AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060950 MtrunA17_Chr1g0160791 99.203 251 2 0 1 251 1 251 0.0 516
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060950 AT1G23110.7 69.721 251 73 2 1 251 1 248 4.47e-130 368
Msa0060950 AT1G23110.4 69.721 251 73 2 1 251 1 248 4.47e-130 368
Msa0060950 AT1G23110.1 69.721 251 73 2 1 251 1 248 4.47e-130 368
Msa0060950 AT1G23110.6 69.721 251 73 2 1 251 1 248 4.47e-130 368
Msa0060950 AT1G23110.3 69.721 251 73 2 1 251 1 248 4.47e-130 368
Msa0060950 AT1G23110.5 69.721 251 73 2 1 251 1 248 4.47e-130 368
Msa0060950 AT1G23110.2 69.721 251 73 2 1 251 1 248 4.47e-130 368
Msa0060950 AT1G70900.1 68.526 251 72 2 1 251 1 244 5.03e-128 362

Find 90 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGAAGATGTTTAATAAT+TGG 0.144161 1_2:+18923236 None:intergenic
CACGCATATTCGGCTTATTT+TGG 0.171631 1_2:+18928426 None:intergenic
TTCAGGTAGCATTTGCTAAA+AGG 0.205366 1_2:-18923722 Msa0060950:intron
TCTTCCAGTTAATCCATTAA+TGG 0.209417 1_2:-18924597 Msa0060950:CDS
TGAATAAGTGTAACCATTAA+TGG 0.230670 1_2:+18924584 None:intergenic
TTGTATGCCAATTCATTAAT+TGG 0.241173 1_2:-18926694 Msa0060950:CDS
ATGTTCATTAGTTAATTTAT+TGG 0.267527 1_2:-18923314 Msa0060950:three_prime_UTR
GCACAAAATGTCATCATTAA+TGG 0.269537 1_2:-18923661 Msa0060950:CDS
CTGGGCCAGCAATTTCTTGC+TGG 0.276545 1_2:+18927373 None:intergenic
ACCAGATGCAATTCAACTTC+TGG 0.290522 1_2:+18927354 None:intergenic
TTACTTTCTTCTGTTGTAGT+TGG 0.302779 1_2:-18923337 Msa0060950:three_prime_UTR
TTTATAATCTTAACTATTGC+TGG 0.304439 1_2:+18923434 None:intergenic
CACAAAATGTCATCATTAAT+GGG 0.310527 1_2:-18923660 Msa0060950:CDS
GTAACCATTAATGGATTAAC+TGG 0.336183 1_2:+18924593 None:intergenic
TTCACTCCAAGAGCTATAAA+AGG 0.340939 1_2:+18926826 None:intergenic
TTAGTTAATTTATTGGAGAT+AGG 0.353074 1_2:-18923307 Msa0060950:three_prime_UTR
TCATTAAGCAATAATATTAA+CGG 0.356709 1_2:+18923263 None:intergenic
CAAATAATAGCTGGTTTGAT+TGG 0.356731 1_2:-18928468 Msa0060950:five_prime_UTR
TCCAACTCCAATTAATGAAT+TGG 0.359861 1_2:+18926687 None:intergenic
GTTGAAGTTCCACCCGTTGA+TGG 0.369925 1_2:+18927202 None:intergenic
TGGCATCTTGCTGCTGCTGT+TGG 0.370168 1_2:-18923579 Msa0060950:CDS
CTTGCTGCTGCTGTTGGCGT+AGG 0.370230 1_2:-18923573 Msa0060950:CDS
TATATAGCTCCACGCATATT+CGG 0.382156 1_2:+18928416 None:intergenic
AGTTATGTTTATATTGTAGC+TGG 0.388062 1_2:-18923394 Msa0060950:three_prime_UTR
GTGTGAGCCATTCTCAAGTC+TGG 0.396348 1_2:+18923687 None:intergenic
TCAGGTAGCATTTGCTAAAA+GGG 0.403276 1_2:-18923721 Msa0060950:intron
GATTAAGATAGAAATTATAA+TGG 0.409267 1_2:+18923218 None:intergenic
ATGCCGCCATCAGCAACTTC+GGG 0.411544 1_2:+18924630 None:intergenic
CCAGATGCAATTCAACTTCT+GGG 0.413188 1_2:+18927355 None:intergenic
GCCAATTCATTAATTGGAGT+TGG 0.425449 1_2:-18926688 Msa0060950:CDS
TATTCATACTCTGCACATAA+TGG 0.426676 1_2:+18923490 None:intergenic
TTGGAGATAGGGATTTGTAT+AGG 0.428957 1_2:-18923295 Msa0060950:three_prime_UTR
GATGCCGCCATCAGCAACTT+CGG 0.434740 1_2:+18924629 None:intergenic
CTTAACTATTGCTGGTTACA+AGG 0.438636 1_2:+18923442 None:intergenic
CCCAGAAGTTGAATTGCATC+TGG 0.439703 1_2:-18927355 Msa0060950:five_prime_UTR
TAGTTAATTTATTGGAGATA+GGG 0.440772 1_2:-18923306 Msa0060950:three_prime_UTR
ACTTATTCACACTGGGATGA+TGG 0.450402 1_2:-18924570 Msa0060950:CDS
AGAGCCCTTGAGGGTGTCCA+TGG 0.461445 1_2:-18927289 Msa0060950:CDS
GTTATGTTTATATTGTAGCT+GGG 0.468914 1_2:-18923393 Msa0060950:three_prime_UTR
TGGTGCCAGCAAGAAATTGC+TGG 0.485808 1_2:-18927378 Msa0060950:five_prime_UTR
GGAGGTCTTCATCCATCAAC+GGG 0.486108 1_2:-18927214 Msa0060950:CDS
TACAGCACTCTTGAACCAAC+TGG 0.486971 1_2:-18927398 Msa0060950:five_prime_UTR
CTACTCGAGAAGCTTATTGC+AGG 0.492357 1_2:+18923548 None:intergenic
GAATTGCATCTGGTCTAGTC+AGG 0.495250 1_2:-18927345 Msa0060950:five_prime_UTR
GGAAGATGCTTACTTAAGTC+GGG 0.495469 1_2:+18928386 None:intergenic
TTACTCTCTGTCAAAGAAAA+CGG 0.507422 1_2:+18927244 None:intergenic
AGGAAGATGCTTACTTAAGT+CGG 0.509199 1_2:+18928385 None:intergenic
GAAGTAGAACAAATAATAGC+TGG 0.510746 1_2:-18928477 None:intergenic
TGCCATGCAGCATGAAGGTA+TGG 0.516087 1_2:+18923597 None:intergenic
GAGCCCTTGAGGGTGTCCAT+GGG 0.521864 1_2:-18927288 Msa0060950:CDS
ACATTACTTGTAGACGGGTA+TGG 0.528584 1_2:-18927050 Msa0060950:intron
CATTGTAGTGCTAGTTGTCA+TGG 0.530052 1_2:-18926997 Msa0060950:intron
AATTTCTTGCTGGCACCAGT+TGG 0.533337 1_2:+18927383 None:intergenic
GTCAAAGAAAACGGTGAATG+AGG 0.534729 1_2:+18927253 None:intergenic
TGGTTACACTTATTCACACT+GGG 0.539486 1_2:-18924577 Msa0060950:CDS
CCGTACTGCAGTGTCTGTCA+AGG 0.540712 1_2:-18924670 Msa0060950:intron
TTCATTAATTGGAGTTGGAG+TGG 0.540804 1_2:-18926683 Msa0060950:CDS
CTCCATACCTTCATGCTGCA+TGG 0.543276 1_2:-18923599 Msa0060950:CDS
ATGGTTACACTTATTCACAC+TGG 0.543526 1_2:-18924578 Msa0060950:CDS
AATCATAGTAGAGCCCTTGA+GGG 0.544572 1_2:-18927298 Msa0060950:CDS
AGCTGAGGAAATATTTGAGA+TGG 0.555169 1_2:-18926630 Msa0060950:CDS
CAAGATGCCATGCAGCATGA+AGG 0.556021 1_2:+18923592 None:intergenic
TGGATAGGTCTCAAGCATGC+AGG 0.558026 1_2:+18927018 None:intergenic
GAACCCCATGGACACCCTCA+AGG 0.559915 1_2:+18927284 None:intergenic
GAATCATAGTAGAGCCCTTG+AGG 0.562280 1_2:-18927299 Msa0060950:CDS
GAAAGATCCAGACTTGAGAA+TGG 0.562355 1_2:-18923694 Msa0060950:CDS
