Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049060 | B7FHH9 | 99.371 | 159 | 1 | 0 | 1 | 159 | 58 | 216 | 2.36e-112 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049020 | Msa0049060 | 0.849567 | 2.977050e-60 | -8.615850e-47 |
| Msa0049060 | Msa0060950 | 0.880483 | 5.289486e-70 | -8.615850e-47 |
| Msa0049060 | Msa0108810 | 0.890417 | 1.004238e-73 | -8.615850e-47 |
| Msa0049060 | Msa0291040 | 0.801344 | 9.413422e-49 | -8.615850e-47 |
| Msa0049060 | Msa0306130 | 0.804790 | 1.823854e-49 | -8.615850e-47 |
| Msa0049060 | Msa0782330 | 0.802050 | 6.742422e-49 | -8.615850e-47 |
| Msa0049060 | Msa1415840 | 0.801886 | 7.285798e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049060 | MtrunA17_Chr1g0160791 | 99.371 | 159 | 1 | 0 | 1 | 159 | 58 | 216 | 4.54e-116 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049060 | AT1G70900.1 | 74.691 | 162 | 39 | 1 | 1 | 162 | 53 | 212 | 5.96e-89 | 260 |
| Msa0049060 | AT1G23110.7 | 74.691 | 162 | 39 | 1 | 1 | 162 | 57 | 216 | 2.46e-87 | 256 |
| Msa0049060 | AT1G23110.4 | 74.691 | 162 | 39 | 1 | 1 | 162 | 57 | 216 | 2.46e-87 | 256 |
| Msa0049060 | AT1G23110.1 | 74.691 | 162 | 39 | 1 | 1 | 162 | 57 | 216 | 2.46e-87 | 256 |
| Msa0049060 | AT1G23110.6 | 74.691 | 162 | 39 | 1 | 1 | 162 | 57 | 216 | 2.46e-87 | 256 |
| Msa0049060 | AT1G23110.3 | 74.691 | 162 | 39 | 1 | 1 | 162 | 57 | 216 | 2.46e-87 | 256 |
| Msa0049060 | AT1G23110.5 | 74.691 | 162 | 39 | 1 | 1 | 162 | 57 | 216 | 2.46e-87 | 256 |
| Msa0049060 | AT1G23110.2 | 74.691 | 162 | 39 | 1 | 1 | 162 | 57 | 216 | 2.46e-87 | 256 |
Find 56 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGAAGATGTTTAATAAT+TGG | 0.144161 | 1_2:-2233379 | None:intergenic |
| TTCAGGTAGCATTTGCTAAA+AGG | 0.205366 | 1_2:+2232894 | Msa0049060:intron |
| TCTTCCAGTTAATCCATTAA+TGG | 0.209417 | 1_2:+2232019 | Msa0049060:CDS |
| TGAATAAGTGTAACCATTAA+TGG | 0.230670 | 1_2:-2232032 | None:intergenic |
| TTGTATGCCAATTCATTAAT+TGG | 0.241173 | 1_2:+2229922 | Msa0049060:CDS |
| ATGTTCATTAGTTAATTTAT+TGG | 0.267527 | 1_2:+2233301 | Msa0049060:three_prime_UTR |
| GCACAAAATGTCATCATTAA+TGG | 0.269537 | 1_2:+2232955 | Msa0049060:CDS |
| TTACTTTCTTCTGTTGTAGT+TGG | 0.302779 | 1_2:+2233278 | Msa0049060:three_prime_UTR |
| TTTATAATCTTAACTATTGC+TGG | 0.304439 | 1_2:-2233181 | None:intergenic |
| CACAAAATGTCATCATTAAT+GGG | 0.310527 | 1_2:+2232956 | Msa0049060:CDS |
| GTAACCATTAATGGATTAAC+TGG | 0.336183 | 1_2:-2232023 | None:intergenic |
| TTCACTCCAAGAGCTATAAA+AGG | 0.340939 | 1_2:-2229790 | None:intergenic |
| TTAGTTAATTTATTGGAGAT+AGG | 0.353074 | 1_2:+2233308 | Msa0049060:three_prime_UTR |
| TCATTAAGCAATAATATTAA+CGG | 0.356709 | 1_2:-2233352 | None:intergenic |
| TCCAACTCCAATTAATGAAT+TGG | 0.359861 | 1_2:-2229929 | None:intergenic |
| TGGCATCTTGCTGCTGCTGT+TGG | 0.370168 | 1_2:+2233036 | Msa0049060:three_prime_UTR |
| CTTGCTGCTGCTGTTGGCGT+AGG | 0.370230 | 1_2:+2233042 | Msa0049060:three_prime_UTR |
| AGTTATGTTTATATTGTAGC+TGG | 0.388062 | 1_2:+2233221 | Msa0049060:three_prime_UTR |
| GTGTGAGCCATTCTCAAGTC+TGG | 0.396348 | 1_2:-2232929 | None:intergenic |
| TCAGGTAGCATTTGCTAAAA+GGG | 0.403276 | 1_2:+2232895 | Msa0049060:intron |
| GATTAAGATAGAAATTATAA+TGG | 0.409267 | 1_2:-2233397 | None:intergenic |
| ATGCCGCCATCAGCAACTTC+GGG | 0.411544 | 1_2:-2231986 | None:intergenic |
| GCCAATTCATTAATTGGAGT+TGG | 0.425449 | 1_2:+2229928 | Msa0049060:CDS |
| TATTCATACTCTGCACATAA+TGG | 0.426676 | 1_2:-2233125 | None:intergenic |
| TTGGAGATAGGGATTTGTAT+AGG | 0.428957 | 1_2:+2233320 | Msa0049060:three_prime_UTR |
| GATGCCGCCATCAGCAACTT+CGG | 0.434740 | 1_2:-2231987 | None:intergenic |
| CTTAACTATTGCTGGTTACA+AGG | 0.438636 | 1_2:-2233173 | None:intergenic |
| TAGTTAATTTATTGGAGATA+GGG | 0.440772 | 1_2:+2233309 | Msa0049060:three_prime_UTR |
| ACTTATTCACACTGGGATGA+TGG | 0.450402 | 1_2:+2232046 | Msa0049060:CDS |
| GTTATGTTTATATTGTAGCT+GGG | 0.468914 | 1_2:+2233222 | Msa0049060:three_prime_UTR |
| CTACTCGAGAAGCTTATTGC+AGG | 0.492357 | 1_2:-2233067 | None:intergenic |
| TGCCATGCAGCATGAAGGTA+TGG | 0.516087 | 1_2:-2233018 | None:intergenic |
| ACATTACTTGTAGACGGGTA+TGG | 0.528584 | 1_2:+2229566 | None:intergenic |
| CATTGTAGTGCTAGTTGTCA+TGG | 0.530052 | 1_2:+2229619 | Msa0049060:CDS |
| TGGTTACACTTATTCACACT+GGG | 0.539486 | 1_2:+2232039 | Msa0049060:CDS |
| CCGTACTGCAGTGTCTGTCA+AGG | 0.540712 | 1_2:+2231946 | Msa0049060:intron |
| TTCATTAATTGGAGTTGGAG+TGG | 0.540804 | 1_2:+2229933 | Msa0049060:CDS |
