Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415840 | B7FHH9 | 99.203 | 251 | 2 | 0 | 1 | 251 | 1 | 251 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012280 | Msa1415840 | 0.989740 | 1.935471e-179 | -8.615850e-47 |
| Msa0049020 | Msa1415840 | 0.979879 | 6.018759e-149 | -8.615850e-47 |
| Msa0049060 | Msa1415840 | 0.801886 | 7.285798e-49 | -8.615850e-47 |
| Msa0060950 | Msa1415840 | 0.914825 | 1.215285e-84 | -8.615850e-47 |
| Msa0108810 | Msa1415840 | 0.919422 | 4.589898e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415840 | MtrunA17_Chr1g0160791 | 99.203 | 251 | 2 | 0 | 1 | 251 | 1 | 251 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415840 | AT1G23110.7 | 69.721 | 251 | 73 | 2 | 1 | 251 | 1 | 248 | 4.47e-130 | 368 |
| Msa1415840 | AT1G23110.4 | 69.721 | 251 | 73 | 2 | 1 | 251 | 1 | 248 | 4.47e-130 | 368 |
| Msa1415840 | AT1G23110.1 | 69.721 | 251 | 73 | 2 | 1 | 251 | 1 | 248 | 4.47e-130 | 368 |
| Msa1415840 | AT1G23110.6 | 69.721 | 251 | 73 | 2 | 1 | 251 | 1 | 248 | 4.47e-130 | 368 |
| Msa1415840 | AT1G23110.3 | 69.721 | 251 | 73 | 2 | 1 | 251 | 1 | 248 | 4.47e-130 | 368 |
| Msa1415840 | AT1G23110.5 | 69.721 | 251 | 73 | 2 | 1 | 251 | 1 | 248 | 4.47e-130 | 368 |
| Msa1415840 | AT1G23110.2 | 69.721 | 251 | 73 | 2 | 1 | 251 | 1 | 248 | 4.47e-130 | 368 |
| Msa1415840 | AT1G70900.1 | 68.526 | 251 | 72 | 2 | 1 | 251 | 1 | 244 | 5.03e-128 | 362 |
Find 90 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGAAGATGTTTAATAAT+TGG | 0.144161 | tig0024288:-46970 | None:intergenic |
| CACGCATATTCGGCTTATTT+TGG | 0.171631 | tig0024288:-41780 | None:intergenic |
| TTCAGGTAGCATTTGCTAAA+AGG | 0.205366 | tig0024288:+46484 | Msa1415840:intron |
| TCTTCCAGTTAATCCATTAA+TGG | 0.209417 | tig0024288:+45609 | Msa1415840:CDS |
| TGAATAAGTGTAACCATTAA+TGG | 0.230670 | tig0024288:-45622 | None:intergenic |
| TTGTATGCCAATTCATTAAT+TGG | 0.241173 | tig0024288:+43512 | Msa1415840:CDS |
| ATGTTCATTAGTTAATTTAT+TGG | 0.267527 | tig0024288:+46892 | Msa1415840:three_prime_UTR |
| GCACAAAATGTCATCATTAA+TGG | 0.269537 | tig0024288:+46545 | Msa1415840:CDS |
| CTGGGCCAGCAATTTCTTGC+TGG | 0.276545 | tig0024288:-42833 | None:intergenic |
| ACCAGATGCAATTCAACTTC+TGG | 0.290522 | tig0024288:-42852 | None:intergenic |
| TTACTTTCTTCTGTTGTAGT+TGG | 0.302779 | tig0024288:+46869 | Msa1415840:three_prime_UTR |
| TTTATAATCTTAACTATTGC+TGG | 0.304439 | tig0024288:-46772 | None:intergenic |
| CACAAAATGTCATCATTAAT+GGG | 0.310527 | tig0024288:+46546 | Msa1415840:CDS |
| GTAACCATTAATGGATTAAC+TGG | 0.336183 | tig0024288:-45613 | None:intergenic |
| TTCACTCCAAGAGCTATAAA+AGG | 0.340939 | tig0024288:-43380 | None:intergenic |
| TTAGTTAATTTATTGGAGAT+AGG | 0.353074 | tig0024288:+46899 | Msa1415840:three_prime_UTR |
| TCATTAAGCAATAATATTAA+CGG | 0.356709 | tig0024288:-46943 | None:intergenic |
| CAAATAATAGCTGGTTTGAT+TGG | 0.356731 | tig0024288:+41738 | None:intergenic |
| TCCAACTCCAATTAATGAAT+TGG | 0.359861 | tig0024288:-43519 | None:intergenic |
| GTTGAAGTTCCACCCGTTGA+TGG | 0.369925 | tig0024288:-43004 | None:intergenic |
| TGGCATCTTGCTGCTGCTGT+TGG | 0.370168 | tig0024288:+46627 | Msa1415840:CDS |
| CTTGCTGCTGCTGTTGGCGT+AGG | 0.370230 | tig0024288:+46633 | Msa1415840:CDS |
| TATATAGCTCCACGCATATT+CGG | 0.382156 | tig0024288:-41790 | None:intergenic |
| AGTTATGTTTATATTGTAGC+TGG | 0.388062 | tig0024288:+46812 | Msa1415840:three_prime_UTR |
| GTGTGAGCCATTCTCAAGTC+TGG | 0.396348 | tig0024288:-46519 | None:intergenic |
| TCAGGTAGCATTTGCTAAAA+GGG | 0.403276 | tig0024288:+46485 | Msa1415840:intron |
| GATTAAGATAGAAATTATAA+TGG | 0.409267 | tig0024288:-46988 | None:intergenic |
| ATGCCGCCATCAGCAACTTC+GGG | 0.411544 | tig0024288:-45576 | None:intergenic |
| CCAGATGCAATTCAACTTCT+GGG | 0.413188 | tig0024288:-42851 | None:intergenic |
| GCCAATTCATTAATTGGAGT+TGG | 0.425449 | tig0024288:+43518 | Msa1415840:CDS |
| TATTCATACTCTGCACATAA+TGG | 0.426676 | tig0024288:-46716 | None:intergenic |
| TTGGAGATAGGGATTTGTAT+AGG | 0.428957 | tig0024288:+46911 | Msa1415840:three_prime_UTR |
| GATGCCGCCATCAGCAACTT+CGG | 0.434740 | tig0024288:-45577 | None:intergenic |
| CTTAACTATTGCTGGTTACA+AGG | 0.438636 | tig0024288:-46764 | None:intergenic |
| CCCAGAAGTTGAATTGCATC+TGG | 0.439703 | tig0024288:+42851 | Msa1415840:five_prime_UTR |
| TAGTTAATTTATTGGAGATA+GGG | 0.440772 | tig0024288:+46900 | Msa1415840:three_prime_UTR |
| ACTTATTCACACTGGGATGA+TGG | 0.450402 | tig0024288:+45636 | Msa1415840:CDS |
| AGAGCCCTTGAGGGTGTCCA+TGG | 0.461445 | tig0024288:+42917 | Msa1415840:CDS |
| GTTATGTTTATATTGTAGCT+GGG | 0.468914 | tig0024288:+46813 | Msa1415840:three_prime_UTR |
| TGGTGCCAGCAAGAAATTGC+TGG | 0.485808 | tig0024288:+42828 | Msa1415840:five_prime_UTR |
| GGAGGTCTTCATCCATCAAC+GGG | 0.486108 | tig0024288:+42992 | Msa1415840:CDS |
| TACAGCACTCTTGAACCAAC+TGG | 0.486971 | tig0024288:+42808 | Msa1415840:five_prime_UTR |
| CTACTCGAGAAGCTTATTGC+AGG | 0.492357 | tig0024288:-46658 | None:intergenic |
| GAATTGCATCTGGTCTAGTC+AGG | 0.495250 | tig0024288:+42861 | Msa1415840:five_prime_UTR |
| GGAAGATGCTTACTTAAGTC+GGG | 0.495469 | tig0024288:-41820 | None:intergenic |
| TTACTCTCTGTCAAAGAAAA+CGG | 0.507422 | tig0024288:-42962 | None:intergenic |
| AGGAAGATGCTTACTTAAGT+CGG | 0.509199 | tig0024288:-41821 | None:intergenic |
| GAAGTAGAACAAATAATAGC+TGG | 0.510746 | tig0024288:+41729 | None:intergenic |
| TGCCATGCAGCATGAAGGTA+TGG | 0.516087 | tig0024288:-46609 | None:intergenic |
| GAGCCCTTGAGGGTGTCCAT+GGG | 0.521864 | tig0024288:+42918 | Msa1415840:CDS |
| ACATTACTTGTAGACGGGTA+TGG | 0.528584 | tig0024288:+43156 | Msa1415840:intron |
| CATTGTAGTGCTAGTTGTCA+TGG | 0.530052 | tig0024288:+43209 | Msa1415840:CDS |
| AATTTCTTGCTGGCACCAGT+TGG | 0.533337 | tig0024288:-42823 | None:intergenic |
| GTCAAAGAAAACGGTGAATG+AGG | 0.534729 | tig0024288:-42953 | None:intergenic |