CAAAATAAGCCGAATATGCG+TGG 0.565542 1_2:-18928425 Msa0060950:five_prime_UTR
TGCATACACTACTAACATTG+TGG 0.582508 1_2:-18923520 Msa0060950:three_prime_UTR
CAACTAGCACTACAATGGAT+AGG 0.589791 1_2:+18927003 None:intergenic
TGGAGGTCTTCATCCATCAA+CGG 0.597327 1_2:-18927215 Msa0060950:CDS
CATGACAACTAGCACTACAA+TGG 0.598876 1_2:+18926998 None:intergenic
AACCCCATGGACACCCTCAA+GGG 0.598877 1_2:+18927285 None:intergenic
AGTGTGTATCATTGTTCAAG+AGG 0.603766 1_2:-18926655 Msa0060950:CDS
TGAAAACCCGAAGTTGCTGA+TGG 0.606713 1_2:-18924636 Msa0060950:CDS
CGTACTGCAGTGTCTGTCAA+GGG 0.610659 1_2:-18924669 Msa0060950:intron
CAAAATGTCATCATTAATGG+GGG 0.614239 1_2:-18923658 Msa0060950:CDS
GGGTGTCCATGGGGTTCACG+TGG 0.615207 1_2:-18927278 Msa0060950:CDS
ACAAAATGTCATCATTAATG+GGG 0.617550 1_2:-18923659 Msa0060950:CDS
ATTGTTCAAGAGGGAAGCTG+AGG 0.630623 1_2:-18926645 Msa0060950:CDS
CTCTTGGAGTGAATGCCCCA+AGG 0.633390 1_2:-18926816 Msa0060950:intron
GTGTGTATCATTGTTCAAGA+GGG 0.637169 1_2:-18926654 Msa0060950:CDS
GAGGCACCACGTGAACCCCA+TGG 0.642175 1_2:+18927272 None:intergenic
AGCCCTTGAGGGTGTCCATG+GGG 0.647945 1_2:-18927287 Msa0060950:CDS
ACAGAGAGTAATCAAAGTGG+AGG 0.655486 1_2:-18927232 Msa0060950:CDS
TTGACAGAGAGTAATCAAAG+TGG 0.672739 1_2:-18927235 Msa0060950:CDS
AAACCCGAAGTTGCTGATGG+CGG 0.674850 1_2:-18924633 Msa0060950:CDS
GGTCTTCATCCATCAACGGG+TGG 0.677085 1_2:-18927211 Msa0060950:CDS
TATTCACACTGGGATGATGG+AGG 0.677284 1_2:-18924567 Msa0060950:intron
AAAATGTCATCATTAATGGG+GGG 0.708086 1_2:-18923657 Msa0060950:CDS
TCAGGCACATGAGTCAACAG+AGG 0.745998 1_2:-18927327 Msa0060950:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAATAATAATATAT+TGG + chr1_2:18923575-18923594 None:intergenic 0.0%
!!! TTATTTAATTTTTATTTTTT+TGG - chr1_2:18926777-18926796 Msa0060950:intron 0.0%
!!! TATTTAATTTTTATTTTTTT+GGG - chr1_2:18926778-18926797 Msa0060950:intron 0.0%
!!! TTATTTATTTTTTATTTTTT+TGG - chr1_2:18926871-18926890 Msa0060950:CDS 0.0%
!!! TATTTATTTTTTATTTTTTT+GGG - chr1_2:18926872-18926891 Msa0060950:CDS 0.0%
!! AATATAAAACTTGAAATATA+GGG + chr1_2:18926937-18926956 None:intergenic 10.0%
!! AAATATAAAACTTGAAATAT+AGG + chr1_2:18926938-18926957 None:intergenic 10.0%
!! AACTAAAATAATAACAAATT+AGG + chr1_2:18926971-18926990 None:intergenic 10.0%
!! ATACTTCAATATTTATTTAT+CGG + chr1_2:18927327-18927346 None:intergenic 10.0%
!! TTTGATAAGGAAAAAAAAAA+AGG + chr1_2:18923350-18923369 None:intergenic 15.0%
!!! ATATTTAATTAGTAGTTTTC+TGG - chr1_2:18923661-18923680 Msa0060950:CDS 15.0%
!!! TTTGATTTAATGAAAATTCT+GGG - chr1_2:18923735-18923754 Msa0060950:intron 15.0%
!!! TTATTTTTTGTGATAGTATA+AGG - chr1_2:18924588-18924607 Msa0060950:CDS 15.0%
!! ATAGTAGAACAAAAAAAAAT+GGG - chr1_2:18925552-18925571 Msa0060950:intron 15.0%
!! AAAACAAAAAAAAAAGGTTT+AGG - chr1_2:18925642-18925661 Msa0060950:intron 15.0%
!! AAACAAAAAAAAAAGGTTTA+GGG - chr1_2:18925643-18925662 Msa0060950:intron 15.0%
!! TTATTACAATGAAATAATGA+AGG - chr1_2:18925969-18925988 Msa0060950:intron 15.0%
!!! CATGTTTATATTTTATATAG+AGG - chr1_2:18926501-18926520 Msa0060950:intron 15.0%
!! ATAATGTTAATTAGTTAACT+TGG + chr1_2:18927242-18927261 None:intergenic 15.0%
!!! AAATTTAAGACTTTATTTAC+GGG + chr1_2:18927708-18927727 None:intergenic 15.0%
!!! CAAATTTAAGACTTTATTTA+CGG + chr1_2:18927709-18927728 None:intergenic 15.0%
!!! ATTACATCTAATACTTTTTT+TGG + chr1_2:18927861-18927880 None:intergenic 15.0%
!! AAGAAAGTAAAAAAAAATAC+TGG + chr1_2:18928352-18928371 None:intergenic 15.0%
!! ATGTTCATTAGTTAATTTAT+TGG - chr1_2:18928385-18928404 Msa0060950:intron 15.0%
!! TCATTAAGCAATAATATTAA+CGG + chr1_2:18928439-18928458 None:intergenic 15.0%
!! GAGAATATGTGTTTATTTAT+AGG + chr1_2:18923466-18923485 None:intergenic 20.0%
!! TAATTTATTTACTTTGCTTC+AGG - chr1_2:18923522-18923541 Msa0060950:three_prime_UTR 20.0%
!!! TTCAATTAAAGGGATATTTT+GGG - chr1_2:18923620-18923639 Msa0060950:CDS 20.0%
!!! GTTTGATTTAATGAAAATTC+TGG - chr1_2:18923734-18923753 Msa0060950:intron 20.0%
!!! AGTTTAAAATATGACATCAT+AGG - chr1_2:18923839-18923858 Msa0060950:intron 20.0%
!!! TGCAAACATAATTTTGTTTA+TGG - chr1_2:18924010-18924029 Msa0060950:intron 20.0%
!!! TTTTATTGTTACATTGGTAT+TGG + chr1_2:18925485-18925504 None:intergenic 20.0%
!!! GCATTTTTTTATTGTTACAT+TGG + chr1_2:18925491-18925510 None:intergenic 20.0%
!! CATAGTAGAACAAAAAAAAA+TGG - chr1_2:18925551-18925570 Msa0060950:intron 20.0%
!! CAGTGAAAAACAAAAAAAAA+AGG - chr1_2:18925636-18925655 Msa0060950:intron 20.0%
!!! GTTTATATTTTATATAGAGG+AGG - chr1_2:18926504-18926523 Msa0060950:intron 20.0%
!! TGAATTTGTGAAAATTAACT+AGG + chr1_2:18926687-18926706 None:intergenic 20.0%
!!! GTTAATTTTCACAAATTCAA+TGG - chr1_2:18926688-18926707 Msa0060950:CDS 20.0%
!! CTAATTAACATTATATTTCG+AGG - chr1_2:18927248-18927267 Msa0060950:CDS 20.0%
!!! CTCAAAAATAAAAAGCATTA+TGG + chr1_2:18927408-18927427 None:intergenic 20.0%
!! CAAATTATTGTCAGTATTAA+TGG + chr1_2:18927497-18927516 None:intergenic 20.0%
!! TAATGCTAATGATACTTATA+AGG - chr1_2:18927561-18927580 Msa0060950:intron 20.0%
!! TAATGATACTTATAAGGATA+AGG - chr1_2:18927567-18927586 Msa0060950:intron 20.0%
!! AGATATTCAATATTACATTC+CGG - chr1_2:18927664-18927683 Msa0060950:intron 20.0%