| CTCCATACCTTCATGCTGCA+TGG | 0.543276 | 1_2:+2233016 | Msa0049060:three_prime_UTR |
| ATGGTTACACTTATTCACAC+TGG | 0.543526 | 1_2:+2232038 | Msa0049060:CDS |
| AGCTGAGGAAATATTTGAGA+TGG | 0.555169 | 1_2:+2229986 | Msa0049060:CDS |
| CAAGATGCCATGCAGCATGA+AGG | 0.556021 | 1_2:-2233023 | None:intergenic |
| TGGATAGGTCTCAAGCATGC+AGG | 0.558026 | 1_2:-2229598 | None:intergenic |
| GAAAGATCCAGACTTGAGAA+TGG | 0.562355 | 1_2:+2232922 | Msa0049060:CDS |
| TGCATACACTACTAACATTG+TGG | 0.582508 | 1_2:+2233095 | Msa0049060:three_prime_UTR |
| CAACTAGCACTACAATGGAT+AGG | 0.589791 | 1_2:-2229613 | None:intergenic |
| CATGACAACTAGCACTACAA+TGG | 0.598876 | 1_2:-2229618 | None:intergenic |
| AGTGTGTATCATTGTTCAAG+AGG | 0.603766 | 1_2:+2229961 | Msa0049060:CDS |
| TGAAAACCCGAAGTTGCTGA+TGG | 0.606713 | 1_2:+2231980 | Msa0049060:CDS |
| CGTACTGCAGTGTCTGTCAA+GGG | 0.610659 | 1_2:+2231947 | Msa0049060:intron |
| ACAAAATGTCATCATTAATG+GGG | 0.617550 | 1_2:+2232957 | Msa0049060:CDS |
| ATTGTTCAAGAGGGAAGCTG+AGG | 0.630623 | 1_2:+2229971 | Msa0049060:CDS |
| CTCTTGGAGTGAATGCCCCA+AGG | 0.633390 | 1_2:+2229800 | Msa0049060:CDS |
| GTGTGTATCATTGTTCAAGA+GGG | 0.637169 | 1_2:+2229962 | Msa0049060:CDS |
| CAAAATGTCATCATTAATGG+GGG | 0.655475 | 1_2:+2232958 | Msa0049060:CDS |
| AAACCCGAAGTTGCTGATGG+CGG | 0.674850 | 1_2:+2231983 | Msa0049060:CDS |
| TATTCACACTGGGATGATGG+AGG | 0.677284 | 1_2:+2232049 | Msa0049060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTAATTTTTATTTTTT+TGG | + | chr1_2:2231695-2231714 | Msa0049060:intron | 0.0% |
| !!! | TATTTAATTTTTATTTTTTT+GGG | + | chr1_2:2231696-2231715 | Msa0049060:intron | 0.0% |
| !!! | TTATTTATTTTTTATTTTTT+GGG | + | chr1_2:2231789-2231808 | Msa0049060:intron | 0.0% |
| !! | AAATAAAAACTTGAAATATA+GGG | - | chr1_2:2231854-2231873 | None:intergenic | 10.0% |
| !! | AAAATAAAAACTTGAAATAT+AGG | - | chr1_2:2231855-2231874 | None:intergenic | 10.0% |
| !! | AACTAAAATAATAACAAATT+AGG | - | chr1_2:2231888-2231907 | None:intergenic | 10.0% |
| !! | ATACTTCAATATTTATTTAT+CGG | - | chr1_2:2232244-2232263 | None:intergenic | 10.0% |
| !! | ATAGTAGAACAAAAAAAAAT+GGG | + | chr1_2:2230470-2230489 | Msa0049060:intron | 15.0% |
| !! | AAAACAAAAAAAAAAGGTTT+AGG | + | chr1_2:2230560-2230579 | Msa0049060:intron | 15.0% |
| !! | AAACAAAAAAAAAAGGTTTA+GGG | + | chr1_2:2230561-2230580 | Msa0049060:intron | 15.0% |
| !! | TTATTACAATGAAATAATGA+AGG | + | chr1_2:2230887-2230906 | Msa0049060:intron | 15.0% |
| !!! | CATGTTTATATTTTATATAG+AGG | + | chr1_2:2231419-2231438 | Msa0049060:intron | 15.0% |
| !! | ATAATGTTAATTAGTTAACT+TGG | - | chr1_2:2232159-2232178 | None:intergenic | 15.0% |
| !!! | AAATTTAAGACTTTATTTAC+GGG | - | chr1_2:2232625-2232644 | None:intergenic | 15.0% |
| !!! | CAAATTTAAGACTTTATTTA+CGG | - | chr1_2:2232626-2232645 | None:intergenic | 15.0% |
| !!! | ATTACATCTAATACTTTTTT+TGG | - | chr1_2:2232778-2232797 | None:intergenic | 15.0% |
| !! | AAGAAAGTAAAAAAAAATAC+TGG | - | chr1_2:2233268-2233287 | None:intergenic | 15.0% |
| !! | ATGTTCATTAGTTAATTTAT+TGG | + | chr1_2:2233301-2233320 | Msa0049060:three_prime_UTR | 15.0% |
| !! | TCATTAAGCAATAATATTAA+CGG | - | chr1_2:2233355-2233374 | None:intergenic | 15.0% |
| !!! | TTTTATTGTTACATTGGTAT+TGG | - | chr1_2:2230403-2230422 | None:intergenic | 20.0% |
| !!! | GCATTTTTTTATTGTTACAT+TGG | - | chr1_2:2230409-2230428 | None:intergenic | 20.0% |
| !! | CATAGTAGAACAAAAAAAAA+TGG | + | chr1_2:2230469-2230488 | Msa0049060:intron | 20.0% |
| !! | CAGTGAAAAACAAAAAAAAA+AGG | + | chr1_2:2230554-2230573 | Msa0049060:intron | 20.0% |
| !!! | GTTTATATTTTATATAGAGG+AGG | + | chr1_2:2231422-2231441 | Msa0049060:intron | 20.0% |
| !! | TGAATTTGTGAAAATTAACT+AGG | - | chr1_2:2231605-2231624 | None:intergenic | 20.0% |
| !!! | GTTAATTTTCACAAATTCAA+TGG | + | chr1_2:2231606-2231625 | Msa0049060:intron | 20.0% |
| !! | CTAATTAACATTATATTTCG+AGG | + | chr1_2:2232165-2232184 | Msa0049060:intron | 20.0% |
| !!! | CTCAAAAATAAAAAGCATTA+TGG | - | chr1_2:2232325-2232344 | None:intergenic | 20.0% |
| !! | CAAATTATTGTCAGTATTAA+TGG | - | chr1_2:2232414-2232433 | None:intergenic | 20.0% |
| !! | TAATGCTAATGATACTTATA+AGG | + | chr1_2:2232478-2232497 | Msa0049060:intron | 20.0% |
| !! | TAATGATACTTATAAGGATA+AGG | + | chr1_2:2232484-2232503 | Msa0049060:intron | 20.0% |
| !! | AGATATTCAATATTACATTC+CGG | + | chr1_2:2232581-2232600 | Msa0049060:intron | 20.0% |
| !!! | AATACTTTTCCTCTATAATA+TGG | + | chr1_2:2232749-2232768 | Msa0049060:intron | 20.0% |
| !! | TTTATAATCTTAACTATTGC+TGG | - | chr1_2:2233184-2233203 | None:intergenic | 20.0% |
