Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286880 | XP_003595539.1 | 84.084 | 333 | 7 | 1 | 1 | 287 | 248 | 580 | 0.0 | 548 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286880 | sp|Q9C757|INT2_ARATH | 61.994 | 321 | 73 | 2 | 2 | 274 | 251 | 570 | 6.30e-136 | 399 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286880 | G7IGM5 | 84.084 | 333 | 7 | 1 | 1 | 287 | 248 | 580 | 0.0 | 548 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0105340 | Msa0286880 | 0.802090 | 6.615635e-49 | -8.615850e-47 |
Msa0205400 | Msa0286880 | 0.856145 | 3.920670e-62 | -8.615850e-47 |
Msa0248600 | Msa0286880 | 0.855041 | 8.232830e-62 | -8.615850e-47 |
Msa0286860 | Msa0286880 | 0.993140 | 1.013222e-197 | -8.615850e-47 |
Msa0286880 | Msa0286890 | 0.846382 | 2.249000e-59 | -8.615850e-47 |
Msa0286880 | Msa0286910 | 0.846271 | 2.411704e-59 | -8.615850e-47 |
Msa0286880 | Msa0325510 | 0.895057 | 1.375215e-75 | -8.615850e-47 |
Msa0286880 | Msa0371420 | -0.816916 | 4.321190e-52 | -8.615850e-47 |
Msa0286880 | Msa0419620 | -0.810750 | 9.867867e-51 | -8.615850e-47 |
Msa0286880 | Msa0448400 | 0.830003 | 3.749604e-55 | -8.615850e-47 |
Msa0286880 | Msa0465680 | -0.826504 | 2.616466e-54 | -8.615850e-47 |
Msa0286880 | Msa0498920 | 0.812229 | 4.708116e-51 | -8.615850e-47 |
Msa0286880 | Msa0508140 | 0.820850 | 5.514532e-53 | -8.615850e-47 |
Msa0286880 | Msa0616910 | 0.817096 | 3.935942e-52 | -8.615850e-47 |
Msa0286880 | Msa0626230 | 0.803260 | 3.794061e-49 | -8.615850e-47 |
Msa0286880 | Msa0796460 | 0.816934 | 4.280323e-52 | -8.615850e-47 |
Msa0286880 | Msa0807050 | 0.847636 | 1.019896e-59 | -8.615850e-47 |
Msa0286880 | Msa0832990 | 0.846837 | 1.689782e-59 | -8.615850e-47 |
Msa0286880 | Msa0900200 | 0.800365 | 1.491540e-48 | -8.615850e-47 |
Msa0286880 | Msa1000020 | 0.804100 | 2.539939e-49 | -8.615850e-47 |
Msa0286880 | Msa1043870 | 0.801725 | 7.862427e-49 | -8.615850e-47 |
Msa0286880 | Msa1080790 | 0.860394 | 2.129996e-63 | -8.615850e-47 |
Msa0286880 | Msa1118930 | 0.859182 | 4.935506e-63 | -8.615850e-47 |
Msa0286880 | Msa1132950 | 0.850989 | 1.188129e-60 | -8.615850e-47 |
Msa0286880 | Msa1370630 | 0.848054 | 7.826360e-60 | -8.615850e-47 |
Msa0286880 | Msa1370910 | -0.872596 | 2.816243e-67 | -8.615850e-47 |
Msa0286880 | Msa1396570 | -0.806173 | 9.353833e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286880 | MtrunA17_Chr2g0303731 | 84.084 | 333 | 7 | 1 | 1 | 287 | 248 | 580 | 0.0 | 548 |
Msa0286880 | MtrunA17_Chr8g0376631 | 73.252 | 329 | 41 | 2 | 1 | 283 | 248 | 575 | 4.39e-159 | 455 |
Msa0286880 | MtrunA17_Chr8g0376611 | 66.149 | 322 | 64 | 2 | 1 | 278 | 181 | 501 | 9.01e-142 | 408 |
Msa0286880 | MtrunA17_Chr2g0303701 | 59.202 | 326 | 81 | 4 | 1 | 278 | 248 | 569 | 5.05e-121 | 358 |
Msa0286880 | MtrunA17_Chr8g0376601 | 57.680 | 319 | 89 | 2 | 2 | 275 | 249 | 566 | 1.74e-120 | 356 |
Msa0286880 | MtrunA17_Chr2g0290181 | 48.123 | 293 | 105 | 2 | 23 | 269 | 274 | 565 | 1.09e-87 | 272 |
Msa0286880 | MtrunA17_Chr1g0213611 | 49.296 | 284 | 111 | 3 | 4 | 287 | 300 | 550 | 7.31e-85 | 264 |
Msa0286880 | MtrunA17_Chr5g0434251 | 74.359 | 156 | 39 | 1 | 123 | 278 | 3 | 157 | 6.25e-84 | 249 |
Msa0286880 | MtrunA17_Chr7g0214451 | 48.097 | 289 | 110 | 4 | 1 | 286 | 249 | 500 | 3.78e-82 | 256 |
Msa0286880 | MtrunA17_Chr5g0434261 | 45.283 | 318 | 83 | 3 | 2 | 274 | 56 | 327 | 4.17e-82 | 250 |
Msa0286880 | MtrunA17_Chr1g0213631 | 47.887 | 284 | 116 | 3 | 2 | 284 | 204 | 456 | 2.45e-79 | 247 |
Msa0286880 | MtrunA17_Chr2g0290161 | 46.416 | 293 | 110 | 2 | 23 | 269 | 181 | 472 | 1.54e-78 | 246 |
Msa0286880 | MtrunA17_Chr3g0121674 | 44.211 | 285 | 120 | 5 | 4 | 287 | 61 | 307 | 6.15e-77 | 236 |
Msa0286880 | MtrunA17_Chr6g0450291 | 75.610 | 123 | 30 | 0 | 1 | 123 | 1 | 123 | 3.60e-55 | 176 |
Msa0286880 | MtrunA17_Chr6g0450281 | 75.610 | 123 | 30 | 0 | 1 | 123 | 1 | 123 | 1.14e-54 | 176 |
Msa0286880 | MtrunA17_Chr6g0450271 | 75.610 | 123 | 30 | 0 | 1 | 123 | 57 | 179 | 2.13e-54 | 177 |
Msa0286880 | MtrunA17_Chr6g0450241 | 74.797 | 123 | 31 | 0 | 1 | 123 | 1 | 123 | 2.56e-54 | 174 |
Msa0286880 | MtrunA17_Chr5g0434241 | 79.208 | 101 | 21 | 0 | 1 | 101 | 1 | 101 | 1.09e-51 | 165 |
Msa0286880 | MtrunA17_Chr4g0021771 | 35.391 | 243 | 121 | 4 | 22 | 263 | 298 | 505 | 1.90e-32 | 125 |
Msa0286880 | MtrunA17_Chr2g0282031 | 33.603 | 247 | 128 | 4 | 17 | 262 | 291 | 502 | 1.68e-29 | 117 |
Msa0286880 | MtrunA17_Chr5g0394341 | 30.337 | 267 | 144 | 7 | 16 | 278 | 274 | 502 | 3.01e-28 | 113 |
Msa0286880 | MtrunA17_Chr7g0259221 | 32.540 | 252 | 131 | 7 | 11 | 261 | 263 | 476 | 1.43e-27 | 111 |
Msa0286880 | MtrunA17_Chr7g0273261 | 30.888 | 259 | 140 | 5 | 3 | 261 | 19 | 238 | 2.77e-27 | 106 |
Msa0286880 | MtrunA17_Chr7g0259471 | 33.058 | 242 | 122 | 6 | 21 | 260 | 270 | 473 | 3.49e-27 | 110 |
