AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1396570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1396570 MtrunA17_Chr1g0213791 78.908 403 13 9 1 391 1 343 5.08e-170 478
Msa1396570 MtrunA17_Chr1g0174271 35.065 308 120 8 95 385 126 370 6.05e-32 124
Msa1396570 MtrunA17_Chr4g0032951 32.484 314 129 8 96 389 181 431 2.28e-28 115
Msa1396570 MtrunA17_Chr8g0351881 29.425 435 167 13 16 385 29 388 2.25e-27 112
Msa1396570 MtrunA17_Chr2g0329041 30.938 320 129 10 92 389 158 407 2.11e-25 106
Msa1396570 MtrunA17_Chr4g0014771 39.437 142 35 1 244 385 100 190 3.83e-24 98.6
Msa1396570 MtrunA17_Chr3g0087771 31.090 312 112 10 96 386 166 395 7.67e-23 99.4
Msa1396570 MtrunA17_Chr7g0258181 28.022 364 166 10 69 389 9 319 1.83e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1396570 AT1G05805.1 38.186 419 122 14 27 389 22 359 1.02e-59 197
Msa1396570 AT2G43140.2 42.105 323 77 13 92 389 71 308 5.00e-52 176
Msa1396570 AT2G43140.1 44.318 264 62 9 134 389 25 211 9.24e-49 164
Msa1396570 AT1G51140.1 41.176 153 35 2 233 385 279 376 1.14e-26 110
Msa1396570 AT1G35460.1 39.583 144 36 1 246 389 165 257 3.90e-26 106
Msa1396570 AT2G42280.1 44.444 135 24 1 255 389 272 355 2.51e-25 105
Msa1396570 AT4G09180.1 39.161 143 36 1 247 389 169 260 4.35e-24 100
Msa1396570 AT1G35460.2 55.814 86 29 3 233 309 144 229 3.65e-22 94.4
Msa1396570 AT2G42280.3 38.798 183 41 5 206 374 215 340 7.54e-22 96.3

Find 134 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTTGTTGTTATTATTAT+CGG 0.271568 tig0022040:+86533 None:intergenic
AAGAAGCAAGTTGGTGGTTT+GGG 0.287639 tig0022040:+87314 None:intergenic
CAAGTTGGTGGTTTGGGTGG+GGG 0.287729 tig0022040:+87320 None:intergenic
GCAACAGACCTTTCTGAAAC+TGG 0.318803 tig0022040:+84389 None:intergenic
GCAAGTTGGTGGTTTGGGTG+GGG 0.319086 tig0022040:+87319 None:intergenic
TTATTCAGACATGCTGGATT+TGG 0.325679 tig0022040:-83358 Msa1396570:CDS
GGAGGATCACGCCTTCTTCC+TGG 0.332014 tig0022040:-87027 Msa1396570:CDS
CCCAGGTATTGGTACTAGTA+TGG 0.340957 tig0022040:+86565 None:intergenic
TTTACAAGGGACGGAATCTT+GGG 0.341870 tig0022040:+86222 None:intergenic
AACAAACAAGAAAGATATAA+TGG 0.360162 tig0022040:+87365 None:intergenic
TCCTCGTAGCATTGCTGAAC+GGG 0.362115 tig0022040:-86170 Msa1396570:intron
GGTCAAGCTGGTGGCTTTGA+TGG 0.364612 tig0022040:-86913 Msa1396570:CDS
AAGATCTCTGCTGTTGTTGT+TGG 0.370571 tig0022040:+86944 None:intergenic
TTGTTGTTGTTATTATTATC+GGG 0.382053 tig0022040:+86534 None:intergenic
TAGTGGTTAGCATACGAAAA+TGG 0.383795 tig0022040:-87503 Msa1396570:five_prime_UTR
AATTATACCTTATCCATGTT+AGG 0.394411 tig0022040:+85990 None:intergenic
CGTCATACAGCCAGGATTGC+TGG 0.396533 tig0022040:+84290 None:intergenic
GCATCAGCAGCAGCTGGAAA+TGG 0.408966 tig0022040:-86594 Msa1396570:CDS
TAAGAAGCAAGTTGGTGGTT+TGG 0.410636 tig0022040:+87313 None:intergenic
AAATAATGTTGTCCCGTTCC+AGG 0.410987 tig0022040:+87009 None:intergenic
AACGGGACTAGTTAGAAATC+TGG 0.423807 tig0022040:-82731 Msa1396570:three_prime_UTR
AGCAAGTTGGTGGTTTGGGT+GGG 0.424425 tig0022040:+87318 None:intergenic
GGACACACCTCCAGCAATCC+TGG 0.428501 tig0022040:-84300 Msa1396570:CDS
GCTGGAGGTGTGTCCACGGC+GGG 0.432360 tig0022040:+84308 None:intergenic
TTGAGAAGAAGAAAATACTA+TGG 0.436830 tig0022040:+86503 None:intergenic
GAAAGAAGGCGGCAATGGTA+TGG 0.439610 tig0022040:-87584 Msa1396570:five_prime_UTR
TAGTCTCCCACAAACTTCTC+TGG 0.449517 tig0022040:-86272 Msa1396570:CDS
TTCAGACATGCTGGATTTGG+CGG 0.454145 tig0022040:-83355 Msa1396570:CDS
CGAGTTTGAAGCAGGACTAT+AGG 0.455582 tig0022040:+84341 None:intergenic
TCACGCCTTCTTCCTGGAAC+GGG 0.457043 tig0022040:-87021 Msa1396570:CDS
GTATCGTCCACCTTCCTCAT+CGG 0.462261 tig0022040:-87172 Msa1396570:CDS
TGGCAAGTTGAAGAAGTTGC+AGG 0.465868 tig0022040:-86021 Msa1396570:CDS
GAGAGAAGAACTAGAATAAG+TGG 0.469542 tig0022040:-86041 Msa1396570:CDS
TATGATTGAGAGTGGCTAGA+TGG 0.473699 tig0022040:+86845 None:intergenic
AAGCAAGTTGGTGGTTTGGG+TGG 0.474942 tig0022040:+87317 None:intergenic
AGGTCTTCAAACTCAAGTTC+AGG 0.476074 tig0022040:-83319 Msa1396570:intron
TAGAAGAATAAGAAGCAAGT+TGG 0.476152 tig0022040:+87305 None:intergenic
GGGGCCTCCACCCCAGGTAT+TGG 0.479871 tig0022040:+86554 None:intergenic
ACAGAGCTCCATCAGTCAAA+CGG 0.480020 tig0022040:-87118 Msa1396570:CDS
TATCGTCCACCTTCCTCATC+GGG 0.481788 tig0022040:-87171 Msa1396570:CDS
CAGAGCTCCATCAGTCAAAC+GGG 0.487084 tig0022040:-87117 Msa1396570:CDS
AAGAATAAGAAGCAAGTTGG+TGG 0.487221 tig0022040:+87308 None:intergenic
CATAATAACAATAACAATAA+CGG 0.488709 tig0022040:-86826 Msa1396570:intron
ATTATCGGGGCCTCCACCCC+AGG 0.489981 tig0022040:+86548 None:intergenic
TGAATAATAACTTATTCTCA+TGG 0.491469 tig0022040:-82775 Msa1396570:three_prime_UTR
TGAACTCGCGAGTTTGAAGC+AGG 0.491820 tig0022040:+84333 None:intergenic
ACCACTGTGGATGCCATCAT+AGG 0.495661 tig0022040:-87054 Msa1396570:CDS
ATGAGTGGCGCATCCACGCT+TGG 0.498051 tig0022040:+86192 None:intergenic
AAGAAGGTCGGGATCATCAT+TGG 0.499212 tig0022040:+86419 None:intergenic
AACAAGTTATTCAGACATGC+TGG 0.500068 tig0022040:-83364 Msa1396570:CDS
TGTACTTTGTTTGCATCCGC+AGG 0.501831 tig0022040:+83056 None:intergenic
