AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395260 MtrunA17_Chr1g0196901 99.345 458 3 0 1 458 1 458 0.0 941
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395260 AT5G07590.2 82.096 458 82 0 1 458 1 458 0.0 798
Msa1395260 AT5G07590.1 82.096 458 82 0 1 458 1 458 0.0 798
Msa1395260 AT5G07590.3 82.096 458 82 0 1 458 1 458 0.0 798
Msa1395260 AT5G07590.4 81.186 388 73 0 71 458 1 388 0.0 674

Find 151 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCCCTGTGGTCAGTTTC+TGG 0.169179 tig0021921:+104950 Msa1395260:CDS
ACGATAGTTCTATAGTAATA+TGG 0.234418 tig0021921:+103247 Msa1395260:CDS
CAGCTTACCGATTCCTTGTT+TGG 0.246089 tig0021921:-105535 None:intergenic
AGCTTACCGATTCCTTGTTT+GGG 0.251983 tig0021921:-105534 None:intergenic
GTTGCCAAAGCATGCTTCTA+AGG 0.256616 tig0021921:+103071 Msa1395260:CDS
TTGTCATTCATGGGAAATAA+TGG 0.260909 tig0021921:+103173 Msa1395260:CDS
TTCACTAGATTCTGGCAATA+AGG 0.264051 tig0021921:-106491 None:intergenic
ACCGAATCATTGTTAGAGTT+TGG 0.271747 tig0021921:-106942 None:intergenic
TCTTCCAAGTTAAATGATTC+AGG 0.272275 tig0021921:-105004 None:intergenic
GTAAGTATGTGACGACTATC+TGG 0.283995 tig0021921:-102982 None:intergenic
ATCTGTTATCTTGTCATTCA+TGG 0.293790 tig0021921:+103163 Msa1395260:CDS
TCTTGCATGTCCACTCTGGC+TGG 0.314236 tig0021921:-102918 None:intergenic
TTGTGATGACATTAATTCTA+AGG 0.319324 tig0021921:+106883 Msa1395260:three_prime_UTR
CCGATTCCTTGTTTGGGGTT+AGG 0.323650 tig0021921:-105528 None:intergenic
TTGAATTTGCGGTGTGATAA+TGG 0.326728 tig0021921:+101546 Msa1395260:exon
TTCAGTTGCGTTTAACAGTT+TGG 0.338480 tig0021921:+103016 Msa1395260:CDS
GAAAAGTATATGAAACAAAA+AGG 0.351916 tig0021921:+101349 Msa1395260:five_prime_UTR
CCCTATCAGAGTGGCAGCTT+GGG 0.363366 tig0021921:+106285 Msa1395260:CDS
CAAGCATATGAAAGTGGATT+AGG 0.363542 tig0021921:+104909 Msa1395260:CDS
TCGTGACACTCTTTCTTTCA+AGG 0.366996 tig0021921:+101660 Msa1395260:CDS
TTCTGAAATGGTAAATTGAT+TGG 0.374213 tig0021921:-105489 None:intergenic
TTACATTCTTATTTCTGATA+AGG 0.378563 tig0021921:-106854 None:intergenic
GAGCTATATTCACTAGATTC+TGG 0.387589 tig0021921:-106499 None:intergenic
TGGCAGTTGTCTGCTTCTTA+AGG 0.388500 tig0021921:+106438 Msa1395260:CDS
GACAGACATTAGATCTGAAA+TGG 0.390143 tig0021921:-101382 None:intergenic
ACAAAATTAGCTATATTGAA+TGG 0.394275 tig0021921:+102827 Msa1395260:CDS
AAGTGAGTAAAACAAAATTA+TGG 0.397073 tig0021921:+106539 Msa1395260:three_prime_UTR
ACCTCATACCTTACTCTAAA+GGG 0.407625 tig0021921:-105456 None:intergenic
AGAGTGTCTCTCCTGTTTGT+TGG 0.409836 tig0021921:+106663 Msa1395260:three_prime_UTR
GGGGTTTCCTTTACAAGAGA+TGG 0.414516 tig0021921:+103093 Msa1395260:CDS
TTGTCTGCTTCTTAAGGATA+AGG 0.414943 tig0021921:+106444 Msa1395260:CDS
TGCCATCAGAATTCCACTTC+AGG 0.415273 tig0021921:-106420 None:intergenic
CAAGGGCCACGGACTGCATA+TGG 0.415280 tig0021921:-105047 None:intergenic
CACTGAATGTTACAAACAAA+CGG 0.417653 tig0021921:+101573 Msa1395260:CDS
TCACTAGATTCTGGCAATAA+GGG 0.418573 tig0021921:-106490 None:intergenic
CTTACTCTAAAGGGTCGTTC+TGG 0.420663 tig0021921:-105447 None:intergenic
AAACGAAACCCTTGAATTTG+CGG 0.422643 tig0021921:+101535 Msa1395260:five_prime_UTR
TCCCAAGCTGCCACTCTGAT+AGG 0.424058 tig0021921:-106286 None:intergenic
GATTCAGGACTCGCAGCATC+TGG 0.433237 tig0021921:-104989 None:intergenic
TGCATTTGGGAAAATTCAAA+AGG 0.433598 tig0021921:+106772 Msa1395260:three_prime_UTR
CTGTGGTCAGTTTCTGGCAG+TGG 0.439090 tig0021921:+104956 Msa1395260:CDS
CGATAGTTCTATAGTAATAT+GGG 0.442798 tig0021921:+103248 Msa1395260:CDS
TCAGCAGGAGGCTTCTGAAA+TGG 0.444822 tig0021921:-105501 None:intergenic
TGTCATTCATGGGAAATAAT+GGG 0.445106 tig0021921:+103174 Msa1395260:CDS
GAGTGTCTCTCCTGTTTGTT+GGG 0.453736 tig0021921:+106664 Msa1395260:three_prime_UTR
AGTGACCAAGCCTGTATCAT+TGG 0.453814 tig0021921:-102892 None:intergenic
GTCTCTCCTGTTTGTTGGGT+AGG 0.457436 tig0021921:+106668 Msa1395260:three_prime_UTR
CATGTATAAATGTGTGCTTC+CGG 0.459983 tig0021921:-106338 None:intergenic
TTATACATGTGGACCCCATC+TGG 0.460008 tig0021921:+106352 Msa1395260:CDS
GACAAGATAACAGATTTATA+TGG 0.464301 tig0021921:-103155 None:intergenic
CAAAATTAGCTATATTGAAT+GGG 0.469114 tig0021921:+102828 Msa1395260:CDS
GCGTTTAACAGTTTGGTCAC+TGG 0.470789 tig0021921:+103023 Msa1395260:CDS
TGCTGTTGACACTCTAGACT+TGG 0.470800 tig0021921:+103203 Msa1395260:CDS
ACCCTATCAGAGTGGCAGCT+TGG 0.472760 tig0021921:+106284 Msa1395260:CDS
ATTATCACACCGCAAATTCA+AGG 0.473274 tig0021921:-101544 None:intergenic
AAGCATGCTTTGGCAACTGC+AGG 0.473367 tig0021921:-103065 None:intergenic
TTGGGGTTAGGTTTCTCAGC+AGG 0.473409 tig0021921:-105516 None:intergenic
TTTCGATAACAGACCTGAAG+TGG 0.477463 tig0021921:+106407 Msa1395260:CDS
CTATCTTTATCTTTGTGCAC+CGG 0.480844 tig0021921:+106575 Msa1395260:three_prime_UTR
CATTGCGAGTACATATGTAT+TGG 0.480916 tig0021921:-106189 None:intergenic
CAGAACGACCCTTTAGAGTA+AGG 0.481336 tig0021921:+105448 Msa1395260:CDS
TCCAAACTCTAACAATGATT+CGG 0.485791 tig0021921:+106941 Msa1395260:three_prime_UTR
TTGAAAAGACACCTTCCGTC+TGG 0.486492 tig0021921:-104882 None:intergenic
TGCAAAACGAAAGGTTTCAC+TGG 0.486922 tig0021921:-106753 None:intergenic
GCATATCCTACCCAACAAAC+AGG 0.490821 tig0021921:-106674 None:intergenic
ACGGCTAAGAAACGAGCATT+GGG 0.492449 tig0021921:-101613 None:intergenic
TGCCTACAGTACTCTGGGTA+TGG 0.492486 tig0021921:+106218 Msa1395260:CDS
GGATTCACCACTTGATTACA+AGG 0.493726 tig0021921:+103269 Msa1395260:CDS
ATAGTATGCCTACAGTACTC+TGG 0.496387 tig0021921:+106212 Msa1395260:CDS
TCTGTTATCTTGTCATTCAT+GGG 0.498192 tig0021921:+103164 Msa1395260:CDS
TAATGTGAGTGAGTGCAGTT+TGG 0.500015 tig0021921:-101443 None:intergenic
GTTATCGAAAATTGTGGTAG+AGG 0.501423 tig0021921:-106394 None:intergenic
TGTGGTCAGTTTCTGGCAGT+GGG 0.509705 tig0021921:+104957 Msa1395260:CDS
AAGTATCAAGCATATGAAAG+TGG 0.510080 tig0021921:+104903 Msa1395260:CDS