| !! | TTAGTTAATTTATTGGAGAT+AGG | + | chr1_2:2233308-2233327 | Msa0049060:three_prime_UTR | 20.0% |
| !! | TAGTTAATTTATTGGAGATA+GGG | + | chr1_2:2233309-2233328 | Msa0049060:three_prime_UTR | 20.0% |
| !! | AATGGAAGATGTTTAATAAT+TGG | - | chr1_2:2233382-2233401 | None:intergenic | 20.0% |
| ! | AAAACAAGAACAACATCAAA+TGG | - | chr1_2:2229660-2229679 | None:intergenic | 25.0% |
| ! | CATAAGACTAGATTATTCTA+AGG | - | chr1_2:2229683-2229702 | None:intergenic | 25.0% |
| !!! | GATGAATTTTTTTGCAATGT+AGG | + | chr1_2:2229881-2229900 | Msa0049060:intron | 25.0% |
| ! | TTGTATGCCAATTCATTAAT+TGG | + | chr1_2:2229922-2229941 | Msa0049060:CDS | 25.0% |
| ! | AGATAGACATGAATAACTAA+AGG | + | chr1_2:2230059-2230078 | Msa0049060:intron | 25.0% |
| ! | AGACTATATATGTTATACTC+TGG | + | chr1_2:2230131-2230150 | Msa0049060:intron | 25.0% |
| ! | AGATTCAATGTAAATTCAAC+TGG | + | chr1_2:2230374-2230393 | Msa0049060:intron | 25.0% |
| ! | TTAAATTTGAACCGTTTGAA+GGG | - | chr1_2:2230663-2230682 | None:intergenic | 25.0% |
| ! | TTCAAACGGTTCAAATTTAA+GGG | + | chr1_2:2230663-2230682 | Msa0049060:intron | 25.0% |
| ! | TAAGAATCCTATCTATAGAA+GGG | - | chr1_2:2231092-2231111 | None:intergenic | 25.0% |
| ! | TCTTAGAAGAGTTTATATAG+AGG | + | chr1_2:2231107-2231126 | Msa0049060:intron | 25.0% |
| ! | TCTTAGAAGAGTTTATATAG+AGG | + | chr1_2:2231107-2231126 | Msa0049060:intron | 25.0% |
| ! | ATCTACATATTTCATTTCTG+TGG | + | chr1_2:2231554-2231573 | Msa0049060:intron | 25.0% |
| !!! | TTTTGGGTTAACTAAACATT+CGG | + | chr1_2:2231712-2231731 | Msa0049060:intron | 25.0% |
| !!! | AGTACGGTTTTATAGAAAAT+AGG | - | chr1_2:2231933-2231952 | None:intergenic | 25.0% |
| ! | TGAATAAGTGTAACCATTAA+TGG | - | chr1_2:2232035-2232054 | None:intergenic | 25.0% |
| ! | TTGCTTTCAAATATTTGCAA+TGG | + | chr1_2:2232076-2232095 | Msa0049060:intron | 25.0% |
| ! | ATTATTGTCAGTATTAATGG+TGG | - | chr1_2:2232411-2232430 | None:intergenic | 25.0% |
| !! | GACATATTTTACTCATTATG+TGG | - | chr1_2:2232559-2232578 | None:intergenic | 25.0% |
| ! | GATATTCAATATTACATTCC+GGG | + | chr1_2:2232582-2232601 | Msa0049060:intron | 25.0% |
| !!! | TTTTGGTAACCATATTATAG+AGG | - | chr1_2:2232761-2232780 | None:intergenic | 25.0% |
| ! | CACAAAATGTCATCATTAAT+GGG | + | chr1_2:2232956-2232975 | Msa0049060:CDS | 25.0% |
| ! | ACAAAATGTCATCATTAATG+GGG | + | chr1_2:2232957-2232976 | Msa0049060:CDS | 25.0% |
| !!! | AGTTTTAGGGAATAAATCAT+CGG | - | chr1_2:2232998-2233017 | None:intergenic | 25.0% |
| ! | AGTTATGTTTATATTGTAGC+TGG | + | chr1_2:2233221-2233240 | Msa0049060:three_prime_UTR | 25.0% |
| ! | GTTATGTTTATATTGTAGCT+GGG | + | chr1_2:2233222-2233241 | Msa0049060:three_prime_UTR | 25.0% |
| ! | TCAATTCCTTTTATAGCTCT+TGG | + | chr1_2:2229784-2229803 | Msa0049060:CDS | 30.0% |
| TTGGAGGAAAATATTACCTT+GGG | - | chr1_2:2229819-2229838 | None:intergenic | 30.0% | |
| ATTGGAGGAAAATATTACCT+TGG | - | chr1_2:2229820-2229839 | None:intergenic | 30.0% | |
| ! | TAAGATATCTTTCTAGCCAA+AGG | - | chr1_2:2229854-2229873 | None:intergenic | 30.0% |
| TCCAACTCCAATTAATGAAT+TGG | - | chr1_2:2229932-2229951 | None:intergenic | 30.0% | |
| CAATAATATGCAAAATCCCT+TGG | + | chr1_2:2230087-2230106 | Msa0049060:intron | 30.0% | |
| !!! | TCGCACTTTTTTTTTACCAA+GGG | - | chr1_2:2230106-2230125 | None:intergenic | 30.0% |
| !!! | TTCGCACTTTTTTTTTACCA+AGG | - | chr1_2:2230107-2230126 | None:intergenic | 30.0% |
| TATATGTTATACTCTGGACT+TGG | + | chr1_2:2230137-2230156 | Msa0049060:intron | 30.0% | |
| AGAGATTGTATAAGAAACAG+AGG | + | chr1_2:2230313-2230332 | Msa0049060:intron | 30.0% | |
| AACACAGAACATGTAATGAA+TGG | + | chr1_2:2230441-2230460 | Msa0049060:intron | 30.0% | |
| ! | AAAAAGGTTTAGGGTGAAAA+CGG | + | chr1_2:2230570-2230589 | Msa0049060:intron | 30.0% |
| CTTAAATTTGAACCGTTTGA+AGG | - | chr1_2:2230664-2230683 | None:intergenic | 30.0% | |
| CTTCAAACGGTTCAAATTTA+AGG | + | chr1_2:2230662-2230681 | Msa0049060:intron | 30.0% | |
| AAGAATCCTATCTATAGAAG+GGG | - | chr1_2:2231091-2231110 | None:intergenic | 30.0% | |
| CTAAGAATCCTATCTATAGA+AGG | - | chr1_2:2231093-2231112 | None:intergenic | 30.0% | |
| TAGAAGAGTTTATATAGAGG+AGG | + | chr1_2:2231110-2231129 | Msa0049060:intron | 30.0% | |
| TATTGCAAAACATCAAGTGT+TGG | + | chr1_2:2231520-2231539 | Msa0049060:intron | 30.0% | |
| CATATTTCATTTCTGTGGTT+TGG | + | chr1_2:2231559-2231578 | Msa0049060:intron | 30.0% | |
| ! | AAATTCAATGGTTCTGTCTT+CGG | + | chr1_2:2231618-2231637 | Msa0049060:intron | 30.0% |