Msa0286880 | MtrunA17_Chr7g0250881 | 31.602 | 231 | 121 | 3 | 30 | 260 | 309 | 502 | 4.81e-27 | 109 |
Msa0286880 | MtrunA17_Chr4g0039651 | 30.924 | 249 | 134 | 3 | 10 | 258 | 288 | 498 | 1.01e-26 | 108 |
Msa0286880 | MtrunA17_Chr1g0155221 | 28.405 | 257 | 146 | 5 | 7 | 258 | 263 | 486 | 1.06e-26 | 108 |
Msa0286880 | MtrunA17_Chr1g0205671 | 30.000 | 250 | 134 | 6 | 27 | 272 | 284 | 496 | 1.37e-26 | 108 |
Msa0286880 | MtrunA17_Chr3g0144361 | 30.252 | 238 | 136 | 3 | 20 | 257 | 281 | 488 | 1.05e-25 | 106 |
Msa0286880 | MtrunA17_Chr6g0457781 | 31.466 | 232 | 122 | 3 | 30 | 261 | 349 | 543 | 1.77e-25 | 105 |
Msa0286880 | MtrunA17_Chr8g0373181 | 30.769 | 260 | 139 | 8 | 4 | 257 | 258 | 482 | 2.09e-25 | 105 |
Msa0286880 | MtrunA17_Chr4g0036021 | 28.077 | 260 | 151 | 4 | 17 | 276 | 274 | 497 | 5.36e-25 | 103 |
Msa0286880 | MtrunA17_Chr1g0205691 | 29.740 | 269 | 153 | 6 | 16 | 283 | 274 | 507 | 1.38e-24 | 102 |
Msa0286880 | MtrunA17_Chr4g0034681 | 27.306 | 271 | 143 | 5 | 17 | 278 | 278 | 503 | 1.45e-24 | 102 |
Msa0286880 | MtrunA17_Chr3g0144261 | 28.571 | 266 | 127 | 5 | 8 | 254 | 490 | 711 | 1.57e-24 | 103 |
Msa0286880 | MtrunA17_Chr1g0205681 | 28.063 | 253 | 141 | 6 | 24 | 272 | 282 | 497 | 1.76e-24 | 102 |
Msa0286880 | MtrunA17_Chr8g0373531 | 30.242 | 248 | 141 | 4 | 17 | 263 | 269 | 485 | 3.48e-24 | 101 |
Msa0286880 | MtrunA17_Chr3g0146061 | 30.705 | 241 | 124 | 4 | 23 | 254 | 515 | 721 | 3.66e-24 | 102 |
Msa0286880 | MtrunA17_Chr5g0432581 | 30.364 | 247 | 142 | 3 | 17 | 263 | 269 | 485 | 6.12e-24 | 100 |
Msa0286880 | MtrunA17_Chr8g0370151 | 26.415 | 265 | 141 | 4 | 23 | 276 | 136 | 357 | 4.12e-23 | 97.4 |
Msa0286880 | MtrunA17_Chr7g0273281 | 28.627 | 255 | 145 | 5 | 3 | 257 | 275 | 492 | 7.94e-23 | 97.8 |
Msa0286880 | MtrunA17_Chr4g0032021 | 26.459 | 257 | 151 | 3 | 1 | 257 | 333 | 551 | 8.79e-23 | 97.8 |
Msa0286880 | MtrunA17_Chr3g0128081 | 26.236 | 263 | 162 | 5 | 17 | 277 | 274 | 506 | 1.42e-22 | 97.1 |
Msa0286880 | MtrunA17_Chr4g0065311 | 29.348 | 276 | 151 | 10 | 1 | 272 | 255 | 490 | 2.12e-22 | 96.7 |
Msa0286880 | MtrunA17_Chr3g0119401 | 28.137 | 263 | 148 | 4 | 3 | 263 | 312 | 535 | 2.68e-22 | 96.3 |
Msa0286880 | MtrunA17_Chr8g0390141 | 28.244 | 262 | 157 | 5 | 17 | 278 | 277 | 507 | 4.39e-22 | 95.9 |
Msa0286880 | MtrunA17_Chr5g0403831 | 31.120 | 241 | 136 | 5 | 23 | 262 | 286 | 497 | 1.37e-21 | 94.4 |
Msa0286880 | MtrunA17_Chr4g0066581 | 28.235 | 255 | 145 | 5 | 11 | 264 | 273 | 490 | 3.14e-21 | 93.2 |
Msa0286880 | MtrunA17_Chr5g0417611 | 27.138 | 269 | 163 | 6 | 18 | 283 | 276 | 514 | 3.61e-21 | 93.2 |
Msa0286880 | MtrunA17_Chr8g0390521 | 28.807 | 243 | 142 | 1 | 17 | 259 | 259 | 470 | 3.83e-21 | 92.8 |
Msa0286880 | MtrunA17_Chr3g0128171 | 26.792 | 265 | 165 | 6 | 5 | 269 | 216 | 451 | 1.93e-20 | 90.9 |
Msa0286880 | MtrunA17_Chr2g0286721 | 29.365 | 252 | 138 | 7 | 11 | 260 | 270 | 483 | 1.95e-20 | 90.9 |
Msa0286880 | MtrunA17_Chr3g0085971 | 23.970 | 267 | 169 | 6 | 16 | 279 | 272 | 507 | 2.49e-20 | 90.5 |
Msa0286880 | MtrunA17_Chr5g0419321 | 26.210 | 248 | 140 | 4 | 16 | 254 | 516 | 729 | 3.05e-20 | 90.5 |
Msa0286880 | MtrunA17_Chr8g0373191 | 26.820 | 261 | 152 | 6 | 7 | 262 | 233 | 459 | 3.42e-20 | 90.1 |
Msa0286880 | MtrunA17_Chr6g0485661 | 28.571 | 231 | 135 | 3 | 20 | 250 | 300 | 500 | 3.47e-20 | 90.1 |
Msa0286880 | MtrunA17_Chr4g0048051 | 30.385 | 260 | 149 | 7 | 18 | 277 | 275 | 502 | 1.19e-19 | 88.6 |
Msa0286880 | MtrunA17_Chr4g0048411 | 25.373 | 268 | 168 | 5 | 18 | 283 | 275 | 512 | 1.35e-19 | 88.6 |
Msa0286880 | MtrunA17_Chr3g0115721 | 28.846 | 260 | 154 | 7 | 21 | 279 | 277 | 506 | 1.77e-19 | 88.2 |
Msa0286880 | MtrunA17_Chr4g0065324 | 29.078 | 282 | 158 | 10 | 1 | 279 | 263 | 505 | 1.97e-19 | 87.8 |
Msa0286880 | MtrunA17_Chr5g0407441 | 26.210 | 248 | 140 | 4 | 16 | 254 | 490 | 703 | 3.79e-19 | 87.4 |
Msa0286880 | MtrunA17_Chr3g0115751 | 25.283 | 265 | 165 | 5 | 16 | 280 | 277 | 508 | 3.96e-19 | 87.0 |
Msa0286880 | MtrunA17_Chr3g0078991 | 28.244 | 262 | 155 | 6 | 16 | 276 | 275 | 504 | 7.56e-19 | 86.3 |
Msa0286880 | MtrunA17_Chr4g0065351 | 26.894 | 264 | 150 | 8 | 21 | 279 | 117 | 342 | 1.76e-18 | 84.3 |
Msa0286880 | MtrunA17_Chr3g0078971 | 28.938 | 273 | 156 | 9 | 1 | 272 | 260 | 495 | 1.80e-18 | 85.1 |
Msa0286880 | MtrunA17_Chr3g0115731 | 28.063 | 253 | 147 | 7 | 21 | 272 | 256 | 474 | 7.89e-18 | 83.2 |
Msa0286880 | MtrunA17_Chr4g0004821 | 28.405 | 257 | 141 | 6 | 2 | 257 | 255 | 469 | 3.26e-17 | 81.3 |
Msa0286880 | MtrunA17_Chr6g0486021 | 28.205 | 234 | 130 | 3 | 27 | 260 | 291 | 486 | 9.31e-17 | 80.1 |
Msa0286880 | MtrunA17_Chr7g0257631 | 29.707 | 239 | 125 | 9 | 37 | 271 | 330 | 529 | 2.13e-16 | 79.0 |
Msa0286880 | MtrunA17_Chr5g0445601 | 29.091 | 275 | 151 | 10 | 1 | 271 | 261 | 495 | 4.63e-16 | 78.2 |