!!! AATACTTTTCCTCTATAATA+TGG - chr1_2:18927832-18927851 Msa0060950:intron 20.0%
!! TTTATAATCTTAACTATTGC+TGG + chr1_2:18928268-18928287 None:intergenic 20.0%
!! TTAGTTAATTTATTGGAGAT+AGG - chr1_2:18928392-18928411 Msa0060950:intron 20.0%
!! TAGTTAATTTATTGGAGATA+GGG - chr1_2:18928393-18928412 Msa0060950:intron 20.0%
!! AATGGAAGATGTTTAATAAT+TGG + chr1_2:18928466-18928485 None:intergenic 20.0%
! AAAAAAAAGGAATAAGAGAG+AGG + chr1_2:18923337-18923356 None:intergenic 25.0%
!! GTTCAATTAAAGGGATATTT+TGG - chr1_2:18923619-18923638 Msa0060950:CDS 25.0%
!! TCAATTAAAGGGATATTTTG+GGG - chr1_2:18923621-18923640 Msa0060950:CDS 25.0%
! AGCATAAATCACAAAATGAT+GGG + chr1_2:18923783-18923802 None:intergenic 25.0%
! TAGCATAAATCACAAAATGA+TGG + chr1_2:18923784-18923803 None:intergenic 25.0%
!! TTTCAGTTATCTGAAATGTT+TGG - chr1_2:18923868-18923887 Msa0060950:intron 25.0%
! GTACATAATCTGTTATTGTT+TGG - chr1_2:18924048-18924067 Msa0060950:intron 25.0%
!!! TATTTTTATCGCAGAATTGT+TGG - chr1_2:18924272-18924291 Msa0060950:intron 25.0%
!! ATTTTTATCGCAGAATTGTT+GGG - chr1_2:18924273-18924292 Msa0060950:intron 25.0%
! AAAACAAGAACAACATCAAA+TGG + chr1_2:18924743-18924762 None:intergenic 25.0%
! CATAAGACTAGATTATTCTA+AGG + chr1_2:18924766-18924785 None:intergenic 25.0%
!!! GATGAATTTTTTTGCAATGT+AGG - chr1_2:18924964-18924983 Msa0060950:intron 25.0%
! TTGTATGCCAATTCATTAAT+TGG - chr1_2:18925005-18925024 Msa0060950:intron 25.0%
! AGATAGACATGAATAACTAA+AGG - chr1_2:18925142-18925161 Msa0060950:intron 25.0%
! AGACTATATATGTTATACTC+TGG - chr1_2:18925214-18925233 Msa0060950:intron 25.0%
! AGATTCAATGTAAATTCAAC+TGG - chr1_2:18925456-18925475 Msa0060950:intron 25.0%
! TTAAATTTGAACCGTTTGAA+GGG + chr1_2:18925745-18925764 None:intergenic 25.0%
! TTCAAACGGTTCAAATTTAA+GGG - chr1_2:18925745-18925764 Msa0060950:intron 25.0%
! TAAGAATCCTATCTATAGAA+GGG + chr1_2:18926174-18926193 None:intergenic 25.0%
! TCTTAGAAGAGTTTATATAG+AGG - chr1_2:18926189-18926208 Msa0060950:intron 25.0%
! TCTTAGAAGAGTTTATATAG+AGG - chr1_2:18926189-18926208 Msa0060950:intron 25.0%
! ATCTACATATTTCATTTCTG+TGG - chr1_2:18926636-18926655 Msa0060950:CDS 25.0%
!!! TTTTGGGTTAACTAAACATT+CGG - chr1_2:18926794-18926813 Msa0060950:intron 25.0%
!!! AGTACGGTTTTATAGAAAAT+AGG + chr1_2:18927016-18927035 None:intergenic 25.0%
! TGAATAAGTGTAACCATTAA+TGG + chr1_2:18927118-18927137 None:intergenic 25.0%
! TTGCTTTCAAATATTTGCAA+TGG - chr1_2:18927159-18927178 Msa0060950:intron 25.0%
! ATTATTGTCAGTATTAATGG+TGG + chr1_2:18927494-18927513 None:intergenic 25.0%
!! GACATATTTTACTCATTATG+TGG + chr1_2:18927642-18927661 None:intergenic 25.0%
! GATATTCAATATTACATTCC+GGG - chr1_2:18927665-18927684 Msa0060950:intron 25.0%
!!! TTTTGGTAACCATATTATAG+AGG + chr1_2:18927844-18927863 None:intergenic 25.0%
! CACAAAATGTCATCATTAAT+GGG - chr1_2:18928039-18928058 Msa0060950:intron 25.0%
! ACAAAATGTCATCATTAATG+GGG - chr1_2:18928040-18928059 Msa0060950:intron 25.0%
!!! AGTTTTAGGGAATAAATCAT+CGG + chr1_2:18928082-18928101 None:intergenic 25.0%
! AGTTATGTTTATATTGTAGC+TGG - chr1_2:18928305-18928324 Msa0060950:intron 25.0%
! GTTATGTTTATATTGTAGCT+GGG - chr1_2:18928306-18928325 Msa0060950:intron 25.0%
!!! AGCGCGTTTTTATTTTGATA+AGG + chr1_2:18923363-18923382 None:intergenic 30.0%
TGCTGTTAGAGTTCAATTAA+AGG - chr1_2:18923609-18923628 Msa0060950:CDS 30.0%
GCTGTTAGAGTTCAATTAAA+GGG - chr1_2:18923610-18923629 Msa0060950:CDS 30.0%
GCATAAATCACAAAATGATG+GGG + chr1_2:18923782-18923801 None:intergenic 30.0%
TCTGTTATTGTTTGGTTGTT+AGG - chr1_2:18924056-18924075 Msa0060950:intron 30.0%
CTGTTATTGTTTGGTTGTTA+GGG - chr1_2:18924057-18924076 Msa0060950:intron 30.0%
TTACTCTCTGTCAAAGAAAA+CGG + chr1_2:18924458-18924477 None:intergenic 30.0%
! TCAATTCCTTTTATAGCTCT+TGG - chr1_2:18924867-18924886 Msa0060950:intron 30.0%
TTGGAGGAAAATATTACCTT+GGG + chr1_2:18924902-18924921 None:intergenic 30.0%
ATTGGAGGAAAATATTACCT+TGG + chr1_2:18924903-18924922 None:intergenic 30.0%
! TAAGATATCTTTCTAGCCAA+AGG + chr1_2:18924937-18924956 None:intergenic 30.0%
TCCAACTCCAATTAATGAAT+TGG + chr1_2:18925015-18925034 None:intergenic 30.0%
CAATAATATGCAAAATCCCT+TGG - chr1_2:18925170-18925189 Msa0060950:intron 30.0%
!!! TCGCACTTTTTTTTTACCAA+GGG + chr1_2:18925189-18925208 None:intergenic 30.0%
!!! TTCGCACTTTTTTTTTACCA+AGG + chr1_2:18925190-18925209 None:intergenic 30.0%
TATATGTTATACTCTGGACT+TGG - chr1_2:18925220-18925239 Msa0060950:intron 30.0%
AGAGATTGTATAAGAAACAG+AGG - chr1_2:18925395-18925414 Msa0060950:intron 30.0%
AACACAGAACATGTAATGAA+TGG - chr1_2:18925523-18925542 Msa0060950:intron 30.0%
! AAAAAGGTTTAGGGTGAAAA+CGG - chr1_2:18925652-18925671 Msa0060950:intron 30.0%
CTTAAATTTGAACCGTTTGA+AGG + chr1_2:18925746-18925765 None:intergenic 30.0%
CTTCAAACGGTTCAAATTTA+AGG - chr1_2:18925744-18925763 Msa0060950:intron 30.0%
AAGAATCCTATCTATAGAAG+GGG + chr1_2:18926173-18926192 None:intergenic 30.0%
CTAAGAATCCTATCTATAGA+AGG + chr1_2:18926175-18926194 None:intergenic 30.0%
TAGAAGAGTTTATATAGAGG+AGG - chr1_2:18926192-18926211 Msa0060950:intron 30.0%
TATTGCAAAACATCAAGTGT+TGG - chr1_2:18926602-18926621 Msa0060950:CDS 30.0%
CATATTTCATTTCTGTGGTT+TGG - chr1_2:18926641-18926660 Msa0060950:CDS 30.0%