| TGAAATATAGGGAAAAATGC+AGG | - | chr1_2:2231843-2231862 | None:intergenic | 30.0% | |
| TCTTCCAGTTAATCCATTAA+TGG | + | chr1_2:2232019-2232038 | Msa0049060:CDS | 30.0% | |
| !! | GTAACCATTAATGGATTAAC+TGG | - | chr1_2:2232026-2232045 | None:intergenic | 30.0% |
| TCTATGTTGTAAACATGTGT+AGG | + | chr1_2:2232281-2232300 | Msa0049060:intron | 30.0% | |
| ! | AGTCTTAAATTTGAGTGTTG+TGG | + | chr1_2:2232633-2232652 | Msa0049060:intron | 30.0% |
| ! | TTAAATTTGAGTGTTGTGGA+CGG | + | chr1_2:2232637-2232656 | Msa0049060:intron | 30.0% |
| !!! | ATTTGACAAGCCACTTTTAA+TGG | - | chr1_2:2232689-2232708 | None:intergenic | 30.0% |
| !! | TATAGAGGAAAAGTATTCAC+CGG | - | chr1_2:2232746-2232765 | None:intergenic | 30.0% |
| GCACAAAATGTCATCATTAA+TGG | + | chr1_2:2232955-2232974 | Msa0049060:CDS | 30.0% | |
| CAAAATGTCATCATTAATGG+GGG | + | chr1_2:2232958-2232977 | Msa0049060:CDS | 30.0% | |
| TATTCATACTCTGCACATAA+TGG | - | chr1_2:2233128-2233147 | None:intergenic | 30.0% | |
| TTACTTTCTTCTGTTGTAGT+TGG | + | chr1_2:2233278-2233297 | Msa0049060:three_prime_UTR | 30.0% | |
| !! | GAATAATCTAGTCTTATGCG+TGG | + | chr1_2:2229685-2229704 | Msa0049060:intron | 35.0% |
| AAGATGTTGATCACCTGATA+CGG | - | chr1_2:2229737-2229756 | None:intergenic | 35.0% | |
| TTCACTCCAAGAGCTATAAA+AGG | - | chr1_2:2229793-2229812 | None:intergenic | 35.0% | |
| TGGAGGAAAATATTACCTTG+GGG | - | chr1_2:2229818-2229837 | None:intergenic | 35.0% | |
| ! | AAGGAATTTAGGATGATTGG+AGG | - | chr1_2:2229835-2229854 | None:intergenic | 35.0% |
| ! | CCAAAGGAATTTAGGATGAT+TGG | - | chr1_2:2229838-2229857 | None:intergenic | 35.0% |
| CCAATCATCCTAAATTCCTT+TGG | + | chr1_2:2229835-2229854 | Msa0049060:intron | 35.0% | |
| ! | CTTTCTAGCCAAAGGAATTT+AGG | - | chr1_2:2229846-2229865 | None:intergenic | 35.0% |
| GCCAATTCATTAATTGGAGT+TGG | + | chr1_2:2229928-2229947 | Msa0049060:CDS | 35.0% | |
| TTCATTAATTGGAGTTGGAG+TGG | + | chr1_2:2229933-2229952 | Msa0049060:CDS | 35.0% | |
| AGTGTGTATCATTGTTCAAG+AGG | + | chr1_2:2229961-2229980 | Msa0049060:CDS | 35.0% | |
| GTGTGTATCATTGTTCAAGA+GGG | + | chr1_2:2229962-2229981 | Msa0049060:CDS | 35.0% | |
| AGCTGAGGAAATATTTGAGA+TGG | + | chr1_2:2229986-2230005 | Msa0049060:CDS | 35.0% | |
| TATACTCTGGACTTGGAAAT+TGG | + | chr1_2:2230144-2230163 | Msa0049060:intron | 35.0% | |
| !! | AGCGACATATTTTAGAGACT+TGG | - | chr1_2:2230178-2230197 | None:intergenic | 35.0% |
| TTAAACCCTCATAGTTCTCT+AGG | - | chr1_2:2230839-2230858 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr1_2:2231154-2231173 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr1_2:2231154-2231173 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr1_2:2231154-2231173 | None:intergenic | 35.0% | |
| !! | AACATCAAGTGTTGGCTAAT+TGG | + | chr1_2:2231528-2231547 | Msa0049060:intron | 35.0% |
| GTTCATATAACTGACTGCTT+AGG | + | chr1_2:2231669-2231688 | Msa0049060:intron | 35.0% | |
| GTTCATATAACTGACTGCTT+AGG | + | chr1_2:2231669-2231688 | Msa0049060:intron | 35.0% | |
| ATGGTTACACTTATTCACAC+TGG | + | chr1_2:2232038-2232057 | Msa0049060:CDS | 35.0% | |
| TGGTTACACTTATTCACACT+GGG | + | chr1_2:2232039-2232058 | Msa0049060:CDS | 35.0% | |
| ACTTGGTCTGAATGCTTTAT+TGG | - | chr1_2:2232142-2232161 | None:intergenic | 35.0% | |
| ATACCAACCACACAACAAAT+AGG | + | chr1_2:2232189-2232208 | Msa0049060:intron | 35.0% | |
| TACCAACCACACAACAAATA+GGG | + | chr1_2:2232190-2232209 | Msa0049060:intron | 35.0% | |
| TTGTCAGTATTAATGGTGGT+GGG | - | chr1_2:2232407-2232426 | None:intergenic | 35.0% | |
| ATTGTCAGTATTAATGGTGG+TGG | - | chr1_2:2232408-2232427 | None:intergenic | 35.0% | |
| ATTCAATATTACATTCCGGG+TGG | + | chr1_2:2232585-2232604 | Msa0049060:intron | 35.0% | |
| ! | TAAATTTGAGTGTTGTGGAC+GGG | + | chr1_2:2232638-2232657 | Msa0049060:intron | 35.0% |
| TCAAATTCACCAACCAAGAT+TGG | + | chr1_2:2232703-2232722 | Msa0049060:intron | 35.0% | |
| CTACGAAATATTGCTTCTTC+AGG | + | chr1_2:2232877-2232896 | Msa0049060:intron | 35.0% | |
| ! | TTCAGGTAGCATTTGCTAAA+AGG | + | chr1_2:2232894-2232913 | Msa0049060:intron | 35.0% |
| ! | TCAGGTAGCATTTGCTAAAA+GGG | + | chr1_2:2232895-2232914 | Msa0049060:intron | 35.0% |
| !! | CATGAAGGTATGGAGTTTTA+GGG | - | chr1_2:2233011-2233030 | None:intergenic | 35.0% |
| TGCATACACTACTAACATTG+TGG | + | chr1_2:2233095-2233114 | Msa0049060:three_prime_UTR | 35.0% | |
| ! | CTTAACTATTGCTGGTTACA+AGG | - | chr1_2:2233176-2233195 | None:intergenic | 35.0% |
| TTGGAGATAGGGATTTGTAT+AGG | + | chr1_2:2233320-2233339 | Msa0049060:three_prime_UTR | 35.0% | |