TTAATCATGATTAGTGAAAA+CGG 0.511539 tig0021921:+101463 Msa1395260:five_prime_UTR
AGAGGATGTACTCAGAATCA+AGG 0.514760 tig0021921:-102852 None:intergenic
CTTGCATGTCCACTCTGGCT+GGG 0.514966 tig0021921:-102917 None:intergenic
ATCTAATGTCTGTCTTCACT+TGG 0.521957 tig0021921:+101391 Msa1395260:five_prime_UTR
GGGTTAGGTTTCTCAGCAGG+AGG 0.523289 tig0021921:-105513 None:intergenic
ACTGAATGTTACAAACAAAC+GGG 0.523630 tig0021921:+101574 Msa1395260:CDS
GACCTCATACCTTACTCTAA+AGG 0.524033 tig0021921:-105457 None:intergenic
GAATTTGAATTTACAACTGA+AGG 0.526054 tig0021921:-106636 None:intergenic
TCTATCTTGCATGTCCACTC+TGG 0.528453 tig0021921:-102922 None:intergenic
TAGAGGAACATGAACACAAA+AGG 0.535149 tig0021921:-106377 None:intergenic
CCCAAGCTGCCACTCTGATA+GGG 0.538485 tig0021921:-106285 None:intergenic
TTGCCAAAGCATGCTTCTAA+GGG 0.541007 tig0021921:+103072 Msa1395260:CDS
CCTAACCCCAAACAAGGAAT+CGG 0.541197 tig0021921:+105528 Msa1395260:CDS
TTTCCCAAATGCAAAACGAA+AGG 0.546608 tig0021921:-106762 None:intergenic
AAGATAGACGAAGGTCCTGC+TGG 0.548383 tig0021921:+102937 Msa1395260:CDS
CGGGTAGGTAAGTGTAGCTA+AGG 0.549370 tig0021921:+106595 Msa1395260:three_prime_UTR
AAAAGCCAATGATACAGGCT+TGG 0.553037 tig0021921:+102887 Msa1395260:CDS
TACAGCAATCTTAGTGCAGA+AGG 0.553737 tig0021921:+106261 Msa1395260:CDS
TAGAGTAAGGTATGAGGTCA+TGG 0.554199 tig0021921:+105461 Msa1395260:CDS
GACGGCTAAGAAACGAGCAT+TGG 0.557333 tig0021921:-101614 None:intergenic
TGCTTCCGGTGCAGAAAACA+AGG 0.559234 tig0021921:-106324 None:intergenic
GAGTCCTGAATCATTTAACT+TGG 0.564823 tig0021921:+105000 Msa1395260:CDS
CTGCTGGTATTGCATATGCT+AGG 0.566820 tig0021921:+102953 Msa1395260:CDS
GCTTACCGATTCCTTGTTTG+GGG 0.567226 tig0021921:-105533 None:intergenic
TGAACACAAAAGGCACCAGA+TGG 0.567725 tig0021921:-106367 None:intergenic
TAGTATGCCTACAGTACTCT+GGG 0.568899 tig0021921:+106213 Msa1395260:CDS
ATTACTATAGAACTATCGTC+AGG 0.569340 tig0021921:-103243 None:intergenic
TTGAAAACAGCAGCATAACA+AGG 0.569520 tig0021921:-105065 None:intergenic
TTTATCTTTGTGCACCGGGT+AGG 0.573724 tig0021921:+106580 Msa1395260:three_prime_UTR
TTATCACACCGCAAATTCAA+GGG 0.573877 tig0021921:-101543 None:intergenic
AGGTCTGTTATCGAAAATTG+TGG 0.577251 tig0021921:-106400 None:intergenic
GCATTGGGAGAGAAAGAAGA+AGG 0.581405 tig0021921:-101598 None:intergenic
CTGGTATTGCATATGCTAGG+TGG 0.587823 tig0021921:+102956 Msa1395260:CDS
GAACACAAAAGGCACCAGAT+GGG 0.589683 tig0021921:-106366 None:intergenic
AAAATTATGGTAAATATGAA+CGG 0.591977 tig0021921:+106552 Msa1395260:three_prime_UTR
ACCCTTTAGAGTAAGGTATG+AGG 0.592074 tig0021921:+105455 Msa1395260:CDS
TAAGTATGTGACGACTATCT+GGG 0.592440 tig0021921:-102981 None:intergenic
TATCTTTATCTTTGTGCACC+GGG 0.593107 tig0021921:+106576 Msa1395260:three_prime_UTR
CTTAGCTACACTTACCTACC+CGG 0.593162 tig0021921:-106594 None:intergenic
GTTCTAATCTATTCTCCAGA+CGG 0.593469 tig0021921:+104867 Msa1395260:CDS
AAAACAAGGCGAGTGGATGT+CGG 0.593540 tig0021921:-106310 None:intergenic
GTAGCTACCTTGTAATCAAG+TGG 0.593883 tig0021921:-103276 None:intergenic
TAATGCATGAAAAGAGAATG+TGG 0.597472 tig0021921:-106831 None:intergenic
AAACAGGAGAGACACTCTCA+TGG 0.600151 tig0021921:-106658 None:intergenic
GACCTGAAGTGGAATTCTGA+TGG 0.603890 tig0021921:+106418 Msa1395260:CDS
TAGACTTGGCTGATGTCGAA+TGG 0.607385 tig0021921:+103217 Msa1395260:CDS
TTCCATACCCAGAGTACTGT+AGG 0.607984 tig0021921:-106220 None:intergenic
TAATACATGCTCTTACAACA+AGG 0.608608 tig0021921:-106805 None:intergenic
AATTTGCAGCGATTTGCACA+AGG 0.609411 tig0021921:+103118 Msa1395260:CDS
CACTGCCAGAAACTGACCAC+AGG 0.612466 tig0021921:-104955 None:intergenic
GCCAAAGCATGCTTCTAAGG+GGG 0.613203 tig0021921:+103074 Msa1395260:CDS
GAGGATGTACTCAGAATCAA+GGG 0.613958 tig0021921:-102851 None:intergenic
TAATCTATTCTCCAGACGGA+AGG 0.615741 tig0021921:+104871 Msa1395260:CDS
AACACAAAAGGCACCAGATG+GGG 0.616647 tig0021921:-106365 None:intergenic
CTAGCATATGCAATACCAGC+AGG 0.619246 tig0021921:-102952 None:intergenic
GAGAAACCTAACCCCAAACA+AGG 0.622655 tig0021921:+105522 Msa1395260:CDS
AGTTTGGTCACTGGTAAACA+CGG 0.625331 tig0021921:+103032 Msa1395260:CDS
CAGCAGCATAACAAGGGCCA+CGG 0.626787 tig0021921:-105058 None:intergenic
CTGCATCCATATGCAGTCCG+TGG 0.627146 tig0021921:+105041 Msa1395260:CDS
AAACTCTAACAATGATTCGG+TGG 0.638248 tig0021921:+106944 Msa1395260:three_prime_UTR
TGCCAAAGCATGCTTCTAAG+GGG 0.639649 tig0021921:+103073 Msa1395260:CDS
AATACATGCTCTTACAACAA+GGG 0.646132 tig0021921:-106804 None:intergenic
GAAGCACACATTTATACATG+TGG 0.647516 tig0021921:+106341 Msa1395260:CDS
GGTGCAGAAAACAAGGCGAG+TGG 0.648222 tig0021921:-106317 None:intergenic
ACATTAGATCTGAAATGGAA+CGG 0.662707 tig0021921:-101377 None:intergenic
TGAAAACAGCAGCATAACAA+GGG 0.667308 tig0021921:-105064 None:intergenic
TCTGACATATCAAGTTGCAG+AGG 0.678074 tig0021921:-105180 None:intergenic
GGTCACTGACCCAGCCAGAG+TGG 0.681334 tig0021921:+102908 Msa1395260:CDS
TAGGAGTTAAAAGTGTGTCG+TGG 0.691808 tig0021921:+104928 Msa1395260:CDS
ACTGCCAGAAACTGACCACA+GGG 0.692627 tig0021921:-104954 None:intergenic
AAAGAGTGTCACGAATGACG+AGG 0.694631 tig0021921:-101651 None:intergenic
GAGGCGATAATCAACTGCGA+CGG 0.694862 tig0021921:-101632 None:intergenic
TGGACATGCAAGATAGACGA+AGG 0.697728 tig0021921:+102928 Msa1395260:CDS
GCAGAAGGACCCTATCAGAG+TGG 0.712844 tig0021921:+106276 Msa1395260:CDS
GATTCTGAGTACATCCTCTG+CGG 0.720327 tig0021921:+102856 Msa1395260:CDS
TTAGATCTGAAATGGAACGG+TGG 0.734103 tig0021921:-101374 None:intergenic
AGTGTGTCGTGGTCTCCCTG+TGG 0.759227 tig0021921:+104939 Msa1395260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATAATAATGTTGTAAAT+AGG + tig0021921:102000-102019 Msa1395260:intron 15.0%
!! ACAAATACAATAATATATGT+TGG - tig0021921:102586-102605 None:intergenic 15.0%
!! ATATTTGAATTGCTTAAAAT+AGG - tig0021921:103623-103642 None:intergenic 15.0%