! AAATTCAATGGTTCTGTCTT+CGG - chr1_2:18926700-18926719 Msa0060950:CDS 30.0%
TGAAATATAGGGAAAAATGC+AGG + chr1_2:18926926-18926945 None:intergenic 30.0%
TCTTCCAGTTAATCCATTAA+TGG - chr1_2:18927102-18927121 Msa0060950:intron 30.0%
!! GTAACCATTAATGGATTAAC+TGG + chr1_2:18927109-18927128 None:intergenic 30.0%
TCTATGTTGTAAACATGTGT+AGG - chr1_2:18927364-18927383 Msa0060950:five_prime_UTR 30.0%
! AGTCTTAAATTTGAGTGTTG+TGG - chr1_2:18927716-18927735 Msa0060950:intron 30.0%
! TTAAATTTGAGTGTTGTGGA+CGG - chr1_2:18927720-18927739 Msa0060950:intron 30.0%
!!! ATTTGACAAGCCACTTTTAA+TGG + chr1_2:18927772-18927791 None:intergenic 30.0%
!! TATAGAGGAAAAGTATTCAC+CGG + chr1_2:18927829-18927848 None:intergenic 30.0%
GCACAAAATGTCATCATTAA+TGG - chr1_2:18928038-18928057 Msa0060950:intron 30.0%
CAAAATGTCATCATTAATGG+GGG - chr1_2:18928041-18928060 Msa0060950:intron 30.0%
AAAATGTCATCATTAATGGG+GGG - chr1_2:18928042-18928061 Msa0060950:intron 30.0%
TATTCATACTCTGCACATAA+TGG + chr1_2:18928212-18928231 None:intergenic 30.0%
TTACTTTCTTCTGTTGTAGT+TGG - chr1_2:18928362-18928381 Msa0060950:intron 30.0%
TATATAGCTCCACGCATATT+CGG + chr1_2:18923286-18923305 None:intergenic 35.0%
AGGAAGATGCTTACTTAAGT+CGG + chr1_2:18923317-18923336 None:intergenic 35.0%
TTTATAGGAGAAGTGAGATG+AGG + chr1_2:18923451-18923470 None:intergenic 35.0%
! ATTTACTTTGCTTCAGGTTC+AGG - chr1_2:18923528-18923547 Msa0060950:three_prime_UTR 35.0%
ACTCTAACAGCAATGAAACA+GGG + chr1_2:18923601-18923620 None:intergenic 35.0%
AACTCTAACAGCAATGAAAC+AGG + chr1_2:18923602-18923621 None:intergenic 35.0%
! AACCACTGTGATTTTGCTAA+TGG - chr1_2:18923921-18923940 Msa0060950:intron 35.0%
TACCATTAGCAAAATCACAG+TGG + chr1_2:18923926-18923945 None:intergenic 35.0%
! CTGTGATTTTGCTAATGGTA+AGG - chr1_2:18923926-18923945 Msa0060950:intron 35.0%
! TAATGGTAAGGTTTGAAGCT+TGG - chr1_2:18923938-18923957 Msa0060950:intron 35.0%
AGGTGTGTTTGACAAAATCA+CGG + chr1_2:18923966-18923985 None:intergenic 35.0%
! CAGTATTAGCTTAGCTGTAA+TGG + chr1_2:18924100-18924119 None:intergenic 35.0%
CATTACAGCTAAGCTAATAC+TGG - chr1_2:18924098-18924117 Msa0060950:intron 35.0%
!!! GTATCTAGCAGTTTTTTGTG+TGG - chr1_2:18924198-18924217 Msa0060950:intron 35.0%
TTGACAGAGAGTAATCAAAG+TGG - chr1_2:18924464-18924483 Msa0060950:intron 35.0%
ATGTAGTCGGTTAGTATTCA+GGG + chr1_2:18924633-18924652 None:intergenic 35.0%
AATGTAGTCGGTTAGTATTC+AGG + chr1_2:18924634-18924653 None:intergenic 35.0%
!! GAATAATCTAGTCTTATGCG+TGG - chr1_2:18924768-18924787 Msa0060950:intron 35.0%
AAGATGTTGATCACCTGATA+CGG + chr1_2:18924820-18924839 None:intergenic 35.0%
TTCACTCCAAGAGCTATAAA+AGG + chr1_2:18924876-18924895 None:intergenic 35.0%
TGGAGGAAAATATTACCTTG+GGG + chr1_2:18924901-18924920 None:intergenic 35.0%
! AAGGAATTTAGGATGATTGG+AGG + chr1_2:18924918-18924937 None:intergenic 35.0%
! CCAAAGGAATTTAGGATGAT+TGG + chr1_2:18924921-18924940 None:intergenic 35.0%
CCAATCATCCTAAATTCCTT+TGG - chr1_2:18924918-18924937 Msa0060950:intron 35.0%
! CTTTCTAGCCAAAGGAATTT+AGG + chr1_2:18924929-18924948 None:intergenic 35.0%
GCCAATTCATTAATTGGAGT+TGG - chr1_2:18925011-18925030 Msa0060950:intron 35.0%
TTCATTAATTGGAGTTGGAG+TGG - chr1_2:18925016-18925035 Msa0060950:intron 35.0%
AGTGTGTATCATTGTTCAAG+AGG - chr1_2:18925044-18925063 Msa0060950:intron 35.0%
GTGTGTATCATTGTTCAAGA+GGG - chr1_2:18925045-18925064 Msa0060950:intron 35.0%
AGCTGAGGAAATATTTGAGA+TGG - chr1_2:18925069-18925088 Msa0060950:intron 35.0%
TATACTCTGGACTTGGAAAT+TGG - chr1_2:18925227-18925246 Msa0060950:intron 35.0%
!! AGCGACATATTTTAGAGACT+TGG + chr1_2:18925261-18925280 None:intergenic 35.0%
TTAAACCCTCATAGTTCTCT+AGG + chr1_2:18925921-18925940 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_2:18926236-18926255 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_2:18926236-18926255 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_2:18926236-18926255 None:intergenic 35.0%
!! AACATCAAGTGTTGGCTAAT+TGG - chr1_2:18926610-18926629 Msa0060950:CDS 35.0%
GTTCATATAACTGACTGCTT+AGG - chr1_2:18926751-18926770 Msa0060950:intron 35.0%
GTTCATATAACTGACTGCTT+AGG - chr1_2:18926751-18926770 Msa0060950:intron 35.0%
ATGGTTACACTTATTCACAC+TGG - chr1_2:18927121-18927140 Msa0060950:intron 35.0%
TGGTTACACTTATTCACACT+GGG - chr1_2:18927122-18927141 Msa0060950:intron 35.0%
ATACCAACCACACAACAAAT+AGG - chr1_2:18927272-18927291 Msa0060950:CDS 35.0%
TACCAACCACACAACAAATA+GGG - chr1_2:18927273-18927292 Msa0060950:CDS 35.0%
TTGTCAGTATTAATGGTGGT+GGG + chr1_2:18927490-18927509 None:intergenic 35.0%
ATTGTCAGTATTAATGGTGG+TGG + chr1_2:18927491-18927510 None:intergenic 35.0%
ATTCAATATTACATTCCGGG+TGG - chr1_2:18927668-18927687 Msa0060950:intron 35.0%
! TAAATTTGAGTGTTGTGGAC+GGG - chr1_2:18927721-18927740 Msa0060950:intron 35.0%
TCAAATTCACCAACCAAGAT+TGG - chr1_2:18927786-18927805 Msa0060950:intron 35.0%
CTACGAAATATTGCTTCTTC+AGG - chr1_2:18927960-18927979 Msa0060950:intron 35.0%
! TTCAGGTAGCATTTGCTAAA+AGG - chr1_2:18927977-18927996 Msa0060950:intron 35.0%
! TCAGGTAGCATTTGCTAAAA+GGG - chr1_2:18927978-18927997 Msa0060950:intron 35.0%
!! CATGAAGGTATGGAGTTTTA+GGG + chr1_2:18928095-18928114 None:intergenic 35.0%
TGCATACACTACTAACATTG+TGG - chr1_2:18928179-18928198 Msa0060950:intron 35.0%