CCCACAAACTTCTCTGGAGA+TGG 0.503550 tig0022040:-86266 Msa1396570:CDS
GTTAAAAGTATTGTACAAGT+GGG 0.507074 tig0022040:-87417 Msa1396570:five_prime_UTR
TAATTTAACGAATGGAAAGA+AGG 0.507445 tig0022040:-87598 None:intergenic
AAGTCTGAATTGAGTTTCAC+TGG 0.510691 tig0022040:-86666 Msa1396570:CDS
CCTTGTACCTAACATGGATA+AGG 0.512854 tig0022040:-85997 Msa1396570:intron
AGACCTTTCTGAAACTGGTC+TGG 0.519497 tig0022040:+84394 None:intergenic
CCTTATCCATGTTAGGTACA+AGG 0.519581 tig0022040:+85997 None:intergenic
CAAACGGGTCTCACAAGGTA+TGG 0.525076 tig0022040:-87102 Msa1396570:CDS
AAAGAAGGCGGCAATGGTAT+GGG 0.526664 tig0022040:-87583 Msa1396570:five_prime_UTR
AGGCAATGTAGAAGAAGGTC+GGG 0.527337 tig0022040:+86408 None:intergenic
TCCATACTAGTACCAATACC+TGG 0.528579 tig0022040:-86566 Msa1396570:CDS
GTGGTGTTGAGGAGAGAGCT+AGG 0.530531 tig0022040:+87072 None:intergenic
GATTATGCATCAGCAGCAGC+TGG 0.531366 tig0022040:-86600 Msa1396570:CDS
GGCTAGATGGTTGAGAAAGC+CGG 0.532966 tig0022040:+86858 None:intergenic
GAATTGAGTTTCACTGGTGG+AGG 0.537805 tig0022040:-86660 Msa1396570:CDS
GTTGTCCCGTTCCAGGAAGA+AGG 0.539397 tig0022040:+87016 None:intergenic
CGAAAATGGAGATACGTTGA+AGG 0.543637 tig0022040:-87489 Msa1396570:five_prime_UTR
AGTTAAAAGTATTGTACAAG+TGG 0.543783 tig0022040:-87418 Msa1396570:five_prime_UTR
CCATCTCCAGAGAAGTTTGT+GGG 0.544047 tig0022040:+86266 None:intergenic
TGTAAAATCCGTGCCAAGCG+TGG 0.544695 tig0022040:-86205 Msa1396570:CDS
GGGGAATATTATGCATAAGC+TGG 0.546019 tig0022040:+86242 None:intergenic
TGGCGCATCCACGCTTGGCA+CGG 0.548021 tig0022040:+86197 None:intergenic
CCTCAATGCCCTCGAAACTC+AGG 0.548042 tig0022040:-86388 Msa1396570:intron
ATACTTGTATTTGAAAGTAG+AGG 0.552797 tig0022040:-82851 Msa1396570:three_prime_UTR
ATCCTCGTAGCATTGCTGAA+CGG 0.552987 tig0022040:-86171 Msa1396570:CDS
TGTGAGACCCGTTTGACTGA+TGG 0.553828 tig0022040:+87110 None:intergenic
AGTACCAATACCTGGGGTGG+AGG 0.556362 tig0022040:-86558 Msa1396570:CDS
GAATGGAAAGAAGGCGGCAA+TGG 0.556862 tig0022040:-87589 None:intergenic
TCCATCTCCAGAGAAGTTTG+TGG 0.557386 tig0022040:+86265 None:intergenic
GATTGCTGGAGGTGTGTCCA+CGG 0.561028 tig0022040:+84304 None:intergenic
TGATCCTCCTACTCCTATGA+TGG 0.563521 tig0022040:+87041 None:intergenic
GAGATAGTACCTGAGTTTCG+AGG 0.564156 tig0022040:+86379 None:intergenic
TGTTGTTGTTATTATTATCG+GGG 0.564933 tig0022040:+86535 None:intergenic
TCTTCTTACGAAGGTCAAGC+TGG 0.565420 tig0022040:-86925 Msa1396570:CDS
ATCACGCCTTCTTCCTGGAA+CGG 0.566174 tig0022040:-87022 Msa1396570:CDS
GGCACTGTGCATAGAAGTCA+AGG 0.570057 tig0022040:-83004 Msa1396570:three_prime_UTR
CATTGAGGCAATGTAGAAGA+AGG 0.573373 tig0022040:+86403 None:intergenic
CCTGAGTTTCGAGGGCATTG+AGG 0.579102 tig0022040:+86388 None:intergenic
AGATGGTTGAGAAAGCCGGC+TGG 0.579941 tig0022040:+86862 None:intergenic
ATTGTTATTATGATTGAGAG+TGG 0.580253 tig0022040:+86837 None:intergenic
GAGGCAATGTAGAAGAAGGT+CGG 0.583589 tig0022040:+86407 None:intergenic
GTGGATGCCATCATAGGAGT+AGG 0.587569 tig0022040:-87048 Msa1396570:CDS
CTGTTGTTGCTGAGACGAAG+AGG 0.588667 tig0022040:+87137 None:intergenic
GAGACTAAGACAATTGAAGA+AGG 0.591621 tig0022040:+87243 None:intergenic
AAATGGAGATACGTTGAAGG+TGG 0.592110 tig0022040:-87486 Msa1396570:five_prime_UTR
TTGGCGGTTCAACATATCAA+AGG 0.593157 tig0022040:-83339 Msa1396570:CDS
CCATACTAGTACCAATACCT+GGG 0.597961 tig0022040:-86565 Msa1396570:CDS
AGATAGTACCTGAGTTTCGA+GGG 0.598370 tig0022040:+86380 None:intergenic
GACCTTGAGAATTGCACCTG+CGG 0.607185 tig0022040:-83072 Msa1396570:CDS
CGTCAGAAAAGCTCTCCAGC+CGG 0.607974 tig0022040:-86877 Msa1396570:CDS
TGGACGATACATGATGATGA+AGG 0.609795 tig0022040:+87185 None:intergenic
CAACTTTAAAAGAATAACGA+AGG 0.609890 tig0022040:-82952 Msa1396570:three_prime_UTR
AGCAATGCTACGAGGATGAG+TGG 0.612328 tig0022040:+86177 None:intergenic
GATGCCATCATAGGAGTAGG+AGG 0.612834 tig0022040:-87045 Msa1396570:CDS
ATCCGCAGGTGCAATTCTCA+AGG 0.615432 tig0022040:+83070 None:intergenic
AAGGTCTGTTGCGAAACAGA+TGG 0.616385 tig0022040:-84378 Msa1396570:CDS
TATTGTACAAGTGGGGTGTG+AGG 0.616461 tig0022040:-87409 Msa1396570:five_prime_UTR
GAAGAAGAACCCGATGAGGA+AGG 0.617996 tig0022040:+87162 None:intergenic
GAAGAACCCGATGAGGAAGG+TGG 0.619178 tig0022040:+87165 None:intergenic
TTCTAGACTACGTCTACCAC+AGG 0.619562 tig0022040:+82898 None:intergenic
TTGATTGAATTGCAGCTGGG+GGG 0.621095 tig0022040:-86719 Msa1396570:intron
AATGGAGATACGTTGAAGGT+GGG 0.624586 tig0022040:-87485 Msa1396570:five_prime_UTR
TGCTGGAGGTGTGTCCACGG+CGG 0.624620 tig0022040:+84307 None:intergenic
TCAGTCAAACGGGTCTCACA+AGG 0.625307 tig0022040:-87107 Msa1396570:CDS
ACTAGTACCAATACCTGGGG+TGG 0.626810 tig0022040:-86561 Msa1396570:CDS
TCGATCAATCTGTGTGCGAG+CGG 0.634546 tig0022040:+87221 None:intergenic
TCGCGAGTTCAAACCCGCCG+TGG 0.634719 tig0022040:-84321 Msa1396570:CDS
TGGCATCCACAGTGGTGTTG+AGG 0.637238 tig0022040:+87061 None:intergenic
TTACAAGGGACGGAATCTTG+GGG 0.638798 tig0022040:+86223 None:intergenic
GTACCAGACCAGTTTCAGAA+AGG 0.641806 tig0022040:-84397 Msa1396570:CDS
TTAAAAGTATTGTACAAGTG+GGG 0.642477 tig0022040:-87416 Msa1396570:five_prime_UTR