| TGGTTACACTTATTCACACT+GGG | 0.539486 | tig0024288:+45629 | Msa1415840:CDS |
| CCGTACTGCAGTGTCTGTCA+AGG | 0.540712 | tig0024288:+45536 | Msa1415840:intron |
| TTCATTAATTGGAGTTGGAG+TGG | 0.540804 | tig0024288:+43523 | Msa1415840:CDS |
| CTCCATACCTTCATGCTGCA+TGG | 0.543276 | tig0024288:+46607 | Msa1415840:CDS |
| ATGGTTACACTTATTCACAC+TGG | 0.543526 | tig0024288:+45628 | Msa1415840:CDS |
| AATCATAGTAGAGCCCTTGA+GGG | 0.544572 | tig0024288:+42908 | Msa1415840:CDS |
| AGCTGAGGAAATATTTGAGA+TGG | 0.555169 | tig0024288:+43576 | Msa1415840:CDS |
| CAAGATGCCATGCAGCATGA+AGG | 0.556021 | tig0024288:-46614 | None:intergenic |
| TGGATAGGTCTCAAGCATGC+AGG | 0.558026 | tig0024288:-43188 | None:intergenic |
| GAACCCCATGGACACCCTCA+AGG | 0.559915 | tig0024288:-42922 | None:intergenic |
| GAATCATAGTAGAGCCCTTG+AGG | 0.562280 | tig0024288:+42907 | Msa1415840:CDS |
| GAAAGATCCAGACTTGAGAA+TGG | 0.562355 | tig0024288:+46512 | Msa1415840:CDS |
| CAAAATAAGCCGAATATGCG+TGG | 0.565542 | tig0024288:+41781 | Msa1415840:five_prime_UTR |
| TGCATACACTACTAACATTG+TGG | 0.582508 | tig0024288:+46686 | Msa1415840:three_prime_UTR |
| CAACTAGCACTACAATGGAT+AGG | 0.589791 | tig0024288:-43203 | None:intergenic |
| TGGAGGTCTTCATCCATCAA+CGG | 0.597327 | tig0024288:+42991 | Msa1415840:CDS |
| CATGACAACTAGCACTACAA+TGG | 0.598876 | tig0024288:-43208 | None:intergenic |
| AACCCCATGGACACCCTCAA+GGG | 0.598877 | tig0024288:-42921 | None:intergenic |
| AGTGTGTATCATTGTTCAAG+AGG | 0.603766 | tig0024288:+43551 | Msa1415840:CDS |
| TGAAAACCCGAAGTTGCTGA+TGG | 0.606713 | tig0024288:+45570 | Msa1415840:CDS |
| CGTACTGCAGTGTCTGTCAA+GGG | 0.610659 | tig0024288:+45537 | Msa1415840:intron |
| CAAAATGTCATCATTAATGG+GGG | 0.614239 | tig0024288:+46548 | Msa1415840:CDS |
| GGGTGTCCATGGGGTTCACG+TGG | 0.615207 | tig0024288:+42928 | Msa1415840:CDS |
| ACAAAATGTCATCATTAATG+GGG | 0.617550 | tig0024288:+46547 | Msa1415840:CDS |
| ATTGTTCAAGAGGGAAGCTG+AGG | 0.630623 | tig0024288:+43561 | Msa1415840:CDS |
| CTCTTGGAGTGAATGCCCCA+AGG | 0.633390 | tig0024288:+43390 | Msa1415840:CDS |
| GTGTGTATCATTGTTCAAGA+GGG | 0.637169 | tig0024288:+43552 | Msa1415840:CDS |
| GAGGCACCACGTGAACCCCA+TGG | 0.642175 | tig0024288:-42934 | None:intergenic |
| AGCCCTTGAGGGTGTCCATG+GGG | 0.647945 | tig0024288:+42919 | Msa1415840:CDS |
| ACAGAGAGTAATCAAAGTGG+AGG | 0.655486 | tig0024288:+42974 | Msa1415840:CDS |
| TTGACAGAGAGTAATCAAAG+TGG | 0.672739 | tig0024288:+42971 | Msa1415840:CDS |
| AAACCCGAAGTTGCTGATGG+CGG | 0.674850 | tig0024288:+45573 | Msa1415840:CDS |
| GGTCTTCATCCATCAACGGG+TGG | 0.677085 | tig0024288:+42995 | Msa1415840:CDS |
| TATTCACACTGGGATGATGG+AGG | 0.677284 | tig0024288:+45639 | Msa1415840:CDS |
| AAAATGTCATCATTAATGGG+GGG | 0.708086 | tig0024288:+46549 | Msa1415840:CDS |
| TCAGGCACATGAGTCAACAG+AGG | 0.745998 | tig0024288:+42879 | Msa1415840:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAATAATAATATAT+TGG | - | tig0024288:42082-42101 | None:intergenic | 0.0% |
| !!! | TTATTTAATTTTTATTTTTT+TGG | + | tig0024288:45284-45303 | Msa1415840:intron | 0.0% |
| !!! | TATTTAATTTTTATTTTTTT+GGG | + | tig0024288:45285-45304 | Msa1415840:intron | 0.0% |
| !!! | TTATTTATTTTTTATTTTTT+TGG | + | tig0024288:45378-45397 | Msa1415840:intron | 0.0% |
| !!! | TATTTATTTTTTATTTTTTT+GGG | + | tig0024288:45379-45398 | Msa1415840:intron | 0.0% |
| !! | AATATAAAACTTGAAATATA+GGG | - | tig0024288:45444-45463 | None:intergenic | 10.0% |
| !! | AAATATAAAACTTGAAATAT+AGG | - | tig0024288:45445-45464 | None:intergenic | 10.0% |
| !! | AACTAAAATAATAACAAATT+AGG | - | tig0024288:45478-45497 | None:intergenic | 10.0% |
| !! | ATACTTCAATATTTATTTAT+CGG | - | tig0024288:45834-45853 | None:intergenic | 10.0% |
| !! | TTTGATAAGGAAAAAAAAAA+AGG | - | tig0024288:41857-41876 | None:intergenic | 15.0% |
| !!! | ATATTTAATTAGTAGTTTTC+TGG | + | tig0024288:42168-42187 | Msa1415840:intron | 15.0% |
| !!! | TTTGATTTAATGAAAATTCT+GGG | + | tig0024288:42242-42261 | Msa1415840:intron | 15.0% |
| !!! | TTATTTTTTGTGATAGTATA+AGG | + | tig0024288:43095-43114 | Msa1415840:intron | 15.0% |
| !! | ATAGTAGAACAAAAAAAAAT+GGG | + | tig0024288:44059-44078 | Msa1415840:intron | 15.0% |
| !! | AAAACAAAAAAAAAAGGTTT+AGG | + | tig0024288:44149-44168 | Msa1415840:intron | 15.0% |
| !! | AAACAAAAAAAAAAGGTTTA+GGG | + | tig0024288:44150-44169 | Msa1415840:intron | 15.0% |
| !! | TTATTACAATGAAATAATGA+AGG | + | tig0024288:44476-44495 | Msa1415840:intron | 15.0% |
| !!! | CATGTTTATATTTTATATAG+AGG | + | tig0024288:45008-45027 | Msa1415840:intron | 15.0% |
| !! | ATAATGTTAATTAGTTAACT+TGG | - | tig0024288:45749-45768 | None:intergenic | 15.0% |
| !!! | AAATTTAAGACTTTATTTAC+GGG | - | tig0024288:46215-46234 | None:intergenic | 15.0% |
| !!! | CAAATTTAAGACTTTATTTA+CGG | - | tig0024288:46216-46235 | None:intergenic | 15.0% |
| !!! | ATTACATCTAATACTTTTTT+TGG | - | tig0024288:46368-46387 | None:intergenic | 15.0% |
| !! | AAGAAAGTAAAAAAAAATAC+TGG | - | tig0024288:46859-46878 | None:intergenic | 15.0% |
| !! | ATGTTCATTAGTTAATTTAT+TGG | + | tig0024288:46892-46911 | Msa1415840:three_prime_UTR | 15.0% |
| !! | TCATTAAGCAATAATATTAA+CGG | - | tig0024288:46946-46965 | None:intergenic | 15.0% |
| !! | GAGAATATGTGTTTATTTAT+AGG | - | tig0024288:41973-41992 | None:intergenic | 20.0% |
| !! | TAATTTATTTACTTTGCTTC+AGG | + | tig0024288:42029-42048 | Msa1415840:intron | 20.0% |
| !!! | TTCAATTAAAGGGATATTTT+GGG | + | tig0024288:42127-42146 | Msa1415840:intron | 20.0% |
| !!! | GTTTGATTTAATGAAAATTC+TGG | + | tig0024288:42241-42260 | Msa1415840:intron | 20.0% |
| !!! | AGTTTAAAATATGACATCAT+AGG | + | tig0024288:42346-42365 | Msa1415840:intron | 20.0% |
| !!! | TGCAAACATAATTTTGTTTA+TGG | + | tig0024288:42517-42536 | Msa1415840:intron | 20.0% |
| !!! | TTTTATTGTTACATTGGTAT+TGG | - | tig0024288:43992-44011 | None:intergenic | 20.0% |
| !!! | GCATTTTTTTATTGTTACAT+TGG | - | tig0024288:43998-44017 | None:intergenic | 20.0% |