! CTTAACTATTGCTGGTTACA+AGG + chr1_2:18928260-18928279 None:intergenic 35.0%
TTGGAGATAGGGATTTGTAT+AGG - chr1_2:18928404-18928423 Msa0060950:five_prime_UTR 35.0%
GGGATTTGTATAGGAAAAAC+TGG - chr1_2:18928413-18928432 Msa0060950:five_prime_UTR 35.0%
! CACGCATATTCGGCTTATTT+TGG + chr1_2:18923276-18923295 None:intergenic 40.0%
CAAAATAAGCCGAATATGCG+TGG - chr1_2:18923274-18923293 Msa0060950:three_prime_UTR 40.0%
GGAAGATGCTTACTTAAGTC+GGG + chr1_2:18923316-18923335 None:intergenic 40.0%
! GTGGTTGATTTCAGTTGGTA+AGG + chr1_2:18923423-18923442 None:intergenic 40.0%
! TAGTGGTGGTTGATTTCAGT+TGG + chr1_2:18923428-18923447 None:intergenic 40.0%
CTCTAACAGCAATGAAACAG+GGG + chr1_2:18923600-18923619 None:intergenic 40.0%
! ACGTTGTACGTTTGGAATCA+AGG + chr1_2:18923986-18924005 None:intergenic 40.0%
TGATTCCAAACGTACAACGT+TGG - chr1_2:18923986-18924005 Msa0060950:intron 40.0%
ACAGCTAAGCTAATACTGGA+AGG - chr1_2:18924102-18924121 Msa0060950:intron 40.0%
CCAGATGCAATTCAACTTCT+GGG + chr1_2:18924347-18924366 None:intergenic 40.0%
ACCAGATGCAATTCAACTTC+TGG + chr1_2:18924348-18924367 None:intergenic 40.0%
AATCATAGTAGAGCCCTTGA+GGG - chr1_2:18924401-18924420 Msa0060950:intron 40.0%
GTCAAAGAAAACGGTGAATG+AGG + chr1_2:18924449-18924468 None:intergenic 40.0%
ACAGAGAGTAATCAAAGTGG+AGG - chr1_2:18924467-18924486 Msa0060950:intron 40.0%
CCGTCTACAAGTAATGTAGT+CGG + chr1_2:18924646-18924665 None:intergenic 40.0%
CCGACTACATTACTTGTAGA+CGG - chr1_2:18924643-18924662 Msa0060950:CDS 40.0%
CGACTACATTACTTGTAGAC+GGG - chr1_2:18924644-18924663 Msa0060950:CDS 40.0%
ACATTACTTGTAGACGGGTA+TGG - chr1_2:18924649-18924668 Msa0060950:CDS 40.0%
CAACTAGCACTACAATGGAT+AGG + chr1_2:18924699-18924718 None:intergenic 40.0%
CATGACAACTAGCACTACAA+TGG + chr1_2:18924704-18924723 None:intergenic 40.0%
CATTGTAGTGCTAGTTGTCA+TGG - chr1_2:18924702-18924721 Msa0060950:intron 40.0%
AGATGTTGATCACCTGATAC+GGG + chr1_2:18924819-18924838 None:intergenic 40.0%
AATACAGAGAGGGAATGGAA+AGG - chr1_2:18925677-18925696 Msa0060950:intron 40.0%
ATACAGAGAGGGAATGGAAA+GGG - chr1_2:18925678-18925697 Msa0060950:intron 40.0%
AACCCAAATTGCCCTTCAAA+CGG - chr1_2:18925731-18925750 Msa0060950:intron 40.0%
AACCGTTTGAAGGGCAATTT+GGG + chr1_2:18925736-18925755 None:intergenic 40.0%
GTGTTGTCAAATATCTGCCA+TGG - chr1_2:18926038-18926057 Msa0060950:intron 40.0%
GGTTGTCAAAATATCTGCCA+TGG + chr1_2:18926058-18926077 None:intergenic 40.0%
!! ATTTTGACAACCTCTGTGAC+CGG - chr1_2:18926066-18926085 Msa0060950:intron 40.0%
!!! AGCTTGAAATGGCGGTTTTT+TGG - chr1_2:18926133-18926152 Msa0060950:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_2:18926234-18926253 Msa0060950:intron 40.0%
ATACCATGTCACGAATATCG+AGG + chr1_2:18926260-18926279 None:intergenic 40.0%
GAATCCTATCTATCCGATGT+GGG + chr1_2:18926394-18926413 None:intergenic 40.0%
AGAATCCTATCTATCCGATG+TGG + chr1_2:18926395-18926414 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_2:18926234-18926253 Msa0060950:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_2:18926234-18926253 Msa0060950:intron 40.0%
ATATAGGGAAAAATGCAGGC+AGG + chr1_2:18926922-18926941 None:intergenic 40.0%
ACTTATTCACACTGGGATGA+TGG - chr1_2:18927129-18927148 Msa0060950:intron 40.0%
!! ACTTCTCCCTATTTGTTGTG+TGG + chr1_2:18927282-18927301 None:intergenic 40.0%
ACATGTGTAGGCATAAGAAG+TGG - chr1_2:18927376-18927395 Msa0060950:five_prime_UTR 40.0%
! CTCATTTAAAGTGTGAGTCC+AGG - chr1_2:18927454-18927473 Msa0060950:intron 40.0%
! ATTTAAAGTGTGAGTCCAGG+AGG - chr1_2:18927457-18927476 Msa0060950:intron 40.0%
! TGTCAGTATTAATGGTGGTG+GGG + chr1_2:18927489-18927508 None:intergenic 40.0%
GATCTAAGTCTAATTCCACC+CGG + chr1_2:18927686-18927705 None:intergenic 40.0%
GAAAGATCCAGACTTGAGAA+TGG - chr1_2:18928005-18928024 Msa0060950:intron 40.0%
!! GCATGAAGGTATGGAGTTTT+AGG + chr1_2:18928096-18928115 None:intergenic 40.0%
TACAGCACTCTTGAACCAAC+TGG - chr1_2:18924301-18924320 Msa0060950:intron 45.0%
AATTTCTTGCTGGCACCAGT+TGG + chr1_2:18924319-18924338 None:intergenic 45.0%
CCCAGAAGTTGAATTGCATC+TGG - chr1_2:18924344-18924363 Msa0060950:intron 45.0%
GAATTGCATCTGGTCTAGTC+AGG - chr1_2:18924354-18924373 Msa0060950:intron 45.0%
GAATCATAGTAGAGCCCTTG+AGG - chr1_2:18924400-18924419 Msa0060950:intron 45.0%
TGGAGGTCTTCATCCATCAA+CGG - chr1_2:18924484-18924503 Msa0060950:intron 45.0%
TATTGCTATGTCCCCGTATC+AGG - chr1_2:18924804-18924823 Msa0060950:intron 45.0%
GATGTTGATCACCTGATACG+GGG + chr1_2:18924818-18924837 None:intergenic 45.0%
ATTGTTCAAGAGGGAAGCTG+AGG - chr1_2:18925054-18925073 Msa0060950:intron 45.0%
AGAACCTAGGTAGTCAATCC+CGG - chr1_2:18925309-18925328 Msa0060950:intron 45.0%
TTATCCGGGATTGACTACCT+AGG + chr1_2:18925316-18925335 None:intergenic 45.0%
AGGTAGTCAATCCCGGATAA+AGG - chr1_2:18925316-18925335 Msa0060950:intron 45.0%
!! ATCCTGCTATCCCACTTTTG+GGG + chr1_2:18925356-18925375 None:intergenic 45.0%
!! GATCCTGCTATCCCACTTTT+GGG + chr1_2:18925357-18925376 None:intergenic 45.0%
TGAAAACGGCGAATACAGAG+AGG - chr1_2:18925666-18925685 Msa0060950:intron 45.0%
GAAAACGGCGAATACAGAGA+GGG - chr1_2:18925667-18925686 Msa0060950:intron 45.0%
TACAGAGAGGGAATGGAAAG+GGG - chr1_2:18925679-18925698 Msa0060950:intron 45.0%