TCTTACGAAGGTCAAGCTGG+TGG 0.649831 tig0022040:-86922 Msa1396570:CDS
GCAGGACCTTGTACCTAACA+TGG 0.655399 tig0022040:-86003 Msa1396570:CDS
TTTAACGAATGGAAAGAAGG+CGG 0.657049 tig0022040:-87595 None:intergenic
TCTGAATTGAGTTTCACTGG+TGG 0.663147 tig0022040:-86663 Msa1396570:CDS
GGAAGAAGAAGAACCCGATG+AGG 0.673921 tig0022040:+87158 None:intergenic
TCCTATGATGGCATCCACAG+TGG 0.685277 tig0022040:+87053 None:intergenic
CAGCAGAGATCTTCTTACGA+AGG 0.692275 tig0022040:-86934 Msa1396570:CDS
CTCTCTCCTCAACACCACTG+TGG 0.695914 tig0022040:-87067 Msa1396570:CDS
ACCCGTTCAGCAATGCTACG+AGG 0.708822 tig0022040:+86169 None:intergenic
CATACAGCCAGGATTGCTGG+AGG 0.713395 tig0022040:+84293 None:intergenic
CATACTAGTACCAATACCTG+GGG 0.722107 tig0022040:-86564 Msa1396570:CDS
TGTATGTTGTAATCTACCTG+TGG 0.747002 tig0022040:-82914 Msa1396570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAATTATTTATGTATTTA+AGG + tig0022040:85547-85566 None:intergenic 10.0%
!! AAAATTAATATTTCATTGAT+AGG - tig0022040:87097-87116 Msa1396570:CDS 10.0%
!! CATAATAACAATAACAATAA+CGG - tig0022040:83470-83489 Msa1396570:intron 15.0%
!! TAACTAAAAATGAAATAATG+TGG + tig0022040:83973-83992 None:intergenic 15.0%
!! AAATGAATTAATAATAGGTA+AGG + tig0022040:84364-84383 None:intergenic 15.0%
!! TCTATTAGAAACTTAATTAA+GGG + tig0022040:84604-84623 None:intergenic 15.0%
!!! TTCGTTTTTTTATAAAACTA+TGG - tig0022040:84959-84978 Msa1396570:intron 15.0%
!!! CTTTTAGATATATACTTTTA+TGG + tig0022040:85225-85244 None:intergenic 15.0%
!!! TTTATGTATGATAGTTTTTA+GGG + tig0022040:85464-85483 None:intergenic 15.0%
!!! ATTTATGTATGATAGTTTTT+AGG + tig0022040:85465-85484 None:intergenic 15.0%
!!! TCTTACTTTGAAAAATAAAA+AGG + tig0022040:86645-86664 None:intergenic 15.0%
!! AATTATGAACTAATTTAACT+TGG + tig0022040:86720-86739 None:intergenic 15.0%
!!! ATATTTTCTACAATAAGTAT+TGG - tig0022040:86791-86810 Msa1396570:intron 15.0%
!!! AATTAAAAAAAAGAGTGTAG+TGG - tig0022040:82739-82758 Msa1396570:three_prime_UTR 20.0%
!! AACAAACAAGAAAGATATAA+TGG + tig0022040:82934-82953 None:intergenic 20.0%
!!! TTGTTGTTGTTATTATTATC+GGG + tig0022040:83765-83784 None:intergenic 20.0%
!!! GTTGTTGTTGTTATTATTAT+CGG + tig0022040:83766-83785 None:intergenic 20.0%
!! CTAGCAAATGAATTAATAAT+AGG + tig0022040:84369-84388 None:intergenic 20.0%
!! TTCCTAATTTATCATCATTA+AGG - tig0022040:84398-84417 Msa1396570:CDS 20.0%
!! TACCTTAATGATGATAAATT+AGG + tig0022040:84403-84422 None:intergenic 20.0%
!! GTCTATTAGAAACTTAATTA+AGG + tig0022040:84605-84624 None:intergenic 20.0%
!! AAAATAAGATAAAGGAAAAG+GGG + tig0022040:84868-84887 None:intergenic 20.0%
!! CAAAATAAGATAAAGGAAAA+GGG + tig0022040:84869-84888 None:intergenic 20.0%
!!! CTTTTCCTTTATCTTATTTT+GGG - tig0022040:84868-84887 Msa1396570:intron 20.0%
!!! TTTTCCTTTATCTTATTTTG+GGG - tig0022040:84869-84888 Msa1396570:intron 20.0%
!! AGCTATTACGTATAATATAA+AGG - tig0022040:85149-85168 Msa1396570:intron 20.0%
!! AGTATATATCTAAAAGAACA+AGG - tig0022040:85229-85248 Msa1396570:intron 20.0%
!! TCTTTGTTAATGATAACTAA+CGG - tig0022040:85347-85366 Msa1396570:intron 20.0%
!!! TTATGTATGATAGTTTTTAG+GGG + tig0022040:85463-85482 None:intergenic 20.0%
!!! TACTTTGATTTGTTAATCAA+TGG - tig0022040:86166-86185 Msa1396570:intron 20.0%
!! TAAATGGTAGTTAAATACTA+TGG + tig0022040:86570-86589 None:intergenic 20.0%
!! GTAGAAAATATTTGAATTAC+TGG + tig0022040:86782-86801 None:intergenic 20.0%
!!! TTATGTTTTATGAGATTCTA+TGG - tig0022040:87271-87290 Msa1396570:five_prime_UTR 20.0%
!!! ACAAGTATCAAATTTTGAAA+AGG + tig0022040:87433-87452 None:intergenic 20.0%
!! TGAATAATAACTTATTCTCA+TGG - tig0022040:87521-87540 Msa1396570:five_prime_UTR 20.0%
!!! AGTTAAAAGTATTGTACAAG+TGG - tig0022040:82878-82897 Msa1396570:three_prime_UTR 25.0%
!!! GTTAAAAGTATTGTACAAGT+GGG - tig0022040:82879-82898 Msa1396570:three_prime_UTR 25.0%
!!! TTAAAAGTATTGTACAAGTG+GGG - tig0022040:82880-82899 Msa1396570:three_prime_UTR 25.0%
!! ATTGTTATTATGATTGAGAG+TGG + tig0022040:83462-83481 None:intergenic 25.0%
!! TGCATAATCAACAACATTTT+CGG + tig0022040:83685-83704 None:intergenic 25.0%
!! TGTTGTTGTTATTATTATCG+GGG + tig0022040:83764-83783 None:intergenic 25.0%
! TTGAGAAGAAGAAAATACTA+TGG + tig0022040:83796-83815 None:intergenic 25.0%
! AAAATGAAATAATGTGGTTG+TGG + tig0022040:83967-83986 None:intergenic 25.0%
! AATTATACCTTATCCATGTT+AGG + tig0022040:84309-84328 None:intergenic 25.0%
! AATAATAGGTAAGGAAAGTT+AGG + tig0022040:84355-84374 None:intergenic 25.0%
! TGTAGTCAAAAATACTACTA+AGG - tig0022040:84488-84507 Msa1396570:intron 25.0%
! TACTACTAAGGATAAAAACT+AGG - tig0022040:84500-84519 Msa1396570:intron 25.0%
! ACTACTAAGGATAAAAACTA+GGG - tig0022040:84501-84520 Msa1396570:intron 25.0%
! GACATTCAATGAAAACTTAA+GGG + tig0022040:84543-84562 None:intergenic 25.0%
! TGACATTCAATGAAAACTTA+AGG + tig0022040:84544-84563 None:intergenic 25.0%
! AAACAGTGTTAAACAAAAAG+GGG + tig0022040:84636-84655 None:intergenic 25.0%
! CAAACAGTGTTAAACAAAAA+GGG + tig0022040:84637-84656 None:intergenic 25.0%
!!! AGTAGCTTTTTTTCTTTCAT+TGG + tig0022040:84688-84707 None:intergenic 25.0%