| !! | CATAGTAGAACAAAAAAAAA+TGG | + | tig0024288:44058-44077 | Msa1415840:intron | 20.0% |
| !! | CAGTGAAAAACAAAAAAAAA+AGG | + | tig0024288:44143-44162 | Msa1415840:intron | 20.0% |
| !!! | GTTTATATTTTATATAGAGG+AGG | + | tig0024288:45011-45030 | Msa1415840:intron | 20.0% |
| !! | TGAATTTGTGAAAATTAACT+AGG | - | tig0024288:45194-45213 | None:intergenic | 20.0% |
| !!! | GTTAATTTTCACAAATTCAA+TGG | + | tig0024288:45195-45214 | Msa1415840:intron | 20.0% |
| !! | CTAATTAACATTATATTTCG+AGG | + | tig0024288:45755-45774 | Msa1415840:intron | 20.0% |
| !!! | CTCAAAAATAAAAAGCATTA+TGG | - | tig0024288:45915-45934 | None:intergenic | 20.0% |
| !! | CAAATTATTGTCAGTATTAA+TGG | - | tig0024288:46004-46023 | None:intergenic | 20.0% |
| !! | TAATGCTAATGATACTTATA+AGG | + | tig0024288:46068-46087 | Msa1415840:intron | 20.0% |
| !! | TAATGATACTTATAAGGATA+AGG | + | tig0024288:46074-46093 | Msa1415840:intron | 20.0% |
| !! | AGATATTCAATATTACATTC+CGG | + | tig0024288:46171-46190 | Msa1415840:intron | 20.0% |
| !!! | AATACTTTTCCTCTATAATA+TGG | + | tig0024288:46339-46358 | Msa1415840:intron | 20.0% |
| !! | TTTATAATCTTAACTATTGC+TGG | - | tig0024288:46775-46794 | None:intergenic | 20.0% |
| !! | TTAGTTAATTTATTGGAGAT+AGG | + | tig0024288:46899-46918 | Msa1415840:three_prime_UTR | 20.0% |
| !! | TAGTTAATTTATTGGAGATA+GGG | + | tig0024288:46900-46919 | Msa1415840:three_prime_UTR | 20.0% |
| !! | AATGGAAGATGTTTAATAAT+TGG | - | tig0024288:46973-46992 | None:intergenic | 20.0% |
| ! | AAAAAAAAGGAATAAGAGAG+AGG | - | tig0024288:41844-41863 | None:intergenic | 25.0% |
| !! | GTTCAATTAAAGGGATATTT+TGG | + | tig0024288:42126-42145 | Msa1415840:intron | 25.0% |
| !! | TCAATTAAAGGGATATTTTG+GGG | + | tig0024288:42128-42147 | Msa1415840:intron | 25.0% |
| ! | AGCATAAATCACAAAATGAT+GGG | - | tig0024288:42290-42309 | None:intergenic | 25.0% |
| ! | TAGCATAAATCACAAAATGA+TGG | - | tig0024288:42291-42310 | None:intergenic | 25.0% |
| !! | TTTCAGTTATCTGAAATGTT+TGG | + | tig0024288:42375-42394 | Msa1415840:intron | 25.0% |
| ! | GTACATAATCTGTTATTGTT+TGG | + | tig0024288:42555-42574 | Msa1415840:intron | 25.0% |
| !!! | TATTTTTATCGCAGAATTGT+TGG | + | tig0024288:42779-42798 | Msa1415840:intron | 25.0% |
| !! | ATTTTTATCGCAGAATTGTT+GGG | + | tig0024288:42780-42799 | Msa1415840:intron | 25.0% |
| ! | AAAACAAGAACAACATCAAA+TGG | - | tig0024288:43250-43269 | None:intergenic | 25.0% |
| ! | CATAAGACTAGATTATTCTA+AGG | - | tig0024288:43273-43292 | None:intergenic | 25.0% |
| !!! | GATGAATTTTTTTGCAATGT+AGG | + | tig0024288:43471-43490 | Msa1415840:intron | 25.0% |
| ! | TTGTATGCCAATTCATTAAT+TGG | + | tig0024288:43512-43531 | Msa1415840:CDS | 25.0% |
| ! | AGATAGACATGAATAACTAA+AGG | + | tig0024288:43649-43668 | Msa1415840:intron | 25.0% |
| ! | AGACTATATATGTTATACTC+TGG | + | tig0024288:43721-43740 | Msa1415840:intron | 25.0% |
| ! | AGATTCAATGTAAATTCAAC+TGG | + | tig0024288:43963-43982 | Msa1415840:intron | 25.0% |
| ! | TTAAATTTGAACCGTTTGAA+GGG | - | tig0024288:44252-44271 | None:intergenic | 25.0% |
| ! | TTCAAACGGTTCAAATTTAA+GGG | + | tig0024288:44252-44271 | Msa1415840:intron | 25.0% |
| ! | TAAGAATCCTATCTATAGAA+GGG | - | tig0024288:44681-44700 | None:intergenic | 25.0% |
| ! | TCTTAGAAGAGTTTATATAG+AGG | + | tig0024288:44696-44715 | Msa1415840:intron | 25.0% |
| ! | TCTTAGAAGAGTTTATATAG+AGG | + | tig0024288:44696-44715 | Msa1415840:intron | 25.0% |
| ! | ATCTACATATTTCATTTCTG+TGG | + | tig0024288:45143-45162 | Msa1415840:intron | 25.0% |
| !!! | TTTTGGGTTAACTAAACATT+CGG | + | tig0024288:45301-45320 | Msa1415840:intron | 25.0% |
| !!! | AGTACGGTTTTATAGAAAAT+AGG | - | tig0024288:45523-45542 | None:intergenic | 25.0% |
| ! | TGAATAAGTGTAACCATTAA+TGG | - | tig0024288:45625-45644 | None:intergenic | 25.0% |
| ! | TTGCTTTCAAATATTTGCAA+TGG | + | tig0024288:45666-45685 | Msa1415840:intron | 25.0% |
| ! | ATTATTGTCAGTATTAATGG+TGG | - | tig0024288:46001-46020 | None:intergenic | 25.0% |
| !! | GACATATTTTACTCATTATG+TGG | - | tig0024288:46149-46168 | None:intergenic | 25.0% |
| ! | GATATTCAATATTACATTCC+GGG | + | tig0024288:46172-46191 | Msa1415840:intron | 25.0% |
| !!! | TTTTGGTAACCATATTATAG+AGG | - | tig0024288:46351-46370 | None:intergenic | 25.0% |
| ! | CACAAAATGTCATCATTAAT+GGG | + | tig0024288:46546-46565 | Msa1415840:CDS | 25.0% |
| ! | ACAAAATGTCATCATTAATG+GGG | + | tig0024288:46547-46566 | Msa1415840:CDS | 25.0% |
| !!! | AGTTTTAGGGAATAAATCAT+CGG | - | tig0024288:46589-46608 | None:intergenic | 25.0% |
| ! | AGTTATGTTTATATTGTAGC+TGG | + | tig0024288:46812-46831 | Msa1415840:three_prime_UTR | 25.0% |
| ! | GTTATGTTTATATTGTAGCT+GGG | + | tig0024288:46813-46832 | Msa1415840:three_prime_UTR | 25.0% |
| !!! | AGCGCGTTTTTATTTTGATA+AGG | - | tig0024288:41870-41889 | None:intergenic | 30.0% |
| TGCTGTTAGAGTTCAATTAA+AGG | + | tig0024288:42116-42135 | Msa1415840:intron | 30.0% | |
| GCTGTTAGAGTTCAATTAAA+GGG | + | tig0024288:42117-42136 | Msa1415840:intron | 30.0% | |
| GCATAAATCACAAAATGATG+GGG | - | tig0024288:42289-42308 | None:intergenic | 30.0% | |
| TCTGTTATTGTTTGGTTGTT+AGG | + | tig0024288:42563-42582 | Msa1415840:intron | 30.0% | |
| CTGTTATTGTTTGGTTGTTA+GGG | + | tig0024288:42564-42583 | Msa1415840:intron | 30.0% | |
| TTACTCTCTGTCAAAGAAAA+CGG | - | tig0024288:42965-42984 | None:intergenic | 30.0% | |
| ! | TCAATTCCTTTTATAGCTCT+TGG | + | tig0024288:43374-43393 | Msa1415840:CDS | 30.0% |
| TTGGAGGAAAATATTACCTT+GGG | - | tig0024288:43409-43428 | None:intergenic | 30.0% | |
| ATTGGAGGAAAATATTACCT+TGG | - | tig0024288:43410-43429 | None:intergenic | 30.0% | |
| ! | TAAGATATCTTTCTAGCCAA+AGG | - | tig0024288:43444-43463 | None:intergenic | 30.0% |
| TCCAACTCCAATTAATGAAT+TGG | - | tig0024288:43522-43541 | None:intergenic | 30.0% | |
| CAATAATATGCAAAATCCCT+TGG | + | tig0024288:43677-43696 | Msa1415840:intron | 30.0% | |