ATGGAAAGGGGAAGAGAGAA+AGG - chr1_2:18925691-18925710 Msa0060950:intron 45.0%
TGGAAAGGGGAAGAGAGAAA+GGG - chr1_2:18925692-18925711 Msa0060950:intron 45.0%
GAACCGTTTGAAGGGCAATT+TGG + chr1_2:18925737-18925756 None:intergenic 45.0%
! AATCGTGATTTTCCGAGAGC+CGG - chr1_2:18925771-18925790 Msa0060950:intron 45.0%
ATCTCAGTGAAAAACCGCAC+GGG + chr1_2:18925863-18925882 None:intergenic 45.0%
CATCTCAGTGAAAAACCGCA+CGG + chr1_2:18925864-18925883 None:intergenic 45.0%
GTTCTCTAGGTAGCCAATAC+CGG + chr1_2:18925908-18925927 None:intergenic 45.0%
TGGCTACCTAGAGAACTATG+AGG - chr1_2:18925912-18925931 Msa0060950:intron 45.0%
GGCTACCTAGAGAACTATGA+GGG - chr1_2:18925913-18925932 Msa0060950:intron 45.0%
TTCTCCACACGTGTTACACT+TGG - chr1_2:18926016-18926035 Msa0060950:intron 45.0%
AACACCAAGTGTAACACGTG+TGG + chr1_2:18926023-18926042 None:intergenic 45.0%
!! TGTGACCGGTTTTCTAAGGA+TGG - chr1_2:18926080-18926099 Msa0060950:intron 45.0%
CTCTGCCATCCTTAGAAAAC+CGG + chr1_2:18926088-18926107 None:intergenic 45.0%
CATATCGGTCATATAACGCC+TGG + chr1_2:18926111-18926130 None:intergenic 45.0%
CAGGCGTTATATGACCGATA+TGG - chr1_2:18926109-18926128 Msa0060950:intron 45.0%
ACCGATATGGCAGCTTGAAA+TGG - chr1_2:18926122-18926141 Msa0060950:intron 45.0%
GCCATTTCAAGCTGCCATAT+CGG + chr1_2:18926126-18926145 None:intergenic 45.0%
GATATGGCAGCTTGAAATGG+CGG - chr1_2:18926125-18926144 Msa0060950:intron 45.0%
CTATCTATAGAAGGGGACCA+TGG + chr1_2:18926166-18926185 None:intergenic 45.0%
CATGGTCCCCTTCTATAGAT+AGG - chr1_2:18926164-18926183 Msa0060950:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+CGG + chr1_2:18926227-18926246 None:intergenic 45.0%
GACATGGTATCAGAGCCTAT+CGG - chr1_2:18926270-18926289 Msa0060950:intron 45.0%
ACATGGTATCAGAGCCTATC+GGG - chr1_2:18926271-18926290 Msa0060950:intron 45.0%
GACTAAATCCCACTGAGTGT+TGG + chr1_2:18926372-18926391 None:intergenic 45.0%
AGTGGGATTTAGTCCCACAT+CGG - chr1_2:18926378-18926397 Msa0060950:intron 45.0%
TAGTCCCACATCGGATAGAT+AGG - chr1_2:18926387-18926406 Msa0060950:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+CGG + chr1_2:18926227-18926246 None:intergenic 45.0%
TGCAAGTGTCACGAATATCG+AGG + chr1_2:18926483-18926502 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+CGG + chr1_2:18926227-18926246 None:intergenic 45.0%
TGCAAGTGTCACGAATATCG+AGG + chr1_2:18926483-18926502 None:intergenic 45.0%
TGAAAACCCGAAGTTGCTGA+TGG - chr1_2:18927063-18927082 Msa0060950:intron 45.0%
! TATTCACACTGGGATGATGG+AGG - chr1_2:18927132-18927151 Msa0060950:intron 45.0%
!! CTCCCTATTTGTTGTGTGGT+TGG + chr1_2:18927278-18927297 None:intergenic 45.0%
TGTTGTGGACGGGAAAAACA+AGG - chr1_2:18927731-18927750 Msa0060950:intron 45.0%
TGGACGGGAAAAACAAGGTT+GGG - chr1_2:18927736-18927755 Msa0060950:intron 45.0%
AGGGGAGACACCATTAAAAG+TGG - chr1_2:18927759-18927778 Msa0060950:intron 45.0%
ATGAGATGGCCAATCTTGGT+TGG + chr1_2:18927798-18927817 None:intergenic 45.0%
! ACCAAGATTGGCCATCTCAT+CGG - chr1_2:18927798-18927817 Msa0060950:intron 45.0%
CTACTCGAGAAGCTTATTGC+AGG + chr1_2:18928154-18928173 None:intergenic 45.0%
!!! ATATAATTTGTTATATTAAA+AGG - chr1_2:18924174-18924193 Msa0060950:intron 5.0%
! GAAGTGAGATGAGGTAGTGG+TGG + chr1_2:18923442-18923461 None:intergenic 50.0%
GGAGAAGTGAGATGAGGTAG+TGG + chr1_2:18923445-18923464 None:intergenic 50.0%
TGCAGCCAACGTTGTACGTT+TGG + chr1_2:18923994-18924013 None:intergenic 50.0%
! TGGTGCCAGCAAGAAATTGC+TGG - chr1_2:18924321-18924340 Msa0060950:intron 50.0%
TCAGGCACATGAGTCAACAG+AGG - chr1_2:18924372-18924391 Msa0060950:intron 50.0%
GGAGGTCTTCATCCATCAAC+GGG - chr1_2:18924485-18924504 Msa0060950:intron 50.0%
GTTGAAGTTCCACCCGTTGA+TGG + chr1_2:18924500-18924519 None:intergenic 50.0%
TGGATAGGTCTCAAGCATGC+AGG + chr1_2:18924684-18924703 None:intergenic 50.0%
GTCGCTGCAACCAATCTATC+CGG - chr1_2:18925275-18925294 Msa0060950:intron 50.0%
CTATCCAGAGCCGGATAGAT+TGG + chr1_2:18925288-18925307 None:intergenic 50.0%
!! CAATCTATCCGGCTCTGGAT+AGG - chr1_2:18925286-18925305 Msa0060950:intron 50.0%
TAGGTTCTCCTATCCAGAGC+CGG + chr1_2:18925297-18925316 None:intergenic 50.0%
GTCAATCCCGGATAAAGGCT+TGG - chr1_2:18925321-18925340 Msa0060950:intron 50.0%
!!! TGCTATCCCACTTTTGGGGT+CGG + chr1_2:18925352-18925371 None:intergenic 50.0%
! GGATCCTGCTATCCCACTTT+TGG + chr1_2:18925358-18925377 None:intergenic 50.0%
AAAGTGGGATAGCAGGATCC+CGG - chr1_2:18925358-18925377 Msa0060950:intron 50.0%
AGGGGAAGAGAGAAAGGGTT+AGG - chr1_2:18925697-18925716 Msa0060950:intron 50.0%
GGGGAAGAGAGAAAGGGTTA+GGG - chr1_2:18925698-18925717 Msa0060950:intron 50.0%
CCTTAGAAAACCGGTCACAG+AGG + chr1_2:18926079-18926098 None:intergenic 50.0%
!! CCTCTGTGACCGGTTTTCTA+AGG - chr1_2:18926076-18926095 Msa0060950:intron 50.0%
! TTTCTAAGGATGGCAGAGCC+AGG - chr1_2:18926090-18926109 Msa0060950:intron 50.0%
!!! GGTTTTTTGGCTTTCCGCCA+TGG - chr1_2:18926146-18926165 Msa0060950:intron 50.0%
TCTATAGAAGGGGACCATGG+CGG + chr1_2:18926163-18926182 None:intergenic 50.0%
!! CCGTACAAGCCGGTTTTGTA+AGG - chr1_2:18926224-18926243 Msa0060950:intron 50.0%
AGGCCTCGATATTCGTGACA+TGG - chr1_2:18926254-18926273 Msa0060950:intron 50.0%
AGCCTATCGGGTTCATCGTT+GGG - chr1_2:18926283-18926302 Msa0060950:intron 50.0%
