACATTTTG+TGG - chr4_1:64498542-64498561 None:intergenic 30.0%
! AGCTATAAACATGGATTTTC+AGG + chr4_1:64498681-64498700 Msa0564020:CDS 30.0%
! GCTATAAACATGGATTTTCA+GGG + chr4_1:64498682-64498701 Msa0564020:CDS 30.0%
! TTCAGTGAAAACAGTTTTTG+AGG - chr4_1:64498926-64498945 None:intergenic 30.0%
TTTGGTTGGATATTTGTAAG+AGG - chr4_1:64499000-64499019 None:intergenic 30.0%
! TCATTTTCAAATGCTTTGGT+TGG - chr4_1:64499014-64499033 None:intergenic 30.0%
CTGAAATTTCTGATCTTAAC+CGG - chr4_1:64499080-64499099 None:intergenic 30.0%
!! TTCATTTTCTAGTGTTTGGT+TGG - chr4_1:64499204-64499223 None:intergenic 30.0%
! AAATGGATTTCTTGCAATAC+GGG + chr4_1:64499223-64499242 Msa0564020:intron 30.0%
GTTGTTTGATCTTAATTGGA+CGG - chr4_1:64499282-64499301 None:intergenic 30.0%
CTGAGTTGTTTGATCTTAAT+TGG - chr4_1:64499286-64499305 None:intergenic 30.0%
! TTTTTAAATGCGATTTACCG+AGG + chr4_1:64499327-64499346 Msa0564020:intron 30.0%
!!! GACAACTCATATTTTAACCT+CGG - chr4_1:64499347-64499366 None:intergenic 30.0%
TACACAAAATCCCTAGAAAA+CGG + chr4_1:64499424-64499443 Msa0564020:intron 30.0%
AAGTTTCAATGATGAAGCAA+TGG + chr4_1:64499505-64499524 Msa0564020:CDS 30.0%
AGTTTCAATGATGAAGCAAT+GGG + chr4_1:64499506-64499525 Msa0564020:CDS 30.0%
AACTGTAACAAGAAGATCAT+TGG + chr4_1:64499587-64499606 Msa0564020:CDS 30.0%
! TGTGATCAGTTATTCCTTTT+AGG - chr4_1:64499625-64499644 None:intergenic 30.0%
GATCAACATACGAAAACAAA+GGG - chr4_1:64499946-64499965 None:intergenic 30.0%
TGATCAACATACGAAAACAA+AGG - chr4_1:64499947-64499966 None:intergenic 30.0%
! AAGGTTATTTCCAAGTGTAA+TGG - chr4_1:64500131-64500150 None:intergenic 30.0%
TTGGAAATAACCTTACTTTG+TGG + chr4_1:64500137-64500156 Msa0564020:CDS 30.0%
TGGAAATAACCTTACTTTGT+GGG + chr4_1:64500138-64500157 Msa0564020:CDS 30.0%
CAACTACTTCTGTATCAAAT+TGG + chr4_1:64500168-64500187 Msa0564020:intron 30.0%
ACAGTTGATTGATATAATGC+AGG + chr4_1:64500210-64500229 Msa0564020:intron 30.0%
CAGTTGATTGATATAATGCA+GGG + chr4_1:64500211-64500230 Msa0564020:intron 30.0%
GTATATACAATATTCAACGG+TGG + chr4_1:64500591-64500610 Msa0564020:intron 30.0%
ACTATGAAATGAAGTAACTC+TGG + chr4_1:64500642-64500661 Msa0564020:intron 30.0%
TCATAATCTACCTTAATGCA+CGG - chr4_1:64500948-64500967 None:intergenic 30.0%
ATTAAGGTAGATTATGAAGC+AGG + chr4_1:64500951-64500970 Msa0564020:CDS 30.0%
TTAAGGTAGATTATGAAGCA+GGG + chr4_1:64500952-64500971 Msa0564020:CDS 30.0%
TAACCTATATTAGAAGAGCA+AGG + chr4_1:64500985-64501004 Msa0564020:CDS 30.0%
TATGCATAGATTGACAAGAT+TGG + chr4_1:64501023-64501042 Msa0564020:intron 30.0%
TATTATTAAGCTCATGTGGA+AGG + chr4_1:64501077-64501096 Msa0564020:intron 30.0%
! AGTTTTCCAAAGACTGTTAT+AGG + chr4_1:64501118-64501137 Msa0564020:CDS 30.0%
! CATTTTCCTATAACAGTCTT+TGG - chr4_1:64501127-64501146 None:intergenic 30.0%
CAAAGACTGTTATAGGAAAA+TGG + chr4_1:64501125-64501144 Msa0564020:CDS 30.0%
CAAATTTCAGAAACATGATC+TGG - chr4_1:64501269-64501288 None:intergenic 30.0%
! TAAATAGAGAATTGTTGGCT+AGG + chr4_1:64501299-64501318 Msa0564020:three_prime_UTR 30.0%
ATTTGGATTAAGTCTAACTC+AGG + chr4_1:64501429-64501448 Msa0564020:three_prime_UTR 30.0%
ATCCTACAATACTACAGATA+TGG - chr4_1:64501472-64501491 None:intergenic 30.0%