| !!! | TCGCACTTTTTTTTTACCAA+GGG | - | tig0024288:43696-43715 | None:intergenic | 30.0% |
| !!! | TTCGCACTTTTTTTTTACCA+AGG | - | tig0024288:43697-43716 | None:intergenic | 30.0% |
| TATATGTTATACTCTGGACT+TGG | + | tig0024288:43727-43746 | Msa1415840:intron | 30.0% | |
| AGAGATTGTATAAGAAACAG+AGG | + | tig0024288:43902-43921 | Msa1415840:intron | 30.0% | |
| AACACAGAACATGTAATGAA+TGG | + | tig0024288:44030-44049 | Msa1415840:intron | 30.0% | |
| ! | AAAAAGGTTTAGGGTGAAAA+CGG | + | tig0024288:44159-44178 | Msa1415840:intron | 30.0% |
| CTTAAATTTGAACCGTTTGA+AGG | - | tig0024288:44253-44272 | None:intergenic | 30.0% | |
| CTTCAAACGGTTCAAATTTA+AGG | + | tig0024288:44251-44270 | Msa1415840:intron | 30.0% | |
| AAGAATCCTATCTATAGAAG+GGG | - | tig0024288:44680-44699 | None:intergenic | 30.0% | |
| CTAAGAATCCTATCTATAGA+AGG | - | tig0024288:44682-44701 | None:intergenic | 30.0% | |
| TAGAAGAGTTTATATAGAGG+AGG | + | tig0024288:44699-44718 | Msa1415840:intron | 30.0% | |
| TATTGCAAAACATCAAGTGT+TGG | + | tig0024288:45109-45128 | Msa1415840:intron | 30.0% | |
| CATATTTCATTTCTGTGGTT+TGG | + | tig0024288:45148-45167 | Msa1415840:intron | 30.0% | |
| ! | AAATTCAATGGTTCTGTCTT+CGG | + | tig0024288:45207-45226 | Msa1415840:intron | 30.0% |
| TGAAATATAGGGAAAAATGC+AGG | - | tig0024288:45433-45452 | None:intergenic | 30.0% | |
| TCTTCCAGTTAATCCATTAA+TGG | + | tig0024288:45609-45628 | Msa1415840:CDS | 30.0% | |
| !! | GTAACCATTAATGGATTAAC+TGG | - | tig0024288:45616-45635 | None:intergenic | 30.0% |
| TCTATGTTGTAAACATGTGT+AGG | + | tig0024288:45871-45890 | Msa1415840:intron | 30.0% | |
| ! | AGTCTTAAATTTGAGTGTTG+TGG | + | tig0024288:46223-46242 | Msa1415840:intron | 30.0% |
| ! | TTAAATTTGAGTGTTGTGGA+CGG | + | tig0024288:46227-46246 | Msa1415840:intron | 30.0% |
| !!! | ATTTGACAAGCCACTTTTAA+TGG | - | tig0024288:46279-46298 | None:intergenic | 30.0% |
| !! | TATAGAGGAAAAGTATTCAC+CGG | - | tig0024288:46336-46355 | None:intergenic | 30.0% |
| GCACAAAATGTCATCATTAA+TGG | + | tig0024288:46545-46564 | Msa1415840:CDS | 30.0% | |
| CAAAATGTCATCATTAATGG+GGG | + | tig0024288:46548-46567 | Msa1415840:CDS | 30.0% | |
| AAAATGTCATCATTAATGGG+GGG | + | tig0024288:46549-46568 | Msa1415840:CDS | 30.0% | |
| TATTCATACTCTGCACATAA+TGG | - | tig0024288:46719-46738 | None:intergenic | 30.0% | |
| TTACTTTCTTCTGTTGTAGT+TGG | + | tig0024288:46869-46888 | Msa1415840:three_prime_UTR | 30.0% | |
| TATATAGCTCCACGCATATT+CGG | - | tig0024288:41793-41812 | None:intergenic | 35.0% | |
| AGGAAGATGCTTACTTAAGT+CGG | - | tig0024288:41824-41843 | None:intergenic | 35.0% | |
| TTTATAGGAGAAGTGAGATG+AGG | - | tig0024288:41958-41977 | None:intergenic | 35.0% | |
| ! | ATTTACTTTGCTTCAGGTTC+AGG | + | tig0024288:42035-42054 | Msa1415840:intron | 35.0% |
| ACTCTAACAGCAATGAAACA+GGG | - | tig0024288:42108-42127 | None:intergenic | 35.0% | |
| AACTCTAACAGCAATGAAAC+AGG | - | tig0024288:42109-42128 | None:intergenic | 35.0% | |
| ! | AACCACTGTGATTTTGCTAA+TGG | + | tig0024288:42428-42447 | Msa1415840:intron | 35.0% |
| TACCATTAGCAAAATCACAG+TGG | - | tig0024288:42433-42452 | None:intergenic | 35.0% | |
| ! | CTGTGATTTTGCTAATGGTA+AGG | + | tig0024288:42433-42452 | Msa1415840:intron | 35.0% |
| ! | TAATGGTAAGGTTTGAAGCT+TGG | + | tig0024288:42445-42464 | Msa1415840:intron | 35.0% |
| AGGTGTGTTTGACAAAATCA+CGG | - | tig0024288:42473-42492 | None:intergenic | 35.0% | |
| ! | CAGTATTAGCTTAGCTGTAA+TGG | - | tig0024288:42607-42626 | None:intergenic | 35.0% |
| CATTACAGCTAAGCTAATAC+TGG | + | tig0024288:42605-42624 | Msa1415840:intron | 35.0% | |
| !!! | GTATCTAGCAGTTTTTTGTG+TGG | + | tig0024288:42705-42724 | Msa1415840:intron | 35.0% |
| TTGACAGAGAGTAATCAAAG+TGG | + | tig0024288:42971-42990 | Msa1415840:CDS | 35.0% | |
| ATGTAGTCGGTTAGTATTCA+GGG | - | tig0024288:43140-43159 | None:intergenic | 35.0% | |
| AATGTAGTCGGTTAGTATTC+AGG | - | tig0024288:43141-43160 | None:intergenic | 35.0% | |
| !! | GAATAATCTAGTCTTATGCG+TGG | + | tig0024288:43275-43294 | Msa1415840:intron | 35.0% |
| AAGATGTTGATCACCTGATA+CGG | - | tig0024288:43327-43346 | None:intergenic | 35.0% | |
| TTCACTCCAAGAGCTATAAA+AGG | - | tig0024288:43383-43402 | None:intergenic | 35.0% | |
| TGGAGGAAAATATTACCTTG+GGG | - | tig0024288:43408-43427 | None:intergenic | 35.0% | |
| ! | AAGGAATTTAGGATGATTGG+AGG | - | tig0024288:43425-43444 | None:intergenic | 35.0% |
| ! | CCAAAGGAATTTAGGATGAT+TGG | - | tig0024288:43428-43447 | None:intergenic | 35.0% |
| CCAATCATCCTAAATTCCTT+TGG | + | tig0024288:43425-43444 | Msa1415840:intron | 35.0% | |
| ! | CTTTCTAGCCAAAGGAATTT+AGG | - | tig0024288:43436-43455 | None:intergenic | 35.0% |
| GCCAATTCATTAATTGGAGT+TGG | + | tig0024288:43518-43537 | Msa1415840:CDS | 35.0% | |
| TTCATTAATTGGAGTTGGAG+TGG | + | tig0024288:43523-43542 | Msa1415840:CDS | 35.0% | |
| AGTGTGTATCATTGTTCAAG+AGG | + | tig0024288:43551-43570 | Msa1415840:CDS | 35.0% | |
| GTGTGTATCATTGTTCAAGA+GGG | + | tig0024288:43552-43571 | Msa1415840:CDS | 35.0% | |
| AGCTGAGGAAATATTTGAGA+TGG | + | tig0024288:43576-43595 | Msa1415840:CDS | 35.0% | |
| TATACTCTGGACTTGGAAAT+TGG | + | tig0024288:43734-43753 | Msa1415840:intron | 35.0% | |
| !! | AGCGACATATTTTAGAGACT+TGG | - | tig0024288:43768-43787 | None:intergenic | 35.0% |
| TTAAACCCTCATAGTTCTCT+AGG | - | tig0024288:44428-44447 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | tig0024288:44743-44762 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | tig0024288:44743-44762 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | tig0024288:44743-44762 | None:intergenic | 35.0% | |
| !! | AACATCAAGTGTTGGCTAAT+TGG | + | tig0024288:45117-45136 | Msa1415840:intron | 35.0% |
| GTTCATATAACTGACTGCTT+AGG | + | tig0024288:45258-45277 | Msa1415840:intron | 35.0% | |
| GTTCATATAACTGACTGCTT+AGG | + | tig0024288:45258-45277 | Msa1415840:intron | 35.0% | |