Msa0286880 | MtrunA17_Chr3g0115741 | 25.292 | 257 | 157 | 6 | 16 | 269 | 275 | 499 | 5.53e-16 | 77.8 |
Msa0286880 | MtrunA17_Chr5g0404181 | 33.607 | 122 | 71 | 3 | 144 | 257 | 9 | 128 | 4.06e-15 | 70.9 |
Msa0286880 | MtrunA17_Chr3g0115781 | 25.882 | 255 | 158 | 7 | 16 | 269 | 274 | 498 | 2.85e-14 | 72.8 |
Msa0286880 | MtrunA17_Chr3g0115711 | 23.256 | 258 | 160 | 6 | 21 | 274 | 276 | 499 | 1.18e-13 | 70.9 |
Msa0286880 | MtrunA17_Chr3g0078791 | 23.770 | 244 | 128 | 6 | 18 | 256 | 220 | 410 | 1.74e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286880 | AT1G30220.1 | 61.994 | 321 | 73 | 2 | 2 | 274 | 251 | 570 | 6.41e-137 | 399 |
Msa0286880 | AT4G16480.2 | 47.751 | 289 | 100 | 2 | 23 | 261 | 274 | 561 | 1.02e-88 | 275 |
Msa0286880 | AT4G16480.3 | 47.751 | 289 | 100 | 2 | 23 | 261 | 274 | 561 | 1.02e-88 | 275 |
Msa0286880 | AT4G16480.1 | 47.751 | 289 | 100 | 2 | 23 | 261 | 274 | 561 | 1.02e-88 | 275 |
Msa0286880 | AT2G35740.1 | 43.770 | 313 | 122 | 3 | 2 | 261 | 249 | 560 | 3.09e-87 | 271 |
Msa0286880 | AT2G43330.1 | 49.462 | 279 | 110 | 3 | 2 | 279 | 251 | 499 | 1.52e-84 | 263 |
Msa0286880 | AT2G18480.1 | 36.402 | 239 | 119 | 4 | 22 | 259 | 276 | 482 | 1.69e-32 | 125 |
Msa0286880 | AT2G48020.2 | 32.143 | 252 | 132 | 6 | 11 | 261 | 249 | 462 | 3.62e-31 | 121 |
Msa0286880 | AT2G48020.1 | 32.143 | 252 | 132 | 6 | 11 | 261 | 249 | 462 | 3.62e-31 | 121 |
Msa0286880 | AT2G20780.1 | 31.449 | 283 | 136 | 6 | 4 | 263 | 260 | 507 | 1.61e-29 | 117 |
Msa0286880 | AT2G20780.2 | 31.449 | 283 | 136 | 6 | 4 | 263 | 202 | 449 | 2.21e-29 | 116 |
Msa0286880 | AT3G51490.3 | 32.540 | 252 | 127 | 4 | 16 | 258 | 451 | 668 | 1.29e-27 | 112 |
Msa0286880 | AT3G51490.2 | 32.540 | 252 | 127 | 4 | 16 | 258 | 501 | 718 | 1.38e-27 | 112 |
Msa0286880 | AT5G18840.1 | 33.333 | 252 | 127 | 8 | 15 | 263 | 268 | 481 | 1.97e-27 | 111 |
Msa0286880 | AT3G05150.2 | 31.698 | 265 | 140 | 8 | 11 | 273 | 256 | 481 | 3.01e-27 | 110 |
Msa0286880 | AT3G05150.1 | 32.143 | 252 | 131 | 7 | 11 | 260 | 256 | 469 | 3.96e-27 | 110 |
Msa0286880 | AT3G05150.3 | 32.143 | 252 | 131 | 7 | 11 | 260 | 256 | 469 | 3.96e-27 | 110 |
Msa0286880 | AT4G35300.5 | 32.308 | 260 | 127 | 4 | 7 | 254 | 301 | 523 | 1.45e-26 | 108 |
Msa0286880 | AT4G35300.9 | 32.308 | 260 | 127 | 4 | 7 | 254 | 488 | 710 | 3.07e-26 | 108 |
Msa0286880 | AT4G35300.2 | 32.308 | 260 | 127 | 4 | 7 | 254 | 488 | 710 | 3.07e-26 | 108 |
Msa0286880 | AT4G35300.3 | 32.308 | 260 | 127 | 4 | 7 | 254 | 488 | 710 | 3.07e-26 | 108 |
Msa0286880 | AT4G35300.4 | 32.308 | 260 | 127 | 4 | 7 | 254 | 498 | 720 | 3.21e-26 | 108 |
Msa0286880 | AT4G35300.8 | 32.308 | 260 | 127 | 4 | 7 | 254 | 498 | 720 | 3.21e-26 | 108 |
Msa0286880 | AT4G35300.6 | 32.308 | 260 | 127 | 4 | 7 | 254 | 498 | 720 | 3.21e-26 | 108 |
Msa0286880 | AT4G35300.11 | 32.308 | 260 | 127 | 4 | 7 | 254 | 498 | 720 | 3.21e-26 | 108 |
Msa0286880 | AT4G35300.1 | 32.308 | 260 | 127 | 4 | 7 | 254 | 498 | 720 | 3.21e-26 | 108 |
Msa0286880 | AT4G35300.10 | 32.308 | 260 | 127 | 4 | 7 | 254 | 498 | 720 | 3.21e-26 | 108 |
Msa0286880 | AT4G35300.7 | 32.308 | 260 | 127 | 4 | 7 | 254 | 498 | 720 | 3.21e-26 | 108 |
Msa0286880 | AT4G36670.1 | 29.478 | 268 | 147 | 5 | 1 | 262 | 250 | 481 | 4.06e-26 | 107 |
Msa0286880 | AT1G75220.1 | 28.846 | 260 | 152 | 5 | 4 | 261 | 259 | 487 | 6.38e-26 | 107 |
Msa0286880 | AT2G16130.1 | 31.120 | 241 | 137 | 3 | 20 | 260 | 278 | 489 | 7.39e-26 | 107 |
Msa0286880 | AT3G18830.1 | 28.462 | 260 | 144 | 4 | 20 | 276 | 288 | 508 | 1.99e-25 | 105 |
Msa0286880 | AT5G26340.1 | 28.679 | 265 | 152 | 5 | 24 | 284 | 282 | 513 | 2.59e-25 | 105 |
Msa0286880 | AT2G16120.1 | 30.000 | 240 | 139 | 3 | 20 | 259 | 278 | 488 | 9.88e-25 | 103 |
Msa0286880 | AT3G05155.1 | 28.740 | 254 | 141 | 6 | 7 | 258 | 241 | 456 | 1.56e-24 | 102 |
Msa0286880 | AT5G27360.2 | 31.418 | 261 | 142 | 5 | 3 | 263 | 144 | 367 | 3.37e-24 | 100 |
Msa0286880 | AT5G27360.5 | 31.418 | 261 | 142 | 5 | 3 | 263 | 144 | 367 | 3.37e-24 | 100 |
Msa0286880 | AT1G54730.2 | 28.235 | 255 | 146 | 5 | 3 | 257 | 245 | 462 | 3.69e-24 | 101 |
Msa0286880 | AT3G51490.1 | 32.245 | 245 | 129 | 4 | 16 | 258 | 501 | 710 | 4.74e-24 | 102 |
Msa0286880 | AT5G27360.1 | 31.418 | 261 | 142 | 5 | 3 | 263 | 248 | 471 | 5.88e-24 | 101 |
Msa0286880 | AT5G27360.3 | 31.418 | 261 | 142 | 5 | 3 | 263 | 296 | 519 | 6.02e-24 | 101 |
Msa0286880 | AT3G05960.1 | 27.305 | 282 | 169 | 6 | 5 | 284 | 259 | 506 | 7.99e-24 | 101 |
Msa0286880 | AT5G59250.1 | 29.614 | 233 | 127 | 2 | 25 | 257 | 358 | 553 | 1.92e-23 | 100 |
Msa0286880 | AT3G03090.1 | 29.218 | 243 | 134 | 3 | 16 | 258 | 296 | 500 | 4.72e-23 | 99.0 |
Msa0286880 | AT5G17010.1 | 28.571 | 252 | 142 | 3 | 7 | 258 | 287 | 500 | 5.05e-23 | 98.6 |
Msa0286880 | AT5G17010.3 | 28.571 | 252 | 142 | 3 | 7 | 258 | 287 | 500 | 5.05e-23 | 98.6 |