! AGTGGATTCATATTCTTATC+TGG + chr4_1:64501838-64501857 Msa0564020:three_prime_UTR 30.0%
TGTAAAAGTTTAGGTGAGTT+GGG - chr4_1:64502288-64502307 None:intergenic 30.0%
TTGTAAAAGTTTAGGTGAGT+TGG - chr4_1:64502289-64502308 None:intergenic 30.0%
!! ACTCTCACTTTTATACCATA+AGG - chr4_1:64502818-64502837 None:intergenic 30.0%
ATTTCAACTCAAAAGTTGCA+TGG + chr4_1:64502899-64502918 Msa0564020:three_prime_UTR 30.0%
CAAACTAATTGCCAAAACAT+CGG - chr4_1:64503017-64503036 None:intergenic 30.0%
AAACAAGAGATGTGCTAGAA+AGG + chr4_1:64498262-64498281 Msa0564020:CDS 35.0%
ATTCTTCTGCAAATATCTCG+GGG - chr4_1:64498340-64498359 None:intergenic 35.0%
GATTCTTCTGCAAATATCTC+GGG - chr4_1:64498341-64498360 None:intergenic 35.0%
CATGTATACAATATGCACCT+AGG - chr4_1:64498475-64498494 None:intergenic 35.0%
CTAGGTGCATATTGTATACA+TGG + chr4_1:64498473-64498492 Msa0564020:intron 35.0%
TGTTATCTTCACTCTTAGGA+AGG + chr4_1:64498547-64498566 Msa0564020:CDS 35.0%
!! ACTTGCTATATCTTCTGCTT+GGG - chr4_1:64498730-64498749 None:intergenic 35.0%
!! TACTTGCTATATCTTCTGCT+TGG - chr4_1:64498731-64498750 None:intergenic 35.0%
ATACAATGTAGAGTTTCCAG+AGG + chr4_1:64498822-64498841 Msa0564020:intron 35.0%
GTAGTTTCTGTCATTCCAAA+TGG + chr4_1:64498844-64498863 Msa0564020:intron 35.0%
TGAAGTTTGTGAATGCCATT+TGG - chr4_1:64498862-64498881 None:intergenic 35.0%
AACTTCACACAACTAGAAGT+TGG + chr4_1:64498875-64498894 Msa0564020:intron 35.0%
ACTTCACACAACTAGAAGTT+GGG + chr4_1:64498876-64498895 Msa0564020:intron 35.0%
!! GTGAAAACAGTTTTTGAGGA+GGG - chr4_1:64498922-64498941 None:intergenic 35.0%
!! AGTGAAAACAGTTTTTGAGG+AGG - chr4_1:64498923-64498942 None:intergenic 35.0%
! GTTTTCACTGAAAGCAACTT+AGG + chr4_1:64498934-64498953 Msa0564020:intron 35.0%
ATGAGTTGTCCAGTGAAAAT+TGG + chr4_1:64499357-64499376 Msa0564020:intron 35.0%
!! CTTGATTTCTTGAAGGCATT+TGG + chr4_1:64499471-64499490 Msa0564020:intron 35.0%
AAAATTCCATCCAAGTGGAA+AGG + chr4_1:64499530-64499549 Msa0564020:CDS 35.0%
GATCTTCTTGTTACAGTTTG+TGG - chr4_1:64499585-64499604 None:intergenic 35.0%
! TATCCTCAAAGCATTTGACA+TGG + chr4_1:64499871-64499890 Msa0564020:CDS 35.0%
! GATGTCTTAACTGTTTCTCT+TGG + chr4_1:64499911-64499930 Msa0564020:CDS 35.0%
! TTAACTGTTTCTCTTGGCAT+TGG + chr4_1:64499917-64499936 Msa0564020:CDS 35.0%
AGAAACAACTGTGATACCTT+TGG - chr4_1:64500008-64500027 None:intergenic 35.0%
TTCGAAACGGTTTGAGAAAT+AGG - chr4_1:64500049-64500068 None:intergenic 35.0%
! AAAAGTCCTATCGATTGTAG+TGG - chr4_1:64500101-64500120 None:intergenic 35.0%
AAACACACTCTTGGATTTGT+CGG + chr4_1:64500252-64500271 Msa0564020:CDS 35.0%
TGTGTATGAAGAAGGAAGAA+AGG - chr4_1:64500334-64500353 None:intergenic 35.0%
CTTCTTCATACACACAAACA+CGG + chr4_1:64500340-64500359 Msa0564020:intron 35.0%
TTCTTCATACACACAAACAC+GGG + chr4_1:64500341-64500360 Msa0564020:intron 35.0%
! ACTCTGGCAAATTTTACTCT+TGG + chr4_1:64500658-64500677 Msa0564020:intron 35.0%
!! CTATGTCTTCCTTTGAAGTA+AGG + chr4_1:64500746-64500765 Msa0564020:intron 35.0%
ACTGACAATCCTTACTTCAA+AGG - chr4_1:64500758-64500777 None:intergenic 35.0%
TGGAAGTCTGAATGAAACAA+TGG + chr4_1:64500779-64500798 Msa0564020:CDS 35.0%
TCACCTTGCTCTTCTAATAT+AGG - chr4_1:64500991-64501010 None:intergenic 35.0%