| ATGGTTACACTTATTCACAC+TGG | + | tig0024288:45628-45647 | Msa1415840:CDS | 35.0% | |
| TGGTTACACTTATTCACACT+GGG | + | tig0024288:45629-45648 | Msa1415840:CDS | 35.0% | |
| ATACCAACCACACAACAAAT+AGG | + | tig0024288:45779-45798 | Msa1415840:intron | 35.0% | |
| TACCAACCACACAACAAATA+GGG | + | tig0024288:45780-45799 | Msa1415840:intron | 35.0% | |
| TTGTCAGTATTAATGGTGGT+GGG | - | tig0024288:45997-46016 | None:intergenic | 35.0% | |
| ATTGTCAGTATTAATGGTGG+TGG | - | tig0024288:45998-46017 | None:intergenic | 35.0% | |
| ATTCAATATTACATTCCGGG+TGG | + | tig0024288:46175-46194 | Msa1415840:intron | 35.0% | |
| ! | TAAATTTGAGTGTTGTGGAC+GGG | + | tig0024288:46228-46247 | Msa1415840:intron | 35.0% |
| TCAAATTCACCAACCAAGAT+TGG | + | tig0024288:46293-46312 | Msa1415840:intron | 35.0% | |
| CTACGAAATATTGCTTCTTC+AGG | + | tig0024288:46467-46486 | Msa1415840:intron | 35.0% | |
| ! | TTCAGGTAGCATTTGCTAAA+AGG | + | tig0024288:46484-46503 | Msa1415840:intron | 35.0% |
| ! | TCAGGTAGCATTTGCTAAAA+GGG | + | tig0024288:46485-46504 | Msa1415840:intron | 35.0% |
| !! | CATGAAGGTATGGAGTTTTA+GGG | - | tig0024288:46602-46621 | None:intergenic | 35.0% |
| TGCATACACTACTAACATTG+TGG | + | tig0024288:46686-46705 | Msa1415840:three_prime_UTR | 35.0% | |
| ! | CTTAACTATTGCTGGTTACA+AGG | - | tig0024288:46767-46786 | None:intergenic | 35.0% |
| TTGGAGATAGGGATTTGTAT+AGG | + | tig0024288:46911-46930 | Msa1415840:three_prime_UTR | 35.0% | |
| GGGATTTGTATAGGAAAAAC+TGG | + | tig0024288:46920-46939 | Msa1415840:three_prime_UTR | 35.0% | |
| ! | CACGCATATTCGGCTTATTT+TGG | - | tig0024288:41783-41802 | None:intergenic | 40.0% |
| CAAAATAAGCCGAATATGCG+TGG | + | tig0024288:41781-41800 | Msa1415840:five_prime_UTR | 40.0% | |
| GGAAGATGCTTACTTAAGTC+GGG | - | tig0024288:41823-41842 | None:intergenic | 40.0% | |
| ! | GTGGTTGATTTCAGTTGGTA+AGG | - | tig0024288:41930-41949 | None:intergenic | 40.0% |
| ! | TAGTGGTGGTTGATTTCAGT+TGG | - | tig0024288:41935-41954 | None:intergenic | 40.0% |
| CTCTAACAGCAATGAAACAG+GGG | - | tig0024288:42107-42126 | None:intergenic | 40.0% | |
| ! | ACGTTGTACGTTTGGAATCA+AGG | - | tig0024288:42493-42512 | None:intergenic | 40.0% |
| TGATTCCAAACGTACAACGT+TGG | + | tig0024288:42493-42512 | Msa1415840:intron | 40.0% | |
| ACAGCTAAGCTAATACTGGA+AGG | + | tig0024288:42609-42628 | Msa1415840:intron | 40.0% | |
| CCAGATGCAATTCAACTTCT+GGG | - | tig0024288:42854-42873 | None:intergenic | 40.0% | |
| ACCAGATGCAATTCAACTTC+TGG | - | tig0024288:42855-42874 | None:intergenic | 40.0% | |
| AATCATAGTAGAGCCCTTGA+GGG | + | tig0024288:42908-42927 | Msa1415840:CDS | 40.0% | |
| GTCAAAGAAAACGGTGAATG+AGG | - | tig0024288:42956-42975 | None:intergenic | 40.0% | |
| ACAGAGAGTAATCAAAGTGG+AGG | + | tig0024288:42974-42993 | Msa1415840:CDS | 40.0% | |
| CCGTCTACAAGTAATGTAGT+CGG | - | tig0024288:43153-43172 | None:intergenic | 40.0% | |
| CCGACTACATTACTTGTAGA+CGG | + | tig0024288:43150-43169 | Msa1415840:intron | 40.0% | |
| CGACTACATTACTTGTAGAC+GGG | + | tig0024288:43151-43170 | Msa1415840:intron | 40.0% | |
| ACATTACTTGTAGACGGGTA+TGG | + | tig0024288:43156-43175 | Msa1415840:intron | 40.0% | |
| CAACTAGCACTACAATGGAT+AGG | - | tig0024288:43206-43225 | None:intergenic | 40.0% | |
| CATGACAACTAGCACTACAA+TGG | - | tig0024288:43211-43230 | None:intergenic | 40.0% | |
| CATTGTAGTGCTAGTTGTCA+TGG | + | tig0024288:43209-43228 | Msa1415840:CDS | 40.0% | |
| AGATGTTGATCACCTGATAC+GGG | - | tig0024288:43326-43345 | None:intergenic | 40.0% | |
| TTATCCAGGATTGACTACCT+AGG | - | tig0024288:43823-43842 | None:intergenic | 40.0% | |
| AGGTAGTCAATCCTGGATAA+AGG | + | tig0024288:43823-43842 | Msa1415840:intron | 40.0% | |
| AATACAGAGAGGGAATGGAA+AGG | + | tig0024288:44184-44203 | Msa1415840:intron | 40.0% | |
| ATACAGAGAGGGAATGGAAA+GGG | + | tig0024288:44185-44204 | Msa1415840:intron | 40.0% | |
| AACCCAAATTGCCCTTCAAA+CGG | + | tig0024288:44238-44257 | Msa1415840:intron | 40.0% | |
| AACCGTTTGAAGGGCAATTT+GGG | - | tig0024288:44243-44262 | None:intergenic | 40.0% | |
| GTGTTGTCAAATATCTGCCA+TGG | + | tig0024288:44545-44564 | Msa1415840:intron | 40.0% | |
| GGTTGTCAAAATATCTGCCA+TGG | - | tig0024288:44565-44584 | None:intergenic | 40.0% | |
| !! | ATTTTGACAACCTCTGTGAC+CGG | + | tig0024288:44573-44592 | Msa1415840:intron | 40.0% |
| !!! | AGCTTGAAATGGCGGTTTTT+TGG | + | tig0024288:44640-44659 | Msa1415840:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | tig0024288:44741-44760 | Msa1415840:intron | 40.0% |
| ATACCATGTCACGAATATCG+AGG | - | tig0024288:44767-44786 | None:intergenic | 40.0% | |
| GAATCCTATCTATCCGATGT+GGG | - | tig0024288:44901-44920 | None:intergenic | 40.0% | |
| AGAATCCTATCTATCCGATG+TGG | - | tig0024288:44902-44921 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | tig0024288:44741-44760 | Msa1415840:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | tig0024288:44741-44760 | Msa1415840:intron | 40.0% |
| ATATAGGGAAAAATGCAGGC+AGG | - | tig0024288:45429-45448 | None:intergenic | 40.0% | |
| ACTTATTCACACTGGGATGA+TGG | + | tig0024288:45636-45655 | Msa1415840:CDS | 40.0% | |
| !! | ACTTCTCCCTATTTGTTGTG+TGG | - | tig0024288:45789-45808 | None:intergenic | 40.0% |
| ACATGTGTAGGCATAAGAAG+TGG | + | tig0024288:45883-45902 | Msa1415840:intron | 40.0% | |
| ! | CTCATTTAAAGTGTGAGTCC+AGG | + | tig0024288:45961-45980 | Msa1415840:intron | 40.0% |
| ! | ATTTAAAGTGTGAGTCCAGG+AGG | + | tig0024288:45964-45983 | Msa1415840:intron | 40.0% |
| ! | TGTCAGTATTAATGGTGGTG+GGG | - | tig0024288:45996-46015 | None:intergenic | 40.0% |
| GATCTAAGTCTAATTCCACC+CGG | - | tig0024288:46193-46212 | None:intergenic | 40.0% | |
| GAAAGATCCAGACTTGAGAA+TGG | + | tig0024288:46512-46531 | Msa1415840:CDS | 40.0% | |
| !! | GCATGAAGGTATGGAGTTTT+AGG | - | tig0024288:46603-46622 | None:intergenic | 40.0% |
| TACAGCACTCTTGAACCAAC+TGG | + | tig0024288:42808-42827 | Msa1415840:five_prime_UTR | 45.0% | |