Msa0286880 | AT5G17010.4 | 28.571 | 252 | 142 | 3 | 7 | 258 | 287 | 500 | 5.05e-23 | 98.6 |
Msa0286880 | AT5G26250.1 | 28.000 | 275 | 166 | 5 | 5 | 279 | 260 | 502 | 1.11e-22 | 97.8 |
Msa0286880 | AT5G16150.2 | 31.169 | 231 | 122 | 3 | 30 | 260 | 349 | 542 | 1.86e-22 | 97.4 |
Msa0286880 | AT5G16150.1 | 31.169 | 231 | 122 | 3 | 30 | 260 | 349 | 542 | 1.86e-22 | 97.4 |
Msa0286880 | AT5G16150.3 | 31.169 | 231 | 122 | 3 | 30 | 260 | 349 | 542 | 1.86e-22 | 97.4 |
Msa0286880 | AT1G20840.2 | 31.783 | 258 | 122 | 5 | 23 | 269 | 507 | 721 | 3.49e-22 | 96.7 |
Msa0286880 | AT1G20840.1 | 31.783 | 258 | 122 | 5 | 23 | 269 | 507 | 721 | 3.49e-22 | 96.7 |
Msa0286880 | AT1G19450.1 | 28.788 | 264 | 147 | 6 | 4 | 261 | 260 | 488 | 6.03e-22 | 95.5 |
Msa0286880 | AT3G05400.1 | 28.627 | 255 | 142 | 6 | 3 | 257 | 242 | 456 | 6.38e-21 | 92.4 |
Msa0286880 | AT3G05400.2 | 28.627 | 255 | 142 | 6 | 3 | 257 | 222 | 436 | 6.74e-21 | 92.4 |
Msa0286880 | AT1G79820.2 | 29.297 | 256 | 140 | 5 | 2 | 257 | 273 | 487 | 6.84e-21 | 92.4 |
Msa0286880 | AT1G79820.1 | 29.297 | 256 | 140 | 5 | 2 | 257 | 273 | 487 | 6.84e-21 | 92.4 |
Msa0286880 | AT1G05030.1 | 31.923 | 260 | 136 | 5 | 6 | 263 | 300 | 520 | 1.52e-20 | 91.7 |
Msa0286880 | AT4G21480.1 | 27.953 | 254 | 151 | 5 | 18 | 269 | 273 | 496 | 1.60e-20 | 91.7 |
Msa0286880 | AT1G05030.2 | 31.923 | 260 | 136 | 5 | 6 | 263 | 248 | 468 | 2.94e-20 | 90.5 |
Msa0286880 | AT1G11260.1 | 27.206 | 272 | 163 | 7 | 16 | 284 | 274 | 513 | 3.59e-20 | 90.5 |
Msa0286880 | AT1G08930.1 | 27.615 | 239 | 135 | 4 | 27 | 264 | 294 | 495 | 3.77e-20 | 90.5 |
Msa0286880 | AT1G08930.2 | 27.615 | 239 | 135 | 4 | 27 | 264 | 294 | 495 | 3.77e-20 | 90.5 |
Msa0286880 | AT1G07340.1 | 30.153 | 262 | 147 | 6 | 13 | 272 | 267 | 494 | 3.94e-20 | 90.5 |
Msa0286880 | AT5G27350.1 | 30.588 | 255 | 140 | 5 | 3 | 257 | 244 | 461 | 1.53e-19 | 88.6 |
Msa0286880 | AT3G05160.1 | 25.969 | 258 | 149 | 5 | 4 | 260 | 238 | 454 | 1.65e-18 | 85.5 |
Msa0286880 | AT3G05160.3 | 25.969 | 258 | 149 | 5 | 4 | 260 | 189 | 405 | 1.99e-18 | 85.1 |
Msa0286880 | AT3G05160.2 | 25.969 | 258 | 149 | 5 | 4 | 260 | 189 | 405 | 1.99e-18 | 85.1 |
Msa0286880 | AT4G02050.2 | 27.037 | 270 | 156 | 6 | 21 | 286 | 280 | 512 | 2.27e-18 | 85.1 |
Msa0286880 | AT4G02050.1 | 27.037 | 270 | 156 | 6 | 21 | 286 | 280 | 512 | 2.27e-18 | 85.1 |
Msa0286880 | AT4G04750.3 | 29.825 | 228 | 124 | 6 | 30 | 257 | 321 | 512 | 7.81e-18 | 83.6 |
Msa0286880 | AT4G04760.3 | 29.565 | 230 | 126 | 6 | 30 | 259 | 214 | 407 | 1.23e-17 | 82.8 |
Msa0286880 | AT4G04750.1 | 29.258 | 229 | 126 | 5 | 30 | 258 | 277 | 469 | 1.35e-17 | 82.8 |
Msa0286880 | AT4G04750.2 | 29.258 | 229 | 126 | 5 | 30 | 258 | 277 | 469 | 1.35e-17 | 82.8 |
Msa0286880 | AT3G05165.3 | 26.357 | 258 | 148 | 5 | 4 | 260 | 247 | 463 | 1.35e-17 | 82.8 |
Msa0286880 | AT3G05165.2 | 26.357 | 258 | 148 | 5 | 4 | 260 | 247 | 463 | 1.35e-17 | 82.8 |
Msa0286880 | AT3G05165.1 | 26.357 | 258 | 148 | 5 | 4 | 260 | 247 | 463 | 1.35e-17 | 82.8 |
Msa0286880 | AT4G04760.1 | 29.437 | 231 | 127 | 6 | 30 | 260 | 273 | 467 | 1.88e-17 | 82.4 |
Msa0286880 | AT1G54730.5 | 25.098 | 255 | 133 | 5 | 3 | 257 | 245 | 441 | 3.87e-17 | 81.3 |
Msa0286880 | AT1G08920.1 | 28.571 | 231 | 129 | 4 | 30 | 260 | 271 | 465 | 6.57e-17 | 80.9 |
Msa0286880 | AT1G08920.2 | 28.139 | 231 | 137 | 5 | 30 | 260 | 271 | 472 | 1.28e-16 | 80.1 |
Msa0286880 | AT1G08900.5 | 26.991 | 226 | 129 | 4 | 37 | 262 | 229 | 418 | 2.26e-16 | 79.0 |
Msa0286880 | AT1G08900.1 | 26.991 | 226 | 129 | 4 | 37 | 262 | 271 | 460 | 2.29e-16 | 79.3 |
Msa0286880 | AT1G08900.2 | 26.991 | 226 | 129 | 4 | 37 | 262 | 271 | 460 | 2.29e-16 | 79.3 |
Msa0286880 | AT1G08900.3 | 26.991 | 226 | 129 | 4 | 37 | 262 | 263 | 452 | 2.71e-16 | 79.0 |
Msa0286880 | AT1G08890.1 | 25.664 | 226 | 128 | 5 | 37 | 260 | 273 | 460 | 4.08e-16 | 78.6 |
Msa0286880 | AT5G61520.2 | 26.241 | 282 | 166 | 7 | 1 | 279 | 216 | 458 | 1.27e-15 | 77.0 |
Msa0286880 | AT5G61520.1 | 25.532 | 282 | 168 | 6 | 1 | 279 | 264 | 506 | 1.83e-15 | 76.6 |
Msa0286880 | AT4G04760.2 | 28.958 | 259 | 144 | 10 | 2 | 260 | 246 | 464 | 3.39e-15 | 75.9 |
Msa0286880 | AT1G79820.3 | 28.889 | 180 | 94 | 2 | 78 | 257 | 294 | 439 | 9.61e-13 | 68.6 |
Msa0286880 | AT1G79820.5 | 28.889 | 180 | 94 | 2 | 78 | 257 | 232 | 377 | 2.62e-12 | 67.0 |
Msa0286880 | AT3G20460.1 | 23.982 | 221 | 122 | 4 | 47 | 262 | 309 | 488 | 2.12e-11 | 64.3 |
Find 40 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGGAAGTCCCTTTGTTTC+TGG | 0.144531 | 2_3:+28698339 | None:intergenic |
CATATTCCTCTGTATCTTAA+TGG | 0.207748 | 2_3:+28698513 | None:intergenic |
TAAACCTCTTCTTACTGTTT+TGG | 0.262901 | 2_3:+28699607 | None:intergenic |
CTATCATTGACTGATGCTAT+TGG | 0.289689 | 2_3:-28698432 | Msa0286880:CDS |
CATGGAACTGTTCCCATTCC+TGG | 0.335209 | 2_3:+28698558 | None:intergenic |