TATATTAGAAGAGCAAGGTG+AGG + chr4_1:64500990-64501009 Msa0564020:intron 35.0%
TGCCATATCTGTAGTATTGT+AGG + chr4_1:64501467-64501486 Msa0564020:three_prime_UTR 35.0%
GTTATATATTGCTTCTCTGC+TGG - chr4_1:64501578-64501597 None:intergenic 35.0%
! GAGAAATTCGATTTGAGTGA+AGG + chr4_1:64501598-64501617 Msa0564020:three_prime_UTR 35.0%
TAAAATCCAAACACCCAACT+TGG + chr4_1:64501905-64501924 Msa0564020:three_prime_UTR 35.0%
TGTTACCAAAGCTGATCTTA+TGG - chr4_1:64501941-64501960 None:intergenic 35.0%
CGAACATCAACATAGTTGTT+TGG + chr4_1:64501974-64501993 Msa0564020:intron 35.0%
CATATACAACATTACCACAG+AGG + chr4_1:64502574-64502593 Msa0564020:three_prime_UTR 35.0%
GAATTGGATATAATCCTCTG+TGG - chr4_1:64502591-64502610 None:intergenic 35.0%
TATCCAATTCCTATGTTCCA+TGG + chr4_1:64502601-64502620 Msa0564020:three_prime_UTR 35.0%
ATCCAATTCCTATGTTCCAT+GGG + chr4_1:64502602-64502621 Msa0564020:three_prime_UTR 35.0%
TATTATGACCCATGGAACAT+AGG - chr4_1:64502613-64502632 None:intergenic 35.0%
!!! GGTTTTGGTCACTTTTCTAA+TGG - chr4_1:64502642-64502661 None:intergenic 35.0%
TTGATATGGAAGGAAGGTTA+AGG - chr4_1:64502706-64502725 None:intergenic 35.0%
TTGGAATTGATATGGAAGGA+AGG - chr4_1:64502712-64502731 None:intergenic 35.0%
! AGGTTTGGAATTGATATGGA+AGG - chr4_1:64502716-64502735 None:intergenic 35.0%
! CTTCAGGTTTGGAATTGATA+TGG - chr4_1:64502720-64502739 None:intergenic 35.0%
TTACTGTTGTATGACTCTTC+AGG - chr4_1:64502736-64502755 None:intergenic 35.0%
GCTATAGTGAATAGTCCTTA+TGG + chr4_1:64502800-64502819 Msa0564020:three_prime_UTR 35.0%
TGAAATGAAGCTTACGTTGA+AGG - chr4_1:64502885-64502904 None:intergenic 35.0%
TTGCATGGTGATTACAGATT+TGG + chr4_1:64502914-64502933 Msa0564020:three_prime_UTR 35.0%
CGGTAGTTAAGTATTCTTTG+AGG + chr4_1:64503085-64503104 Msa0564020:three_prime_UTR 35.0%
! GCTGTCTACTGATTAGATGA+TGG + chr4_1:64498226-64498245 Msa0564020:exon 40.0%
TCTTCACTCTTAGGAAGGTA+TGG + chr4_1:64498552-64498571 Msa0564020:intron 40.0%
ACTAGAAGTTGGGACTTCAT+TGG + chr4_1:64498886-64498905 Msa0564020:intron 40.0%
CTAGAAGTTGGGACTTCATT+GGG + chr4_1:64498887-64498906 Msa0564020:intron 40.0%
TAGAAGTTGGGACTTCATTG+GGG + chr4_1:64498888-64498907 Msa0564020:intron 40.0%
ACTGAAAGCAACTTAGGTCA+AGG + chr4_1:64498940-64498959 Msa0564020:intron 40.0%
TTAGGTCAAGGAACCATCAT+AGG + chr4_1:64498952-64498971 Msa0564020:intron 40.0%
CATTCATGCAGTCAGCAAAT+CGG + chr4_1:64499048-64499067 Msa0564020:intron 40.0%
CTGAGTCATCCGATGAAAAT+CGG + chr4_1:64499151-64499170 Msa0564020:intron 40.0%
! TAGCACCATCCGATTTTCAT+CGG - chr4_1:64499163-64499182 None:intergenic 40.0%
! GAAAATCGGATGGTGCTAAT+TGG + chr4_1:64499165-64499184 Msa0564020:intron 40.0%
CATTCATGCTGTCAGCAATT+TGG + chr4_1:64499254-64499273 Msa0564020:intron 40.0%
GTTGTCCAGTGAAAATTGGA+TGG + chr4_1:64499361-64499380 Msa0564020:intron 40.0%
! CTTCACCATCCAATTTTCAC+TGG - chr4_1:64499369-64499388 None:intergenic 40.0%
! TCTAGGGATTTTGTGTAGTC+AGG - chr4_1:64499421-64499440 None:intergenic 40.0%
!! CATTACAACGCCGTTTTCTA+GGG - chr4_1:64499437-64499456 None:intergenic 40.0%
!! ACATTACAACGCCGTTTTCT+AGG - chr4_1:64499438-64499457 None:intergenic 40.0%
TCATTGAAACTTGCAGACTC+TGG - chr4_1:64499497-64499516 None:intergenic 40.0%