| AATTTCTTGCTGGCACCAGT+TGG | - | tig0024288:42826-42845 | None:intergenic | 45.0% | |
| CCCAGAAGTTGAATTGCATC+TGG | + | tig0024288:42851-42870 | Msa1415840:five_prime_UTR | 45.0% | |
| GAATTGCATCTGGTCTAGTC+AGG | + | tig0024288:42861-42880 | Msa1415840:five_prime_UTR | 45.0% | |
| GAATCATAGTAGAGCCCTTG+AGG | + | tig0024288:42907-42926 | Msa1415840:CDS | 45.0% | |
| TGGAGGTCTTCATCCATCAA+CGG | + | tig0024288:42991-43010 | Msa1415840:CDS | 45.0% | |
| TATTGCTATGTCCCCGTATC+AGG | + | tig0024288:43311-43330 | Msa1415840:intron | 45.0% | |
| GATGTTGATCACCTGATACG+GGG | - | tig0024288:43325-43344 | None:intergenic | 45.0% | |
| ATTGTTCAAGAGGGAAGCTG+AGG | + | tig0024288:43561-43580 | Msa1415840:CDS | 45.0% | |
| AGAACCTAGGTAGTCAATCC+TGG | + | tig0024288:43816-43835 | Msa1415840:intron | 45.0% | |
| GTCAATCCTGGATAAAGGCT+TGG | + | tig0024288:43828-43847 | Msa1415840:intron | 45.0% | |
| !! | ATCCTGCTATCCCACTTTTG+GGG | - | tig0024288:43863-43882 | None:intergenic | 45.0% |
| !! | GATCCTGCTATCCCACTTTT+GGG | - | tig0024288:43864-43883 | None:intergenic | 45.0% |
| TGAAAACGGCGAATACAGAG+AGG | + | tig0024288:44173-44192 | Msa1415840:intron | 45.0% | |
| GAAAACGGCGAATACAGAGA+GGG | + | tig0024288:44174-44193 | Msa1415840:intron | 45.0% | |
| TACAGAGAGGGAATGGAAAG+GGG | + | tig0024288:44186-44205 | Msa1415840:intron | 45.0% | |
| ATGGAAAGGGGAAGAGAGAA+AGG | + | tig0024288:44198-44217 | Msa1415840:intron | 45.0% | |
| TGGAAAGGGGAAGAGAGAAA+GGG | + | tig0024288:44199-44218 | Msa1415840:intron | 45.0% | |
| GAACCGTTTGAAGGGCAATT+TGG | - | tig0024288:44244-44263 | None:intergenic | 45.0% | |
| ! | AATCGTGATTTTCCGAGAGC+CGG | + | tig0024288:44278-44297 | Msa1415840:intron | 45.0% |
| ATCTCAGTGAAAAACCGCAC+GGG | - | tig0024288:44370-44389 | None:intergenic | 45.0% | |
| CATCTCAGTGAAAAACCGCA+CGG | - | tig0024288:44371-44390 | None:intergenic | 45.0% | |
| GTTCTCTAGGTAGCCAATAC+CGG | - | tig0024288:44415-44434 | None:intergenic | 45.0% | |
| TGGCTACCTAGAGAACTATG+AGG | + | tig0024288:44419-44438 | Msa1415840:intron | 45.0% | |
| GGCTACCTAGAGAACTATGA+GGG | + | tig0024288:44420-44439 | Msa1415840:intron | 45.0% | |
| TTCTCCACACGTGTTACACT+TGG | + | tig0024288:44523-44542 | Msa1415840:intron | 45.0% | |
| AACACCAAGTGTAACACGTG+TGG | - | tig0024288:44530-44549 | None:intergenic | 45.0% | |
| !! | TGTGACCGGTTTTCTAAGGA+TGG | + | tig0024288:44587-44606 | Msa1415840:intron | 45.0% |
| CTCTGCCATCCTTAGAAAAC+CGG | - | tig0024288:44595-44614 | None:intergenic | 45.0% | |
| CATATCGGTCATATAACGCC+TGG | - | tig0024288:44618-44637 | None:intergenic | 45.0% | |
| CAGGCGTTATATGACCGATA+TGG | + | tig0024288:44616-44635 | Msa1415840:intron | 45.0% | |
| ACCGATATGGCAGCTTGAAA+TGG | + | tig0024288:44629-44648 | Msa1415840:intron | 45.0% | |
| GCCATTTCAAGCTGCCATAT+CGG | - | tig0024288:44633-44652 | None:intergenic | 45.0% | |
| GATATGGCAGCTTGAAATGG+CGG | + | tig0024288:44632-44651 | Msa1415840:intron | 45.0% | |
| CTATCTATAGAAGGGGACCA+TGG | - | tig0024288:44673-44692 | None:intergenic | 45.0% | |
| CATGGTCCCCTTCTATAGAT+AGG | + | tig0024288:44671-44690 | Msa1415840:intron | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | tig0024288:44734-44753 | None:intergenic | 45.0% |
| GACATGGTATCAGAGCCTAT+CGG | + | tig0024288:44777-44796 | Msa1415840:intron | 45.0% | |
| ACATGGTATCAGAGCCTATC+GGG | + | tig0024288:44778-44797 | Msa1415840:intron | 45.0% | |
| GACTAAATCCCACTGAGTGT+TGG | - | tig0024288:44879-44898 | None:intergenic | 45.0% | |
| AGTGGGATTTAGTCCCACAT+CGG | + | tig0024288:44885-44904 | Msa1415840:intron | 45.0% | |
| TAGTCCCACATCGGATAGAT+AGG | + | tig0024288:44894-44913 | Msa1415840:intron | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | tig0024288:44734-44753 | None:intergenic | 45.0% |
| TGCAAGTGTCACGAATATCG+AGG | - | tig0024288:44990-45009 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | tig0024288:44734-44753 | None:intergenic | 45.0% |
| TGCAAGTGTCACGAATATCG+AGG | - | tig0024288:44990-45009 | None:intergenic | 45.0% | |
| TGAAAACCCGAAGTTGCTGA+TGG | + | tig0024288:45570-45589 | Msa1415840:CDS | 45.0% | |
| ! | TATTCACACTGGGATGATGG+AGG | + | tig0024288:45639-45658 | Msa1415840:CDS | 45.0% |
| !! | CTCCCTATTTGTTGTGTGGT+TGG | - | tig0024288:45785-45804 | None:intergenic | 45.0% |
| TGTTGTGGACGGGAAAAACA+AGG | + | tig0024288:46238-46257 | Msa1415840:intron | 45.0% | |
| TGGACGGGAAAAACAAGGTT+GGG | + | tig0024288:46243-46262 | Msa1415840:intron | 45.0% | |
| AGGGGAGACACCATTAAAAG+TGG | + | tig0024288:46266-46285 | Msa1415840:intron | 45.0% | |
| ATGAGATGGCCAATCTTGGT+TGG | - | tig0024288:46305-46324 | None:intergenic | 45.0% | |
| ! | ACCAAGATTGGCCATCTCAT+CGG | + | tig0024288:46305-46324 | Msa1415840:intron | 45.0% |
| CTACTCGAGAAGCTTATTGC+AGG | - | tig0024288:46661-46680 | None:intergenic | 45.0% | |
| !!! | ATATAATTTGTTATATTAAA+AGG | + | tig0024288:42681-42700 | Msa1415840:intron | 5.0% |
| ! | GAAGTGAGATGAGGTAGTGG+TGG | - | tig0024288:41949-41968 | None:intergenic | 50.0% |
| GGAGAAGTGAGATGAGGTAG+TGG | - | tig0024288:41952-41971 | None:intergenic | 50.0% | |
| TGCAGCCAACGTTGTACGTT+TGG | - | tig0024288:42501-42520 | None:intergenic | 50.0% | |
| ! | TGGTGCCAGCAAGAAATTGC+TGG | + | tig0024288:42828-42847 | Msa1415840:five_prime_UTR | 50.0% |
| TCAGGCACATGAGTCAACAG+AGG | + | tig0024288:42879-42898 | Msa1415840:exon | 50.0% | |
| GGAGGTCTTCATCCATCAAC+GGG | + | tig0024288:42992-43011 | Msa1415840:CDS | 50.0% | |
| GTTGAAGTTCCACCCGTTGA+TGG | - | tig0024288:43007-43026 | None:intergenic | 50.0% | |
| TGGATAGGTCTCAAGCATGC+AGG | - | tig0024288:43191-43210 | None:intergenic | 50.0% | |
| GTCGCTGCAACCAATCTATC+CGG | + | tig0024288:43782-43801 | Msa1415840:intron | 50.0% | |
| CTATCCAGAGCCGGATAGAT+TGG | - | tig0024288:43795-43814 | None:intergenic | 50.0% | |
| !! | CAATCTATCCGGCTCTGGAT+AGG | + | tig0024288:43793-43812 | Msa1415840:intron | 50.0% |