CAGCAAAAGTTTCTTCCTTC+CGG | 0.336912 | 2_3:+28699400 | None:intergenic |
GAGAATGAGTTGTAGTTTGA+TGG | 0.346522 | 2_3:+28699327 | None:intergenic |
GTTGGAAGACGAATCGTCTT+TGG | 0.354197 | 2_3:+28699658 | None:intergenic |
GAATAGCATCAACATCAAAT+TGG | 0.360652 | 2_3:-28698485 | Msa0286880:CDS |
TTTGATTATGCTGACTTTGT+TGG | 0.388815 | 2_3:+28699640 | None:intergenic |
CCATTCCTGGTGAGAAGAAT+AGG | 0.401944 | 2_3:+28698571 | None:intergenic |
ACAGCTGGAATCAATGCATT+TGG | 0.414045 | 2_3:-28699455 | Msa0286880:CDS |
AACGGTTGGCTAGCACTAAT+CGG | 0.428488 | 2_3:-28698609 | Msa0286880:CDS |
ATTATTGTGCAGCTATTACC+TGG | 0.428833 | 2_3:-28698720 | Msa0286880:intron |
CCTATTCTTCTCACCAGGAA+TGG | 0.445918 | 2_3:-28698571 | Msa0286880:CDS |
TGAAGAGGTTGAGAAAATGT+TGG | 0.471924 | 2_3:-28698316 | Msa0286880:CDS |
CTATTCTTCTCACCAGGAAT+GGG | 0.473967 | 2_3:-28698570 | Msa0286880:CDS |
ATTTCAGAGTTTACAACCCA+TGG | 0.480742 | 2_3:+28698540 | None:intergenic |
CCAACCATCGTTCAACTAGC+TGG | 0.480899 | 2_3:-28699518 | Msa0286880:CDS |
TGTTGATTCCGACGAATTGT+TGG | 0.492825 | 2_3:+28699558 | None:intergenic |
GTAAGAAGAGGTTTATATGC+AGG | 0.494340 | 2_3:-28699599 | Msa0286880:CDS |
CTTCTGTCACTCGTCACAGC+TGG | 0.501982 | 2_3:-28699470 | Msa0286880:CDS |
AACTACAACTCATTCTCCTA+TGG | 0.511200 | 2_3:-28699321 | Msa0286880:intron |
TTATTGTGCAGCTATTACCT+GGG | 0.530370 | 2_3:-28698719 | Msa0286880:intron |
CAGGAATGGGAACAGTTCCA+TGG | 0.531089 | 2_3:-28698557 | Msa0286880:CDS |
AAAACCAAAACAGTAAGAAG+AGG | 0.540201 | 2_3:-28699611 | Msa0286880:CDS |
TTAAGATACAGAGGAATATG+TGG | 0.557495 | 2_3:-28698510 | Msa0286880:CDS |
AGAGGTTTATATGCAGGAGT+AGG | 0.565880 | 2_3:-28699593 | Msa0286880:CDS |
CCAGCTAGTTGAACGATGGT+TGG | 0.571403 | 2_3:+28699518 | None:intergenic |
AAAGGGACTTCCTATTGAAG+AGG | 0.575338 | 2_3:-28698331 | Msa0286880:CDS |
AGGAATGGGAACAGTTCCAT+GGG | 0.596384 | 2_3:-28698556 | Msa0286880:CDS |
TACATCCTATTCTTCTCACC+AGG | 0.604815 | 2_3:-28698576 | Msa0286880:CDS |
CAAATCTTCCAACAATTCGT+CGG | 0.617999 | 2_3:-28699566 | Msa0286880:CDS |
TTTGATATTAGACATGCCCC+AGG | 0.618868 | 2_3:+28698702 | None:intergenic |
TATTGTGCAGCTATTACCTG+GGG | 0.645299 | 2_3:-28698718 | Msa0286880:intron |
AGTCGACAATGGTACACAAG+AGG | 0.654966 | 2_3:-28698645 | Msa0286880:CDS |
AGATACAGAGGAATATGTGG+AGG | 0.659965 | 2_3:-28698507 | Msa0286880:CDS |
TCTAATATCAAATGACACAA+CGG | 0.660534 | 2_3:-28698691 | Msa0286880:CDS |
ATATATCCATTAAGATACAG+AGG | 0.661567 | 2_3:-28698519 | Msa0286880:CDS |
AAAACCAGCTAGTTGAACGA+TGG | 0.712111 | 2_3:+28699514 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAATATTGTAATTCAATAT+TGG | + | chr2_3:28699013-28699032 | None:intergenic | 15.0% |
!! | TCAATATTGTAATTCAATAT+TGG | + | chr2_3:28699013-28699032 | None:intergenic | 15.0% |
!!! | GAATTTTGTATTTTAAGTTT+TGG | - | chr2_3:28699611-28699630 | Msa0286880:CDS | 15.0% |
!! | TCAATATTGTAATTCAATAT+TGG | + | chr2_3:28699013-28699032 | None:intergenic | 15.0% |
!! | TCAATATTGTAATTCAATAT+TGG | + | chr2_3:28699013-28699032 | None:intergenic | 15.0% |
!!! | GAATTTTGTATTTTAAGTTT+TGG | - | chr2_3:28699611-28699630 | Msa0286880:CDS | 15.0% |
!!! | ATATATTTTATTGACAAGAC+CGG | - | chr2_3:28698479-28698498 | Msa0286880:CDS | 20.0% |
!!! | CACTTAGTATTTTATTTGAA+AGG | + | chr2_3:28698762-28698781 | None:intergenic | 20.0% |
!! | TAATTCTGTTAAAAAACACT+TGG | + | chr2_3:28698887-28698906 | None:intergenic | 20.0% |
!!! | GTAATTCAATATTGGTTATT+AGG | + | chr2_3:28699005-28699024 | None:intergenic | 20.0% |
!!! | GTAATTCAATATTGGTTATT+AGG | + | chr2_3:28699005-28699024 | None:intergenic | 20.0% |
!!! | TTAGTATTGTTATTAGACAT+TGG | + | chr2_3:28699159-28699178 | None:intergenic | 20.0% |
!! | AAAAACAATGACAAAAACAA+TGG | + | chr2_3:28699536-28699555 | None:intergenic | 20.0% |
!!! | ATATATTTTATTGACAAGAC+CGG | - | chr2_3:28698479-28698498 | Msa0286880:CDS | 20.0% |
!!! | CACTTAGTATTTTATTTGAA+AGG | + | chr2_3:28698762-28698781 | None:intergenic | 20.0% |
!! | TAATTCTGTTAAAAAACACT+TGG | + | chr2_3:28698887-28698906 | None:intergenic | 20.0% |
!!! | GTAATTCAATATTGGTTATT+AGG | + | chr2_3:28699005-28699024 | None:intergenic | 20.0% |
!!! | GTAATTCAATATTGGTTATT+AGG | + | chr2_3:28699005-28699024 | None:intergenic | 20.0% |
!!! | TTAGTATTGTTATTAGACAT+TGG | + | chr2_3:28699159-28699178 | None:intergenic | 20.0% |
!! | AAAAACAATGACAAAAACAA+TGG | + | chr2_3:28699536-28699555 | None:intergenic | 20.0% |
!!! | ACACTTGGTATTCTTTTTTT+TGG | + | chr2_3:28698872-28698891 | None:intergenic | 25.0% |
!! | ATAGTACGGTTAATTTTGTA+AGG | + | chr2_3:28698968-28698987 | None:intergenic | 25.0% |
!! | TGGTTAGTTAACTAATAGTA+CGG | + | chr2_3:28698982-28699001 | None:intergenic | 25.0% |
!! | ATTCAATATTGGTTATTAGG+TGG | + | chr2_3:28699002-28699021 | None:intergenic | 25.0% |
!! | ATAGTACGGTTAATTTTGTA+AGG | + | chr2_3:28698968-28698987 | None:intergenic | 25.0% |