TGGGAAAAATTCCATCCAAG+TGG + chr4_1:64499525-64499544 Msa0564020:CDS 40.0%
TTGACAAACTCCTTTCCACT+TGG - chr4_1:64499543-64499562 None:intergenic 40.0%
TGGAAAGGAGTTTGTCAAGT+TGG + chr4_1:64499545-64499564 Msa0564020:CDS 40.0%
!! AGAAGATCATTGGTGCTAGA+TGG + chr4_1:64499597-64499616 Msa0564020:CDS 40.0%
TGTCATTGTTTCCAAGGATG+AGG - chr4_1:64499655-64499674 None:intergenic 40.0%
! CTGTAGTGTCATTGTTTCCA+AGG - chr4_1:64499661-64499680 None:intergenic 40.0%
AATTATAGAGGCCTTGCTTC+TGG + chr4_1:64499761-64499780 Msa0564020:CDS 40.0%
TAGATAGCCAAGTGAGCTAA+AGG - chr4_1:64499806-64499825 None:intergenic 40.0%
TAGCCATGTCAAATGCTTTG+AGG - chr4_1:64499877-64499896 None:intergenic 40.0%
TTTGACATGGCTATACACGA+TGG + chr4_1:64499884-64499903 Msa0564020:CDS 40.0%
!! ATCACAGTTGTTTCTTCAGC+TGG + chr4_1:64500013-64500032 Msa0564020:CDS 40.0%
GTTTCTTCAGCTGGAAATTC+TGG + chr4_1:64500022-64500041 Msa0564020:CDS 40.0%
TTTCCAACAGCCATTACACT+TGG + chr4_1:64500118-64500137 Msa0564020:CDS 40.0%
TTTCCAAGTGTAATGGCTGT+TGG - chr4_1:64500124-64500143 None:intergenic 40.0%
TGTAGCATACCCACAAAGTA+AGG - chr4_1:64500150-64500169 None:intergenic 40.0%
GAGTGTGTTTCCATTGTCAA+TGG - chr4_1:64500242-64500261 None:intergenic 40.0%
TGACAATGGAAACACACTCT+TGG + chr4_1:64500243-64500262 Msa0564020:CDS 40.0%
CGTGTTTGTGTGTATGAAGA+AGG - chr4_1:64500342-64500361 None:intergenic 40.0%
TGAAGTAAGGATTGTCAGTC+TGG + chr4_1:64500759-64500778 Msa0564020:intron 40.0%
TTCTGCAGCACTTACAGTAA+AGG + chr4_1:64500854-64500873 Msa0564020:CDS 40.0%
! GAAGATGGACTCAATGAATG+TGG + chr4_1:64500915-64500934 Msa0564020:CDS 40.0%
TGGTATACTTCCGTGCATTA+AGG + chr4_1:64500935-64500954 Msa0564020:CDS 40.0%
GATGAGAAAGATGCAACTCT+TGG - chr4_1:64501157-64501176 None:intergenic 40.0%
GTTGCATCTTTCTCATCTAG+AGG + chr4_1:64501160-64501179 Msa0564020:CDS 40.0%
TGGATTAAGTCTAACTCAGG+TGG + chr4_1:64501432-64501451 Msa0564020:three_prime_UTR 40.0%
ATCATAACCTGCACTCTTCT+GGG + chr4_1:64501731-64501750 Msa0564020:three_prime_UTR 40.0%
GAATGACTGATGGAAATAGC+CGG + chr4_1:64501753-64501772 Msa0564020:three_prime_UTR 40.0%
! CTGCTCTTTTTACTTCCCTT+GGG - chr4_1:64501820-64501839 None:intergenic 40.0%
! ACTGCTCTTTTTACTTCCCT+TGG - chr4_1:64501821-64501840 None:intergenic 40.0%
AAGGGAAGTAAAAAGAGCAG+TGG + chr4_1:64501820-64501839 Msa0564020:three_prime_UTR 40.0%
ATCAATGTCTTGTCCTCATG+TGG + chr4_1:64501864-64501883 Msa0564020:three_prime_UTR 40.0%
! AGATCAGCTTTGGTAACAAC+AGG + chr4_1:64501943-64501962 Msa0564020:three_prime_UTR 40.0%
! TTTAGGTGAGTTGGGTCTTA+GGG - chr4_1:64502280-64502299 None:intergenic 40.0%
!! CCTGCATTGATTGCTTTGTT+GGG - chr4_1:64502551-64502570 None:intergenic 40.0%
!! TCCTGCATTGATTGCTTTGT+TGG - chr4_1:64502552-64502571 None:intergenic 40.0%
! GTTGCAACTTGTAGTGGTTT+TGG - chr4_1:64502657-64502676 None:intergenic 40.0%
TTGTGTGTTGCAACTTGTAG+TGG - chr4_1:64502663-64502682 None:intergenic 40.0%
! GTTGTATGACTCTTCAGGTT+TGG - chr4_1:64502731-64502750 None:intergenic 40.0%
ATGAGAACAGTGACAAACGT+TGG + chr4_1:64502755-64502774 Msa0564020:three_prime_UTR 40.0%
ACAGATTTGGAAGCCTAACA+TGG + chr4_1:64502927-64502946 Msa0564020:three_prime_UTR 40.0%