| TAGGTTCTCCTATCCAGAGC+CGG | - | tig0024288:43804-43823 | None:intergenic | 50.0% | |
| !!! | TGCTATCCCACTTTTGGGGT+CGG | - | tig0024288:43859-43878 | None:intergenic | 50.0% |
| ! | GGATCCTGCTATCCCACTTT+TGG | - | tig0024288:43865-43884 | None:intergenic | 50.0% |
| AAAGTGGGATAGCAGGATCC+CGG | + | tig0024288:43865-43884 | Msa1415840:intron | 50.0% | |
| AGGGGAAGAGAGAAAGGGTT+AGG | + | tig0024288:44204-44223 | Msa1415840:intron | 50.0% | |
| GGGGAAGAGAGAAAGGGTTA+GGG | + | tig0024288:44205-44224 | Msa1415840:intron | 50.0% | |
| CCTTAGAAAACCGGTCACAG+AGG | - | tig0024288:44586-44605 | None:intergenic | 50.0% | |
| !! | CCTCTGTGACCGGTTTTCTA+AGG | + | tig0024288:44583-44602 | Msa1415840:intron | 50.0% |
| ! | TTTCTAAGGATGGCAGAGCC+AGG | + | tig0024288:44597-44616 | Msa1415840:intron | 50.0% |
| !!! | GGTTTTTTGGCTTTCCGCCA+TGG | + | tig0024288:44653-44672 | Msa1415840:intron | 50.0% |
| TCTATAGAAGGGGACCATGG+CGG | - | tig0024288:44670-44689 | None:intergenic | 50.0% | |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | tig0024288:44731-44750 | Msa1415840:intron | 50.0% |
| AGGCCTCGATATTCGTGACA+TGG | + | tig0024288:44761-44780 | Msa1415840:intron | 50.0% | |
| AGCCTATCGGGTTCATCGTT+GGG | + | tig0024288:44790-44809 | Msa1415840:intron | 50.0% | |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | tig0024288:44731-44750 | Msa1415840:intron | 50.0% |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | tig0024288:44731-44750 | Msa1415840:intron | 50.0% |
| CCTTGACAGACACTGCAGTA+CGG | - | tig0024288:45539-45558 | None:intergenic | 50.0% | |
| CGTACTGCAGTGTCTGTCAA+GGG | + | tig0024288:45537-45556 | Msa1415840:intron | 50.0% | |
| AAACCCGAAGTTGCTGATGG+CGG | + | tig0024288:45573-45592 | Msa1415840:CDS | 50.0% | |
| GTGGACGGGAAAAACAAGGT+TGG | + | tig0024288:46242-46261 | Msa1415840:intron | 50.0% | |
| ACGGGAAAAACAAGGTTGGG+AGG | + | tig0024288:46246-46265 | Msa1415840:intron | 50.0% | |
| CGGGAAAAACAAGGTTGGGA+GGG | + | tig0024288:46247-46266 | Msa1415840:intron | 50.0% | |
| GGGAAAAACAAGGTTGGGAG+GGG | + | tig0024288:46248-46267 | Msa1415840:intron | 50.0% | |
| ACCGATGAGATGGCCAATCT+TGG | - | tig0024288:46309-46328 | None:intergenic | 50.0% | |
| GTGTGAGCCATTCTCAAGTC+TGG | - | tig0024288:46522-46541 | None:intergenic | 50.0% | |
| CTCCATACCTTCATGCTGCA+TGG | + | tig0024288:46607-46626 | Msa1415840:CDS | 50.0% | |
| TGCCATGCAGCATGAAGGTA+TGG | - | tig0024288:46612-46631 | None:intergenic | 50.0% | |
| CAAGATGCCATGCAGCATGA+AGG | - | tig0024288:46617-46636 | None:intergenic | 50.0% | |
| CTGGGCCAGCAATTTCTTGC+TGG | - | tig0024288:42836-42855 | None:intergenic | 55.0% | |
| AACCCCATGGACACCCTCAA+GGG | - | tig0024288:42924-42943 | None:intergenic | 55.0% | |
| GGTCTTCATCCATCAACGGG+TGG | + | tig0024288:42995-43014 | Msa1415840:CDS | 55.0% | |
| CTCTTGGAGTGAATGCCCCA+AGG | + | tig0024288:43390-43409 | Msa1415840:CDS | 55.0% | |
| GCAACCAATCTATCCGGCTC+TGG | + | tig0024288:43788-43807 | Msa1415840:intron | 55.0% | |
| !! | GGCTCTGGATAGGAGAACCT+AGG | + | tig0024288:43803-43822 | Msa1415840:intron | 55.0% |
| GTCGCTCCAAGCCTTTATCC+AGG | - | tig0024288:43837-43856 | None:intergenic | 55.0% | |
| GACCCCAAAAGTGGGATAGC+AGG | + | tig0024288:43858-43877 | Msa1415840:intron | 55.0% | |
| AAGTGGGATAGCAGGATCCC+GGG | + | tig0024288:43866-43885 | Msa1415840:intron | 55.0% | |
| TCTCTCCTCTCCTCTGTTCC+CGG | - | tig0024288:43887-43906 | None:intergenic | 55.0% | |
| CGGCGAATACAGAGAGGGAA+TGG | + | tig0024288:44179-44198 | Msa1415840:intron | 55.0% | |
| ACACTCCTCACCGTACAAGC+CGG | + | tig0024288:44721-44740 | Msa1415840:intron | 55.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | tig0024288:44729-44748 | None:intergenic | 55.0% |
| GAGCCTATCGGGTTCATCGT+TGG | + | tig0024288:44789-44808 | Msa1415840:intron | 55.0% | |
| AGCCCAACGATGAACCCGAT+AGG | - | tig0024288:44795-44814 | None:intergenic | 55.0% | |
| TGTTAGCGGCCAACACTCAG+TGG | + | tig0024288:44867-44886 | Msa1415840:intron | 55.0% | |
| GTTAGCGGCCAACACTCAGT+GGG | + | tig0024288:44868-44887 | Msa1415840:intron | 55.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | tig0024288:44729-44748 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | tig0024288:44729-44748 | None:intergenic | 55.0% |
| CCGTACTGCAGTGTCTGTCA+AGG | + | tig0024288:45536-45555 | Msa1415840:intron | 55.0% | |
| ATGCCGCCATCAGCAACTTC+GGG | - | tig0024288:45579-45598 | None:intergenic | 55.0% | |
| GATGCCGCCATCAGCAACTT+CGG | - | tig0024288:45580-45599 | None:intergenic | 55.0% | |
| TGGCATCTTGCTGCTGCTGT+TGG | + | tig0024288:46627-46646 | Msa1415840:CDS | 55.0% | |
| !! | AGAGCCCTTGAGGGTGTCCA+TGG | + | tig0024288:42917-42936 | Msa1415840:CDS | 60.0% |
| !! | GAGCCCTTGAGGGTGTCCAT+GGG | + | tig0024288:42918-42937 | Msa1415840:CDS | 60.0% |
| !! | AGCCCTTGAGGGTGTCCATG+GGG | + | tig0024288:42919-42938 | Msa1415840:CDS | 60.0% |
| GAACCCCATGGACACCCTCA+AGG | - | tig0024288:42925-42944 | None:intergenic | 60.0% | |
| GAGCGACCGACCCCAAAAGT+GGG | + | tig0024288:43850-43869 | Msa1415840:intron | 60.0% | |
| TAGCAGGATCCCGGGAACAG+AGG | + | tig0024288:43874-43893 | Msa1415840:intron | 60.0% | |
| CTCTCCTCTCCTCTGTTCCC+GGG | - | tig0024288:43886-43905 | None:intergenic | 60.0% | |
| TGGAAGATCGGGTTCCCGGT+GGG | - | tig0024288:44306-44325 | None:intergenic | 60.0% | |
| CAGGTGGAAGATCGGGTTCC+CGG | - | tig0024288:44310-44329 | None:intergenic | 60.0% | |
| AGCGCTCCAGGTGGAAGATC+GGG | - | tig0024288:44317-44336 | None:intergenic | 60.0% | |
| CAGCGCTCCAGGTGGAAGAT+CGG | - | tig0024288:44318-44337 | None:intergenic | 60.0% | |
| ! | GAGCGCTGCGAACCAGAAGT+GGG | + | tig0024288:44330-44349 | Msa1415840:intron | 60.0% |
| GCTGCGAACCAGAAGTGGGA+CGG | + | tig0024288:44334-44353 | Msa1415840:intron | 60.0% | |
| CTGCGAACCAGAAGTGGGAC+GGG | + | tig0024288:44335-44354 | Msa1415840:intron | 60.0% | |
| TGCGAATCCCGTCCCACTTC+TGG | - | tig0024288:44345-44364 | None:intergenic | 60.0% | |