!!! ATTTTAAGCAATTCAAATAT+TGG + tig0021921:103623-103642 Msa1395260:intron 15.0%
!!! ATAATTGTTGTGTTTATTTT+AGG - tig0021921:103706-103725 None:intergenic 15.0%
!! TTGAAACTATGTTTAAAAAT+TGG + tig0021921:104292-104311 Msa1395260:intron 15.0%
!!! TTTATTTGATTTAAGCTTTT+TGG + tig0021921:105363-105382 Msa1395260:intron 15.0%
!!! TTTCTAATTTTACATTTTTC+TGG + tig0021921:105853-105872 Msa1395260:intron 15.0%
!! AAAATTATGGTAAATATGAA+CGG + tig0021921:106552-106571 Msa1395260:three_prime_UTR 15.0%
!!! GAAAAGTATATGAAACAAAA+AGG + tig0021921:101349-101368 Msa1395260:five_prime_UTR 20.0%
!! TTAATCATGATTAGTGAAAA+CGG + tig0021921:101463-101482 Msa1395260:five_prime_UTR 20.0%
!! AAAGAATACAAGAATGTATT+TGG + tig0021921:102648-102667 Msa1395260:intron 20.0%
!! ACAAAATTAGCTATATTGAA+TGG + tig0021921:102827-102846 Msa1395260:CDS 20.0%
!! CAAAATTAGCTATATTGAAT+GGG + tig0021921:102828-102847 Msa1395260:CDS 20.0%
!!! TTTTTTTTCCATTCCATTAA+CGG - tig0021921:103449-103468 None:intergenic 20.0%
!! AGTTAAATCTTATATTCCAT+AGG + tig0021921:103561-103580 Msa1395260:intron 20.0%
!! TTTGTTTGGATTATTAGAAA+GGG - tig0021921:103682-103701 None:intergenic 20.0%
!!! TTTTGTTTGGATTATTAGAA+AGG - tig0021921:103683-103702 None:intergenic 20.0%
!!! TGTTTATTTTAGGTTTTGTT+TGG - tig0021921:103696-103715 None:intergenic 20.0%
!!! TTTTAAACATAGTTTCAAAG+TGG - tig0021921:104290-104309 None:intergenic 20.0%
!! AAAGAAAAATATGAAAACGA+AGG - tig0021921:105412-105431 None:intergenic 20.0%
!! TTAGTTAAAAGAAACTGATA+TGG - tig0021921:106029-106048 None:intergenic 20.0%
!! AAGTGAGTAAAACAAAATTA+TGG + tig0021921:106539-106558 Msa1395260:three_prime_UTR 20.0%
!!! TTACATTCTTATTTCTGATA+AGG - tig0021921:106857-106876 None:intergenic 20.0%
! GAATTTGATAAAATTCTGTG+TGG + tig0021921:101701-101720 Msa1395260:intron 25.0%
! AAAAATTGAATCCCATTAGT+GGG - tig0021921:101838-101857 None:intergenic 25.0%
! ATTATACAACTAACTTCATG+TGG - tig0021921:101988-102007 None:intergenic 25.0%
! CTAAAATCATTGGAAATAGA+TGG + tig0021921:102074-102093 Msa1395260:intron 25.0%
! TTATATCCCAAAAATTTACC+CGG - tig0021921:102412-102431 None:intergenic 25.0%
!! TTCTTTTATGTGAACTTATC+AGG - tig0021921:102634-102653 None:intergenic 25.0%
!! AAATTTTCCATCTCTTGTAA+AGG - tig0021921:103103-103122 None:intergenic 25.0%
! GACAAGATAACAGATTTATA+TGG - tig0021921:103158-103177 None:intergenic 25.0%
!! ACGATAGTTCTATAGTAATA+TGG + tig0021921:103247-103266 Msa1395260:CDS 25.0%
!! CGATAGTTCTATAGTAATAT+GGG + tig0021921:103248-103267 Msa1395260:CDS 25.0%
! AGGAAAGAAAAATAGGAATT+AGG - tig0021921:103308-103327 None:intergenic 25.0%
!! TTAACTAGTCTGTGAATTTA+AGG + tig0021921:103388-103407 Msa1395260:intron 25.0%
! AAAAATAGCATACAGTTGTT+TGG + tig0021921:103465-103484 Msa1395260:intron 25.0%
! TTGCTTAAAATAGGATAGAA+TGG - tig0021921:103614-103633 None:intergenic 25.0%
! GTAGTAAGTGTTTGTTTAAT+AGG - tig0021921:103741-103760 None:intergenic 25.0%
! TCACACAATTGAAAACAATT+AGG + tig0021921:103854-103873 Msa1395260:intron 25.0%
!!! CATAGACTTTGATTTTGATT+TGG - tig0021921:103897-103916 None:intergenic 25.0%
! GGCTTAAAAAAAAGGATATT+TGG - tig0021921:104041-104060 None:intergenic 25.0%
! ATATCAATGTACAATAGACA+TGG + tig0021921:104163-104182 Msa1395260:intron 25.0%
! AATTGGAGATGAAAAATAGT+TGG + tig0021921:104309-104328 Msa1395260:intron 25.0%
! ATAGGAATGTCATAATAAGT+TGG + tig0021921:104362-104381 Msa1395260:intron 25.0%
! AAGCTTTACATGATTGTTAA+GGG - tig0021921:104550-104569 None:intergenic 25.0%
! TAAGCTTTACATGATTGTTA+AGG - tig0021921:104551-104570 None:intergenic 25.0%
! TATAGAGAATGTTTCATGAA+TGG + tig0021921:104689-104708 Msa1395260:intron 25.0%
! GTATAAAACAAAAACGACTA+AGG - tig0021921:104843-104862 None:intergenic 25.0%
!!! GTCGTTTTTGTTTTATACTT+AGG + tig0021921:104845-104864 Msa1395260:intron 25.0%
!! TTTGACACTTTTATTGTTGA+TGG + tig0021921:105098-105117 Msa1395260:intron 25.0%
! AAAAGTTTCACATGTATTGT+TGG + tig0021921:105310-105329 Msa1395260:intron 25.0%
!!! TTCTGAAATGGTAAATTGAT+TGG - tig0021921:105492-105511 None:intergenic 25.0%
! TCTTAATTCCATTATTTGCA+TGG + tig0021921:105630-105649 Msa1395260:intron 25.0%
! AGAAACTGAATTATTTCATG+TGG + tig0021921:105662-105681 Msa1395260:intron 25.0%
!!! TTCATGTGGATATTTTTTTC+TGG + tig0021921:105676-105695 Msa1395260:intron 25.0%
!!! TTTCTGGTCAATTTGATTTT+TGG + tig0021921:105692-105711 Msa1395260:intron 25.0%
! AAAGGATATATCGGTATTAA+GGG - tig0021921:105779-105798 None:intergenic 25.0%
! CTAAACATGAAAGGATATAT+CGG - tig0021921:105788-105807 None:intergenic 25.0%
! TAACAATATCATTGGAGATA+AGG - tig0021921:105817-105836 None:intergenic 25.0%
! GAATCACATAACAATATCAT+TGG - tig0021921:105825-105844 None:intergenic 25.0%
! TGCAACAAAGAAAGAATATA+TGG - tig0021921:105902-105921 None:intergenic 25.0%
!! ATTCTTTATTGATGATACCT+TGG + tig0021921:105967-105986 Msa1395260:intron 25.0%
!!! CAAGAAAAATCAGTTTTGTT+AGG - tig0021921:106141-106160 None:intergenic 25.0%
! GAATTTGAATTTACAACTGA+AGG - tig0021921:106639-106658 None:intergenic 25.0%
! CCTATTAAAAATGAACTCAT+AGG - tig0021921:106699-106718 None:intergenic 25.0%
!!! CCTATGAGTTCATTTTTAAT+AGG + tig0021921:106696-106715 Msa1395260:three_prime_UTR 25.0%
! TTGTGATGACATTAATTCTA+AGG + tig0021921:106883-106902 Msa1395260:three_prime_UTR 25.0%
! ACATTAGATCTGAAATGGAA+CGG - tig0021921:101380-101399 None:intergenic 30.0%
CACTGAATGTTACAAACAAA+CGG + tig0021921:101573-101592 Msa1395260:CDS 30.0%
ACTGAATGTTACAAACAAAC+GGG + tig0021921:101574-101593 Msa1395260:CDS 30.0%
TTTGATAAAATTCTGTGTGG+TGG + tig0021921:101704-101723 Msa1395260:intron 30.0%
! TTTTTCCATTTCCATCCAAA+AGG - tig0021921:101797-101816 None:intergenic 30.0%
AAAATTGAATCCCATTAGTG+GGG - tig0021921:101837-101856 None:intergenic 30.0%
CAAAAATTGAATCCCATTAG+TGG - tig0021921:101839-101858 None:intergenic 30.0%