! CAGATGGCAATCATTTTGTG+AGG + chr4_1:64502951-64502970 Msa0564020:three_prime_UTR 40.0%
TGAGGATACCAATAGCTGTT+AGG + chr4_1:64502969-64502988 Msa0564020:three_prime_UTR 40.0%
TGTATGGTCCTAACAGCTAT+TGG - chr4_1:64502980-64502999 None:intergenic 40.0%
GGAATGACAGAAACTACCTC+TGG - chr4_1:64498841-64498860 None:intergenic 45.0%
!! CAGTTTTTGAGGAGGGATGA+TGG - chr4_1:64498915-64498934 None:intergenic 45.0%
TGTGTCTATGACGCCTATGA+TGG - chr4_1:64498968-64498987 None:intergenic 45.0%
ATCATAGGCGTCATAGACAC+AGG + chr4_1:64498967-64498986 Msa0564020:intron 45.0%
GTCATCCGATGAAAATCGGA+TGG + chr4_1:64499155-64499174 Msa0564020:intron 45.0%
CAAACTCCTTTCCACTTGGA+TGG - chr4_1:64499539-64499558 None:intergenic 45.0%
GGTGCTAGATGGTTCCTAAA+AGG + chr4_1:64499608-64499627 Msa0564020:CDS 45.0%
CACACTAAGAACCTCATCCT+TGG + chr4_1:64499641-64499660 Msa0564020:CDS 45.0%
CTCTCAGCTAGAGATGCTAT+TGG + chr4_1:64499686-64499705 Msa0564020:CDS 45.0%
TTGAAGCTGTGTGAGTTCCA+TGG - chr4_1:64499712-64499731 None:intergenic 45.0%
CTCTTGCTAAACCAGAAGCA+AGG - chr4_1:64499775-64499794 None:intergenic 45.0%
!! CTTGCTTCTGGTTTAGCAAG+AGG + chr4_1:64499773-64499792 Msa0564020:CDS 45.0%
TGGCTATCTACAAAGCTTGC+TGG + chr4_1:64499816-64499835 Msa0564020:CDS 45.0%
! GGCTATCTACAAAGCTTGCT+GGG + chr4_1:64499817-64499836 Msa0564020:CDS 45.0%
TCTTTCCACGCAACTTCCAA+AGG + chr4_1:64499989-64500008 Msa0564020:CDS 45.0%
! TGATACCTTTGGAAGTTGCG+TGG - chr4_1:64499997-64500016 None:intergenic 45.0%
!! CCATGGTGCTGTATTCGAAA+CGG - chr4_1:64500062-64500081 None:intergenic 45.0%
ACCATGGCTCATTACAGTTG+CGG + chr4_1:64500075-64500094 Msa0564020:CDS 45.0%
TCTCACGCTAAATCATCCGA+TGG - chr4_1:64500311-64500330 None:intergenic 45.0%
!! GGATTAGTCGGTTCTTGGAT+CGG - chr4_1:64500541-64500560 None:intergenic 45.0%
TCCAAGAACCGACTAATCCT+AGG + chr4_1:64500542-64500561 Msa0564020:intron 45.0%
CCAAGAACCGACTAATCCTA+GGG + chr4_1:64500543-64500562 Msa0564020:intron 45.0%
CAAGAACCGACTAATCCTAG+GGG + chr4_1:64500544-64500563 Msa0564020:intron 45.0%
GCCTTGCTTCTGTGTTTACA+CGG + chr4_1:64500566-64500585 Msa0564020:intron 45.0%
ACCGTGTAAACACAGAAGCA+AGG - chr4_1:64500570-64500589 None:intergenic 45.0%
TTGCTTCTGTGTTTACACGG+TGG + chr4_1:64500569-64500588 Msa0564020:intron 45.0%
CTGAATGAAACAATGGCAGC+AGG + chr4_1:64500786-64500805 Msa0564020:CDS 45.0%
GCACTTACAGTAAAGGAAGC+TGG + chr4_1:64500861-64500880 Msa0564020:CDS 45.0%
CTTACAGTAAAGGAAGCTGG+TGG + chr4_1:64500864-64500883 Msa0564020:CDS 45.0%
TATGCACAGCGTCATGAAGA+TGG + chr4_1:64500900-64500919 Msa0564020:CDS 45.0%
! ACAGTTGGAGACAAGGTACT+AGG - chr4_1:64501187-64501206 None:intergenic 45.0%
CTTTAGCACAGTTGGAGACA+AGG - chr4_1:64501194-64501213 None:intergenic 45.0%
CTTGTCTCCAACTGTGCTAA+AGG + chr4_1:64501192-64501211 Msa0564020:CDS 45.0%
GGCTATACCTTTAGCACAGT+TGG - chr4_1:64501202-64501221 None:intergenic 45.0%
! GAAAGAAAAGCACAATCGGC+CGG + chr4_1:64501330-64501349 Msa0564020:three_prime_UTR 45.0%
CATCATAACCTGCACTCTTC+TGG + chr4_1:64501730-64501749 Msa0564020:three_prime_UTR 45.0%
! ACTCTTCTGGGAATGACTGA+TGG + chr4_1:64501743-64501762 Msa0564020:three_prime_UTR 45.0%
! CTCTTTTTACTTCCCTTGGG+TGG - chr4_1:64501817-64501836 None:intergenic 45.0%