!! | TGGTTAGTTAACTAATAGTA+CGG | + | chr2_3:28698982-28699001 | None:intergenic | 25.0% |
!! | ATTCAATATTGGTTATTAGG+TGG | + | chr2_3:28699002-28699021 | None:intergenic | 25.0% |
! | TCTAATATCAAATGACACAA+CGG | - | chr2_3:28699207-28699226 | Msa0286880:intron | 25.0% |
! | ATATATCCATTAAGATACAG+AGG | - | chr2_3:28699379-28699398 | Msa0286880:CDS | 25.0% |
!!! | ACACTTGGTATTCTTTTTTT+TGG | + | chr2_3:28698872-28698891 | None:intergenic | 25.0% |
!! | ATAGTACGGTTAATTTTGTA+AGG | + | chr2_3:28698968-28698987 | None:intergenic | 25.0% |
!! | TGGTTAGTTAACTAATAGTA+CGG | + | chr2_3:28698982-28699001 | None:intergenic | 25.0% |
!! | ATTCAATATTGGTTATTAGG+TGG | + | chr2_3:28699002-28699021 | None:intergenic | 25.0% |
!! | ATAGTACGGTTAATTTTGTA+AGG | + | chr2_3:28698968-28698987 | None:intergenic | 25.0% |
!! | TGGTTAGTTAACTAATAGTA+CGG | + | chr2_3:28698982-28699001 | None:intergenic | 25.0% |
!! | ATTCAATATTGGTTATTAGG+TGG | + | chr2_3:28699002-28699021 | None:intergenic | 25.0% |
! | TCTAATATCAAATGACACAA+CGG | - | chr2_3:28699207-28699226 | Msa0286880:intron | 25.0% |
! | ATATATCCATTAAGATACAG+AGG | - | chr2_3:28699379-28699398 | Msa0286880:CDS | 25.0% |
!! | TTTGATTATGCTGACTTTGT+TGG | + | chr2_3:28698261-28698280 | None:intergenic | 30.0% |
AAAACCAAAACAGTAAGAAG+AGG | - | chr2_3:28698287-28698306 | Msa0286880:CDS | 30.0% | |
! | TAAACCTCTTCTTACTGTTT+TGG | + | chr2_3:28698294-28698313 | None:intergenic | 30.0% |
GTTTCAATTTCACTAACCAT+AGG | + | chr2_3:28698596-28698615 | None:intergenic | 30.0% | |
GACAATGCATAATATATGCA+AGG | - | chr2_3:28698821-28698840 | Msa0286880:intron | 30.0% | |
!!! | CTTGGTATTCTTTTTTTTGG+TGG | + | chr2_3:28698869-28698888 | None:intergenic | 30.0% |
CATATTCCTCTGTATCTTAA+TGG | + | chr2_3:28699388-28699407 | None:intergenic | 30.0% | |
TTAAGATACAGAGGAATATG+TGG | - | chr2_3:28699388-28699407 | Msa0286880:CDS | 30.0% | |
GAATAGCATCAACATCAAAT+TGG | - | chr2_3:28699413-28699432 | Msa0286880:CDS | 30.0% | |
! | ATTTTCTCAACCTCTTCAAT+AGG | + | chr2_3:28699580-28699599 | None:intergenic | 30.0% |
!!! | TGTATTTTAAGTTTTGGCAG+AGG | - | chr2_3:28699617-28699636 | Msa0286880:CDS | 30.0% |
!! | TTTGATTATGCTGACTTTGT+TGG | + | chr2_3:28698261-28698280 | None:intergenic | 30.0% |
AAAACCAAAACAGTAAGAAG+AGG | - | chr2_3:28698287-28698306 | Msa0286880:CDS | 30.0% | |
! | TAAACCTCTTCTTACTGTTT+TGG | + | chr2_3:28698294-28698313 | None:intergenic | 30.0% |
GTTTCAATTTCACTAACCAT+AGG | + | chr2_3:28698596-28698615 | None:intergenic | 30.0% | |
GACAATGCATAATATATGCA+AGG | - | chr2_3:28698821-28698840 | Msa0286880:intron | 30.0% | |
!!! | CTTGGTATTCTTTTTTTTGG+TGG | + | chr2_3:28698869-28698888 | None:intergenic | 30.0% |
CATATTCCTCTGTATCTTAA+TGG | + | chr2_3:28699388-28699407 | None:intergenic | 30.0% | |
TTAAGATACAGAGGAATATG+TGG | - | chr2_3:28699388-28699407 | Msa0286880:CDS | 30.0% | |
GAATAGCATCAACATCAAAT+TGG | - | chr2_3:28699413-28699432 | Msa0286880:CDS | 30.0% | |
! | ATTTTCTCAACCTCTTCAAT+AGG | + | chr2_3:28699580-28699599 | None:intergenic | 30.0% |
!!! | TGTATTTTAAGTTTTGGCAG+AGG | - | chr2_3:28699617-28699636 | Msa0286880:CDS | 30.0% |
GTAAGAAGAGGTTTATATGC+AGG | - | chr2_3:28698299-28698318 | Msa0286880:CDS | 35.0% | |
CAAATCTTCCAACAATTCGT+CGG | - | chr2_3:28698332-28698351 | Msa0286880:CDS | 35.0% | |
! | ATTTTATTGACAAGACCGGA+AGG | - | chr2_3:28698483-28698502 | Msa0286880:CDS | 35.0% |
!!! | CTTTTGCTGTTTAGTTTGTC+TGG | - | chr2_3:28698512-28698531 | Msa0286880:CDS | 35.0% |
GAGAATGAGTTGTAGTTTGA+TGG | + | chr2_3:28698574-28698593 | None:intergenic | 35.0% | |
AACTACAACTCATTCTCCTA+TGG | - | chr2_3:28698577-28698596 | Msa0286880:CDS | 35.0% | |
CCAAAGCTGTTCTATAATCA+GGG | + | chr2_3:28698640-28698659 | None:intergenic | 35.0% | |
TCCAAAGCTGTTCTATAATC+AGG | + | chr2_3:28698641-28698660 | None:intergenic | 35.0% | |
TGCATAATATATGCAAGGTC+CGG | - | chr2_3:28698826-28698845 | Msa0286880:intron | 35.0% | |
!!! | GGTATTCTTTTTTTTGGTGG+TGG | + | chr2_3:28698866-28698885 | None:intergenic | 35.0% |
ATTATTGTGCAGCTATTACC+TGG | - | chr2_3:28699178-28699197 | Msa0286880:intron | 35.0% | |
TTATTGTGCAGCTATTACCT+GGG | - | chr2_3:28699179-28699198 | Msa0286880:intron | 35.0% | |
AAAAAGAGCAAAGTCGACAA+TGG | - | chr2_3:28699242-28699261 | Msa0286880:intron | 35.0% | |
ATTTCAGAGTTTACAACCCA+TGG | + | chr2_3:28699361-28699380 | None:intergenic | 35.0% | |
! | CTATCATTGACTGATGCTAT+TGG | - | chr2_3:28699466-28699485 | Msa0286880:CDS | 35.0% |
!! | TGTTTTTGTGCCAGAAACAA+AGG | - | chr2_3:28699549-28699568 | Msa0286880:CDS | 35.0% |
! | GTTTTTGTGCCAGAAACAAA+GGG | - | chr2_3:28699550-28699569 | Msa0286880:CDS | 35.0% |
TGAAGAGGTTGAGAAAATGT+TGG | - | chr2_3:28699582-28699601 | Msa0286880:CDS | 35.0% | |
GTAAGAAGAGGTTTATATGC+AGG | - | chr2_3:28698299-28698318 | Msa0286880:CDS | 35.0% | |