! CCAAAATAAGATAAAGGAAA+AGG + tig0022040:84870-84889 None:intergenic 25.0%
!!! CCTTTTCCTTTATCTTATTT+TGG - tig0022040:84867-84886 Msa1396570:intron 25.0%
! ATAAATTCCCAACTCAATAA+GGG + tig0022040:84910-84929 None:intergenic 25.0%
! AATAAATTCCCAACTCAATA+AGG + tig0022040:84911-84930 None:intergenic 25.0%
! TTTATTGTCAGTATTGTGTT+TGG - tig0022040:84925-84944 Msa1396570:intron 25.0%
! TTATTGTCAGTATTGTGTTT+GGG - tig0022040:84926-84945 Msa1396570:intron 25.0%
!!! ATTGCTTTGTTTAAAACTAG+AGG - tig0022040:85389-85408 Msa1396570:intron 25.0%
!!! TTGCTTTGTTTAAAACTAGA+GGG - tig0022040:85390-85409 Msa1396570:intron 25.0%
! TTTATGTATTTAAGGACTGA+TGG + tig0022040:85539-85558 None:intergenic 25.0%
!! ACAACTTTTGTTAGTGTTAT+TGG + tig0022040:86517-86536 None:intergenic 25.0%
!! CAAGCTACTTTAAGTTTAAA+TGG + tig0022040:86586-86605 None:intergenic 25.0%
! AAGTAGCTTGAAACATTATA+TGG - tig0022040:86596-86615 Msa1396570:CDS 25.0%
! TTAGTTCATAATTACAGAGT+AGG - tig0022040:86727-86746 Msa1396570:intron 25.0%
! GCATCTTCAATTGAATTTAT+AGG - tig0022040:86815-86834 Msa1396570:intron 25.0%
! AGTGTTTAACTGTGTATTAT+AGG - tig0022040:86875-86894 Msa1396570:CDS 25.0%
!!! TGTGAAGCTCTTTTTAATTT+GGG + tig0022040:87060-87079 None:intergenic 25.0%
!!! ATGTGAAGCTCTTTTTAATT+TGG + tig0022040:87061-87080 None:intergenic 25.0%
!!! GTTATTCTTTTAAAGTTGGA+AGG + tig0022040:87342-87361 None:intergenic 25.0%
!!! CTTCGTTATTCTTTTAAAGT+TGG + tig0022040:87346-87365 None:intergenic 25.0%
!! CAACTTTAAAAGAATAACGA+AGG - tig0022040:87344-87363 Msa1396570:five_prime_UTR 25.0%
! ATACTTGTATTTGAAAGTAG+AGG - tig0022040:87445-87464 Msa1396570:five_prime_UTR 25.0%
!!! TTTTTGGATTGTTTCTTGTT+TGG - tig0022040:87483-87502 Msa1396570:five_prime_UTR 25.0%
!!! TTTTGGATTGTTTCTTGTTT+GGG - tig0022040:87484-87503 Msa1396570:five_prime_UTR 25.0%
! TTGAAAGAAAAAGAGTGTAG+TGG - tig0022040:82776-82795 Msa1396570:three_prime_UTR 30.0%
!! GGCATGTTTTGAATAAAAAG+AGG - tig0022040:82832-82851 Msa1396570:three_prime_UTR 30.0%
TAGAAGAATAAGAAGCAAGT+TGG + tig0022040:82994-83013 None:intergenic 30.0%
TAAGACAAAGTCAAAGTCAA+TGG - tig0022040:83510-83529 Msa1396570:intron 30.0%
!! ATTTTTGATTGAATTGCAGC+TGG - tig0022040:83573-83592 Msa1396570:intron 30.0%
!! TTTTTGATTGAATTGCAGCT+GGG - tig0022040:83574-83593 Msa1396570:intron 30.0%
AAACAGAAGCAGAAAGAAAA+AGG + tig0022040:84181-84200 None:intergenic 30.0%
AAGGTAATGCACACATTAAT+TGG - tig0022040:84417-84436 Msa1396570:CDS 30.0%
CTTGTAGTAATGAAGTAGTT+AGG - tig0022040:84460-84479 Msa1396570:intron 30.0%
! GTCAAGTTTAAAACTAGAGA+GGG + tig0022040:84573-84592 None:intergenic 30.0%
! TGTCAAGTTTAAAACTAGAG+AGG + tig0022040:84574-84593 None:intergenic 30.0%
AACAGTGTTAAACAAAAAGG+GGG + tig0022040:84635-84654 None:intergenic 30.0%
GCAAACAGTGTTAAACAAAA+AGG + tig0022040:84638-84657 None:intergenic 30.0%
!!! CCTTTTTTTTCGTCTATAAC+CGG - tig0022040:84829-84848 Msa1396570:intron 30.0%
AAGGGGATGAAATTAAATAC+CGG + tig0022040:84851-84870 None:intergenic 30.0%
AGAACCCCAAAATAAGATAA+AGG + tig0022040:84876-84895 None:intergenic 30.0%
TTTCAAATCCCTTATTGAGT+TGG - tig0022040:84899-84918 Msa1396570:intron 30.0%
TTCAAATCCCTTATTGAGTT+GGG - tig0022040:84900-84919 Msa1396570:intron 30.0%
! AAAACTATGGTTGTTTCAAG+TGG - tig0022040:84972-84991 Msa1396570:intron 30.0%
! AACTGTGAGACAATGATTTT+GGG + tig0022040:85007-85026 None:intergenic 30.0%
! ATAGCTTTACTTCATGTTGT+TGG + tig0022040:85135-85154 None:intergenic 30.0%
ATGATAATAGTAAATGAGCC+AGG - tig0022040:85174-85193 Msa1396570:intron 30.0%
!! TGCTTTGTTTAAAACTAGAG+GGG - tig0022040:85391-85410 Msa1396570:intron 30.0%
! ATGTTATTTAGTGAAACCTC+AGG - tig0022040:85420-85439 Msa1396570:intron 30.0%
! TGTTATTTAGTGAAACCTCA+GGG - tig0022040:85421-85440 Msa1396570:intron 30.0%
!!! GCTGTTTCTGGTTTTTTAAA+GGG + tig0022040:85640-85659 None:intergenic 30.0%
! CTTTAAAAAACCAGAAACAG+CGG - tig0022040:85639-85658 Msa1396570:intron 30.0%
GAAGCTCATTTACACTAAAA+TGG + tig0022040:86343-86362 None:intergenic 30.0%
TAGCAGATAATACAGAGAAT+GGG - tig0022040:86424-86443 Msa1396570:CDS 30.0%
AGTTGTAGAAATAGTTTCAG+TGG - tig0022040:86531-86550 Msa1396570:CDS 30.0%
ATAATTACAGAGTAGGTAGA+TGG - tig0022040:86734-86753 Msa1396570:intron 30.0%
AATTACTGGTAATACTCTCA+TGG + tig0022040:86768-86787 None:intergenic 30.0%
! GTTGAGTTCTGTTGAATTTT+TGG - tig0022040:87467-87486 Msa1396570:five_prime_UTR 30.0%
TAGTGGTTAGCATACGAAAA+TGG - tig0022040:82793-82812 Msa1396570:three_prime_UTR 35.0%
! AAGAATAAGAAGCAAGTTGG+TGG + tig0022040:82991-83010 None:intergenic 35.0%
GAGACTAAGACAATTGAAGA+AGG + tig0022040:83056-83075 None:intergenic 35.0%
!! TTTTGATTGAATTGCAGCTG+GGG - tig0022040:83575-83594 Msa1396570:intron 35.0%
AAGTCTGAATTGAGTTTCAC+TGG - tig0022040:83630-83649 Msa1396570:intron 35.0%
CTATTGCAATACATGTATGC+AGG - tig0022040:84233-84252 Msa1396570:intron 35.0%
GAGAGAAGAACTAGAATAAG+TGG - tig0022040:84255-84274 Msa1396570:intron 35.0%
GAAAGTTAGGAAGCAAAAGT+TGG + tig0022040:84342-84361 None:intergenic 35.0%
ACAGTGTTAAACAAAAAGGG+GGG + tig0022040:84634-84653 None:intergenic 35.0%