| ACGGGATTCGCATTCCCGTG+CGG | + | tig0024288:44353-44372 | Msa1415840:intron | 60.0% | |
| ACTGAGATGCACCGCTCCTC+CGG | + | tig0024288:44382-44401 | Msa1415840:intron | 60.0% | |
| AGCCAATACCGGCGAGATCC+CGG | - | tig0024288:44404-44423 | None:intergenic | 60.0% | |
| GCTTCCATCGTCCACGCTTC+AGG | + | tig0024288:44812-44831 | Msa1415840:intron | 60.0% | |
| GTCCACGCTTCAGGCCCATT+GGG | + | tig0024288:44821-44840 | Msa1415840:intron | 60.0% | |
| ACGCTTTAGCCCGGCCCAAT+GGG | - | tig0024288:44838-44857 | None:intergenic | 60.0% | |
| ! | AGCGTGAGGGGGTGTGTTAG+CGG | + | tig0024288:44853-44872 | Msa1415840:intron | 60.0% |
| GCACTCCTCACCGTACAAGC+CGG | + | tig0024288:44944-44963 | Msa1415840:intron | 60.0% | |
| GCACTCCTCACCGTACAAGC+CGG | + | tig0024288:44944-44963 | Msa1415840:intron | 60.0% | |
| ! | GTGGTGGGGACAAATCCTCC+TGG | - | tig0024288:45982-46001 | None:intergenic | 60.0% |
| GGCCATCTCATCGGTGAAGC+CGG | + | tig0024288:46314-46333 | Msa1415840:intron | 60.0% | |
| !! | CACCGGCTTCACCGATGAGA+TGG | - | tig0024288:46319-46338 | None:intergenic | 60.0% |
| CTTGCTGCTGCTGTTGGCGT+AGG | + | tig0024288:46633-46652 | Msa1415840:CDS | 60.0% | |
| GGGTGTCCATGGGGTTCACG+TGG | + | tig0024288:42928-42947 | Msa1415840:CDS | 65.0% | |
| ! | GAGGCACCACGTGAACCCCA+TGG | - | tig0024288:42937-42956 | None:intergenic | 65.0% |
| GGAGCGACCGACCCCAAAAG+TGG | + | tig0024288:43849-43868 | Msa1415840:intron | 65.0% | |
| GGATCCCGGGAACAGAGGAG+AGG | + | tig0024288:43879-43898 | Msa1415840:intron | 65.0% | |
| GGAAGATCGGGTTCCCGGTG+GGG | - | tig0024288:44305-44324 | None:intergenic | 65.0% | |
| GTGGAAGATCGGGTTCCCGG+TGG | - | tig0024288:44307-44326 | None:intergenic | 65.0% | |
| CGGGAACCCGATCTTCCACC+TGG | + | tig0024288:44308-44327 | Msa1415840:intron | 65.0% | |
| !! | CTTCTGGTTCGCAGCGCTCC+AGG | - | tig0024288:44329-44348 | None:intergenic | 65.0% |
| !! | GGAGCGCTGCGAACCAGAAG+TGG | + | tig0024288:44329-44348 | Msa1415840:intron | 65.0% |
| CTGAGATGCACCGCTCCTCC+GGG | + | tig0024288:44383-44402 | Msa1415840:intron | 65.0% | |
| CAATACCGGCGAGATCCCGG+AGG | - | tig0024288:44401-44420 | None:intergenic | 65.0% | |
| CTCCGGGATCTCGCCGGTAT+TGG | + | tig0024288:44399-44418 | Msa1415840:intron | 65.0% | |
| TGGGCCTGAAGCGTGGACGA+TGG | - | tig0024288:44819-44838 | None:intergenic | 65.0% | |
| CGTCCACGCTTCAGGCCCAT+TGG | + | tig0024288:44820-44839 | Msa1415840:intron | 65.0% | |
| ACGCTTCAGGCCCATTGGGC+CGG | + | tig0024288:44825-44844 | Msa1415840:intron | 65.0% | |
| CACGCTTTAGCCCGGCCCAA+TGG | - | tig0024288:44839-44858 | None:intergenic | 65.0% | |
| TTGGGCCGGGCTAAAGCGTG+AGG | + | tig0024288:44839-44858 | Msa1415840:intron | 65.0% | |
| TGGGCCGGGCTAAAGCGTGA+GGG | + | tig0024288:44840-44859 | Msa1415840:intron | 65.0% | |
| CACCCCCTCACGCTTTAGCC+CGG | - | tig0024288:44847-44866 | None:intergenic | 65.0% | |
| TTCCGAGAGCCGGACCCCAC+CGG | + | tig0024288:44288-44307 | Msa1415840:intron | 70.0% | |
| ATCGGGTTCCCGGTGGGGTC+CGG | - | tig0024288:44300-44319 | None:intergenic | 70.0% | |
| ! | CTGGTTCGCAGCGCTCCAGG+TGG | - | tig0024288:44326-44345 | None:intergenic | 70.0% |
| GGCCCAATGGGCCTGAAGCG+TGG | - | tig0024288:44826-44845 | None:intergenic | 70.0% | |
| CGCTTCAGGCCCATTGGGCC+GGG | + | tig0024288:44826-44845 | Msa1415840:intron | 70.0% | |
| GGGCCGGGCTAAAGCGTGAG+GGG | + | tig0024288:44841-44860 | Msa1415840:intron | 70.0% | |
| GGCCGGGCTAAAGCGTGAGG+GGG | + | tig0024288:44842-44861 | Msa1415840:intron | 70.0% | |
| TCCGAGAGCCGGACCCCACC+GGG | + | tig0024288:44289-44308 | Msa1415840:intron | 75.0% | |
| TCCCGGTGGGGTCCGGCTCT+CGG | - | tig0024288:44293-44312 | None:intergenic | 75.0% | |
| CCGGCGAGATCCCGGAGGAG+CGG | - | tig0024288:44396-44415 | None:intergenic | 75.0% | |
| CCGCTCCTCCGGGATCTCGC+CGG | + | tig0024288:44393-44412 | Msa1415840:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024288 | gene | 41739 | 46996 | 41739 | ID=Msa1415840;Name=Msa1415840 |
| tig0024288 | mRNA | 41739 | 46996 | 41739 | ID=Msa1415840-mRNA-1;Parent=Msa1415840;Name=Msa1415840-mRNA-1;_AED=0.19;_eAED=0.19;_QI=185|1|1|1|0.83|0.71|7|316|251 |
| tig0024288 | exon | 41739 | 41829 | 41739 | ID=Msa1415840-mRNA-1:exon:22631;Parent=Msa1415840-mRNA-1 |
| tig0024288 | exon | 42793 | 43056 | 42793 | ID=Msa1415840-mRNA-1:exon:22632;Parent=Msa1415840-mRNA-1 |
| tig0024288 | exon | 43169 | 43230 | 43169 | ID=Msa1415840-mRNA-1:exon:22633;Parent=Msa1415840-mRNA-1 |
| tig0024288 | exon | 43333 | 43411 | 43333 | ID=Msa1415840-mRNA-1:exon:22634;Parent=Msa1415840-mRNA-1 |
| tig0024288 | exon | 43493 | 43631 | 43493 | ID=Msa1415840-mRNA-1:exon:22635;Parent=Msa1415840-mRNA-1 |
| tig0024288 | exon | 45547 | 45660 | 45547 | ID=Msa1415840-mRNA-1:exon:22636;Parent=Msa1415840-mRNA-1 |
| tig0024288 | exon | 46489 | 46996 | 46489 | ID=Msa1415840-mRNA-1:exon:22637;Parent=Msa1415840-mRNA-1 |
| tig0024288 | five_prime_UTR | 41739 | 41829 | 41739 | ID=Msa1415840-mRNA-1:five_prime_utr;Parent=Msa1415840-mRNA-1 |
| tig0024288 | five_prime_UTR | 42793 | 42886 | 42793 | ID=Msa1415840-mRNA-1:five_prime_utr;Parent=Msa1415840-mRNA-1 |
| tig0024288 | CDS | 42887 | 43056 | 42887 | ID=Msa1415840-mRNA-1:cds;Parent=Msa1415840-mRNA-1 |
| tig0024288 | CDS | 43169 | 43230 | 43169 | ID=Msa1415840-mRNA-1:cds;Parent=Msa1415840-mRNA-1 |
| tig0024288 | CDS | 43333 | 43411 | 43333 | ID=Msa1415840-mRNA-1:cds;Parent=Msa1415840-mRNA-1 |
| tig0024288 | CDS | 43493 | 43631 | 43493 | ID=Msa1415840-mRNA-1:cds;Parent=Msa1415840-mRNA-1 |
| tig0024288 | CDS | 45547 | 45660 | 45547 | ID=Msa1415840-mRNA-1:cds;Parent=Msa1415840-mRNA-1 |
| tig0024288 | CDS | 46489 | 46680 | 46489 | ID=Msa1415840-mRNA-1:cds;Parent=Msa1415840-mRNA-1 |
| tig0024288 | three_prime_UTR | 46681 | 46996 | 46681 | ID=Msa1415840-mRNA-1:three_prime_utr;Parent=Msa1415840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