CAAATCTTCCAACAATTCGT+CGG | - | chr2_3:28698332-28698351 | Msa0286880:CDS | 35.0% | |
! | ATTTTATTGACAAGACCGGA+AGG | - | chr2_3:28698483-28698502 | Msa0286880:CDS | 35.0% |
!!! | CTTTTGCTGTTTAGTTTGTC+TGG | - | chr2_3:28698512-28698531 | Msa0286880:CDS | 35.0% |
GAGAATGAGTTGTAGTTTGA+TGG | + | chr2_3:28698574-28698593 | None:intergenic | 35.0% | |
AACTACAACTCATTCTCCTA+TGG | - | chr2_3:28698577-28698596 | Msa0286880:CDS | 35.0% | |
CCAAAGCTGTTCTATAATCA+GGG | + | chr2_3:28698640-28698659 | None:intergenic | 35.0% | |
TCCAAAGCTGTTCTATAATC+AGG | + | chr2_3:28698641-28698660 | None:intergenic | 35.0% | |
TGCATAATATATGCAAGGTC+CGG | - | chr2_3:28698826-28698845 | Msa0286880:intron | 35.0% | |
!!! | GGTATTCTTTTTTTTGGTGG+TGG | + | chr2_3:28698866-28698885 | None:intergenic | 35.0% |
ATTATTGTGCAGCTATTACC+TGG | - | chr2_3:28699178-28699197 | Msa0286880:intron | 35.0% | |
TTATTGTGCAGCTATTACCT+GGG | - | chr2_3:28699179-28699198 | Msa0286880:intron | 35.0% | |
AAAAAGAGCAAAGTCGACAA+TGG | - | chr2_3:28699242-28699261 | Msa0286880:intron | 35.0% | |
ATTTCAGAGTTTACAACCCA+TGG | + | chr2_3:28699361-28699380 | None:intergenic | 35.0% | |
! | CTATCATTGACTGATGCTAT+TGG | - | chr2_3:28699466-28699485 | Msa0286880:CDS | 35.0% |
!! | TGTTTTTGTGCCAGAAACAA+AGG | - | chr2_3:28699549-28699568 | Msa0286880:CDS | 35.0% |
! | GTTTTTGTGCCAGAAACAAA+GGG | - | chr2_3:28699550-28699569 | Msa0286880:CDS | 35.0% |
TGAAGAGGTTGAGAAAATGT+TGG | - | chr2_3:28699582-28699601 | Msa0286880:CDS | 35.0% | |
AGAGGTTTATATGCAGGAGT+AGG | - | chr2_3:28698305-28698324 | Msa0286880:CDS | 40.0% | |
!! | TGTTGATTCCGACGAATTGT+TGG | + | chr2_3:28698343-28698362 | None:intergenic | 40.0% |
AAAACCAGCTAGTTGAACGA+TGG | + | chr2_3:28698387-28698406 | None:intergenic | 40.0% | |
ACAGCTGGAATCAATGCATT+TGG | - | chr2_3:28698443-28698462 | Msa0286880:CDS | 40.0% | |
CAGCAAAAGTTTCTTCCTTC+CGG | + | chr2_3:28698501-28698520 | None:intergenic | 40.0% | |
CCCTGATTATAGAACAGCTT+TGG | - | chr2_3:28698637-28698656 | Msa0286880:CDS | 40.0% | |
GGATTGCATGAAATGCCTTA+AGG | - | chr2_3:28698673-28698692 | Msa0286880:CDS | 40.0% | |
GAAGCACAAAATCCACATTC+AGG | + | chr2_3:28698704-28698723 | None:intergenic | 40.0% | |
TTGTGCTTCTGCTGGTAATA+AGG | - | chr2_3:28698715-28698734 | Msa0286880:intron | 40.0% | |
GCATAATATATGCAAGGTCC+GGG | - | chr2_3:28698827-28698846 | Msa0286880:intron | 40.0% | |
CATAATATATGCAAGGTCCG+GGG | - | chr2_3:28698828-28698847 | Msa0286880:intron | 40.0% | |
TATTGTGCAGCTATTACCTG+GGG | - | chr2_3:28699180-28699199 | Msa0286880:intron | 40.0% | |
TTTGATATTAGACATGCCCC+AGG | + | chr2_3:28699199-28699218 | None:intergenic | 40.0% | |
AGAGGATGTCCAAGCAAAAA+CGG | - | chr2_3:28699271-28699290 | Msa0286880:intron | 40.0% | |
TACATCCTATTCTTCTCACC+AGG | - | chr2_3:28699322-28699341 | Msa0286880:CDS | 40.0% | |
CTATTCTTCTCACCAGGAAT+GGG | - | chr2_3:28699328-28699347 | Msa0286880:CDS | 40.0% | |
AGATACAGAGGAATATGTGG+AGG | - | chr2_3:28699391-28699410 | Msa0286880:CDS | 40.0% | |
! | ATAGGAAGTCCCTTTGTTTC+TGG | + | chr2_3:28699562-28699581 | None:intergenic | 40.0% |
AAAGGGACTTCCTATTGAAG+AGG | - | chr2_3:28699567-28699586 | Msa0286880:CDS | 40.0% | |
AGAGGTTTATATGCAGGAGT+AGG | - | chr2_3:28698305-28698324 | Msa0286880:CDS | 40.0% | |
!! | TGTTGATTCCGACGAATTGT+TGG | + | chr2_3:28698343-28698362 | None:intergenic | 40.0% |
AAAACCAGCTAGTTGAACGA+TGG | + | chr2_3:28698387-28698406 | None:intergenic | 40.0% | |
ACAGCTGGAATCAATGCATT+TGG | - | chr2_3:28698443-28698462 | Msa0286880:CDS | 40.0% | |
CAGCAAAAGTTTCTTCCTTC+CGG | + | chr2_3:28698501-28698520 | None:intergenic | 40.0% | |
CCCTGATTATAGAACAGCTT+TGG | - | chr2_3:28698637-28698656 | Msa0286880:CDS | 40.0% | |
GGATTGCATGAAATGCCTTA+AGG | - | chr2_3:28698673-28698692 | Msa0286880:CDS | 40.0% | |
GAAGCACAAAATCCACATTC+AGG | + | chr2_3:28698704-28698723 | None:intergenic | 40.0% | |
TTGTGCTTCTGCTGGTAATA+AGG | - | chr2_3:28698715-28698734 | Msa0286880:intron | 40.0% | |
GCATAATATATGCAAGGTCC+GGG | - | chr2_3:28698827-28698846 | Msa0286880:intron | 40.0% | |
CATAATATATGCAAGGTCCG+GGG | - | chr2_3:28698828-28698847 | Msa0286880:intron | 40.0% | |
TATTGTGCAGCTATTACCTG+GGG | - | chr2_3:28699180-28699199 | Msa0286880:intron | 40.0% | |
TTTGATATTAGACATGCCCC+AGG | + | chr2_3:28699199-28699218 | None:intergenic | 40.0% | |
AGAGGATGTCCAAGCAAAAA+CGG | - | chr2_3:28699271-28699290 | Msa0286880:intron | 40.0% | |
TACATCCTATTCTTCTCACC+AGG | - | chr2_3:28699322-28699341 | Msa0286880:CDS | 40.0% | |
CTATTCTTCTCACCAGGAAT+GGG | - | chr2_3:28699328-28699347 | Msa0286880:CDS | 40.0% | |
AGATACAGAGGAATATGTGG+AGG | - | chr2_3:28699391-28699410 | Msa0286880:CDS | 40.0% | |
! | ATAGGAAGTCCCTTTGTTTC+TGG | + | chr2_3:28699562-28699581 | None:intergenic | 40.0% |