| GGGATTTGTATAGGAAAAAC+TGG | + | chr1_2:2233329-2233348 | Msa0049060:three_prime_UTR | 35.0% | |
| CAACTAGCACTACAATGGAT+AGG | - | chr1_2:2229616-2229635 | None:intergenic | 40.0% | |
| CATGACAACTAGCACTACAA+TGG | - | chr1_2:2229621-2229640 | None:intergenic | 40.0% | |
| CATTGTAGTGCTAGTTGTCA+TGG | + | chr1_2:2229619-2229638 | Msa0049060:CDS | 40.0% | |
| AGATGTTGATCACCTGATAC+GGG | - | chr1_2:2229736-2229755 | None:intergenic | 40.0% | |
| AATACAGAGAGGGAATGGAA+AGG | + | chr1_2:2230595-2230614 | Msa0049060:intron | 40.0% | |
| ATACAGAGAGGGAATGGAAA+GGG | + | chr1_2:2230596-2230615 | Msa0049060:intron | 40.0% | |
| AACCCAAATTGCCCTTCAAA+CGG | + | chr1_2:2230649-2230668 | Msa0049060:intron | 40.0% | |
| AACCGTTTGAAGGGCAATTT+GGG | - | chr1_2:2230654-2230673 | None:intergenic | 40.0% | |
| GTGTTGTCAAATATCTGCCA+TGG | + | chr1_2:2230956-2230975 | Msa0049060:intron | 40.0% | |
| GGTTGTCAAAATATCTGCCA+TGG | - | chr1_2:2230976-2230995 | None:intergenic | 40.0% | |
| !! | ATTTTGACAACCTCTGTGAC+CGG | + | chr1_2:2230984-2231003 | Msa0049060:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr1_2:2231152-2231171 | Msa0049060:intron | 40.0% |
| ATACCATGTCACGAATATCG+AGG | - | chr1_2:2231178-2231197 | None:intergenic | 40.0% | |
| GAATCCTATCTATCCGATGT+GGG | - | chr1_2:2231312-2231331 | None:intergenic | 40.0% | |
| AGAATCCTATCTATCCGATG+TGG | - | chr1_2:2231313-2231332 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr1_2:2231152-2231171 | Msa0049060:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr1_2:2231152-2231171 | Msa0049060:intron | 40.0% |
| ATATAGGGAAAAATGCAGGC+AGG | - | chr1_2:2231839-2231858 | None:intergenic | 40.0% | |
| ACTTATTCACACTGGGATGA+TGG | + | chr1_2:2232046-2232065 | Msa0049060:CDS | 40.0% | |
| !! | ACTTCTCCCTATTTGTTGTG+TGG | - | chr1_2:2232199-2232218 | None:intergenic | 40.0% |
| ACATGTGTAGGCATAAGAAG+TGG | + | chr1_2:2232293-2232312 | Msa0049060:intron | 40.0% | |
| ! | CTCATTTAAAGTGTGAGTCC+AGG | + | chr1_2:2232371-2232390 | Msa0049060:intron | 40.0% |
| ! | ATTTAAAGTGTGAGTCCAGG+AGG | + | chr1_2:2232374-2232393 | Msa0049060:intron | 40.0% |
| ! | TGTCAGTATTAATGGTGGTG+GGG | - | chr1_2:2232406-2232425 | None:intergenic | 40.0% |
| GATCTAAGTCTAATTCCACC+CGG | - | chr1_2:2232603-2232622 | None:intergenic | 40.0% | |
| GAAAGATCCAGACTTGAGAA+TGG | + | chr1_2:2232922-2232941 | Msa0049060:CDS | 40.0% | |
| !! | GCATGAAGGTATGGAGTTTT+AGG | - | chr1_2:2233012-2233031 | None:intergenic | 40.0% |
| TATTGCTATGTCCCCGTATC+AGG | + | chr1_2:2229721-2229740 | Msa0049060:intron | 45.0% | |
| GATGTTGATCACCTGATACG+GGG | - | chr1_2:2229735-2229754 | None:intergenic | 45.0% | |
| ATTGTTCAAGAGGGAAGCTG+AGG | + | chr1_2:2229971-2229990 | Msa0049060:CDS | 45.0% | |
| AGAACCTAGGTAGTCAATCC+CGG | + | chr1_2:2230226-2230245 | Msa0049060:intron | 45.0% | |
| TTATCCGGGATTGACTACCT+AGG | - | chr1_2:2230233-2230252 | None:intergenic | 45.0% | |
| AGGTAGTCAATCCCGGATAA+AGG | + | chr1_2:2230233-2230252 | Msa0049060:intron | 45.0% | |
| !! | ATCCTGCTATCCCCACTTTT+GGG | - | chr1_2:2230274-2230293 | None:intergenic | 45.0% |
| TGAAAACGGCGAATACAGAG+AGG | + | chr1_2:2230584-2230603 | Msa0049060:intron | 45.0% | |
| GAAAACGGCGAATACAGAGA+GGG | + | chr1_2:2230585-2230604 | Msa0049060:intron | 45.0% | |
| TACAGAGAGGGAATGGAAAG+GGG | + | chr1_2:2230597-2230616 | Msa0049060:intron | 45.0% | |
| ATGGAAAGGGGAAGAGAGAA+AGG | + | chr1_2:2230609-2230628 | Msa0049060:intron | 45.0% | |
| TGGAAAGGGGAAGAGAGAAA+GGG | + | chr1_2:2230610-2230629 | Msa0049060:intron | 45.0% | |
| GAACCGTTTGAAGGGCAATT+TGG | - | chr1_2:2230655-2230674 | None:intergenic | 45.0% | |
| ! | AATCGTGATTTTCCGAGAGC+CGG | + | chr1_2:2230689-2230708 | Msa0049060:intron | 45.0% |
| ATCTCAGTGAAAAACCGCAC+GGG | - | chr1_2:2230781-2230800 | None:intergenic | 45.0% | |
| CATCTCAGTGAAAAACCGCA+CGG | - | chr1_2:2230782-2230801 | None:intergenic | 45.0% | |
| GTTCTCTAGGTAGCCAATAC+CGG | - | chr1_2:2230826-2230845 | None:intergenic | 45.0% | |
| TGGCTACCTAGAGAACTATG+AGG | + | chr1_2:2230830-2230849 | Msa0049060:intron | 45.0% | |
| GGCTACCTAGAGAACTATGA+GGG | + | chr1_2:2230831-2230850 | Msa0049060:intron | 45.0% | |
| TTCTCCACACGTGTTACACT+TGG | + | chr1_2:2230934-2230953 | Msa0049060:intron | 45.0% | |
| AACACCAAGTGTAACACGTG+TGG | - | chr1_2:2230941-2230960 | None:intergenic | 45.0% | |
| !! | TGTGACCGGTTTTCTAAGGA+TGG | + | chr1_2:2230998-2231017 | Msa0049060:intron | 45.0% |
| CTCTGCCATCCTTAGAAAAC+CGG | - | chr1_2:2231006-2231025 | None:intergenic | 45.0% | |
| CATATCGGTCATATAACGCC+TGG | - | chr1_2:2231029-2231048 | None:intergenic | 45.0% | |
| CAGGCGTTATATGACCGATA+TGG | + | chr1_2:2231027-2231046 | Msa0049060:intron | 45.0% | |
| ACCGATATGGCAGCTTGAAA+TGG | + | chr1_2:2231040-2231059 | Msa0049060:intron | 45.0% | |
| GCCATTTCAAGCTGCCATAT+CGG | - | chr1_2:2231044-2231063 | None:intergenic | 45.0% | |
| GATATGGCAGCTTGAAATGG+CGG | + | chr1_2:2231043-2231062 | Msa0049060:intron | 45.0% | |
| !!! | GGTTTTTTTGCTTTCCGCCA+TGG | + | chr1_2:2231064-2231083 | Msa0049060:intron | 45.0% |
| CTATCTATAGAAGGGGACCA+TGG | - | chr1_2:2231084-2231103 | None:intergenic | 45.0% | |
| CATGGTCCCCTTCTATAGAT+AGG | + | chr1_2:2231082-2231101 | Msa0049060:intron | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | chr1_2:2231145-2231164 | None:intergenic | 45.0% |
| GACATGGTATCAGAGCCTAT+CGG | + | chr1_2:2231188-2231207 | Msa0049060:intron | 45.0% | |
| ACATGGTATCAGAGCCTATC+GGG | + | chr1_2:2231189-2231208 | Msa0049060:intron | 45.0% | |
| GACTAAATCCCACTGAGTGT+TGG | - | chr1_2:2231290-2231309 | None:intergenic | 45.0% | |
| AGTGGGATTTAGTCCCACAT+CGG | + | chr1_2:2231296-2231315 | Msa0049060:intron | 45.0% | |
| TAGTCCCACATCGGATAGAT+AGG | + | chr1_2:2231305-2231324 | Msa0049060:intron | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | chr1_2:2231145-2231164 | None:intergenic | 45.0% |
| TGCAAGTGTCACGAATATCG+AGG | - | chr1_2:2231401-2231420 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | chr1_2:2231145-2231164 | None:intergenic | 45.0% |
| TGCAAGTGTCACGAATATCG+AGG | - | chr1_2:2231401-2231420 | None:intergenic | 45.0% | |
| TGAAAACCCGAAGTTGCTGA+TGG | + | chr1_2:2231980-2231999 | Msa0049060:CDS | 45.0% | |
| ! | TATTCACACTGGGATGATGG+AGG | + | chr1_2:2232049-2232068 | Msa0049060:CDS | 45.0% |
| !! | CTCCCTATTTGTTGTGTGGT+TGG | - | chr1_2:2232195-2232214 | None:intergenic | 45.0% |
| TGTTGTGGACGGGAAAAACA+AGG | + | chr1_2:2232648-2232667 | Msa0049060:intron | 45.0% | |
| TGGACGGGAAAAACAAGGTT+GGG | + | chr1_2:2232653-2232672 | Msa0049060:intron | 45.0% | |
| AGGGGAGACACCATTAAAAG+TGG | + | chr1_2:2232676-2232695 | Msa0049060:intron | 45.0% | |
| ATGAGATGGCCAATCTTGGT+TGG | - | chr1_2:2232715-2232734 | None:intergenic | 45.0% | |
| ! | ACCAAGATTGGCCATCTCAT+CGG | + | chr1_2:2232715-2232734 | Msa0049060:intron | 45.0% |
| CTACTCGAGAAGCTTATTGC+AGG | - | chr1_2:2233070-2233089 | None:intergenic | 45.0% | |
| !!! | GTTATTTATTTTTTATTTTT+TGG | + | chr1_2:2231788-2231807 | Msa0049060:intron | 5.0% |
| TGGATAGGTCTCAAGCATGC+AGG | - | chr1_2:2229601-2229620 | None:intergenic | 50.0% | |
| GTCGCTGCAACCAATCTATC+CGG | + | chr1_2:2230192-2230211 | Msa0049060:intron | 50.0% | |
| CTATCCAGAGCCGGATAGAT+TGG | - | chr1_2:2230205-2230224 | None:intergenic | 50.0% | |
| !! | CAATCTATCCGGCTCTGGAT+AGG | + | chr1_2:2230203-2230222 | Msa0049060:intron | 50.0% |
| TAGGTTCTCCTATCCAGAGC+CGG | - | chr1_2:2230214-2230233 | None:intergenic | 50.0% | |
| GTCAATCCCGGATAAAGGCT+TGG | + | chr1_2:2230238-2230257 | Msa0049060:intron | 50.0% | |
| !! | TCCTGCTATCCCCACTTTTG+GGG | - | chr1_2:2230273-2230292 | None:intergenic | 50.0% |
| ! | GATCCTGCTATCCCCACTTT+TGG | - | chr1_2:2230275-2230294 | None:intergenic | 50.0% |
| AGGGGAAGAGAGAAAGGGTT+AGG | + | chr1_2:2230615-2230634 | Msa0049060:intron | 50.0% | |
| GGGGAAGAGAGAAAGGGTTA+GGG | + | chr1_2:2230616-2230635 | Msa0049060:intron | 50.0% | |
| CCTTAGAAAACCGGTCACAG+AGG | - | chr1_2:2230997-2231016 | None:intergenic | 50.0% | |
| !! | CCTCTGTGACCGGTTTTCTA+AGG | + | chr1_2:2230994-2231013 | Msa0049060:intron | 50.0% |
| ! | TTTCTAAGGATGGCAGAGCC+AGG | + | chr1_2:2231008-2231027 | Msa0049060:intron | 50.0% |
| TCTATAGAAGGGGACCATGG+CGG | - | chr1_2:2231081-2231100 | None:intergenic | 50.0% | |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | chr1_2:2231142-2231161 | Msa0049060:intron | 50.0% |
| AGGCCTCGATATTCGTGACA+TGG | + | chr1_2:2231172-2231191 | Msa0049060:intron | 50.0% | |
| AGCCTATCGGGTTCATCGTT+GGG | + | chr1_2:2231201-2231220 | Msa0049060:intron | 50.0% | |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | chr1_2:2231142-2231161 | Msa0049060:intron | 50.0% |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | chr1_2:2231142-2231161 | Msa0049060:intron | 50.0% |
| CCTTGACAGACACTGCAGTA+CGG | - | chr1_2:2231949-2231968 | None:intergenic | 50.0% | |
| CGTACTGCAGTGTCTGTCAA+GGG | + | chr1_2:2231947-2231966 | Msa0049060:intron | 50.0% | |
| AAACCCGAAGTTGCTGATGG+CGG | + | chr1_2:2231983-2232002 | Msa0049060:CDS | 50.0% | |
| GTGGACGGGAAAAACAAGGT+TGG | + | chr1_2:2232652-2232671 | Msa0049060:intron | 50.0% | |
| ACGGGAAAAACAAGGTTGGG+AGG | + | chr1_2:2232656-2232675 | Msa0049060:intron | 50.0% | |
| CGGGAAAAACAAGGTTGGGA+GGG | + | chr1_2:2232657-2232676 | Msa0049060:intron | 50.0% | |
| GGGAAAAACAAGGTTGGGAG+GGG | + | chr1_2:2232658-2232677 | Msa0049060:intron | 50.0% | |
| ACCGATGAGATGGCCAATCT+TGG | - | chr1_2:2232719-2232738 | None:intergenic | 50.0% | |
| GTGTGAGCCATTCTCAAGTC+TGG | - | chr1_2:2232932-2232951 | None:intergenic | 50.0% | |
| CTCCATACCTTCATGCTGCA+TGG | + | chr1_2:2233016-2233035 | Msa0049060:three_prime_UTR | 50.0% | |
| TGCCATGCAGCATGAAGGTA+TGG | - | chr1_2:2233021-2233040 | None:intergenic | 50.0% | |
| CAAGATGCCATGCAGCATGA+AGG | - | chr1_2:2233026-2233045 | None:intergenic | 50.0% | |
| CTCTTGGAGTGAATGCCCCA+AGG | + | chr1_2:2229800-2229819 | Msa0049060:CDS | 55.0% | |
| GCAACCAATCTATCCGGCTC+TGG | + | chr1_2:2230198-2230217 | Msa0049060:intron | 55.0% | |
| !! | GGCTCTGGATAGGAGAACCT+AGG | + | chr1_2:2230213-2230232 | Msa0049060:intron | 55.0% |
| GTCGCTCCAAGCCTTTATCC+GGG | - | chr1_2:2230247-2230266 | None:intergenic | 55.0% | |
| GGTCGCTCCAAGCCTTTATC+CGG | - | chr1_2:2230248-2230267 | None:intergenic | 55.0% | |
| !!! | GCTATCCCCACTTTTGGGGT+CGG | - | chr1_2:2230269-2230288 | None:intergenic | 55.0% |
| ACCCCAAAAGTGGGGATAGC+AGG | + | chr1_2:2230269-2230288 | Msa0049060:intron | 55.0% | |
| AAGTGGGGATAGCAGGATCC+CGG | + | chr1_2:2230276-2230295 | Msa0049060:intron | 55.0% | |
| TCTCTCCTCTCCTCTGTTCC+CGG | - | chr1_2:2230298-2230317 | None:intergenic | 55.0% | |
| CGGCGAATACAGAGAGGGAA+TGG | + | chr1_2:2230590-2230609 | Msa0049060:intron | 55.0% | |
| ACACTCCTCACCGTACAAGC+CGG | + | chr1_2:2231132-2231151 | Msa0049060:intron | 55.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | chr1_2:2231140-2231159 | None:intergenic | 55.0% |
| GAGCCTATCGGGTTCATCGT+TGG | + | chr1_2:2231200-2231219 | Msa0049060:intron | 55.0% | |
| AGCCCAACGATGAACCCGAT+AGG | - | chr1_2:2231206-2231225 | None:intergenic | 55.0% | |
| TGTTAGCGGCCAACACTCAG+TGG | + | chr1_2:2231278-2231297 | Msa0049060:intron | 55.0% | |
| GTTAGCGGCCAACACTCAGT+GGG | + | chr1_2:2231279-2231298 | Msa0049060:intron | 55.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | chr1_2:2231140-2231159 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | chr1_2:2231140-2231159 | None:intergenic | 55.0% |
| CCGTACTGCAGTGTCTGTCA+AGG | + | chr1_2:2231946-2231965 | Msa0049060:intron | 55.0% | |
| ATGCCGCCATCAGCAACTTC+GGG | - | chr1_2:2231989-2232008 | None:intergenic | 55.0% | |
| GATGCCGCCATCAGCAACTT+CGG | - | chr1_2:2231990-2232009 | None:intergenic | 55.0% | |
| TGGCATCTTGCTGCTGCTGT+TGG | + | chr1_2:2233036-2233055 | Msa0049060:three_prime_UTR | 55.0% | |
| GAGCGACCGACCCCAAAAGT+GGG | + | chr1_2:2230260-2230279 | Msa0049060:intron | 60.0% | |
| AGCGACCGACCCCAAAAGTG+GGG | + | chr1_2:2230261-2230280 | Msa0049060:intron | 60.0% | |
| AGTGGGGATAGCAGGATCCC+GGG | + | chr1_2:2230277-2230296 | Msa0049060:intron | 60.0% | |
| TAGCAGGATCCCGGGAACAG+AGG | + | chr1_2:2230285-2230304 | Msa0049060:intron | 60.0% | |
| CTCTCCTCTCCTCTGTTCCC+GGG | - | chr1_2:2230297-2230316 | None:intergenic | 60.0% | |
| TGGAAGATCGGGTTCCCGGT+GGG | - | chr1_2:2230717-2230736 | None:intergenic | 60.0% | |
| CAGGTGGAAGATCGGGTTCC+CGG | - | chr1_2:2230721-2230740 | None:intergenic | 60.0% | |
| AGCGCTCCAGGTGGAAGATC+GGG | - | chr1_2:2230728-2230747 | None:intergenic | 60.0% | |
| CAGCGCTCCAGGTGGAAGAT+CGG | - | chr1_2:2230729-2230748 | None:intergenic | 60.0% | |
| ! | GAGCGCTGCGAACCAGAAGT+GGG | + | chr1_2:2230741-2230760 | Msa0049060:intron | 60.0% |
| GCTGCGAACCAGAAGTGGGA+CGG | + | chr1_2:2230745-2230764 | Msa0049060:intron | 60.0% | |
| CTGCGAACCAGAAGTGGGAC+GGG | + | chr1_2:2230746-2230765 | Msa0049060:intron | 60.0% | |
| TGCGAATCCCGTCCCACTTC+TGG | - | chr1_2:2230756-2230775 | None:intergenic | 60.0% | |
| ACGGGATTCGCATTCCCGTG+CGG | + | chr1_2:2230764-2230783 | Msa0049060:intron | 60.0% | |
| ACTGAGATGCACCGCTCCTC+CGG | + | chr1_2:2230793-2230812 | Msa0049060:intron | 60.0% | |
| AGCCAATACCGGCGAGATCC+CGG | - | chr1_2:2230815-2230834 | None:intergenic | 60.0% | |
| GCTTCCATCGTCCACGCTTC+AGG | + | chr1_2:2231223-2231242 | Msa0049060:intron | 60.0% | |
| GTCCACGCTTCAGGCCCATT+GGG | + | chr1_2:2231232-2231251 | Msa0049060:intron | 60.0% | |
| ACGCTTTAGCCCGGCCCAAT+GGG | - | chr1_2:2231249-2231268 | None:intergenic | 60.0% | |
| ! | AGCGTGAGGGGGTGTGTTAG+CGG | + | chr1_2:2231264-2231283 | Msa0049060:intron | 60.0% |
| GCACTCCTCACCGTACAAGC+CGG | + | chr1_2:2231355-2231374 | Msa0049060:intron | 60.0% | |
| GCACTCCTCACCGTACAAGC+CGG | + | chr1_2:2231355-2231374 | Msa0049060:intron | 60.0% | |
| ! | GTGGTGGGGACAAATCCTCC+TGG | - | chr1_2:2232392-2232411 | None:intergenic | 60.0% |
| GGCCATCTCATCGGTGAAGC+CGG | + | chr1_2:2232724-2232743 | Msa0049060:intron | 60.0% | |
| !! | CACCGGCTTCACCGATGAGA+TGG | - | chr1_2:2232729-2232748 | None:intergenic | 60.0% |
| CTTGCTGCTGCTGTTGGCGT+AGG | + | chr1_2:2233042-2233061 | Msa0049060:three_prime_UTR | 60.0% | |
| GGAGCGACCGACCCCAAAAG+TGG | + | chr1_2:2230259-2230278 | Msa0049060:intron | 65.0% | |
| GGATCCCGGGAACAGAGGAG+AGG | + | chr1_2:2230290-2230309 | Msa0049060:intron | 65.0% | |
| GGAAGATCGGGTTCCCGGTG+GGG | - | chr1_2:2230716-2230735 | None:intergenic | 65.0% | |
| GTGGAAGATCGGGTTCCCGG+TGG | - | chr1_2:2230718-2230737 | None:intergenic | 65.0% | |
| CGGGAACCCGATCTTCCACC+TGG | + | chr1_2:2230719-2230738 | Msa0049060:intron | 65.0% | |
| !! | CTTCTGGTTCGCAGCGCTCC+AGG | - | chr1_2:2230740-2230759 | None:intergenic | 65.0% |
| !! | GGAGCGCTGCGAACCAGAAG+TGG | + | chr1_2:2230740-2230759 | Msa0049060:intron | 65.0% |
| CTGAGATGCACCGCTCCTCC+GGG | + | chr1_2:2230794-2230813 | Msa0049060:intron | 65.0% | |
| CAATACCGGCGAGATCCCGG+AGG | - | chr1_2:2230812-2230831 | None:intergenic | 65.0% | |
| CTCCGGGATCTCGCCGGTAT+TGG | + | chr1_2:2230810-2230829 | Msa0049060:intron | 65.0% | |
| TGGGCCTGAAGCGTGGACGA+TGG | - | chr1_2:2231230-2231249 | None:intergenic | 65.0% | |
| CGTCCACGCTTCAGGCCCAT+TGG | + | chr1_2:2231231-2231250 | Msa0049060:intron | 65.0% | |
| ACGCTTCAGGCCCATTGGGC+CGG | + | chr1_2:2231236-2231255 | Msa0049060:intron | 65.0% | |
| CACGCTTTAGCCCGGCCCAA+TGG | - | chr1_2:2231250-2231269 | None:intergenic | 65.0% | |
| TTGGGCCGGGCTAAAGCGTG+AGG | + | chr1_2:2231250-2231269 | Msa0049060:intron | 65.0% | |
| TGGGCCGGGCTAAAGCGTGA+GGG | + | chr1_2:2231251-2231270 | Msa0049060:intron | 65.0% | |
| CACCCCCTCACGCTTTAGCC+CGG | - | chr1_2:2231258-2231277 | None:intergenic | 65.0% | |
| TTCCGAGAGCCGGACCCCAC+CGG | + | chr1_2:2230699-2230718 | Msa0049060:intron | 70.0% | |
| ATCGGGTTCCCGGTGGGGTC+CGG | - | chr1_2:2230711-2230730 | None:intergenic | 70.0% | |
| ! | CTGGTTCGCAGCGCTCCAGG+TGG | - | chr1_2:2230737-2230756 | None:intergenic | 70.0% |
| GGCCCAATGGGCCTGAAGCG+TGG | - | chr1_2:2231237-2231256 | None:intergenic | 70.0% | |
| CGCTTCAGGCCCATTGGGCC+GGG | + | chr1_2:2231237-2231256 | Msa0049060:intron | 70.0% | |
| GGGCCGGGCTAAAGCGTGAG+GGG | + | chr1_2:2231252-2231271 | Msa0049060:intron | 70.0% | |
| GGCCGGGCTAAAGCGTGAGG+GGG | + | chr1_2:2231253-2231272 | Msa0049060:intron | 70.0% | |
| TCCGAGAGCCGGACCCCACC+GGG | + | chr1_2:2230700-2230719 | Msa0049060:intron | 75.0% | |
| TCCCGGTGGGGTCCGGCTCT+CGG | - | chr1_2:2230704-2230723 | None:intergenic | 75.0% | |
| CCGGCGAGATCCCGGAGGAG+CGG | - | chr1_2:2230807-2230826 | None:intergenic | 75.0% | |
| CCGCTCCTCCGGGATCTCGC+CGG | + | chr1_2:2230804-2230823 | Msa0049060:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 2229580 | 2233405 | 2229580 | ID=Msa0049060;Name=Msa0049060 |
| chr1_2 | mRNA | 2229580 | 2233405 | 2229580 | ID=Msa0049060-mRNA-1;Parent=Msa0049060;Name=Msa0049060-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|1|1|1|1|5|411|162 |
| chr1_2 | exon | 2229580 | 2229640 | 2229580 | ID=Msa0049060-mRNA-1:exon:454;Parent=Msa0049060-mRNA-1 |
| chr1_2 | exon | 2229743 | 2229821 | 2229743 | ID=Msa0049060-mRNA-1:exon:455;Parent=Msa0049060-mRNA-1 |
| chr1_2 | exon | 2229903 | 2230041 | 2229903 | ID=Msa0049060-mRNA-1:exon:456;Parent=Msa0049060-mRNA-1 |
| chr1_2 | exon | 2231957 | 2232070 | 2231957 | ID=Msa0049060-mRNA-1:exon:457;Parent=Msa0049060-mRNA-1 |
| chr1_2 | exon | 2232899 | 2233405 | 2232899 | ID=Msa0049060-mRNA-1:exon:458;Parent=Msa0049060-mRNA-1 |
| chr1_2 | CDS | 2229580 | 2229640 | 2229580 | ID=Msa0049060-mRNA-1:cds;Parent=Msa0049060-mRNA-1 |
| chr1_2 | CDS | 2229743 | 2229821 | 2229743 | ID=Msa0049060-mRNA-1:cds;Parent=Msa0049060-mRNA-1 |
| chr1_2 | CDS | 2229903 | 2230041 | 2229903 | ID=Msa0049060-mRNA-1:cds;Parent=Msa0049060-mRNA-1 |
| chr1_2 | CDS | 2231957 | 2232070 | 2231957 | ID=Msa0049060-mRNA-1:cds;Parent=Msa0049060-mRNA-1 |
| chr1_2 | CDS | 2232899 | 2232994 | 2232899 | ID=Msa0049060-mRNA-1:cds;Parent=Msa0049060-mRNA-1 |
| chr1_2 | three_prime_UTR | 2232995 | 2233405 | 2232995 | ID=Msa0049060-mRNA-1:three_prime_utr;Parent=Msa0049060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