CCGGTTATAGACGAAAAAAA+AGG + tig0022040:84832-84851 None:intergenic 35.0%
GTATTGTGTTTGGGAAGATA+TGG - tig0022040:84935-84954 Msa1396570:intron 35.0%
! CAACTGTGAGACAATGATTT+TGG + tig0022040:85008-85027 None:intergenic 35.0%
AGAAAGAAGAATGCTAGACA+TGG - tig0022040:85271-85290 Msa1396570:intron 35.0%
!! ATGACATTTCCAGCTTGTTA+TGG + tig0022040:85320-85339 None:intergenic 35.0%
GTTATTTAGTGAAACCTCAG+GGG - tig0022040:85422-85441 Msa1396570:intron 35.0%
!!! CGCTGTTTCTGGTTTTTTAA+AGG + tig0022040:85641-85660 None:intergenic 35.0%
! GGTTTTCTTTCAGTTACACA+TGG + tig0022040:85674-85693 None:intergenic 35.0%
TGTGTAACTGAAAGAAAACC+TGG - tig0022040:85674-85693 Msa1396570:intron 35.0%
GTGTAACTGAAAGAAAACCT+GGG - tig0022040:85675-85694 Msa1396570:intron 35.0%
TAGAATCGTCTGATACTACT+CGG - tig0022040:86053-86072 Msa1396570:intron 35.0%
ACAATAATACTCTCAAGTCC+AGG + tig0022040:86109-86128 None:intergenic 35.0%
TCACAGTAAAACATACTCTC+CGG + tig0022040:86215-86234 None:intergenic 35.0%
GTAGCAGATAATACAGAGAA+TGG - tig0022040:86423-86442 Msa1396570:CDS 35.0%
ATTCGACTATACAAAGAGTC+AGG - tig0022040:86686-86705 Msa1396570:CDS 35.0%
AACAAGTTATTCAGACATGC+TGG - tig0022040:86932-86951 Msa1396570:CDS 35.0%
TTATTCAGACATGCTGGATT+TGG - tig0022040:86938-86957 Msa1396570:CDS 35.0%
ATTCTACTCAGTAGAAGCTA+CGG + tig0022040:87015-87034 None:intergenic 35.0%
!! CATAGAAGTCAAGGTTTTGA+TGG - tig0022040:87301-87320 Msa1396570:five_prime_UTR 35.0%
TGTATGTTGTAATCTACCTG+TGG - tig0022040:87382-87401 Msa1396570:five_prime_UTR 35.0%
CAGAAAAATAGAAGCGAGAA+CGG - tig0022040:87547-87566 Msa1396570:five_prime_UTR 35.0%
AGAAAAATAGAAGCGAGAAC+GGG - tig0022040:87548-87567 Msa1396570:five_prime_UTR 35.0%
CGAAAATGGAGATACGTTGA+AGG - tig0022040:82807-82826 Msa1396570:three_prime_UTR 40.0%
AAATGGAGATACGTTGAAGG+TGG - tig0022040:82810-82829 Msa1396570:three_prime_UTR 40.0%
AATGGAGATACGTTGAAGGT+GGG - tig0022040:82811-82830 Msa1396570:three_prime_UTR 40.0%
!! AAGAAGCAAGTTGGTGGTTT+GGG + tig0022040:82985-83004 None:intergenic 40.0%
!! TAAGAAGCAAGTTGGTGGTT+TGG + tig0022040:82986-83005 None:intergenic 40.0%
! TGGACGATACATGATGATGA+AGG + tig0022040:83114-83133 None:intergenic 40.0%
AAATAATGTTGTCCCGTTCC+AGG + tig0022040:83290-83309 None:intergenic 40.0%
AAGATCTCTGCTGTTGTTGT+TGG + tig0022040:83355-83374 None:intergenic 40.0%
TATGATTGAGAGTGGCTAGA+TGG + tig0022040:83454-83473 None:intergenic 40.0%
TTTGATTGAATTGCAGCTGG+GGG - tig0022040:83576-83595 Msa1396570:intron 40.0%
TCTGAATTGAGTTTCACTGG+TGG - tig0022040:83633-83652 Msa1396570:intron 40.0%
TCCATACTAGTACCAATACC+TGG - tig0022040:83730-83749 Msa1396570:intron 40.0%
CCATACTAGTACCAATACCT+GGG - tig0022040:83731-83750 Msa1396570:intron 40.0%
CATACTAGTACCAATACCTG+GGG - tig0022040:83732-83751 Msa1396570:intron 40.0%
CATTGAGGCAATGTAGAAGA+AGG + tig0022040:83896-83915 None:intergenic 40.0%
AGATAGTACCTGAGTTTCGA+GGG + tig0022040:83919-83938 None:intergenic 40.0%
GTGGGAGACTATACTGAATT+AGG + tig0022040:84015-84034 None:intergenic 40.0%
GGGGAATATTATGCATAAGC+TGG + tig0022040:84057-84076 None:intergenic 40.0%
TTTACAAGGGACGGAATCTT+GGG + tig0022040:84077-84096 None:intergenic 40.0%
! TTTTACAAGGGACGGAATCT+TGG + tig0022040:84078-84097 None:intergenic 40.0%
CCTTATCCATGTTAGGTACA+AGG + tig0022040:84302-84321 None:intergenic 40.0%
CCTTGTACCTAACATGGATA+AGG - tig0022040:84299-84318 Msa1396570:CDS 40.0%
!! GAAGCAAAAGTTGGTAGCAT+GGG + tig0022040:84333-84352 None:intergenic 40.0%
CAGTGTTAAACAAAAAGGGG+GGG + tig0022040:84633-84652 None:intergenic 40.0%
TTTGCCCACGTTAAGTTAAG+AGG - tig0022040:84653-84672 Msa1396570:intron 40.0%
GTAGCCTCTTAACTTAACGT+GGG + tig0022040:84660-84679 None:intergenic 40.0%
AGTAGCCTCTTAACTTAACG+TGG + tig0022040:84661-84680 None:intergenic 40.0%
ACAAATGAACCCCTCAATGA+AGG - tig0022040:84714-84733 Msa1396570:intron 40.0%
GTTCAACAACCTTCATTGAG+GGG + tig0022040:84726-84745 None:intergenic 40.0%
GGTTCAACAACCTTCATTGA+GGG + tig0022040:84727-84746 None:intergenic 40.0%
TGGTTCAACAACCTTCATTG+AGG + tig0022040:84728-84747 None:intergenic 40.0%
GTTGTTGAACCACTCAGTAA+AGG - tig0022040:84736-84755 Msa1396570:intron 40.0%
GTTGTTCTCCATAGAGAAGA+AGG - tig0022040:84758-84777 Msa1396570:intron 40.0%
CTTCTTGTCCTTCTTCTCTA+TGG + tig0022040:84769-84788 None:intergenic 40.0%
CATAGAGAAGAAGGACAAGA+AGG - tig0022040:84767-84786 Msa1396570:intron 40.0%
! TTGACCACTGTAGTTTGTCT+CGG - tig0022040:85054-85073 Msa1396570:intron 40.0%
AGAAGAATGCTAGACATGGA+TGG - tig0022040:85275-85294 Msa1396570:intron 40.0%
ATGCTAGACATGGATGGAAT+TGG - tig0022040:85281-85300 Msa1396570:intron 40.0%
ACATGGATGGAATTGGCATA+AGG - tig0022040:85288-85307 Msa1396570:intron 40.0%
! TAACTAACGGTGTTAACCCA+AGG - tig0022040:85360-85379 Msa1396570:intron 40.0%
! AACTAACGGTGTTAACCCAA+GGG - tig0022040:85361-85380 Msa1396570:intron 40.0%
AACTGAAAGAAAACCTGGGT+AGG - tig0022040:85679-85698 Msa1396570:intron 40.0%
TTTGAGAACCGTAGTTCAGT+TGG - tig0022040:85741-85760 Msa1396570:intron 40.0%
ACACTTCCTTTGCTGAAACA+CGG + tig0022040:85855-85874 None:intergenic 40.0%