!! CCGTACAAGCCGGTTTTGTA+AGG - chr1_2:18926224-18926243 Msa0060950:intron 50.0%
!! CCGTACAAGCCGGTTTTGTA+AGG - chr1_2:18926224-18926243 Msa0060950:intron 50.0%
CCTTGACAGACACTGCAGTA+CGG + chr1_2:18927032-18927051 None:intergenic 50.0%
CGTACTGCAGTGTCTGTCAA+GGG - chr1_2:18927030-18927049 Msa0060950:CDS 50.0%
AAACCCGAAGTTGCTGATGG+CGG - chr1_2:18927066-18927085 Msa0060950:intron 50.0%
GTGGACGGGAAAAACAAGGT+TGG - chr1_2:18927735-18927754 Msa0060950:intron 50.0%
ACGGGAAAAACAAGGTTGGG+AGG - chr1_2:18927739-18927758 Msa0060950:intron 50.0%
CGGGAAAAACAAGGTTGGGA+GGG - chr1_2:18927740-18927759 Msa0060950:intron 50.0%
GGGAAAAACAAGGTTGGGAG+GGG - chr1_2:18927741-18927760 Msa0060950:intron 50.0%
ACCGATGAGATGGCCAATCT+TGG + chr1_2:18927802-18927821 None:intergenic 50.0%
GTGTGAGCCATTCTCAAGTC+TGG + chr1_2:18928015-18928034 None:intergenic 50.0%
CTCCATACCTTCATGCTGCA+TGG - chr1_2:18928100-18928119 Msa0060950:intron 50.0%
TGCCATGCAGCATGAAGGTA+TGG + chr1_2:18928105-18928124 None:intergenic 50.0%
CAAGATGCCATGCAGCATGA+AGG + chr1_2:18928110-18928129 None:intergenic 50.0%
CTGGGCCAGCAATTTCTTGC+TGG + chr1_2:18924329-18924348 None:intergenic 55.0%
AACCCCATGGACACCCTCAA+GGG + chr1_2:18924417-18924436 None:intergenic 55.0%
GGTCTTCATCCATCAACGGG+TGG - chr1_2:18924488-18924507 Msa0060950:intron 55.0%
CTCTTGGAGTGAATGCCCCA+AGG - chr1_2:18924883-18924902 Msa0060950:intron 55.0%
GCAACCAATCTATCCGGCTC+TGG - chr1_2:18925281-18925300 Msa0060950:intron 55.0%
!! GGCTCTGGATAGGAGAACCT+AGG - chr1_2:18925296-18925315 Msa0060950:intron 55.0%
GTCGCTCCAAGCCTTTATCC+GGG + chr1_2:18925330-18925349 None:intergenic 55.0%
GGTCGCTCCAAGCCTTTATC+CGG + chr1_2:18925331-18925350 None:intergenic 55.0%
GACCCCAAAAGTGGGATAGC+AGG - chr1_2:18925351-18925370 Msa0060950:intron 55.0%
AAGTGGGATAGCAGGATCCC+GGG - chr1_2:18925359-18925378 Msa0060950:intron 55.0%
TCTCTCCTCTCCTCTGTTCC+CGG + chr1_2:18925380-18925399 None:intergenic 55.0%
CGGCGAATACAGAGAGGGAA+TGG - chr1_2:18925672-18925691 Msa0060950:intron 55.0%
ACACTCCTCACCGTACAAGC+CGG - chr1_2:18926214-18926233 Msa0060950:intron 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG + chr1_2:18926222-18926241 None:intergenic 55.0%
GAGCCTATCGGGTTCATCGT+TGG - chr1_2:18926282-18926301 Msa0060950:intron 55.0%
AGCCCAACGATGAACCCGAT+AGG + chr1_2:18926288-18926307 None:intergenic 55.0%
TGTTAGCGGCCAACACTCAG+TGG - chr1_2:18926360-18926379 Msa0060950:intron 55.0%
GTTAGCGGCCAACACTCAGT+GGG - chr1_2:18926361-18926380 Msa0060950:intron 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG + chr1_2:18926222-18926241 None:intergenic 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG + chr1_2:18926222-18926241 None:intergenic 55.0%
CCGTACTGCAGTGTCTGTCA+AGG - chr1_2:18927029-18927048 Msa0060950:CDS 55.0%
ATGCCGCCATCAGCAACTTC+GGG + chr1_2:18927072-18927091 None:intergenic 55.0%
GATGCCGCCATCAGCAACTT+CGG + chr1_2:18927073-18927092 None:intergenic 55.0%
TGGCATCTTGCTGCTGCTGT+TGG - chr1_2:18928120-18928139 Msa0060950:intron 55.0%
!! AGAGCCCTTGAGGGTGTCCA+TGG - chr1_2:18924410-18924429 Msa0060950:intron 60.0%
!! GAGCCCTTGAGGGTGTCCAT+GGG - chr1_2:18924411-18924430 Msa0060950:intron 60.0%
!! AGCCCTTGAGGGTGTCCATG+GGG - chr1_2:18924412-18924431 Msa0060950:intron 60.0%
GAACCCCATGGACACCCTCA+AGG + chr1_2:18924418-18924437 None:intergenic 60.0%
GAGCGACCGACCCCAAAAGT+GGG - chr1_2:18925343-18925362 Msa0060950:intron 60.0%
TAGCAGGATCCCGGGAACAG+AGG - chr1_2:18925367-18925386 Msa0060950:intron 60.0%
CTCTCCTCTCCTCTGTTCCC+GGG + chr1_2:18925379-18925398 None:intergenic 60.0%
TGGAAGATCGGGTTCCCGGT+GGG + chr1_2:18925799-18925818 None:intergenic 60.0%
CAGGTGGAAGATCGGGTTCC+CGG + chr1_2:18925803-18925822 None:intergenic 60.0%
AGCGCTCCAGGTGGAAGATC+GGG + chr1_2:18925810-18925829 None:intergenic 60.0%
CAGCGCTCCAGGTGGAAGAT+CGG + chr1_2:18925811-18925830 None:intergenic 60.0%
! GAGCGCTGCGAACCAGAAGT+GGG - chr1_2:18925823-18925842 Msa0060950:intron 60.0%
GCTGCGAACCAGAAGTGGGA+CGG - chr1_2:18925827-18925846 Msa0060950:intron 60.0%
CTGCGAACCAGAAGTGGGAC+GGG - chr1_2:18925828-18925847 Msa0060950:intron 60.0%
TGCGAATCCCGTCCCACTTC+TGG + chr1_2:18925838-18925857 None:intergenic 60.0%
ACGGGATTCGCATTCCCGTG+CGG - chr1_2:18925846-18925865 Msa0060950:intron 60.0%
ACTGAGATGCACCGCTCCTC+CGG - chr1_2:18925875-18925894 Msa0060950:intron 60.0%
AGCCAATACCGGCGAGATCC+CGG + chr1_2:18925897-18925916 None:intergenic 60.0%
GCTTCCATCGTCCACGCTTC+AGG - chr1_2:18926305-18926324 Msa0060950:intron 60.0%
GTCCACGCTTCAGGCCCATT+GGG - chr1_2:18926314-18926333 Msa0060950:intron 60.0%
ACGCTTTAGCCCGGCCCAAT+GGG + chr1_2:18926331-18926350 None:intergenic 60.0%
! AGCGTGAGGGGGTGTGTTAG+CGG - chr1_2:18926346-18926365 Msa0060950:intron 60.0%
GCACTCCTCACCGTACAAGC+CGG - chr1_2:18926437-18926456 Msa0060950:intron 60.0%
GCACTCCTCACCGTACAAGC+CGG - chr1_2:18926437-18926456 Msa0060950:intron 60.0%
! GTGGTGGGGACAAATCCTCC+TGG + chr1_2:18927475-18927494 None:intergenic 60.0%
GGCCATCTCATCGGTGAAGC+CGG - chr1_2:18927807-18927826 Msa0060950:intron 60.0%
!! CACCGGCTTCACCGATGAGA+TGG + chr1_2:18927812-18927831 None:intergenic 60.0%
CTTGCTGCTGCTGTTGGCGT+AGG - chr1_2:18928126-18928145 Msa0060950:intron 60.0%
GGGTGTCCATGGGGTTCACG+TGG - chr1_2:18924421-18924440 Msa0060950:intron 65.0%