AAAGGGACTTCCTATTGAAG+AGG | - | chr2_3:28699567-28699586 | Msa0286880:CDS | 40.0% | |
GTTGGAAGACGAATCGTCTT+TGG | + | chr2_3:28698243-28698262 | None:intergenic | 45.0% | |
!! | AGCTTTGGATGCTGCTCAAT+GGG | - | chr2_3:28698652-28698671 | Msa0286880:CDS | 45.0% |
CACATTCAGGAGAAGCCTTA+AGG | + | chr2_3:28698691-28698710 | None:intergenic | 45.0% | |
CTTAAGGCTTCTCCTGAATG+TGG | - | chr2_3:28698689-28698708 | Msa0286880:CDS | 45.0% | |
! | TGTGGATTTTGTGCTTCTGC+TGG | - | chr2_3:28698707-28698726 | Msa0286880:CDS | 45.0% |
AGTCGACAATGGTACACAAG+AGG | - | chr2_3:28699253-28699272 | Msa0286880:intron | 45.0% | |
GATGTCCAAGCAAAAACGGT+TGG | - | chr2_3:28699275-28699294 | Msa0286880:intron | 45.0% | |
! | AACGGTTGGCTAGCACTAAT+CGG | - | chr2_3:28699289-28699308 | Msa0286880:intron | 45.0% |
CCATTCCTGGTGAGAAGAAT+AGG | + | chr2_3:28699330-28699349 | None:intergenic | 45.0% | |
CCTATTCTTCTCACCAGGAA+TGG | - | chr2_3:28699327-28699346 | Msa0286880:CDS | 45.0% | |
AGGAATGGGAACAGTTCCAT+GGG | - | chr2_3:28699342-28699361 | Msa0286880:CDS | 45.0% | |
GTTGGAAGACGAATCGTCTT+TGG | + | chr2_3:28698243-28698262 | None:intergenic | 45.0% | |
!! | AGCTTTGGATGCTGCTCAAT+GGG | - | chr2_3:28698652-28698671 | Msa0286880:CDS | 45.0% |
CACATTCAGGAGAAGCCTTA+AGG | + | chr2_3:28698691-28698710 | None:intergenic | 45.0% | |
CTTAAGGCTTCTCCTGAATG+TGG | - | chr2_3:28698689-28698708 | Msa0286880:CDS | 45.0% | |
! | TGTGGATTTTGTGCTTCTGC+TGG | - | chr2_3:28698707-28698726 | Msa0286880:CDS | 45.0% |
AGTCGACAATGGTACACAAG+AGG | - | chr2_3:28699253-28699272 | Msa0286880:intron | 45.0% | |
GATGTCCAAGCAAAAACGGT+TGG | - | chr2_3:28699275-28699294 | Msa0286880:intron | 45.0% | |
! | AACGGTTGGCTAGCACTAAT+CGG | - | chr2_3:28699289-28699308 | Msa0286880:intron | 45.0% |
CCATTCCTGGTGAGAAGAAT+AGG | + | chr2_3:28699330-28699349 | None:intergenic | 45.0% | |
CCTATTCTTCTCACCAGGAA+TGG | - | chr2_3:28699327-28699346 | Msa0286880:CDS | 45.0% | |
AGGAATGGGAACAGTTCCAT+GGG | - | chr2_3:28699342-28699361 | Msa0286880:CDS | 45.0% | |
CCAGCTAGTTGAACGATGGT+TGG | + | chr2_3:28698383-28698402 | None:intergenic | 50.0% | |
CCAACCATCGTTCAACTAGC+TGG | - | chr2_3:28698380-28698399 | Msa0286880:CDS | 50.0% | |
!! | CAGCTTTGGATGCTGCTCAA+TGG | - | chr2_3:28698651-28698670 | Msa0286880:CDS | 50.0% |
TGAGCTTAGCTGAGCTGGTA+AGG | - | chr2_3:28698799-28698818 | Msa0286880:intron | 50.0% | |
AAGGTCCGGGGTTCAAATCT+CGG | - | chr2_3:28698840-28698859 | Msa0286880:intron | 50.0% | |
!! | GCTAGCCAACCGTTTTTGCT+TGG | + | chr2_3:28699283-28699302 | None:intergenic | 50.0% |
CATGGAACTGTTCCCATTCC+TGG | + | chr2_3:28699343-28699362 | None:intergenic | 50.0% | |
CAGGAATGGGAACAGTTCCA+TGG | - | chr2_3:28699341-28699360 | Msa0286880:CDS | 50.0% | |
CCAGCTAGTTGAACGATGGT+TGG | + | chr2_3:28698383-28698402 | None:intergenic | 50.0% | |
CCAACCATCGTTCAACTAGC+TGG | - | chr2_3:28698380-28698399 | Msa0286880:CDS | 50.0% | |
!! | CAGCTTTGGATGCTGCTCAA+TGG | - | chr2_3:28698651-28698670 | Msa0286880:CDS | 50.0% |
TGAGCTTAGCTGAGCTGGTA+AGG | - | chr2_3:28698799-28698818 | Msa0286880:intron | 50.0% | |
AAGGTCCGGGGTTCAAATCT+CGG | - | chr2_3:28698840-28698859 | Msa0286880:intron | 50.0% | |
!! | GCTAGCCAACCGTTTTTGCT+TGG | + | chr2_3:28699283-28699302 | None:intergenic | 50.0% |
CATGGAACTGTTCCCATTCC+TGG | + | chr2_3:28699343-28699362 | None:intergenic | 50.0% | |
CAGGAATGGGAACAGTTCCA+TGG | - | chr2_3:28699341-28699360 | Msa0286880:CDS | 50.0% | |
CTTCTGTCACTCGTCACAGC+TGG | - | chr2_3:28698428-28698447 | Msa0286880:CDS | 55.0% | |
AGCTAAGCTCACGAGTCACG+CGG | + | chr2_3:28698790-28698809 | None:intergenic | 55.0% | |
ACTCGTGAGCTTAGCTGAGC+TGG | - | chr2_3:28698794-28698813 | Msa0286880:intron | 55.0% | |
CTTCTGTCACTCGTCACAGC+TGG | - | chr2_3:28698428-28698447 | Msa0286880:CDS | 55.0% | |
AGCTAAGCTCACGAGTCACG+CGG | + | chr2_3:28698790-28698809 | None:intergenic | 55.0% | |
ACTCGTGAGCTTAGCTGAGC+TGG | - | chr2_3:28698794-28698813 | Msa0286880:intron | 55.0% | |
GGTGGCCGAGATTTGAACCC+CGG | + | chr2_3:28698848-28698867 | None:intergenic | 60.0% | |
GGTGGCCGAGATTTGAACCC+CGG | + | chr2_3:28698848-28698867 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 28698233 | 28699687 | 28698233 | ID=Msa0286880;Name=Msa0286880 |
chr2_3 | mRNA | 28698233 | 28699687 | 28698233 | ID=Msa0286880-mRNA-1;Parent=Msa0286880;Name=Msa0286880-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|287 |
chr2_3 | exon | 28699322 | 28699687 | 28699322 | ID=Msa0286880-mRNA-1:exon:10144;Parent=Msa0286880-mRNA-1 |
chr2_3 | exon | 28698233 | 28698730 | 28698233 | ID=Msa0286880-mRNA-1:exon:10143;Parent=Msa0286880-mRNA-1 |
chr2_3 | CDS | 28699322 | 28699687 | 28699322 | ID=Msa0286880-mRNA-1:cds;Parent=Msa0286880-mRNA-1 |
chr2_3 | CDS | 28698233 | 28698730 | 28698233 | ID=Msa0286880-mRNA-1:cds;Parent=Msa0286880-mRNA-1 |
Gene Sequence |
Protein sequence |