! AAACATGAAGCTGATGTTTT+AGG + tig0021921:101924-101943 Msa1395260:intron 30.0%
AATGGAGACACTAAAATCAT+TGG + tig0021921:102064-102083 Msa1395260:intron 30.0%
! ATTGGAAATAGATGGATTTG+CGG + tig0021921:102082-102101 Msa1395260:intron 30.0%
AACTTCTTATTGTAGCATGT+TGG - tig0021921:102170-102189 None:intergenic 30.0%
AAAATACCGAGCTTGAAATA+TGG + tig0021921:102284-102303 Msa1395260:intron 30.0%
! TGAATACCGGGTAAATTTTT+GGG + tig0021921:102403-102422 Msa1395260:intron 30.0%
AGTGCCTGTTGAAATTTAAA+TGG + tig0021921:102452-102471 Msa1395260:intron 30.0%
! GTTGCCATTTAAATTTCAAC+AGG - tig0021921:102459-102478 None:intergenic 30.0%
AATCGAAAAATGAGCTGAAA+AGG - tig0021921:102508-102527 None:intergenic 30.0%
! TATTTGGAACTTTAGTGTCT+AGG + tig0021921:102664-102683 Msa1395260:intron 30.0%
CCAAGTATATAATTCACCTA+TGG - tig0021921:102699-102718 None:intergenic 30.0%
CCATAGGTGAATTATATACT+TGG + tig0021921:102696-102715 Msa1395260:intron 30.0%
! AATATTTGGAATCTCTCAGA+TGG - tig0021921:102737-102756 None:intergenic 30.0%
AGATTCCAAATATTTGCTTC+TGG + tig0021921:102743-102762 Msa1395260:intron 30.0%
ACAAACCAGAAGCAAATATT+TGG - tig0021921:102751-102770 None:intergenic 30.0%
!! AAATATTTGCTTCTGGTTTG+TGG + tig0021921:102750-102769 Msa1395260:intron 30.0%
CTATAAAAAGCCAATGATAC+AGG + tig0021921:102882-102901 Msa1395260:CDS 30.0%
ATCTGTTATCTTGTCATTCA+TGG + tig0021921:103163-103182 Msa1395260:CDS 30.0%
TCTGTTATCTTGTCATTCAT+GGG + tig0021921:103164-103183 Msa1395260:CDS 30.0%
TTGTCATTCATGGGAAATAA+TGG + tig0021921:103173-103192 Msa1395260:CDS 30.0%
TGTCATTCATGGGAAATAAT+GGG + tig0021921:103174-103193 Msa1395260:CDS 30.0%
ATTACTATAGAACTATCGTC+AGG - tig0021921:103246-103265 None:intergenic 30.0%
GGTTTGAATTGAGATAGAAT+GGG - tig0021921:103428-103447 None:intergenic 30.0%
ATCTCAATTCAAACCGTTAA+TGG + tig0021921:103433-103452 Msa1395260:intron 30.0%
AATTCAAACCGTTAATGGAA+TGG + tig0021921:103438-103457 Msa1395260:intron 30.0%
ACAGTTGTTTGGACAATTTA+TGG + tig0021921:103476-103495 Msa1395260:intron 30.0%
GGGAATATATTCTATACCTA+TGG - tig0021921:103580-103599 None:intergenic 30.0%
AACAACAATGTATACACACT+AGG - tig0021921:103792-103811 None:intergenic 30.0%
! TTGTTTTCAATTGTGTGACA+TGG - tig0021921:103852-103871 None:intergenic 30.0%
CACAATTGAAAACAATTAGG+CGG + tig0021921:103857-103876 Msa1395260:intron 30.0%
!!! AGACTTTGATTTTGATTTGG+TGG - tig0021921:103894-103913 None:intergenic 30.0%
TCAAATTCAAACACCTCTAA+AGG + tig0021921:103918-103937 Msa1395260:intron 30.0%
! TTGTTATTGTTCTTGCATCT+AGG - tig0021921:103961-103980 None:intergenic 30.0%
TATCAAATAGCTGACATTGT+AGG - tig0021921:104146-104165 None:intergenic 30.0%
GTATATCACCCATAATGTTT+GGG + tig0021921:104497-104516 Msa1395260:intron 30.0%
AAGGGTCTAGAAAACTAATA+AGG - tig0021921:104532-104551 None:intergenic 30.0%
!!! TCCTGTTTTTTTTAGACTGA+TGG + tig0021921:104779-104798 Msa1395260:intron 30.0%
ACCATCAGTCTAAAAAAAAC+AGG - tig0021921:104783-104802 None:intergenic 30.0%
AAGTATCAAGCATATGAAAG+TGG + tig0021921:104903-104922 Msa1395260:CDS 30.0%
TCTTCCAAGTTAAATGATTC+AGG - tig0021921:105007-105026 None:intergenic 30.0%
! GATTTTTCTCAAGGAAACAA+TGG + tig0021921:105219-105238 Msa1395260:CDS 30.0%
! ATTTAAGCTTTTTGGACAGT+TGG + tig0021921:105371-105390 Msa1395260:intron 30.0%
! TTGAAGCATTCAAAAGTTAG+AGG - tig0021921:105566-105585 None:intergenic 30.0%
! AATAATGGAATTAAGAACCC+TGG - tig0021921:105626-105645 None:intergenic 30.0%
CCTATTTACCATGCAAATAA+TGG - tig0021921:105641-105660 None:intergenic 30.0%
CCATTATTTGCATGGTAAAT+AGG + tig0021921:105638-105657 Msa1395260:intron 30.0%
GAAAGGATATATCGGTATTA+AGG - tig0021921:105780-105799 None:intergenic 30.0%
GATATTGTTATGTGATTCAC+TGG + tig0021921:105827-105846 Msa1395260:intron 30.0%
TTCCAAGTTATTATGTCCTT+TGG + tig0021921:105923-105942 Msa1395260:intron 30.0%
ATCCAAAGGACATAATAACT+TGG - tig0021921:105928-105947 None:intergenic 30.0%
GAACTAAAGAATCAATCCAA+AGG - tig0021921:105942-105961 None:intergenic 30.0%
!!! AAAAATCAGTTTTGTTAGGC+GGG - tig0021921:106137-106156 None:intergenic 30.0%
!!! GAAAAATCAGTTTTGTTAGG+CGG - tig0021921:106138-106157 None:intergenic 30.0%
!! ACAAAACTGATTTTTCTTGC+AGG + tig0021921:106142-106161 Msa1395260:intron 30.0%
! AAACCTTTCGTTTTGCATTT+GGG + tig0021921:106759-106778 Msa1395260:three_prime_UTR 30.0%
TGCATTTGGGAAAATTCAAA+AGG + tig0021921:106772-106791 Msa1395260:three_prime_UTR 30.0%
AATACATGCTCTTACAACAA+GGG - tig0021921:106807-106826 None:intergenic 30.0%
TAATACATGCTCTTACAACA+AGG - tig0021921:106808-106827 None:intergenic 30.0%
TAATGCATGAAAAGAGAATG+TGG - tig0021921:106834-106853 None:intergenic 30.0%
TCCAAACTCTAACAATGATT+CGG + tig0021921:106941-106960 Msa1395260:three_prime_UTR 30.0%
GACAGACATTAGATCTGAAA+TGG - tig0021921:101385-101404 None:intergenic 35.0%
ATCTAATGTCTGTCTTCACT+TGG + tig0021921:101391-101410 Msa1395260:five_prime_UTR 35.0%
AAACGAAACCCTTGAATTTG+CGG + tig0021921:101535-101554 Msa1395260:five_prime_UTR 35.0%
TTATCACACCGCAAATTCAA+GGG - tig0021921:101546-101565 None:intergenic 35.0%
ATTATCACACCGCAAATTCA+AGG - tig0021921:101547-101566 None:intergenic 35.0%
TTGAATTTGCGGTGTGATAA+TGG + tig0021921:101546-101565 Msa1395260:exon 35.0%
GGATCCCTTAAATAAAGTCT+CGG + tig0021921:101764-101783 Msa1395260:intron 35.0%
GATCCCTTAAATAAAGTCTC+GGG + tig0021921:101765-101784 Msa1395260:intron 35.0%
! GTACCCGAGACTTTATTTAA+GGG - tig0021921:101771-101790 None:intergenic 35.0%
TGGATGGAAATGGAAAAATG+TGG + tig0021921:101799-101818 Msa1395260:intron 35.0%
TCAGTTCTTGTAAGATGTGA+TGG + tig0021921:101951-101970 Msa1395260:intron 35.0%
TAAGCGAGTCTTCCAAAATT+TGG + tig0021921:102034-102053 Msa1395260:intron 35.0%
AAGCGAGTCTTCCAAAATTT+GGG + tig0021921:102035-102054 Msa1395260:intron 35.0%
! GTCTTCCAAAATTTGGGTTT+AGG + tig0021921:102041-102060 Msa1395260:intron 35.0%
! CCATTCCTAAACCCAAATTT+TGG - tig0021921:102049-102068 None:intergenic 35.0%