! GAGGCACCACGTGAACCCCA+TGG + chr1_2:18924430-18924449 None:intergenic 65.0%
GGAGCGACCGACCCCAAAAG+TGG - chr1_2:18925342-18925361 Msa0060950:intron 65.0%
GGATCCCGGGAACAGAGGAG+AGG - chr1_2:18925372-18925391 Msa0060950:intron 65.0%
GGAAGATCGGGTTCCCGGTG+GGG + chr1_2:18925798-18925817 None:intergenic 65.0%
GTGGAAGATCGGGTTCCCGG+TGG + chr1_2:18925800-18925819 None:intergenic 65.0%
CGGGAACCCGATCTTCCACC+TGG - chr1_2:18925801-18925820 Msa0060950:intron 65.0%
!! CTTCTGGTTCGCAGCGCTCC+AGG + chr1_2:18925822-18925841 None:intergenic 65.0%
!! GGAGCGCTGCGAACCAGAAG+TGG - chr1_2:18925822-18925841 Msa0060950:intron 65.0%
CTGAGATGCACCGCTCCTCC+GGG - chr1_2:18925876-18925895 Msa0060950:intron 65.0%
CAATACCGGCGAGATCCCGG+AGG + chr1_2:18925894-18925913 None:intergenic 65.0%
CTCCGGGATCTCGCCGGTAT+TGG - chr1_2:18925892-18925911 Msa0060950:intron 65.0%
TGGGCCTGAAGCGTGGACGA+TGG + chr1_2:18926312-18926331 None:intergenic 65.0%
CGTCCACGCTTCAGGCCCAT+TGG - chr1_2:18926313-18926332 Msa0060950:intron 65.0%
ACGCTTCAGGCCCATTGGGC+CGG - chr1_2:18926318-18926337 Msa0060950:intron 65.0%
CACGCTTTAGCCCGGCCCAA+TGG + chr1_2:18926332-18926351 None:intergenic 65.0%
TTGGGCCGGGCTAAAGCGTG+AGG - chr1_2:18926332-18926351 Msa0060950:intron 65.0%
TGGGCCGGGCTAAAGCGTGA+GGG - chr1_2:18926333-18926352 Msa0060950:intron 65.0%
CACCCCCTCACGCTTTAGCC+CGG + chr1_2:18926340-18926359 None:intergenic 65.0%
TTCCGAGAGCCGGACCCCAC+CGG - chr1_2:18925781-18925800 Msa0060950:intron 70.0%
ATCGGGTTCCCGGTGGGGTC+CGG + chr1_2:18925793-18925812 None:intergenic 70.0%
! CTGGTTCGCAGCGCTCCAGG+TGG + chr1_2:18925819-18925838 None:intergenic 70.0%
GGCCCAATGGGCCTGAAGCG+TGG + chr1_2:18926319-18926338 None:intergenic 70.0%
CGCTTCAGGCCCATTGGGCC+GGG - chr1_2:18926319-18926338 Msa0060950:intron 70.0%
GGGCCGGGCTAAAGCGTGAG+GGG - chr1_2:18926334-18926353 Msa0060950:intron 70.0%
GGCCGGGCTAAAGCGTGAGG+GGG - chr1_2:18926335-18926354 Msa0060950:intron 70.0%
TCCGAGAGCCGGACCCCACC+GGG - chr1_2:18925782-18925801 Msa0060950:intron 75.0%
TCCCGGTGGGGTCCGGCTCT+CGG + chr1_2:18925786-18925805 None:intergenic 75.0%
CCGGCGAGATCCCGGAGGAG+CGG + chr1_2:18925889-18925908 None:intergenic 75.0%
CCGCTCCTCCGGGATCTCGC+CGG - chr1_2:18925886-18925905 Msa0060950:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 18923232 18928489 18923232 ID=Msa0060950;Name=Msa0060950
chr1_2 mRNA 18923232 18928489 18923232 ID=Msa0060950-mRNA-1;Parent=Msa0060950;Name=Msa0060950-mRNA-1;_AED=0.30;_eAED=0.30;_QI=185|1|1|1|0.83|0.71|7|316|251
chr1_2 exon 18923232 18923739 18923232 ID=Msa0060950-mRNA-1:exon:7323;Parent=Msa0060950-mRNA-1
chr1_2 exon 18924568 18924681 18924568 ID=Msa0060950-mRNA-1:exon:7322;Parent=Msa0060950-mRNA-1
chr1_2 exon 18926597 18926735 18926597 ID=Msa0060950-mRNA-1:exon:7321;Parent=Msa0060950-mRNA-1
chr1_2 exon 18926817 18926895 18926817 ID=Msa0060950-mRNA-1:exon:7320;Parent=Msa0060950-mRNA-1
chr1_2 exon 18926998 18927059 18926998 ID=Msa0060950-mRNA-1:exon:7319;Parent=Msa0060950-mRNA-1
chr1_2 exon 18927172 18927435 18927172 ID=Msa0060950-mRNA-1:exon:7318;Parent=Msa0060950-mRNA-1
chr1_2 exon 18928399 18928489 18928399 ID=Msa0060950-mRNA-1:exon:7317;Parent=Msa0060950-mRNA-1
chr1_2 five_prime_UTR 18928399 18928489 18928399 ID=Msa0060950-mRNA-1:five_prime_utr;Parent=Msa0060950-mRNA-1
chr1_2 five_prime_UTR 18927342 18927435 18927342 ID=Msa0060950-mRNA-1:five_prime_utr;Parent=Msa0060950-mRNA-1
chr1_2 CDS 18927172 18927341 18927172 ID=Msa0060950-mRNA-1:cds;Parent=Msa0060950-mRNA-1
chr1_2 CDS 18926998 18927059 18926998 ID=Msa0060950-mRNA-1:cds;Parent=Msa0060950-mRNA-1
chr1_2 CDS 18926817 18926895 18926817 ID=Msa0060950-mRNA-1:cds;Parent=Msa0060950-mRNA-1
chr1_2 CDS 18926597 18926735 18926597 ID=Msa0060950-mRNA-1:cds;Parent=Msa0060950-mRNA-1
chr1_2 CDS 18924568 18924681 18924568 ID=Msa0060950-mRNA-1:cds;Parent=Msa0060950-mRNA-1
chr1_2 CDS 18923548 18923739 18923548 ID=Msa0060950-mRNA-1:cds;Parent=Msa0060950-mRNA-1
chr1_2 three_prime_UTR 18923232 18923547 18923232 ID=Msa0060950-mRNA-1:three_prime_utr;Parent=Msa0060950-mRNA-1
Gene Sequence

>Msa0060950

ATGAGTCAACAGAGGACACTGAATCATAGTAGAGCCCTTGAGGGTGTCCATGGGGTTCACGTGGTGCCTCATTCACCGTTTTCTTTGACAGAGAGTAATCAAAGTGGAGGTCTTCATCCATCAACGGGTGGAACTTCAACTACTGAAGCAAATCAGCTTCTGTTAATGCAACGGGTATGGCAACAAAGACCTGCATGCTTGAGACCTATCCATTGTAGTGCTAGTTGTCATGGTGATCAACATCTTGCTGAAACAATTGCTAATGTGCTTACTTCAATTCCTTTTATAGCTCTTGGAGTGAATGCCCCAAGGAAGAATCTCAGTTGTAAGTTGTATGCCAATTCATTAATTGGAGTTGGAGTGGCGTCAAGTGTGTATCATTGTTCAAGAGGGAAGCTGAGGAAATATTTGAGATGGCTTGACTACACAATGATAGCTACAACAACTGTTTGTCTGTCAAGGGCTCTCAGAAATGAAAACCCGAAGTTGCTGATGGCGGCATCTGCAGCATTTCTTCCAGTTAATCCATTAATGGTTACACTTATTCACACTGGGATGATGGAGGTAGCATTTGCTAAAAGGGCATTGAAAGATCCAGACTTGAGAATGGCTCACACAGTGCACAAAATGTCATCATTAATGGGGGGCATGCTTTTTGTAGCCGATGATTTATTCCCTAAAACTCCATACCTTCATGCTGCATGGCATCTTGCTGCTGCTGTTGGCGTAGGCACCTGCAATAAGCTTCTCGAGTAG

Protein sequence

>Msa0060950

MSQQRTLNHSRALEGVHGVHVVPHSPFSLTESNQSGGLHPSTGGTSTTEANQLLLMQRVWQQRPACLRPIHCSASCHGDQHLAETIANVLTSIPFIALGVNAPRKNLSCKLYANSLIGVGVASSVYHCSRGKLRKYLRWLDYTMIATTTVCLSRALRNENPKLLMAASAAFLPVNPLMVTLIHTGMMEVAFAKRALKDPDLRMAHTVHKMSSLMGGMLFVADDLFPKTPYLHAAWHLAAAVGVGTCNKLLE*