! CGATCATGACTACATTGGTT+AGG - tig0022040:86083-86102 Msa1396570:intron 40.0%
GGTGAATTGTTTCCCTTTAG+AGG - tig0022040:86187-86206 Msa1396570:CDS 40.0%
GTAACTCAAGTCACTCTCTT+TGG + tig0022040:86267-86286 None:intergenic 40.0%
CATCTATGTTCAAAGCAAGC+AGG + tig0022040:86300-86319 None:intergenic 40.0%
TAAGCTTCTACCGTCAACTT+TGG - tig0022040:86391-86410 Msa1396570:CDS 40.0%
TTGGCGGTTCAACATATCAA+AGG - tig0022040:86957-86976 Msa1396570:CDS 40.0%
AGGTCTTCAAACTCAAGTTC+AGG - tig0022040:86977-86996 Msa1396570:CDS 40.0%
!! AACGGGACTAGTTAGAAATC+TGG - tig0022040:87565-87584 Msa1396570:five_prime_UTR 40.0%
AAAGAAGGCGGCAATGGTAT+GGG - tig0022040:82713-82732 Msa1396570:three_prime_UTR 45.0%
TATTGTACAAGTGGGGTGTG+AGG - tig0022040:82887-82906 Msa1396570:three_prime_UTR 45.0%
ACAGAGCTCCATCAGTCAAA+CGG - tig0022040:83178-83197 Msa1396570:intron 45.0%
TGATCCTCCTACTCCTATGA+TGG + tig0022040:83258-83277 None:intergenic 45.0%
CAGCAGAGATCTTCTTACGA+AGG - tig0022040:83362-83381 Msa1396570:CDS 45.0%
TCTTCTTACGAAGGTCAAGC+TGG - tig0022040:83371-83390 Msa1396570:intron 45.0%
TTGATTGAATTGCAGCTGGG+GGG - tig0022040:83577-83596 Msa1396570:intron 45.0%
GAATTGAGTTTCACTGGTGG+AGG - tig0022040:83636-83655 Msa1396570:intron 45.0%
!! CCCAGGTATTGGTACTAGTA+TGG + tig0022040:83734-83753 None:intergenic 45.0%
AAGAAGGTCGGGATCATCAT+TGG + tig0022040:83880-83899 None:intergenic 45.0%
AGGCAATGTAGAAGAAGGTC+GGG + tig0022040:83891-83910 None:intergenic 45.0%
GAGGCAATGTAGAAGAAGGT+CGG + tig0022040:83892-83911 None:intergenic 45.0%
GAGATAGTACCTGAGTTTCG+AGG + tig0022040:83920-83939 None:intergenic 45.0%
TAGTCTCCCACAAACTTCTC+TGG - tig0022040:84024-84043 Msa1396570:intron 45.0%
CCATCTCCAGAGAAGTTTGT+GGG + tig0022040:84033-84052 None:intergenic 45.0%
TCCATCTCCAGAGAAGTTTG+TGG + tig0022040:84034-84053 None:intergenic 45.0%
TTACAAGGGACGGAATCTTG+GGG + tig0022040:84076-84095 None:intergenic 45.0%
! GCTTGGCACGGATTTTACAA+GGG + tig0022040:84090-84109 None:intergenic 45.0%
ATCCTCGTAGCATTGCTGAA+CGG - tig0022040:84125-84144 Msa1396570:intron 45.0%
! TGGCAAGTTGAAGAAGTTGC+AGG - tig0022040:84275-84294 Msa1396570:intron 45.0%
!! GGAAGCAAAAGTTGGTAGCA+TGG + tig0022040:84334-84353 None:intergenic 45.0%
GGAGAACAACCTTTACTGAG+TGG + tig0022040:84748-84767 None:intergenic 45.0%
ATTGCCGAGACAAACTACAG+TGG + tig0022040:85061-85080 None:intergenic 45.0%
AAATGAGCCAGGAAAGTTGC+AGG - tig0022040:85185-85204 Msa1396570:intron 45.0%
ACTATAGCCTGCAACTTTCC+TGG + tig0022040:85195-85214 None:intergenic 45.0%
AGGAGAATGCCATAACAAGC+TGG - tig0022040:85308-85327 Msa1396570:intron 45.0%
ACAAAGCAATCACCTCCCTT+GGG + tig0022040:85379-85398 None:intergenic 45.0%
AACAAAGCAATCACCTCCCT+TGG + tig0022040:85380-85399 None:intergenic 45.0%
ATTTAGTGAAACCTCAGGGG+AGG - tig0022040:85425-85444 Msa1396570:intron 45.0%
ACAGAGGAAGGCAGAAATGA+AGG - tig0022040:85602-85621 Msa1396570:intron 45.0%
AACCAGAAACAGCGGAAGTA+AGG - tig0022040:85647-85666 Msa1396570:intron 45.0%
AACGACATCACAGAGAAGAG+AGG - tig0022040:85780-85799 Msa1396570:intron 45.0%
ACTAGACCGTGAGAGAGTAA+GGG - tig0022040:85805-85824 Msa1396570:intron 45.0%
TAGTGTCCGTGTTTCAGCAA+AGG - tig0022040:85846-85865 Msa1396570:intron 45.0%
GTACCAGACCAGTTTCAGAA+AGG - tig0022040:85899-85918 Msa1396570:intron 45.0%
!! AGACCTTTCTGAAACTGGTC+TGG + tig0022040:85905-85924 None:intergenic 45.0%
!! GCAACAGACCTTTCTGAAAC+TGG + tig0022040:85910-85929 None:intergenic 45.0%
AAGGTCTGTTGCGAAACAGA+TGG - tig0022040:85918-85937 Msa1396570:intron 45.0%
! CGAGTTTGAAGCAGGACTAT+AGG + tig0022040:85958-85977 None:intergenic 45.0%
TCAGACGATTCTACGATCCA+CGG + tig0022040:86046-86065 None:intergenic 45.0%
AATCGTCTGATACTACTCGG+CGG - tig0022040:86056-86075 Msa1396570:intron 45.0%
GTTCGCGATCATGACTACAT+TGG - tig0022040:86078-86097 Msa1396570:intron 45.0%
! ATGACTACATTGGTTAGGCC+TGG - tig0022040:86088-86107 Msa1396570:intron 45.0%
! TTGTTTCCCTTTAGAGGAGC+CGG - tig0022040:86193-86212 Msa1396570:CDS 45.0%
CTTCTACCGTCAACTTTGGA+TGG - tig0022040:86395-86414 Msa1396570:CDS 45.0%
CTGCTACCATCCAAAGTTGA+CGG + tig0022040:86404-86423 None:intergenic 45.0%
TTCAGACATGCTGGATTTGG+CGG - tig0022040:86941-86960 Msa1396570:CDS 45.0%
! TGTACTTTGTTTGCATCCGC+AGG + tig0022040:87243-87262 None:intergenic 45.0%
TTCTAGACTACGTCTACCAC+AGG + tig0022040:87401-87420 None:intergenic 45.0%
!!! ATTATTATTATTATTAGTTT+GGG + tig0022040:83820-83839 None:intergenic 5.0%
!! TATTATTATTATTATTAGTT+TGG + tig0022040:83821-83840 None:intergenic 5.0%
GAAAGAAGGCGGCAATGGTA+TGG - tig0022040:82712-82731 Msa1396570:three_prime_UTR 50.0%
!! AGCAAGTTGGTGGTTTGGGT+GGG + tig0022040:82981-83000 None:intergenic 50.0%
!! AAGCAAGTTGGTGGTTTGGG+TGG + tig0022040:82982-83001 None:intergenic 50.0%
TCGATCAATCTGTGTGCGAG+CGG + tig0022040:83078-83097 None:intergenic 50.0%
GTATCGTCCACCTTCCTCAT+CGG - tig0022040:83124-83143 Msa1396570:intron 50.0%
TATCGTCCACCTTCCTCATC+GGG - tig0022040:83125-83144 Msa1396570:intron 50.0%
GAAGAAGAACCCGATGAGGA+AGG + tig0022040:83137-83156 None:intergenic 50.0%
GGAAGAAGAAGAACCCGATG+AGG + tig0022040:83141-83160 None:intergenic 50.0%