! CCAAAATTTGGGTTTAGGAA+TGG + tig0021921:102046-102065 Msa1395260:intron 35.0%
CATGTTGGATTTCAGATTTG+AGG - tig0021921:102155-102174 None:intergenic 35.0%
! TGTGTTTGTTGGATCAAGAT+TGG - tig0021921:102315-102334 None:intergenic 35.0%
! CTGAATACCGGGTAAATTTT+TGG + tig0021921:102402-102421 Msa1395260:intron 35.0%
! TGTGCAATTGTTTTCATGCT+TGG + tig0021921:102804-102823 Msa1395260:CDS 35.0%
TAAGTATGTGACGACTATCT+GGG - tig0021921:102984-103003 None:intergenic 35.0%
TTCAGTTGCGTTTAACAGTT+TGG + tig0021921:103016-103035 Msa1395260:CDS 35.0%
! CACAGACTAGTTAAATTCAG+TGG - tig0021921:103382-103401 None:intergenic 35.0%
CGGTTTGAATTGAGATAGAA+TGG - tig0021921:103429-103448 None:intergenic 35.0%
TCATACCATTGTTTGAGAAG+TGG + tig0021921:103517-103536 Msa1395260:intron 35.0%
TTCAACCACTTCTCAAACAA+TGG - tig0021921:103525-103544 None:intergenic 35.0%
TGTTTGAGAAGTGGTTGAAA+TGG + tig0021921:103526-103545 Msa1395260:intron 35.0%
AGAATATATTCCCTTACCTC+AGG + tig0021921:103587-103606 Msa1395260:intron 35.0%
TTGTTTCCTTCCTACAAGAT+TGG + tig0021921:103807-103826 Msa1395260:intron 35.0%
! ACACCTCTAAAGGAAATGTT+AGG + tig0021921:103928-103947 Msa1395260:intron 35.0%
! CACCTCTAAAGGAAATGTTA+GGG + tig0021921:103929-103948 Msa1395260:intron 35.0%
! ATTGTTCTTGCATCTAGGAT+TGG - tig0021921:103956-103975 None:intergenic 35.0%
TGTACACCATACGTAATTGA+TGG - tig0021921:104007-104026 None:intergenic 35.0%
GAAATGGGGGCTTAAAAAAA+AGG - tig0021921:104049-104068 None:intergenic 35.0%
TAGAGTCTTACAAGGGAAAT+GGG - tig0021921:104064-104083 None:intergenic 35.0%
ATAGAGTCTTACAAGGGAAA+TGG - tig0021921:104065-104084 None:intergenic 35.0%
ATTTCCCTTGTAAGACTCTA+TGG + tig0021921:104064-104083 Msa1395260:intron 35.0%
GAAGAGCAAAATAGAGAGAT+GGG + tig0021921:104331-104350 Msa1395260:intron 35.0%
AAGAGCAAAATAGAGAGATG+GGG + tig0021921:104332-104351 Msa1395260:intron 35.0%
!! CCAGTAATTTCGAGTTTGAT+TGG - tig0021921:104449-104468 None:intergenic 35.0%
CCAATCAAACTCGAAATTAC+TGG + tig0021921:104446-104465 Msa1395260:intron 35.0%
GTGATATACCAGTAAGTAAC+TGG - tig0021921:104486-104505 None:intergenic 35.0%
GGTATATCACCCATAATGTT+TGG + tig0021921:104496-104515 Msa1395260:intron 35.0%
TCTGTTGACCCAAACATTAT+GGG - tig0021921:104508-104527 None:intergenic 35.0%
ATCTGTTGACCCAAACATTA+TGG - tig0021921:104509-104528 None:intergenic 35.0%
GTTCTAATCTATTCTCCAGA+CGG + tig0021921:104867-104886 Msa1395260:CDS 35.0%
! CAAGCATATGAAAGTGGATT+AGG + tig0021921:104909-104928 Msa1395260:CDS 35.0%
GAGTCCTGAATCATTTAACT+TGG + tig0021921:105000-105019 Msa1395260:CDS 35.0%
TGAAAACAGCAGCATAACAA+GGG - tig0021921:105067-105086 None:intergenic 35.0%
TTGAAAACAGCAGCATAACA+AGG - tig0021921:105068-105087 None:intergenic 35.0%
! TTGAGCGATGATTTTTCTCA+AGG + tig0021921:105210-105229 Msa1395260:CDS 35.0%
AAACGAAGGAATGTGTTTCA+TGG - tig0021921:105398-105417 None:intergenic 35.0%
ACCTCATACCTTACTCTAAA+GGG - tig0021921:105459-105478 None:intergenic 35.0%
TTGCATTATGTAGCAAGGAA+GGG - tig0021921:105595-105614 None:intergenic 35.0%
ATTGCATTATGTAGCAAGGA+AGG - tig0021921:105596-105615 None:intergenic 35.0%
GATCATTGCATTATGTAGCA+AGG - tig0021921:105600-105619 None:intergenic 35.0%
ATAATGCAATGATCACTCCA+GGG + tig0021921:105606-105625 Msa1395260:intron 35.0%
AGGTTTACGCTAAACATGAA+AGG - tig0021921:105797-105816 None:intergenic 35.0%
AAAGTGTATTGCAGAAACCA+AGG - tig0021921:105987-106006 None:intergenic 35.0%
GTTTCTGCAATACACTTTGA+TGG + tig0021921:105989-106008 Msa1395260:intron 35.0%
CCAAATGATTCAGTTTGTCT+AGG - tig0021921:106058-106077 None:intergenic 35.0%
CCTAGACAAACTGAATCATT+TGG + tig0021921:106055-106074 Msa1395260:intron 35.0%
!!! TTCTTGCAGGTTTTTTGTCA+TGG + tig0021921:106155-106174 Msa1395260:intron 35.0%
CATTGCGAGTACATATGTAT+TGG - tig0021921:106192-106211 None:intergenic 35.0%
CATGTATAAATGTGTGCTTC+CGG - tig0021921:106341-106360 None:intergenic 35.0%
GAAGCACACATTTATACATG+TGG + tig0021921:106341-106360 Msa1395260:CDS 35.0%
TAGAGGAACATGAACACAAA+AGG - tig0021921:106380-106399 None:intergenic 35.0%
GTTATCGAAAATTGTGGTAG+AGG - tig0021921:106397-106416 None:intergenic 35.0%
AGGTCTGTTATCGAAAATTG+TGG - tig0021921:106403-106422 None:intergenic 35.0%
TTGTCTGCTTCTTAAGGATA+AGG + tig0021921:106444-106463 Msa1395260:CDS 35.0%
TCACTAGATTCTGGCAATAA+GGG - tig0021921:106493-106512 None:intergenic 35.0%
TTCACTAGATTCTGGCAATA+AGG - tig0021921:106494-106513 None:intergenic 35.0%
GAGCTATATTCACTAGATTC+TGG - tig0021921:106502-106521 None:intergenic 35.0%
CTATCTTTATCTTTGTGCAC+CGG + tig0021921:106575-106594 Msa1395260:three_prime_UTR 35.0%
TATCTTTATCTTTGTGCACC+GGG + tig0021921:106576-106595 Msa1395260:three_prime_UTR 35.0%
! GAAACCTTTCGTTTTGCATT+TGG + tig0021921:106758-106777 Msa1395260:three_prime_UTR 35.0%
TTTCCCAAATGCAAAACGAA+AGG - tig0021921:106765-106784 None:intergenic 35.0%
ACCGAATCATTGTTAGAGTT+TGG - tig0021921:106945-106964 None:intergenic 35.0%
! AAACTCTAACAATGATTCGG+TGG + tig0021921:106944-106963 Msa1395260:three_prime_UTR 35.0%
! TTAGATCTGAAATGGAACGG+TGG - tig0021921:101377-101396 None:intergenic 40.0%
TAATGTGAGTGAGTGCAGTT+TGG - tig0021921:101446-101465 None:intergenic 40.0%
TCGTGACACTCTTTCTTTCA+AGG + tig0021921:101660-101679 Msa1395260:CDS 40.0%
! CGTACCCGAGACTTTATTTA+AGG - tig0021921:101772-101791 None:intergenic 40.0%
TACCGAGCTTGAAATATGGA+TGG + tig0021921:102288-102307 Msa1395260:intron 40.0%
GACCATCCATATTTCAAGCT+CGG - tig0021921:102293-102312 None:intergenic 40.0%
TGTGTCAAATTGTCAACTGC+AGG + tig0021921:102354-102373 Msa1395260:intron 40.0%
GTCTAGGTTTAATGTGCCAT+AGG + tig0021921:102680-102699 Msa1395260:intron 40.0%
AACAATTGCACAACCTGCAT+AGG - tig0021921:102796-102815 None:intergenic 40.0%
GAGGATGTACTCAGAATCAA+GGG - tig0021921:102854-102873 None:intergenic 40.0%
AGAGGATGTACTCAGAATCA+AGG - tig0021921:102855-102874 None:intergenic 40.0%
AAAAGCCAATGATACAGGCT+TGG + tig0021921:102887-102906 Msa1395260:CDS 40.0%
GTAAGTATGTGACGACTATC+TGG - tig0021921:102985-103004 None:intergenic 40.0%
AGTTTGGTCACTGGTAAACA+CGG + tig0021921:103032-103051 Msa1395260:CDS 40.0%
TTGCCAAAGCATGCTTCTAA+GGG + tig0021921:103072-103091 Msa1395260:CDS 40.0%
AATTTGCAGCGATTTGCACA+AGG + tig0021921:103118-103137 Msa1395260:CDS 40.0%
GGATTCACCACTTGATTACA+AGG + tig0021921:103269-103288 Msa1395260:CDS 40.0%
GTAGCTACCTTGTAATCAAG+TGG - tig0021921:103279-103298 None:intergenic 40.0%
GAGGGCTAGGAAAGAAAAAT+AGG - tig0021921:103315-103334 None:intergenic 40.0%
TTATGTTTACCAAGTCTCCC+AGG - tig0021921:103342-103361 None:intergenic 40.0%
ATAGAATGGACCTGAGGTAA+GGG - tig0021921:103600-103619 None:intergenic 40.0%
AATAGGATAGAATGGACCTG+AGG - tig0021921:103606-103625 None:intergenic 40.0%
GACCCTAACATTTCCTTTAG+AGG - tig0021921:103934-103953 None:intergenic 40.0%
TTACGTATGGTGTACACCTT+TGG + tig0021921:104011-104030 Msa1395260:intron 40.0%
TACGTATGGTGTACACCTTT+GGG + tig0021921:104012-104031 Msa1395260:intron 40.0%
AGAGTCTTACAAGGGAAATG+GGG - tig0021921:104063-104082 None:intergenic 40.0%
TGAGCCATAGAGTCTTACAA+GGG - tig0021921:104071-104090 None:intergenic 40.0%
TTGAGCCATAGAGTCTTACA+AGG - tig0021921:104072-104091 None:intergenic 40.0%
! CCTTGATGGCAAATATGTGA+AGG - tig0021921:104099-104118 None:intergenic 40.0%
CCTTCACATATTTGCCATCA+AGG + tig0021921:104096-104115 Msa1395260:intron 40.0%
CACATATTTGCCATCAAGGT+TGG + tig0021921:104100-104119 Msa1395260:intron 40.0%
!!! GGATTTTTTGCCAACCTTGA+TGG - tig0021921:104113-104132 None:intergenic 40.0%
! TCCTCTCTTTCGAGTAACAA+CGG - tig0021921:104216-104235 None:intergenic 40.0%
AGAGGATACAATCAACTCAG+TGG + tig0021921:104230-104249 Msa1395260:intron 40.0%
GGAAGAGCAAAATAGAGAGA+TGG + tig0021921:104330-104349 Msa1395260:intron 40.0%
ATGAATGACCAATAGAGGAG+AGG - tig0021921:104422-104441 None:intergenic 40.0%
GAGAGATGAATGACCAATAG+AGG - tig0021921:104427-104446 None:intergenic 40.0%
ACGTTGAACCAGTTACTTAC+TGG + tig0021921:104475-104494 Msa1395260:intron 40.0%
TAATCTATTCTCCAGACGGA+AGG + tig0021921:104871-104890 Msa1395260:CDS 40.0%
! TAGGAGTTAAAAGTGTGTCG+TGG + tig0021921:104928-104947 Msa1395260:CDS 40.0%
ATCCACTTCCTGCAATTTCA+GGG - tig0021921:105157-105176 None:intergenic 40.0%
! TCTGACATATCAAGTTGCAG+AGG - tig0021921:105183-105202 None:intergenic 40.0%
!! AAACTTTTTCCTGCCAAGAC+GGG - tig0021921:105298-105317 None:intergenic 40.0%
!! GAAACTTTTTCCTGCCAAGA+CGG - tig0021921:105299-105318 None:intergenic 40.0%
!! ACCCTTTAGAGTAAGGTATG+AGG + tig0021921:105455-105474 Msa1395260:CDS 40.0%
GACCTCATACCTTACTCTAA+AGG - tig0021921:105460-105479 None:intergenic 40.0%
TAGAGTAAGGTATGAGGTCA+TGG + tig0021921:105461-105480 Msa1395260:CDS 40.0%
!! AGCTTACCGATTCCTTGTTT+GGG - tig0021921:105537-105556 None:intergenic 40.0%
CATAATGCAATGATCACTCC+AGG + tig0021921:105605-105624 Msa1395260:intron 40.0%
! AAGGCTTTGATTAAGTCCAG+AGG - tig0021921:106084-106103 None:intergenic 40.0%
ATAGTATGCCTACAGTACTC+TGG + tig0021921:106212-106231 Msa1395260:CDS 40.0%
TAGTATGCCTACAGTACTCT+GGG + tig0021921:106213-106232 Msa1395260:CDS 40.0%
TACAGCAATCTTAGTGCAGA+AGG + tig0021921:106261-106280 Msa1395260:CDS 40.0%
TTTCGATAACAGACCTGAAG+TGG + tig0021921:106407-106426 Msa1395260:CDS 40.0%
TGCAAAACGAAAGGTTTCAC+TGG - tig0021921:106756-106775 None:intergenic 40.0%
GCATTGGGAGAGAAAGAAGA+AGG - tig0021921:101601-101620 None:intergenic 45.0%
ACGGCTAAGAAACGAGCATT+GGG - tig0021921:101616-101635 None:intergenic 45.0%
!! AAAGAGTGTCACGAATGACG+AGG - tig0021921:101654-101673 None:intergenic 45.0%
GATCTGAGTGAAACTTGACG+CGG + tig0021921:101743-101762 Msa1395260:intron 45.0%
! ACGAGCCTTTTGGATGGAAA+TGG + tig0021921:101789-101808 Msa1395260:intron 45.0%
TGAAAGAGCAACCCCACTAA+TGG + tig0021921:101823-101842 Msa1395260:intron 45.0%
GAAAGAGCAACCCCACTAAT+GGG + tig0021921:101824-101843 Msa1395260:intron 45.0%
TGGATTTGCGGCAATACTTG+TGG + tig0021921:102094-102113 Msa1395260:intron 45.0%
GTCAGCACATCTGTGTTTGT+TGG - tig0021921:102326-102345 None:intergenic 45.0%
TTGTCAACTGCAGGCAATCT+TGG + tig0021921:102363-102382 Msa1395260:intron 45.0%
!! TGGTCAGCAGTTCTGAATAC+CGG + tig0021921:102390-102409 Msa1395260:intron 45.0%
TCATTCTTTCCGTCCTATGC+AGG + tig0021921:102780-102799 Msa1395260:intron 45.0%
ATTGCACAACCTGCATAGGA+CGG - tig0021921:102792-102811 None:intergenic 45.0%
GATTCTGAGTACATCCTCTG+CGG + tig0021921:102856-102875 Msa1395260:CDS 45.0%
! GCTTTTTATAGAGACCGCAG+AGG - tig0021921:102873-102892 None:intergenic 45.0%
AGTGACCAAGCCTGTATCAT+TGG - tig0021921:102895-102914 None:intergenic 45.0%
TCTATCTTGCATGTCCACTC+TGG - tig0021921:102925-102944 None:intergenic 45.0%
TGGACATGCAAGATAGACGA+AGG + tig0021921:102928-102947 Msa1395260:CDS 45.0%
CTAGCATATGCAATACCAGC+AGG - tig0021921:102955-102974 None:intergenic 45.0%
CTGCTGGTATTGCATATGCT+AGG + tig0021921:102953-102972 Msa1395260:CDS 45.0%
CTGGTATTGCATATGCTAGG+TGG + tig0021921:102956-102975 Msa1395260:CDS 45.0%
GCGTTTAACAGTTTGGTCAC+TGG + tig0021921:103023-103042 Msa1395260:CDS 45.0%
GTTGCCAAAGCATGCTTCTA+AGG + tig0021921:103071-103090 Msa1395260:CDS 45.0%
TGCCAAAGCATGCTTCTAAG+GGG + tig0021921:103073-103092 Msa1395260:CDS 45.0%
GGGGTTTCCTTTACAAGAGA+TGG + tig0021921:103093-103112 Msa1395260:CDS 45.0%
TGCTGTTGACACTCTAGACT+TGG + tig0021921:103203-103222 Msa1395260:CDS 45.0%
TAGACTTGGCTGATGTCGAA+TGG + tig0021921:103217-103236 Msa1395260:CDS 45.0%
TTTCCTAGCCCTCTTAACCT+GGG + tig0021921:103322-103341 Msa1395260:intron 45.0%
GATAGAATGGACCTGAGGTA+AGG - tig0021921:103601-103620 None:intergenic 45.0%
! GCAGATACGAGCTTTTAGTG+AGG - tig0021921:103770-103789 None:intergenic 45.0%
TCCTTCCTACAAGATTGGAC+CGG + tig0021921:103812-103831 Msa1395260:intron 45.0%