AAAGCTGATCTTATGGCTGC+AGG - chr4_1:64501934-64501953 None:intergenic 45.0%
TGCAGCCATAAGATCAGCTT+TGG + chr4_1:64501933-64501952 Msa0564020:three_prime_UTR 45.0%
ACATCTGTTAGTGCTCTCTG+AGG + chr4_1:64502221-64502240 Msa0564020:intron 45.0%
! TTAGGTGAGTTGGGTCTTAG+GGG - chr4_1:64502279-64502298 None:intergenic 45.0%
! GTTTAGGTGAGTTGGGTCTT+AGG - chr4_1:64502281-64502300 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_1:64502319-64502338 Msa0564020:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_1:64502320-64502339 Msa0564020:intron 45.0%
! AAAAGTGCAGCCTCTCAAAG+CGG + chr4_1:64502449-64502468 Msa0564020:intron 45.0%
GCAGCAGACCCATTTGATAT+GGG + chr4_1:64502509-64502528 Msa0564020:three_prime_UTR 45.0%
CAGCAGACCCATTTGATATG+GGG + chr4_1:64502510-64502529 Msa0564020:three_prime_UTR 45.0%
AGCAGACCCATTTGATATGG+GGG + chr4_1:64502511-64502530 Msa0564020:three_prime_UTR 45.0%
GTCCATCCCCCATATCAAAT+GGG - chr4_1:64502520-64502539 None:intergenic 45.0%
TGTCCATCCCCCATATCAAA+TGG - chr4_1:64502521-64502540 None:intergenic 45.0%
CCCAACAAAGCAATCAATGC+AGG + chr4_1:64502548-64502567 Msa0564020:three_prime_UTR 45.0%
GACCCATGGAACATAGGAAT+TGG - chr4_1:64502607-64502626 None:intergenic 45.0%
GGATGCTGTATTATGACCCA+TGG - chr4_1:64502621-64502640 None:intergenic 45.0%
GATTGCCATCTGTCCATGTT+AGG - chr4_1:64502943-64502962 None:intergenic 45.0%
GCTAGAGATGCTATTGGCCA+TGG + chr4_1:64499692-64499711 Msa0564020:CDS 50.0%
!! GCTTCTGGTTTAGCAAGAGG+AGG + chr4_1:64499776-64499795 Msa0564020:CDS 50.0%
!! AGGAGCACCTTTAGCTCACT+TGG + chr4_1:64499796-64499815 Msa0564020:CDS 50.0%
GCATCAGTACAGTGTCCAAC+AGG - chr4_1:64499848-64499867 None:intergenic 50.0%
CAACGCGACACGATAGCAAT+TGG + chr4_1:64499965-64499984 Msa0564020:CDS 50.0%
CCGTTTCGAATACAGCACCA+TGG + chr4_1:64500059-64500078 Msa0564020:CDS 50.0%
TTGCGGCCACTACAATCGAT+AGG + chr4_1:64500092-64500111 Msa0564020:CDS 50.0%
CAGGGACAGTCCATTGACAA+TGG + chr4_1:64500229-64500248 Msa0564020:intron 50.0%
CACACTCTTGGATTTGTCGG+CGG + chr4_1:64500255-64500274 Msa0564020:CDS 50.0%
!! CCCTAGGATTAGTCGGTTCT+TGG - chr4_1:64500546-64500565 None:intergenic 50.0%
GTAAAGGAAGCTGGTGGAGT+TGG + chr4_1:64500870-64500889 Msa0564020:CDS 50.0%
GTGGAAGGTTTCCAACTGCA+AGG + chr4_1:64501092-64501111 Msa0564020:intron 50.0%
GGAAAACTCAGCCTTGCAGT+TGG - chr4_1:64501106-64501125 None:intergenic 50.0%
! AGTCATTCCCAGAAGAGTGC+AGG - chr4_1:64501741-64501760 None:intergenic 50.0%
TGCAGCCAAAATGTCCACAC+CGG - chr4_1:64501791-64501810 None:intergenic 50.0%
TTTGGCTGCATTTCCACCCA+AGG + chr4_1:64501801-64501820 Msa0564020:three_prime_UTR 50.0%
TTGGCTGCATTTCCACCCAA+GGG + chr4_1:64501802-64501821 Msa0564020:three_prime_UTR 50.0%
ATGTCTTGTCCTCATGTGGC+AGG + chr4_1:64501868-64501887 Msa0564020:three_prime_UTR 50.0%
! AGGTGACCAAGTTGGGTGTT+TGG - chr4_1:64501914-64501933 None:intergenic 50.0%
CTAGGGTCAGACAAGCCTTA+AGG - chr4_1:64502252-64502271 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_1:64502321-64502340 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_1:64502318-64502337 Msa0564020:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr4_1:64502324-64502343 Msa0564020:intron 50.0%
! TCCATCAGTTCCGCTTTGAG+AGG - chr4_1:64502462-64502481 None:intergenic 50.0%
TCTCAAAGCGGAACTGATGG+AGG + chr4_1:64502461-64502480 Msa0564020:three_prime_UTR 50.0%
GGCAGCAGACCCATTTGATA+TGG + chr4_1:64502508-64502527 Msa0564020:three_prime_UTR 50.0%
GACCCATTTGATATGGGGGA+TGG + chr4_1:64502515-64502534 Msa0564020:three_prime_UTR 50.0%
GGAAGCCTAACATGGACAGA+TGG + chr4_1:64502935-64502954 Msa0564020:three_prime_UTR 50.0%
CACACAGCTTCAACAGCAGC+TGG + chr4_1:64499719-64499738 Msa0564020:CDS 55.0%
GCCGCAACTGTAATGAGCCA+TGG - chr4_1:64500079-64500098 None:intergenic 55.0%
TGGATCACGTGCAATGCGCT+CGG - chr4_1:64500291-64500310 None:intergenic 55.0%
GCGCATTGCACGTGATCCAT+CGG + chr4_1:64500292-64500311 Msa0564020:intron 55.0%
! GCAAGGCCCCTAGGATTAGT+CGG - chr4_1:64500553-64500572 None:intergenic 55.0%
AACACAGAAGCAAGGCCCCT+AGG - chr4_1:64500562-64500581 None:intergenic 55.0%
! AGCACCCGGTGTGGACATTT+TGG + chr4_1:64501783-64501802 Msa0564020:three_prime_UTR 55.0%
GCAGCCAAAATGTCCACACC+GGG - chr4_1:64501790-64501809 None:intergenic 55.0%
GCTGCTATTCCTGCCACATG+AGG - chr4_1:64501880-64501899 None:intergenic 55.0%
TGGCTGCAGGTGACCAAGTT+GGG - chr4_1:64501921-64501940 None:intergenic 55.0%
ATGGCTGCAGGTGACCAAGT+TGG - chr4_1:64501922-64501941 None:intergenic 55.0%
!! CTCTCTGAGGCTGAGCCTTA+AGG + chr4_1:64502234-64502253 Msa0564020:intron 55.0%
TGGGTCTTAGGGGCTCACTA+GGG - chr4_1:64502269-64502288 None:intergenic 55.0%
TTGGGTCTTAGGGGCTCACT+AGG - chr4_1:64502270-64502289 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr4_1:64502326-64502345 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr4_1:64502332-64502351 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4_1:64502333-64502352 None:intergenic 55.0%
GCCTCTCAAAGCGGAACTGA+TGG + chr4_1:64502458-64502477 Msa0564020:intron 55.0%
TGATATGGGGGATGGACACG+TGG + chr4_1:64502523-64502542 Msa0564020:three_prime_UTR 55.0%
GTCAGCAAATCGGCGTCGTC+CGG + chr4_1:64499058-64499077 Msa0564020:intron 60.0%
! GCTTGCTGGGACGTTCCTGT+TGG + chr4_1:64499830-64499849 Msa0564020:CDS 60.0%
TAGCCGGACATAGCAGCACC+CGG + chr4_1:64501769-64501788 Msa0564020:three_prime_UTR 60.0%
!! ACACCGGGTGCTGCTATGTC+CGG - chr4_1:64501775-64501794 None:intergenic 60.0%
GGACATAGCAGCACCCGGTG+TGG + chr4_1:64501774-64501793 Msa0564020:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 64498215 64503163 64498215 ID=Msa0564020;Name=Msa0564020
chr4_1 mRNA 64498215 64503163 64498215 ID=Msa0564020-mRNA-1;Parent=Msa0564020;Name=Msa0564020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=27|0.71|0.75|1|1|0.87|8|1450|470
chr4_1 exon 64498215 64498367 64498215 ID=Msa0564020-mRNA-1:exon:20643;Parent=Msa0564020-mRNA-1
chr4_1 exon 64498477 64498568 64498477 ID=Msa0564020-mRNA-1:exon:20644;Parent=Msa0564020-mRNA-1
chr4_1 exon 64498650 64498747 64498650 ID=Msa0564020-mRNA-1:exon:20645;Parent=Msa0564020-mRNA-1
chr4_1 exon 64499498 64500159 64499498 ID=Msa0564020-mRNA-1:exon:20646;Parent=Msa0564020-mRNA-1
chr4_1 exon 64500232 64500302 64500232 ID=Msa0564020-mRNA-1:exon:20647;Parent=Msa0564020-mRNA-1
chr4_1 exon 64500764 64501006 64500764 ID=Msa0564020-mRNA-1:exon:20648;Parent=Msa0564020-mRNA-1
chr4_1 exon 64501099 64501964 64501099 ID=Msa0564020-mRNA-1:exon:20649;Parent=Msa0564020-mRNA-1
chr4_1 exon 64502459 64503163 64502459 ID=Msa0564020-mRNA-1:exon:20650;Parent=Msa0564020-mRNA-1
chr4_1 five_prime_UTR 64498215 64498241 64498215 ID=Msa0564020-mRNA-1:five_prime_utr;Parent=Msa0564020-mRNA-1
chr4_1 CDS 64498242 64498367 64498242 ID=Msa0564020-mRNA-1:cds;Parent=Msa0564020-mRNA-1
chr4_1 CDS 64498477 64498568 64498477 ID=Msa0564020-mRNA-1:cds;Parent=Msa0564020-mRNA-1
chr4_1 CDS 64498650 64498747 64498650 ID=Msa0564020-mRNA-1:cds;Parent=Msa0564020-mRNA-1
chr4_1 CDS 64499498 64500159 64499498 ID=Msa0564020-mRNA-1:cds;Parent=Msa0564020-mRNA-1
chr4_1 CDS 64500232 64500302 64500232 ID=Msa0564020-mRNA-1:cds;Parent=Msa0564020-mRNA-1
chr4_1 CDS 64500764 64501006 64500764 ID=Msa0564020-mRNA-1:cds;Parent=Msa0564020-mRNA-1
chr4_1 CDS 64501099 64501219 64501099 ID=Msa0564020-mRNA-1:cds;Parent=Msa0564020-mRNA-1
chr4_1 three_prime_UTR 64501220 64501964 64501220 ID=Msa0564020-mRNA-1:three_prime_utr;Parent=Msa0564020-mRNA-1
chr4_1 three_prime_UTR 64502459 64503163 64502459 ID=Msa0564020-mRNA-1:three_prime_utr;Parent=Msa0564020-mRNA-1
Gene Sequence

>Msa0564020

ATGATGGAAACTAATTCAGGAAACAAGAGATGTGCTAGAAAGGTTCAATTGCTTGTAACTTCAGCTCTTCTTTTACTGCAAAGCTTTCTGATCATCCCCGAGATATTTGCAGAAGAATCAAGCTGTGTGCATATTGTATACATGGGAGAAAAGATATATCATAATCCAGAAACTGCTAAAAAGTATCACCACAAAATGTTATCTTCACTCTTAGGAAGCAAAGAAGATGCAAAGAATTCACTTCTTTATAGCTATAAACATGGATTTTCAGGGTTTGCTGCTAGAATGACAAAGTCCCAAGCAGAAGATATAGCAAAGTCTGCAAGTTTCAATGATGAAGCAATGGGAAAAATTCCATCCAAGTGGAAAGGAGTTTGTCAAGTTGGAGAAAAATTTAACTCCACAAACTGTAACAAGAAGATCATTGGTGCTAGATGGTTCCTAAAAGGAATAACTGATCACACTAAGAACCTCATCCTTGGAAACAATGACACTACAGAATATCTCTCAGCTAGAGATGCTATTGGCCATGGAACTCACACAGCTTCAACAGCAGCTGGATATTATGTAGAAAATGCAAATTATAGAGGCCTTGCTTCTGGTTTAGCAAGAGGAGGAGCACCTTTAGCTCACTTGGCTATCTACAAAGCTTGCTGGGACGTTCCTGTTGGACACTGTACTGATGCTGATATCCTCAAAGCATTTGACATGGCTATACACGATGGTGTAGATGTCTTAACTGTTTCTCTTGGCATTGGCATCCCTTTGTTTTCGTATGTTGATCAACGCGACACGATAGCAATTGGTTCTTTCCACGCAACTTCCAAAGGTATCACAGTTGTTTCTTCAGCTGGAAATTCTGGTCCTATTTCTCAAACCGTTTCGAATACAGCACCATGGCTCATTACAGTTGCGGCCACTACAATCGATAGGACTTTTCCAACAGCCATTACACTTGGAAATAACCTTACTTTGTGGGGACAGTCCATTGACAATGGAAACACACTCTTGGATTTGTCGGCGGCTCACATACTCCGAGCGCATTGCACTAAGGATTGTCAGTCTGGAAGTCTGAATGAAACAATGGCAGCAGGAAAAATTGTTCTATGCTTTTCAGTATCAGATCAACAAGATATTGTTTCTGCAGCACTTACAGTAAAGGAAGCTGGTGGAGTTGGACTAATATATGCACAGCGTCATGAAGATGGACTCAATGAATGTGGTATACTTCCGTGCATTAAGGTAGATTATGAAGCAGGGACACAACTGTTAACCTATATTAGAAGAGCAAGGTTTCCAACTGCAAGGCTGAGTTTTCCAAAGACTGTTATAGGAAAATGGATATCTCCAAGAGTTGCATCTTTCTCATCTAGAGGACCTAGTACCTTGTCTCCAACTGTGCTAAAGGTATAG
Protein sequence

>Msa0564020

MMETNSGNKRCARKVQLLVTSALLLLQSFLIIPEIFAEESSCVHIVYMGEKIYHNPETAKKYHHKMLSSLLGSKEDAKNSLLYSYKHGFSGFAARMTKSQAEDIAKSASFNDEAMGKIPSKWKGVCQVGEKFNSTNCNKKIIGARWFLKGITDHTKNLILGNNDTTEYLSARDAIGHGTHTASTAAGYYVENANYRGLASGLARGGAPLAHLAIYKACWDVPVGHCTDADILKAFDMAIHDGVDVLTVSLGIGIPLFSYVDQRDTIAIGSFHATSKGITVVSSAGNSGPISQTVSNTAPWLITVAATTIDRTFPTAITLGNNLTLWGQSIDNGNTLLDLSAAHILRAHCTKDCQSGSLNETMAAGKIVLCFSVSDQQDIVSAALTVKEAGGVGLIYAQRHEDGLNECGILPCIKVDYEAGTQLLTYIRRARFPTARLSFPKTVIGKWISPRVASFSSRGPSTLSPTVLKV*