CTGTTGTTGCTGAGACGAAG+AGG + tig0022040:83162-83181 None:intergenic 50.0%
CAGAGCTCCATCAGTCAAAC+GGG - tig0022040:83179-83198 Msa1396570:intron 50.0%
TGTGAGACCCGTTTGACTGA+TGG + tig0022040:83189-83208 None:intergenic 50.0%
TCAGTCAAACGGGTCTCACA+AGG - tig0022040:83189-83208 Msa1396570:intron 50.0%
CAAACGGGTCTCACAAGGTA+TGG - tig0022040:83194-83213 Msa1396570:intron 50.0%
ACCACTGTGGATGCCATCAT+AGG - tig0022040:83242-83261 Msa1396570:intron 50.0%
TCCTATGATGGCATCCACAG+TGG + tig0022040:83246-83265 None:intergenic 50.0%
GTGGATGCCATCATAGGAGT+AGG - tig0022040:83248-83267 Msa1396570:intron 50.0%
GATGCCATCATAGGAGTAGG+AGG - tig0022040:83251-83270 Msa1396570:intron 50.0%
ATCACGCCTTCTTCCTGGAA+CGG - tig0022040:83274-83293 Msa1396570:intron 50.0%
TCTTACGAAGGTCAAGCTGG+TGG - tig0022040:83374-83393 Msa1396570:intron 50.0%
! GCTTTTCTGACGGAGCAAAG+CGG + tig0022040:83411-83430 None:intergenic 50.0%
GGCTAGATGGTTGAGAAAGC+CGG + tig0022040:83441-83460 None:intergenic 50.0%
GATTATGCATCAGCAGCAGC+TGG - tig0022040:83696-83715 Msa1396570:intron 50.0%
ACTAGTACCAATACCTGGGG+TGG - tig0022040:83735-83754 Msa1396570:intron 50.0%
! CCCACAAACTTCTCTGGAGA+TGG - tig0022040:84030-84049 Msa1396570:intron 50.0%
! GGCACGGATTTTACAAGGGA+CGG + tig0022040:84086-84105 None:intergenic 50.0%
! CGCTTGGCACGGATTTTACA+AGG + tig0022040:84091-84110 None:intergenic 50.0%
TGTAAAATCCGTGCCAAGCG+TGG - tig0022040:84091-84110 Msa1396570:intron 50.0%
AGCAATGCTACGAGGATGAG+TGG + tig0022040:84122-84141 None:intergenic 50.0%
TCCTCGTAGCATTGCTGAAC+GGG - tig0022040:84126-84145 Msa1396570:intron 50.0%
GCAGGACCTTGTACCTAACA+TGG - tig0022040:84293-84312 Msa1396570:intron 50.0%
! TAACGGTGTTAACCCAAGGG+AGG - tig0022040:85364-85383 Msa1396570:intron 50.0%
AATTGCACTAACCTCCCCTG+AGG + tig0022040:85439-85458 None:intergenic 50.0%
TTCACCCACAGTTCAGACAG+AGG - tig0022040:85586-85605 Msa1396570:intron 50.0%
CCTTCCTCTGTCTGAACTGT+GGG + tig0022040:85593-85612 None:intergenic 50.0%
! GACCTTACTTCCGCTGTTTC+TGG + tig0022040:85652-85671 None:intergenic 50.0%
! TCAACTTTTGCTGCCTACCC+AGG + tig0022040:85695-85714 None:intergenic 50.0%
AGTTGAGAACATGTCGCACG+CGG - tig0022040:85709-85728 Msa1396570:intron 50.0%
GAGAACCGTAGTTCAGTTGG+CGG - tig0022040:85744-85763 Msa1396570:intron 50.0%
GACTAGACCGTGAGAGAGTA+AGG - tig0022040:85804-85823 Msa1396570:intron 50.0%
CTAGACCGTGAGAGAGTAAG+GGG - tig0022040:85806-85825 Msa1396570:intron 50.0%
GTTTGCCCCTTACTCTCTCA+CGG + tig0022040:85814-85833 None:intergenic 50.0%
! TGAACTCGCGAGTTTGAAGC+AGG + tig0022040:85966-85985 None:intergenic 50.0%
CAGCAATCCTGGCTGTATGA+CGG - tig0022040:86007-86026 Msa1396570:CDS 50.0%
TGTATGACGGCAAGGAACCA+TGG - tig0022040:86020-86039 Msa1396570:CDS 50.0%
TACTCTCCGGCTCCTCTAAA+GGG + tig0022040:86202-86221 None:intergenic 50.0%
ATACTCTCCGGCTCCTCTAA+AGG + tig0022040:86203-86222 None:intergenic 50.0%
GACCTTGAGAATTGCACCTG+CGG - tig0022040:87224-87243 Msa1396570:five_prime_UTR 50.0%
ATCCGCAGGTGCAATTCTCA+AGG + tig0022040:87229-87248 None:intergenic 50.0%
GGCACTGTGCATAGAAGTCA+AGG - tig0022040:87292-87311 Msa1396570:five_prime_UTR 50.0%
! TGGTTTGGGTGGGGGTTTGA+GGG + tig0022040:82971-82990 None:intergenic 55.0%
!! CAAGTTGGTGGTTTGGGTGG+GGG + tig0022040:82979-82998 None:intergenic 55.0%
!! GCAAGTTGGTGGTTTGGGTG+GGG + tig0022040:82980-82999 None:intergenic 55.0%
GAAGAACCCGATGAGGAAGG+TGG + tig0022040:83134-83153 None:intergenic 55.0%
! GTGGTGTTGAGGAGAGAGCT+AGG + tig0022040:83227-83246 None:intergenic 55.0%
CTCTCTCCTCAACACCACTG+TGG - tig0022040:83229-83248 Msa1396570:intron 55.0%
! TGGCATCCACAGTGGTGTTG+AGG + tig0022040:83238-83257 None:intergenic 55.0%
TCACGCCTTCTTCCTGGAAC+GGG - tig0022040:83275-83294 Msa1396570:intron 55.0%
GTTGTCCCGTTCCAGGAAGA+AGG + tig0022040:83283-83302 None:intergenic 55.0%
!! GGTCAAGCTGGTGGCTTTGA+TGG - tig0022040:83383-83402 Msa1396570:intron 55.0%
! CGGCTGGAGAGCTTTTCTGA+CGG + tig0022040:83421-83440 None:intergenic 55.0%
CGTCAGAAAAGCTCTCCAGC+CGG - tig0022040:83419-83438 Msa1396570:intron 55.0%
AGATGGTTGAGAAAGCCGGC+TGG + tig0022040:83437-83456 None:intergenic 55.0%
TGGGGGGTTCACAATCACGA+GGG - tig0022040:83593-83612 Msa1396570:intron 55.0%
GCATCAGCAGCAGCTGGAAA+TGG - tig0022040:83702-83721 Msa1396570:intron 55.0%
AGTACCAATACCTGGGGTGG+AGG - tig0022040:83738-83757 Msa1396570:intron 55.0%
!! CCTGAGTTTCGAGGGCATTG+AGG + tig0022040:83911-83930 None:intergenic 55.0%
CCTCAATGCCCTCGAAACTC+AGG - tig0022040:83908-83927 Msa1396570:intron 55.0%
ACCCGTTCAGCAATGCTACG+AGG + tig0022040:84130-84149 None:intergenic 55.0%
CCCACAGTTCAGACAGAGGA+AGG - tig0022040:85590-85609 Msa1396570:intron 55.0%
GCCTTCCTCTGTCTGAACTG+TGG + tig0022040:85594-85613 None:intergenic 55.0%
AACCGTAGTTCAGTTGGCGG+TGG - tig0022040:85747-85766 Msa1396570:intron 55.0%
! GATTGCTGGAGGTGTGTCCA+CGG + tig0022040:85995-86014 None:intergenic 55.0%
CATACAGCCAGGATTGCTGG+AGG + tig0022040:86006-86025 None:intergenic 55.0%
CGTCATACAGCCAGGATTGC+TGG + tig0022040:86009-86028 None:intergenic 55.0%
ATCCTGGCTGTATGACGGCA+AGG - tig0022040:86012-86031 Msa1396570:CDS 55.0%