GTGACATGGTAAGTTGCCAT+TGG - tig0021921:103838-103857 None:intergenic 45.0%
GCAGTGCCATCAATTACGTA+TGG + tig0021921:103998-104017 Msa1395260:intron 45.0%
AAGGATATTTGGCCTCCCAA+AGG - tig0021921:104030-104049 None:intergenic 45.0%
GAGTCTTACAAGGGAAATGG+GGG - tig0021921:104062-104081 None:intergenic 45.0%
GACATTGTAGGTTGCAGTGA+CGG - tig0021921:104134-104153 None:intergenic 45.0%
ACCGTTGTTACTCGAAAGAG+AGG + tig0021921:104212-104231 Msa1395260:intron 45.0%
GAGAGATGGGGAGATAGTAT+AGG + tig0021921:104344-104363 Msa1395260:intron 45.0%
CTCATAGTCCTCTCCTCTAT+TGG + tig0021921:104411-104430 Msa1395260:intron 45.0%
AGCTTCACTGAGCTATGATC+AGG + tig0021921:104571-104590 Msa1395260:intron 45.0%
GCTTCACTGAGCTATGATCA+GGG + tig0021921:104572-104591 Msa1395260:intron 45.0%
CTTCACTGAGCTATGATCAG+GGG + tig0021921:104573-104592 Msa1395260:intron 45.0%
TCAACGGACATGAGAGTCAA+TGG + tig0021921:104604-104623 Msa1395260:intron 45.0%
GACATGAGAGTCAATGGACA+GGG + tig0021921:104610-104629 Msa1395260:intron 45.0%
ACATGAGAGTCAATGGACAG+GGG + tig0021921:104611-104630 Msa1395260:intron 45.0%
TTGAAAAGACACCTTCCGTC+TGG - tig0021921:104885-104904 None:intergenic 45.0%
TACCATGTCCCTGAAATTGC+AGG + tig0021921:105146-105165 Msa1395260:intron 45.0%
TTCCTGCAATTTCAGGGACA+TGG - tig0021921:105151-105170 None:intergenic 45.0%
CATCCACTTCCTGCAATTTC+AGG - tig0021921:105158-105177 None:intergenic 45.0%
! CTTACTCTAAAGGGTCGTTC+TGG - tig0021921:105450-105469 None:intergenic 45.0%
!! CAGAACGACCCTTTAGAGTA+AGG + tig0021921:105448-105467 Msa1395260:CDS 45.0%
GAGAAACCTAACCCCAAACA+AGG + tig0021921:105522-105541 Msa1395260:CDS 45.0%
CCTAACCCCAAACAAGGAAT+CGG + tig0021921:105528-105547 Msa1395260:CDS 45.0%
!! GCTTACCGATTCCTTGTTTG+GGG - tig0021921:105536-105555 None:intergenic 45.0%
!! CAGCTTACCGATTCCTTGTT+TGG - tig0021921:105538-105557 None:intergenic 45.0%
AGCATGAGATAGAGCAGATC+TGG + tig0021921:105729-105748 Msa1395260:intron 45.0%
CTGAATCATTTGGTTGCCTC+TGG + tig0021921:106065-106084 Msa1395260:intron 45.0%
!! TTCCATACCCAGAGTACTGT+AGG - tig0021921:106223-106242 None:intergenic 45.0%
AAAACAAGGCGAGTGGATGT+CGG - tig0021921:106313-106332 None:intergenic 45.0%
TTATACATGTGGACCCCATC+TGG + tig0021921:106352-106371 Msa1395260:CDS 45.0%
!! AACACAAAAGGCACCAGATG+GGG - tig0021921:106368-106387 None:intergenic 45.0%
!! GAACACAAAAGGCACCAGAT+GGG - tig0021921:106369-106388 None:intergenic 45.0%
!! TGAACACAAAAGGCACCAGA+TGG - tig0021921:106370-106389 None:intergenic 45.0%
GACCTGAAGTGGAATTCTGA+TGG + tig0021921:106418-106437 Msa1395260:CDS 45.0%
TGCCATCAGAATTCCACTTC+AGG - tig0021921:106423-106442 None:intergenic 45.0%
TGGCAGTTGTCTGCTTCTTA+AGG + tig0021921:106438-106457 Msa1395260:CDS 45.0%
TTTATCTTTGTGCACCGGGT+AGG + tig0021921:106580-106599 Msa1395260:three_prime_UTR 45.0%
CTTAGCTACACTTACCTACC+CGG - tig0021921:106597-106616 None:intergenic 45.0%
AAACAGGAGAGACACTCTCA+TGG - tig0021921:106661-106680 None:intergenic 45.0%
! AGAGTGTCTCTCCTGTTTGT+TGG + tig0021921:106663-106682 Msa1395260:three_prime_UTR 45.0%
GAGTGTCTCTCCTGTTTGTT+GGG + tig0021921:106664-106683 Msa1395260:three_prime_UTR 45.0%
GCATATCCTACCCAACAAAC+AGG - tig0021921:106677-106696 None:intergenic 45.0%
GACGGCTAAGAAACGAGCAT+TGG - tig0021921:101617-101636 None:intergenic 50.0%
GAGGCGATAATCAACTGCGA+CGG - tig0021921:101635-101654 None:intergenic 50.0%
TCACGCAGTCAGCATATCTG+TGG + tig0021921:102198-102217 Msa1395260:intron 50.0%
GTGGCCGTTGGATTGAAGAT+CGG + tig0021921:102217-102236 Msa1395260:intron 50.0%
CCGTCCGATCTTCAATCCAA+CGG - tig0021921:102224-102243 None:intergenic 50.0%
CCGTTGGATTGAAGATCGGA+CGG + tig0021921:102221-102240 Msa1395260:intron 50.0%
CTGCAGGCAATCTTGGTTCA+TGG + tig0021921:102370-102389 Msa1395260:intron 50.0%
!! GGTCAGCAGTTCTGAATACC+GGG + tig0021921:102391-102410 Msa1395260:intron 50.0%
AAGATAGACGAAGGTCCTGC+TGG + tig0021921:102937-102956 Msa1395260:CDS 50.0%
AAGCATGCTTTGGCAACTGC+AGG - tig0021921:103068-103087 None:intergenic 50.0%
! GCCAAAGCATGCTTCTAAGG+GGG + tig0021921:103074-103093 Msa1395260:CDS 50.0%
! ACCCCCTTAGAAGCATGCTT+TGG - tig0021921:103078-103097 None:intergenic 50.0%
CTTTCCTAGCCCTCTTAACC+TGG + tig0021921:103321-103340 Msa1395260:intron 50.0%
CCAAGTCTCCCAGGTTAAGA+GGG - tig0021921:103333-103352 None:intergenic 50.0%
ACCAAGTCTCCCAGGTTAAG+AGG - tig0021921:103334-103353 None:intergenic 50.0%
ATTGGCCGGTCCAATCTTGT+AGG - tig0021921:103820-103839 None:intergenic 50.0%
TACAAGATTGGACCGGCCAA+TGG + tig0021921:103819-103838 Msa1395260:intron 50.0%
CATGGTAAGTTGCCATTGGC+CGG - tig0021921:103834-103853 None:intergenic 50.0%
GTATGGTGTACACCTTTGGG+AGG + tig0021921:104015-104034 Msa1395260:intron 50.0%
ACTGAGCTATGATCAGGGGA+AGG + tig0021921:104577-104596 Msa1395260:intron 50.0%
ATCAGGGGAAGGAGAGTCAA+CGG + tig0021921:104588-104607 Msa1395260:intron 50.0%
GGACATGAGAGTCAATGGAC+AGG + tig0021921:104609-104628 Msa1395260:intron 50.0%
ACTGCCAGAAACTGACCACA+GGG - tig0021921:104957-104976 None:intergenic 50.0%
!! TGTGGTCAGTTTCTGGCAGT+GGG + tig0021921:104957-104976 Msa1395260:CDS 50.0%
GTCCCTGAAATTGCAGGAAG+TGG + tig0021921:105152-105171 Msa1395260:intron 50.0%
!! CTGTTTTGAACGACCCGTCT+TGG + tig0021921:105282-105301 Msa1395260:intron 50.0%
!! AAGGGTCGTTCTGGAGAATC+TGG - tig0021921:105441-105460 None:intergenic 50.0%
! TCAGCAGGAGGCTTCTGAAA+TGG - tig0021921:105504-105523 None:intergenic 50.0%
TTGGGGTTAGGTTTCTCAGC+AGG - tig0021921:105519-105538 None:intergenic 50.0%
! CCGATTCCTTGTTTGGGGTT+AGG - tig0021921:105531-105550 None:intergenic 50.0%
CGTGCAAAGCTAGTGACAGA+AGG - tig0021921:106103-106122 None:intergenic 50.0%
!! CTGTCACTAGCTTTGCACGA+TGG + tig0021921:106104-106123 Msa1395260:intron 50.0%
! TAGCTTTGCACGATGGCTCT+TGG + tig0021921:106111-106130 Msa1395260:intron 50.0%
TGCCTACAGTACTCTGGGTA+TGG + tig0021921:106218-106237 Msa1395260:CDS 50.0%
CGGGTAGGTAAGTGTAGCTA+AGG + tig0021921:106595-106614 Msa1395260:three_prime_UTR 50.0%
! GTCTCTCCTGTTTGTTGGGT+AGG + tig0021921:106668-106687 Msa1395260:three_prime_UTR 50.0%
! AGTCTCGGGTACGAGCCTTT+TGG + tig0021921:101779-101798 Msa1395260:intron 55.0%
! TCGGGTACGAGCCTTTTGGA+TGG + tig0021921:101783-101802 Msa1395260:intron 55.0%
GTCAGCATATCTGTGGCCGT+TGG + tig0021921:102205-102224 Msa1395260:intron 55.0%
CTTGCATGTCCACTCTGGCT+GGG - tig0021921:102920-102939 None:intergenic 55.0%
TCTTGCATGTCCACTCTGGC+TGG - tig0021921:102921-102940 None:intergenic 55.0%
TCTCCCAGGTTAAGAGGGCT+AGG - tig0021921:103328-103347 None:intergenic 55.0%
CCCTCTTAACCTGGGAGACT+TGG + tig0021921:103330-103349 Msa1395260:intron 55.0%
GCCGGTCCAATCTTGTAGGA+AGG - tig0021921:103816-103835 None:intergenic 55.0%
GAGAGTCAATGGACAGGGGA+AGG + tig0021921:104615-104634 Msa1395260:intron 55.0%
GTCAATGGACAGGGGAAGGA+AGG + tig0021921:104619-104638 Msa1395260:intron 55.0%
GTCTCCCTGTGGTCAGTTTC+TGG + tig0021921:104950-104969 Msa1395260:CDS 55.0%
CACTGCCAGAAACTGACCAC+AGG - tig0021921:104958-104977 None:intergenic 55.0%
!! CTGTGGTCAGTTTCTGGCAG+TGG + tig0021921:104956-104975 Msa1395260:CDS 55.0%
GATTCAGGACTCGCAGCATC+TGG - tig0021921:104992-105011 None:intergenic 55.0%
CTGCATCCATATGCAGTCCG+TGG + tig0021921:105041-105060 Msa1395260:CDS 55.0%
CAGCAGCATAACAAGGGCCA+CGG - tig0021921:105061-105080 None:intergenic 55.0%
TTTGAACGACCCGTCTTGGC+AGG + tig0021921:105286-105305 Msa1395260:intron 55.0%
GGGTTAGGTTTCTCAGCAGG+AGG - tig0021921:105516-105535 None:intergenic 55.0%
GCAGAAGGACCCTATCAGAG+TGG + tig0021921:106276-106295 Msa1395260:CDS 55.0%
ACCCTATCAGAGTGGCAGCT+TGG + tig0021921:106284-106303 Msa1395260:CDS 55.0%
CCCAAGCTGCCACTCTGATA+GGG - tig0021921:106288-106307 None:intergenic 55.0%
CCCTATCAGAGTGGCAGCTT+GGG + tig0021921:106285-106304 Msa1395260:CDS 55.0%
TCCCAAGCTGCCACTCTGAT+AGG - tig0021921:106289-106308 None:intergenic 55.0%
AGTGTGTCGTGGTCTCCCTG+TGG + tig0021921:104939-104958 Msa1395260:CDS 60.0%
! CAAGGGCCACGGACTGCATA+TGG - tig0021921:105050-105069 None:intergenic 60.0%
GGTCACTGACCCAGCCAGAG+TGG + tig0021921:102908-102927 Msa1395260:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0021921 gene 101333 106971 101333 ID=Msa1395260;Name=Msa1395260
tig0021921 mRNA 101333 106971 101333 ID=Msa1395260-mRNA-1;Parent=Msa1395260;Name=Msa1395260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=232|1|1|1|1|1|6|440|458
tig0021921 exon 101333 101681 101333 ID=Msa1395260-mRNA-1:exon:14742;Parent=Msa1395260-mRNA-1
tig0021921 exon 102802 103290 102802 ID=Msa1395260-mRNA-1:exon:14743;Parent=Msa1395260-mRNA-1
tig0021921 exon 104867 105088 104867 ID=Msa1395260-mRNA-1:exon:14744;Parent=Msa1395260-mRNA-1
tig0021921 exon 105168 105240 105168 ID=Msa1395260-mRNA-1:exon:14745;Parent=Msa1395260-mRNA-1
tig0021921 exon 105442 105549 105442 ID=Msa1395260-mRNA-1:exon:14746;Parent=Msa1395260-mRNA-1
tig0021921 exon 106164 106971 106164 ID=Msa1395260-mRNA-1:exon:14747;Parent=Msa1395260-mRNA-1
tig0021921 five_prime_UTR 101333 101564 101333 ID=Msa1395260-mRNA-1:five_prime_utr;Parent=Msa1395260-mRNA-1
tig0021921 CDS 101565 101681 101565 ID=Msa1395260-mRNA-1:cds;Parent=Msa1395260-mRNA-1
tig0021921 CDS 102802 103290 102802 ID=Msa1395260-mRNA-1:cds;Parent=Msa1395260-mRNA-1
tig0021921 CDS 104867 105088 104867 ID=Msa1395260-mRNA-1:cds;Parent=Msa1395260-mRNA-1
tig0021921 CDS 105168 105240 105168 ID=Msa1395260-mRNA-1:cds;Parent=Msa1395260-mRNA-1
tig0021921 CDS 105442 105549 105442 ID=Msa1395260-mRNA-1:cds;Parent=Msa1395260-mRNA-1
tig0021921 CDS 106164 106531 106164 ID=Msa1395260-mRNA-1:cds;Parent=Msa1395260-mRNA-1
tig0021921 three_prime_UTR 106532 106971 106532 ID=Msa1395260-mRNA-1:three_prime_utr;Parent=Msa1395260-mRNA-1
Gene Sequence

>Msa1395260

ATGGAGTTCACTGAATGTTACAAACAAACGGGTCCTTCTTCTTTCTCTCCCAATGCTCGTTTCTTAGCCGTCGCAGTTGATTATCGCCTCGTCATTCGTGACACTCTTTCTTTCAAGGTTGTGCAATTGTTTTCATGCTTGGACAAAATTAGCTATATTGAATGGGCCCTTGATTCTGAGTACATCCTCTGCGGTCTCTATAAAAAGCCAATGATACAGGCTTGGTCACTGACCCAGCCAGAGTGGACATGCAAGATAGACGAAGGTCCTGCTGGTATTGCATATGCTAGGTGGAGCCCAGATAGTCGTCACATACTTACTACATCAGATTTTCAGTTGCGTTTAACAGTTTGGTCACTGGTAAACACGGCTTGTGTGCACCTGCAGTTGCCAAAGCATGCTTCTAAGGGGGTTTCCTTTACAAGAGATGGAAAATTTGCAGCGATTTGCACAAGGCGTGATTGCAAAGACCATATAAATCTGTTATCTTGTCATTCATGGGAAATAATGGGCATGTTTGCTGTTGACACTCTAGACTTGGCTGATGTCGAATGGTCACCTGACGATAGTTCTATAGTAATATGGGATTCACCACTTGATTACAAGGTTCTAATCTATTCTCCAGACGGAAGGTGTCTTTTCAAGTATCAAGCATATGAAAGTGGATTAGGAGTTAAAAGTGTGTCGTGGTCTCCCTGTGGTCAGTTTCTGGCAGTGGGTAGTTATGACCAGATGCTGCGAGTCCTGAATCATTTAACTTGGAAGACATTTGCAGAGTTTCTGCATCCATATGCAGTCCGTGGCCCTTGTTATGCTGCTGTTTTCAAAGAAGTGGATGAGCCTCTGCAACTTGATATGTCAGAACTGTGTTTGAGCGATGATTTTTCTCAAGGAAACAATGATTCTCCAGAACGACCCTTTAGAGTAAGGTATGAGGTCATGGAAGTTCCAATCAATTTACCATTTCAGAAGCCTCCTGCTGAGAAACCTAACCCCAAACAAGGAATCGGTTTTTTGTCATGGAGCAATGATAGCCAATACATATGTACTCGCAATGATAGTATGCCTACAGTACTCTGGGTATGGAATATTCGACAACTTGAGCTTACAGCAATCTTAGTGCAGAAGGACCCTATCAGAGTGGCAGCTTGGGATCCGACATCCACTCGCCTTGTTTTCTGCACCGGAAGCACACATTTATACATGTGGACCCCATCTGGTGCCTTTTGTGTTCATGTTCCTCTACCACAATTTTCGATAACAGACCTGAAGTGGAATTCTGATGGCAGTTGTCTGCTTCTTAAGGATAAGGAGACATTCTGCTGTGCTGCTGTACCCTTATTGCCAGAATCTAGTGAATATAGCTCAGATGAATGA
Protein sequence

>Msa1395260

MEFTECYKQTGPSSFSPNARFLAVAVDYRLVIRDTLSFKVVQLFSCLDKISYIEWALDSEYILCGLYKKPMIQAWSLTQPEWTCKIDEGPAGIAYARWSPDSRHILTTSDFQLRLTVWSLVNTACVHLQLPKHASKGVSFTRDGKFAAICTRRDCKDHINLLSCHSWEIMGMFAVDTLDLADVEWSPDDSSIVIWDSPLDYKVLIYSPDGRCLFKYQAYESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFLHPYAVRGPCYAAVFKEVDEPLQLDMSELCLSDDFSQGNNDSPERPFRVRYEVMEVPINLPFQKPPAEKPNPKQGIGFLSWSNDSQYICTRNDSMPTVLWVWNIRQLELTAILVQKDPIRVAAWDPTSTRLVFCTGSTHLYMWTPSGAFCVHVPLPQFSITDLKWNSDGSCLLLKDKETFCCAAVPLLPESSEYSSDE*