TTCCTTGCCGTCATACAGCC+AGG + tig0022040:86017-86036 None:intergenic 55.0%
GATTCTACGATCCACGGCCA+TGG + tig0022040:86040-86059 None:intergenic 55.0%
! GTGGTTTGGGTGGGGGTTTG+AGG + tig0022040:82972-82991 None:intergenic 60.0%
GGAGGATCACGCCTTCTTCC+TGG - tig0022040:83269-83288 Msa1396570:intron 60.0%
CTGGGGGGTTCACAATCACG+AGG - tig0022040:83592-83611 Msa1396570:intron 60.0%
GGGGGGTTCACAATCACGAG+GGG - tig0022040:83594-83613 Msa1396570:intron 60.0%
ATGAGTGGCGCATCCACGCT+TGG + tig0022040:84107-84126 None:intergenic 60.0%
TGAGAACATGTCGCACGCGG+CGG - tig0022040:85712-85731 Msa1396570:intron 60.0%
CGCCACCGCCAACTGAACTA+CGG + tig0022040:85752-85771 None:intergenic 60.0%
GGACACACCTCCAGCAATCC+TGG - tig0022040:85996-86015 Msa1396570:intron 60.0%
CTGCTGCTGCTGCTGCTGCT+GGG + tig0022040:83327-83346 None:intergenic 65.0%
ATTATCGGGGCCTCCACCCC+AGG + tig0022040:83751-83770 None:intergenic 65.0%
TGGCGCATCCACGCTTGGCA+CGG + tig0022040:84102-84121 None:intergenic 65.0%
GTTCAGTTGGCGGTGGCGCA+AGG - tig0022040:85754-85773 Msa1396570:intron 65.0%
TCGCGAGTTCAAACCCGCCG+TGG - tig0022040:85975-85994 Msa1396570:intron 65.0%
! TGCTGGAGGTGTGTCCACGG+CGG + tig0022040:85992-86011 None:intergenic 65.0%
ACGGCAAGGAACCATGGCCG+TGG - tig0022040:86026-86045 Msa1396570:CDS 65.0%
GCTGCTGCTGCTGCTGCTGC+TGG + tig0022040:83328-83347 None:intergenic 70.0%
GGGGCCTCCACCCCAGGTAT+TGG + tig0022040:83745-83764 None:intergenic 70.0%
CAGTTGGCGGTGGCGCAAGG+AGG - tig0022040:85757-85776 Msa1396570:intron 70.0%
! GCTGGAGGTGTGTCCACGGC+GGG + tig0022040:85991-86010 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0022040 gene 82712 87606 82712 ID=Msa1396570;Name=Msa1396570
tig0022040 mRNA 82712 87606 82712 ID=Msa1396570-mRNA-1;Parent=Msa1396570;Name=Msa1396570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=410|0.66|0.85|0.85|1|1|7|341|391
tig0022040 exon 82712 83106 82712 ID=Msa1396570-mRNA-1:exon:15577;Parent=Msa1396570-mRNA-1
tig0022040 exon 83320 83388 83320 ID=Msa1396570-mRNA-1:exon:15576;Parent=Msa1396570-mRNA-1
tig0022040 exon 84298 84450 84298 ID=Msa1396570-mRNA-1:exon:15575;Parent=Msa1396570-mRNA-1
tig0022040 exon 85998 86063 85998 ID=Msa1396570-mRNA-1:exon:15574;Parent=Msa1396570-mRNA-1
tig0022040 exon 86171 86296 86171 ID=Msa1396570-mRNA-1:exon:15573;Parent=Msa1396570-mRNA-1
tig0022040 exon 86389 86726 86389 ID=Msa1396570-mRNA-1:exon:15572;Parent=Msa1396570-mRNA-1
tig0022040 exon 86827 87606 86827 ID=Msa1396570-mRNA-1:exon:15571;Parent=Msa1396570-mRNA-1
tig0022040 five_prime_UTR 87197 87606 87197 ID=Msa1396570-mRNA-1:five_prime_utr;Parent=Msa1396570-mRNA-1
tig0022040 CDS 86827 87196 86827 ID=Msa1396570-mRNA-1:cds;Parent=Msa1396570-mRNA-1
tig0022040 CDS 86389 86726 86389 ID=Msa1396570-mRNA-1:cds;Parent=Msa1396570-mRNA-1
tig0022040 CDS 86171 86296 86171 ID=Msa1396570-mRNA-1:cds;Parent=Msa1396570-mRNA-1
tig0022040 CDS 85998 86063 85998 ID=Msa1396570-mRNA-1:cds;Parent=Msa1396570-mRNA-1
tig0022040 CDS 84298 84450 84298 ID=Msa1396570-mRNA-1:cds;Parent=Msa1396570-mRNA-1
tig0022040 CDS 83320 83388 83320 ID=Msa1396570-mRNA-1:cds;Parent=Msa1396570-mRNA-1
tig0022040 CDS 83053 83106 83053 ID=Msa1396570-mRNA-1:cds;Parent=Msa1396570-mRNA-1
tig0022040 three_prime_UTR 82712 83052 82712 ID=Msa1396570-mRNA-1:three_prime_utr;Parent=Msa1396570-mRNA-1
Gene Sequence

>Msa1396570

ATGTATCGTCCACCTTCCTCATCGGGTTCTTCTTCTTCCTCTTCGTCTCAGCAACAACAGAGCTCCATCAGTCAAACGGGTCTCACAAGGTATGGTTCTGCACCTAGCTCTCTCCTCAACACCACTGTGGATGCCATCATAGGAGTAGGAGGATCACGCCTTCTTCCTGGAACGGGACAACATTATTTCTCTGATGACTCTACCCAGCAGCAGCAGCAGCAGCAGCAGCACCAACAACAACAGCAGAGATCTTCTTACGAAGGTCAAGCTGGTGGCTTTGATGGATCCGCTTTGCTCCGTCAGAAAAGCTCTCCAGCCGGCTTTCTCAACCATCTAGCCACTCTCAATCATAATAACAATAACAATAACGCTGGGGGGTTCACAATCACGAGGGGCAATTCAAGATTGAAGTCTGAATTGAGTTTCACTGGTGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGTTGTTGATTATGCATCAGCAGCAGCTGGAAATGGATCATTCCATACTAGTACCAATACCTGGGGTGGAGGCCCCGATAATAATAACAACAACAACTCAAATTCCATAGTATTTTCTTCTTCTCAAACCCAAACTAATAATAATAATAATAATAATAGTAGTAAGAAGCGTTCTAGTAGAACTGACACCAATGATGATCCCGACCTTCTTCTACATTGCCTCAATGCCCTCGAAACTCAGTATAGTCTCCCACAAACTTCTCTGGAGATGGACCAGCTTATGCATAATATTCCCCAAGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGTGGATGCGCCACTCATCCTCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAGTTGCAGGACCTTGTACCTAACATGGATAAGGAAGTGTTCAAGAAGCACAAGTGTTTTCACAGTACCAGACCAGTTTCAGAAAGGTCTGTTGCGAAACAGATGGCTCAAATTTGTGATCCTATAGTCCTGCTTCAAACTCGCGAGTTCAAACCCGCCGTGGACACACCTCCAGCAATCCTGGCTCAAACAAGTTATTCAGACATGCTGGATTTGGCGGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGACCTTGAGAATTGCACCTGCGGATGCAAACAAAGTACATAA
Protein sequence

>Msa1396570

MYRPPSSSGSSSSSSSQQQQSSISQTGLTRYGSAPSSLLNTTVDAIIGVGGSRLLPGTGQHYFSDDSTQQQQQQQQHQQQQQRSSYEGQAGGFDGSALLRQKSSPAGFLNHLATLNHNNNNNNAGGFTITRGNSRLKSELSFTGGGQECLSRISENVVDYASAAAGNGSFHTSTNTWGGGPDNNNNNNSNSIVFSSSQTQTNNNNNNNSSKKRSSRTDTNDDPDLLLHCLNALETQYSLPQTSLEMDQLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKEVFKKHKCFHSTRPVSERSVAKQMAQICDPIVLLQTREFKPAVDTPPAILAQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST*