Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424390 | sp|Q9SZD1|TCX5_ARATH | 65.714 | 420 | 131 | 7 | 61 | 475 | 109 | 520 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424390 | G7L886 | 97.699 | 478 | 11 | 0 | 1 | 478 | 1 | 478 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1424390 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1424380 | Msa1424390 | 0.847627 | 1.025935e-59 | -8.615850e-47 |
| Msa0370160 | Msa1424390 | 0.804421 | 2.177389e-49 | -8.615850e-47 |
| Msa0509950 | Msa1424390 | 0.801948 | 7.076511e-49 | -8.615850e-47 |
| Msa0576530 | Msa1424390 | 0.939392 | 1.372227e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424390 | MtrunA17_Chr8g0390351 | 97.689 | 476 | 11 | 0 | 1 | 476 | 1 | 476 | 0.0 | 966 |
| Msa1424390 | MtrunA17_Chr6g0485811 | 67.429 | 525 | 119 | 9 | 1 | 476 | 1 | 522 | 0.0 | 674 |
| Msa1424390 | MtrunA17_Chr3g0139951 | 48.845 | 303 | 146 | 4 | 36 | 334 | 101 | 398 | 6.04e-85 | 267 |
| Msa1424390 | MtrunA17_Chr1g0149101 | 45.000 | 140 | 73 | 3 | 83 | 218 | 498 | 637 | 9.27e-30 | 123 |
| Msa1424390 | MtrunA17_Chr5g0394661 | 44.615 | 130 | 71 | 1 | 83 | 211 | 488 | 617 | 1.30e-29 | 122 |
| Msa1424390 | MtrunA17_Chr1g0205031 | 32.812 | 128 | 85 | 1 | 85 | 211 | 407 | 534 | 2.18e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424390 | AT4G29000.1 | 65.714 | 420 | 131 | 7 | 61 | 475 | 109 | 520 | 0.0 | 536 |
| Msa1424390 | AT2G20110.3 | 53.216 | 513 | 163 | 13 | 1 | 475 | 1 | 474 | 2.23e-171 | 493 |
| Msa1424390 | AT2G20110.1 | 53.216 | 513 | 163 | 13 | 1 | 475 | 1 | 474 | 2.72e-171 | 494 |
| Msa1424390 | AT2G20110.2 | 53.216 | 513 | 163 | 13 | 1 | 475 | 1 | 474 | 4.44e-171 | 494 |
| Msa1424390 | AT5G25790.1 | 42.793 | 444 | 199 | 11 | 47 | 478 | 50 | 450 | 3.53e-106 | 324 |
| Msa1424390 | AT5G25790.2 | 42.664 | 443 | 199 | 11 | 47 | 477 | 50 | 449 | 1.91e-105 | 323 |
| Msa1424390 | AT5G25790.3 | 42.411 | 448 | 191 | 13 | 47 | 478 | 50 | 446 | 1.31e-103 | 317 |
| Msa1424390 | AT3G16160.1 | 31.291 | 457 | 193 | 14 | 24 | 470 | 17 | 362 | 2.08e-42 | 154 |
| Msa1424390 | AT3G22760.2 | 44.172 | 163 | 82 | 5 | 61 | 219 | 184 | 341 | 1.68e-34 | 135 |
| Msa1424390 | AT3G22760.1 | 44.172 | 163 | 82 | 5 | 61 | 219 | 307 | 464 | 3.05e-34 | 136 |
| Msa1424390 | AT4G14770.1 | 44.776 | 134 | 67 | 3 | 83 | 212 | 375 | 505 | 2.05e-32 | 131 |
| Msa1424390 | AT4G14770.2 | 44.776 | 134 | 67 | 3 | 83 | 212 | 355 | 485 | 2.50e-32 | 130 |
| Msa1424390 | AT4G14770.3 | 44.776 | 134 | 67 | 3 | 83 | 212 | 356 | 486 | 2.61e-32 | 130 |
| Msa1424390 | AT3G22780.1 | 43.704 | 135 | 69 | 3 | 83 | 213 | 401 | 532 | 1.73e-31 | 128 |
| Msa1424390 | AT3G04850.1 | 45.736 | 129 | 69 | 1 | 83 | 210 | 453 | 581 | 4.93e-31 | 127 |
Find 115 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTGATTTAGGAGATTC+TGG | 0.202009 | tig0025690:+21087 | None:intergenic |
| TAACAATAATCACAACAATT+AGG | 0.206360 | tig0025690:+21748 | None:intergenic |
| TTGGGTCTTGACTTTGATTT+AGG | 0.219084 | tig0025690:+21078 | None:intergenic |
| TCTTAATAGGGTTATCACTA+TGG | 0.229357 | tig0025690:-16764 | Msa1424390:CDS |
| GGAGACATTGGCCTCCCTTT+TGG | 0.278244 | tig0025690:+16961 | None:intergenic |
| TCTCCCCATCAGCTTCCTTT+TGG | 0.283654 | tig0025690:+17067 | None:intergenic |
| GGAAGTGTCGGCGGTGGTTG+TGG | 0.289843 | tig0025690:+21530 | None:intergenic |
| CAGCTCGATTTCAACGCTTT+TGG | 0.295923 | tig0025690:-21587 | Msa1424390:CDS |
| GATCATGCGGTTGTGGATTA+AGG | 0.296996 | tig0025690:+21973 | None:intergenic |
| ACATCTTCACAATTGCCTTA+TGG | 0.308433 | tig0025690:-16850 | Msa1424390:CDS |
| GCAGCCAATGCTGCTATAAC+TGG | 0.312657 | tig0025690:-19430 | Msa1424390:CDS |
| ATCACTATGGGCGAAATAAA+TGG | 0.314147 | tig0025690:-16751 | Msa1424390:CDS |
| GAAGTGTCGGCGGTGGTTGT+GGG | 0.336832 | tig0025690:+21531 | None:intergenic |
| CGGAACTCTGGCCGTCCATC+AGG | 0.341120 | tig0025690:-19351 | Msa1424390:CDS |
| AACAATAATCACAACAATTA+GGG | 0.349273 | tig0025690:+21749 | None:intergenic |
| GGCGGTGGTTGTGGGTGTTC+CGG | 0.362076 | tig0025690:+21539 | None:intergenic |
| CGTGTTGGACCTTCAACATT+AGG | 0.374824 | tig0025690:-18326 | Msa1424390:CDS |
| GCTGCTATAACTGGAGCTAT+TGG | 0.378616 | tig0025690:-19421 | Msa1424390:CDS |
| TCCGGCAGAGGTGCAGTTAC+CGG | 0.392618 | tig0025690:+21557 | None:intergenic |
| AAACAGAGCAAAGCTCCTTC+AGG | 0.392877 | tig0025690:+18162 | None:intergenic |
| TCTTTCGTTCCTTGTCCATA+AGG | 0.397871 | tig0025690:+16835 | None:intergenic |
| TGGAGATCAAAACAACAATA+TGG | 0.398327 | tig0025690:-19467 | Msa1424390:CDS |
| CACATCAATGCTAAAGTTCC+AGG | 0.399973 | tig0025690:+16940 | None:intergenic |
| CTGCCTAGCAAGCTTCTTAA+CGG | 0.406846 | tig0025690:+21607 | None:intergenic |
| GAAGGTCCAACACGAGGTAC+TGG | 0.411988 | tig0025690:+18335 | None:intergenic |
| AACGCAATCCAAATGCCTTT+AGG | 0.412558 | tig0025690:-20770 | Msa1424390:CDS |
| ACTGGAGCTATTGGTTCCTC+TGG | 0.415396 | tig0025690:-19412 | Msa1424390:CDS |
| TCCATCAGGGATCCATCGTT+TGG | 0.418364 | tig0025690:-19337 | Msa1424390:CDS |
| CCTCTTCCTGCACCCAAAGT+GGG | 0.422177 | tig0025690:-21506 | Msa1424390:CDS |
| AAAGAAAAGGTTCGGAACTC+TGG | 0.425606 | tig0025690:-19363 | Msa1424390:CDS |
| TTTGAAGGGCCTAATGTTGA+AGG | 0.430598 | tig0025690:+18317 | None:intergenic |
| GCCCTTCAAAATTTATGTAC+AGG | 0.435578 | tig0025690:-18304 | Msa1424390:intron |
| CTTAATAGGGTTATCACTAT+GGG | 0.444084 | tig0025690:-16763 | Msa1424390:CDS |
| CAGAACAAAGAATGTTGGCT+TGG | 0.445420 | tig0025690:+19554 | None:intergenic |
| CCTAAGACTGACCCCACTTT+GGG | 0.446599 | tig0025690:+21494 | None:intergenic |
| GCCTAAGACTGACCCCACTT+TGG | 0.446742 | tig0025690:+21493 | None:intergenic |
| AACATCAGCACCATCTGAAC+TGG | 0.452271 | tig0025690:+16984 | None:intergenic |
| TTCAAAAGCTCGTGAGAGAG+AGG | 0.456935 | tig0025690:-21903 | Msa1424390:five_prime_UTR |
| TGGATTAAGGTTCTCATCGT+AGG | 0.457054 | tig0025690:+21986 | None:intergenic |
| AAAGGGAGGCCAATGTCTCC+TGG | 0.459213 | tig0025690:-16958 | Msa1424390:CDS |
| GAGCGACAGGCTTTGTTCCA+TGG | 0.463378 | tig0025690:-19487 | Msa1424390:CDS |
| GCCGGTAACTGCACCTCTGC+CGG | 0.463775 | tig0025690:-21558 | Msa1424390:CDS |
| CCCACTTTGGGTGCAGGAAG+AGG | 0.467373 | tig0025690:+21506 | None:intergenic |
| TGGTAATTGCTCTTGATTTG+AGG | 0.468628 | tig0025690:+17092 | None:intergenic |
| TGAGCCATCGACGCAGTTGA+GGG | 0.478336 | tig0025690:+16883 | None:intergenic |
| AGCTCCAGTTATAGCAGCAT+TGG | 0.488511 | tig0025690:+19426 | None:intergenic |
| GATGGTGCTGATGTTCCAAA+AGG | 0.490293 | tig0025690:-16976 | Msa1424390:CDS |
| GTTTGGAAAGCTAGGACAAC+AGG | 0.490764 | tig0025690:-19320 | Msa1424390:intron |
| AAAGATGAAGAGGGTGCTGC+AGG | 0.491726 | tig0025690:+18368 | None:intergenic |
| GGTTGTGGGTGTTCCGGCAG+AGG | 0.497560 | tig0025690:+21545 | None:intergenic |
| TCCTCTTCCTGCACCCAAAG+TGG | 0.499712 | tig0025690:-21507 | Msa1424390:CDS |
| CGATCGAATGGGTGAAGGTG+AGG | 0.502201 | tig0025690:-21666 | Msa1424390:exon |
| TTCTGAAAACTGTAAATGCA+TGG | 0.504558 | tig0025690:-19536 | Msa1424390:CDS |
| ACTGACCCCACTTTGGGTGC+AGG | 0.507298 | tig0025690:+21500 | None:intergenic |
| ATATAAATGTAGGAGGAGAC+TGG | 0.511871 | tig0025690:-19658 | Msa1424390:intron |
| TGAAGGAAGTGAAGAGCGAC+AGG | 0.515256 | tig0025690:-19500 | Msa1424390:CDS |
| GACTGGGGAAGTTAAAGTAT+TGG | 0.517867 | tig0025690:-19641 | Msa1424390:CDS |
| ATGAGCCATCGACGCAGTTG+AGG | 0.519656 | tig0025690:+16882 | None:intergenic |
| TCAGTTTGATCATGCGGTTG+TGG | 0.520381 | tig0025690:+21966 | None:intergenic |
| GATCGAATGGGTGAAGGTGA+GGG | 0.528000 | tig0025690:-21665 | Msa1424390:exon |
| AGAGCAATTACCAAACCAAA+AGG | 0.531316 | tig0025690:-17082 | Msa1424390:CDS |
| GCGTTCTAAAGTTGCCTCAA+CGG | 0.532916 | tig0025690:+20788 | None:intergenic |
| GGTGCTGCAGGACCTCTGAC+AGG | 0.533479 | tig0025690:+18380 | None:intergenic |
| GCAGGAAGAGGAGGAAGTGT+CGG | 0.537059 | tig0025690:+21518 | None:intergenic |
| CTCTTCCTGCACCCAAAGTG+GGG | 0.540427 | tig0025690:-21505 | Msa1424390:intron |
| GGAACTCTGGCCGTCCATCA+GGG | 0.541188 | tig0025690:-19350 | Msa1424390:CDS |
| AGATCTATGCAGAGCAAGAG+AGG | 0.541580 | tig0025690:-16813 | Msa1424390:CDS |
| CAATATGGCGTATCTTCAGC+AGG | 0.547825 | tig0025690:-19452 | Msa1424390:CDS |
| GGATTAAGGTTCTCATCGTA+GGG | 0.550297 | tig0025690:+21987 | None:intergenic |
| GCTAAAGTTCCAGGAGACAT+TGG | 0.554665 | tig0025690:+16949 | None:intergenic |
| CCTGTCCCAGTACCTCGTGT+TGG | 0.556568 | tig0025690:-18341 | Msa1424390:CDS |
| AAAATTGCGAGCAGTCCTCA+TGG | 0.561710 | tig0025690:-20744 | Msa1424390:CDS |
| TGGGGCGATCGAATGGGTGA+AGG | 0.561905 | tig0025690:-21671 | Msa1424390:exon |
| TAACAATGTTGACAATGAAG+CGG | 0.562048 | tig0025690:-20823 | Msa1424390:CDS |
| CCTGAAAATTCCAGTTCAGA+TGG | 0.562427 | tig0025690:-16994 | Msa1424390:CDS |
| TATAAATGTAGGAGGAGACT+GGG | 0.563902 | tig0025690:-19657 | Msa1424390:intron |
| GATCCATCGTTTGGAAAGCT+AGG | 0.564234 | tig0025690:-19328 | Msa1424390:CDS |
| CCAACACGAGGTACTGGGAC+AGG | 0.566645 | tig0025690:+18341 | None:intergenic |
| CAAACCAAAAGGAAGCTGAT+GGG | 0.567376 | tig0025690:-17071 | Msa1424390:CDS |
| ATTCCGTTAAGAAGCTTGCT+AGG | 0.570445 | tig0025690:-21610 | Msa1424390:CDS |
| CCAAACCAAAAGGAAGCTGA+TGG | 0.575383 | tig0025690:-17072 | Msa1424390:CDS |
| CAAAGCTCCTTCAGGTGCTG+TGG | 0.576488 | tig0025690:+18170 | None:intergenic |
| AGAGGAGGAAGTGTCGGCGG+TGG | 0.576611 | tig0025690:+21524 | None:intergenic |
| TCACAATTGCCTTATGGACA+AGG | 0.579807 | tig0025690:-16844 | Msa1424390:CDS |
| TTTAGTGCTAGTATCTGGAC+AGG | 0.580606 | tig0025690:-18141 | Msa1424390:CDS |
| TCCAAACGATGGATCCCTGA+TGG | 0.585261 | tig0025690:+19336 | None:intergenic |
| TAGATAAGCACACAGAAGAT+CGG | 0.590669 | tig0025690:-17134 | Msa1424390:CDS |
| AGCCATCGACGCAGTTGAGG+GGG | 0.590783 | tig0025690:+16885 | None:intergenic |
| GACAGGAGACAAAGATGAAG+AGG | 0.594341 | tig0025690:+18358 | None:intergenic |
| AAGGTCCAACACGAGGTACT+GGG | 0.595130 | tig0025690:+18336 | None:intergenic |
| AACGATGGATCCCTGATGGA+CGG | 0.596545 | tig0025690:+19340 | None:intergenic |
| ATGGTGCTGATGTTCCAAAA+GGG | 0.600938 | tig0025690:-16975 | Msa1424390:CDS |
| GAGCCATCGACGCAGTTGAG+GGG | 0.602668 | tig0025690:+16884 | None:intergenic |
| TGTCCTAGCTTTCCAAACGA+TGG | 0.604497 | tig0025690:+19325 | None:intergenic |
| AAACCAAAAGGAAGCTGATG+GGG | 0.605517 | tig0025690:-17070 | Msa1424390:CDS |
| AGTATTGGTAAAGCACAACA+AGG | 0.610516 | tig0025690:-19626 | Msa1424390:CDS |
| AACATTCACAGTACTTCTTG+AGG | 0.610779 | tig0025690:+19578 | None:intergenic |
| TCATGGAACACGTGATAACA+AGG | 0.615546 | tig0025690:-20727 | Msa1424390:intron |
| TCAAAAGCTCGTGAGAGAGA+GGG | 0.617804 | tig0025690:-21902 | Msa1424390:five_prime_UTR |
| GTATTGGTAAAGCACAACAA+GGG | 0.619872 | tig0025690:-19625 | Msa1424390:CDS |
| ACTTTGGGTGCAGGAAGAGG+AGG | 0.619897 | tig0025690:+21509 | None:intergenic |
| AAAGCTCGTGAGAGAGAGGG+AGG | 0.625447 | tig0025690:-21899 | Msa1424390:five_prime_UTR |
| GCGTCGGGGATATATTGCGA+TGG | 0.627790 | tig0025690:-20867 | Msa1424390:CDS |
| GGCAAGACGAGAAGCCGTTG+AGG | 0.638829 | tig0025690:-20802 | Msa1424390:CDS |
| CATACAACCACAGCACCTGA+AGG | 0.646661 | tig0025690:-18177 | Msa1424390:CDS |
| ACAGGAGACAAAGATGAAGA+GGG | 0.650680 | tig0025690:+18359 | None:intergenic |
| GGAAGAGGAGGAAGTGTCGG+CGG | 0.650685 | tig0025690:+21521 | None:intergenic |
| TATCAGGCAAATCCTGTCAG+AGG | 0.651141 | tig0025690:-18392 | Msa1424390:intron |
| TATTGGTAAAGCACAACAAG+GGG | 0.652902 | tig0025690:-19624 | Msa1424390:CDS |
| GTGCTGATGTTCCAAAAGGG+AGG | 0.653307 | tig0025690:-16972 | Msa1424390:CDS |
| AGCTGATGGGGAGAAAGTTG+TGG | 0.668913 | tig0025690:-17058 | Msa1424390:CDS |
| TTGTTATCACGTGTTCCATG+AGG | 0.679705 | tig0025690:+20729 | None:intergenic |
| AATGTTGAAGGTCCAACACG+AGG | 0.707406 | tig0025690:+18329 | None:intergenic |
| TGGTGGTGATGAATAACCAG+AGG | 0.718034 | tig0025690:+19396 | None:intergenic |
| ATAAATGTAGGAGGAGACTG+GGG | 0.722595 | tig0025690:-19656 | Msa1424390:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTGTAAATTTTCTA+CGG | + | tig0025690:16814-16833 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | - | tig0025690:18365-18384 | Msa1424390:CDS | 10.0% |
| !! | AACAAAAAATTAATATATGT+GGG | + | tig0025690:18673-18692 | None:intergenic | 10.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | - | tig0025690:18425-18444 | Msa1424390:intron | 15.0% |
| !! | ACAAAAAATTAATATATGTG+GGG | + | tig0025690:18672-18691 | None:intergenic | 15.0% |
| !! | GAACAAAAAATTAATATATG+TGG | + | tig0025690:18674-18693 | None:intergenic | 15.0% |
| !! | AAAAGGAAAAAATGTAAATA+AGG | + | tig0025690:18746-18765 | None:intergenic | 15.0% |
| !!! | ATTACTTCATTTTAAATTGT+GGG | + | tig0025690:18813-18832 | None:intergenic | 15.0% |
| !!! | AATTACTTCATTTTAAATTG+TGG | + | tig0025690:18814-18833 | None:intergenic | 15.0% |
| !! | AAGTAAAAAAAAATTAAAGC+CGG | - | tig0025690:18966-18985 | Msa1424390:intron | 15.0% |
| !!! | TTTTTATTCTTATGTTTCTA+TGG | - | tig0025690:19054-19073 | Msa1424390:intron | 15.0% |
| !!! | TATTTTTTTTTACTCCTAAT+GGG | + | tig0025690:19565-19584 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTTTACTCCTAA+TGG | + | tig0025690:19566-19585 | None:intergenic | 15.0% |
| !!! | TGTTTTATATGAAGAAAATA+TGG | + | tig0025690:20089-20108 | None:intergenic | 15.0% |
| !! | TCTTATTATAATTGAATGAA+TGG | - | tig0025690:20123-20142 | Msa1424390:intron | 15.0% |
| !!! | TCAAAATCAAAATATGTTTT+AGG | + | tig0025690:21287-21306 | None:intergenic | 15.0% |
| !! | AACAATAATCACAACAATTA+GGG | + | tig0025690:16995-17014 | None:intergenic | 20.0% |
| !! | TAACAATAATCACAACAATT+AGG | + | tig0025690:16996-17015 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGTGTTGAATTTT+TGG | - | tig0025690:17050-17069 | Msa1424390:CDS | 20.0% |
| !!! | TTTTTGTGTGTTGAATTTTT+GGG | - | tig0025690:17051-17070 | Msa1424390:CDS | 20.0% |
| !! | AAATTGAGATTCTTGTTAAT+AGG | - | tig0025690:17498-17517 | Msa1424390:intron | 20.0% |
| !! | AATTGAGATTCTTGTTAATA+GGG | - | tig0025690:17499-17518 | Msa1424390:intron | 20.0% |
| !! | TAATTAAGCACTTCAAAAAA+AGG | + | tig0025690:17613-17632 | None:intergenic | 20.0% |
| !! | AATTAGTGTTTATTTGATTC+AGG | - | tig0025690:17628-17647 | Msa1424390:intron | 20.0% |
| !!! | GATTTGCTTATATTTTGTTA+CGG | + | tig0025690:18170-18189 | None:intergenic | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | + | tig0025690:18362-18381 | None:intergenic | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | - | tig0025690:18398-18417 | Msa1424390:intron | 20.0% |
| !! | AAAAAAAATCCAAAACAAAC+AGG | - | tig0025690:18523-18542 | Msa1424390:intron | 20.0% |
| !! | AAAATGCATCAAACAAAATT+TGG | + | tig0025690:18570-18589 | None:intergenic | 20.0% |
| !! | AAAAAATTAATATATGTGGG+GGG | + | tig0025690:18670-18689 | None:intergenic | 20.0% |
| !! | CAAAAAATTAATATATGTGG+GGG | + | tig0025690:18671-18690 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTACTCCTAATG+GGG | + | tig0025690:19564-19583 | None:intergenic | 20.0% |
| !!! | TATTTTTTTTCATGCTTATC+AGG | - | tig0025690:20333-20352 | Msa1424390:intron | 20.0% |
| !!! | AAAATTTCTTGAGATTTGTT+TGG | + | tig0025690:20842-20861 | None:intergenic | 20.0% |
| !!! | AACATATTTTGATTTTGAAG+TGG | - | tig0025690:21289-21308 | Msa1424390:intron | 20.0% |
| !!! | TGTATTCTTTTGAAGTTTTT+GGG | - | tig0025690:21489-21508 | Msa1424390:intron | 20.0% |
| !! | ATTAAACATGAGTTTGATAT+TGG | + | tig0025690:21564-21583 | None:intergenic | 20.0% |
| !!! | GCTTATCTATTAAATTTTTC+TGG | + | tig0025690:21596-21615 | None:intergenic | 20.0% |
| !!! | AATTCAGAGATTTTCTTAAT+AGG | - | tig0025690:21964-21983 | Msa1424390:five_prime_UTR | 20.0% |
| !!! | ATTCAGAGATTTTCTTAATA+GGG | - | tig0025690:21965-21984 | Msa1424390:five_prime_UTR | 20.0% |
| !! | TTTTGTAAATTTTCTACGGT+TGG | + | tig0025690:16810-16829 | None:intergenic | 25.0% |
| !! | TTTTGTGTGTTGAATTTTTG+GGG | - | tig0025690:17052-17071 | Msa1424390:CDS | 25.0% |
| !!! | TATTGGTTCAAATTTGATGA+TGG | - | tig0025690:17540-17559 | Msa1424390:intron | 25.0% |
| !!! | GTTGTGAATTTTTTGTATTG+AGG | - | tig0025690:18079-18098 | Msa1424390:intron | 25.0% |
| !! | TGCTTATATTTTGTTACAGA+AGG | - | tig0025690:18590-18609 | Msa1424390:intron | 25.0% |
| !!! | TACTTTGTTTTAGTTCATTG+AGG | - | tig0025690:18624-18643 | Msa1424390:intron | 25.0% |
| !! | ATTGAGGATTTTTGTTGATA+AGG | - | tig0025690:18640-18659 | Msa1424390:intron | 25.0% |
| !!! | TTGAGGATTTTTGTTGATAA+GGG | - | tig0025690:18641-18660 | Msa1424390:intron | 25.0% |
| !! | TTTTTCCTTTTATTAGAAGC+AGG | - | tig0025690:18755-18774 | Msa1424390:intron | 25.0% |
| ! | TTTACAAGTATCTTAACAAC+AGG | + | tig0025690:18931-18950 | None:intergenic | 25.0% |
| ! | ATGGACTTCAATATAAATGT+AGG | - | tig0025690:19073-19092 | Msa1424390:intron | 25.0% |
| !!! | ATTTTGGAAATTAGGTAAAC+TGG | - | tig0025690:19480-19499 | Msa1424390:CDS | 25.0% |
| !!! | TTTTGGAAATTAGGTAAACT+GGG | - | tig0025690:19481-19500 | Msa1424390:CDS | 25.0% |
| ! | ATGCATCTCTCAATTTAATT+GGG | + | tig0025690:19590-19609 | None:intergenic | 25.0% |
| ! | AATGCATCTCTCAATTTAAT+TGG | + | tig0025690:19591-19610 | None:intergenic | 25.0% |
| ! | AATTAGAATAGCATTTCCTT+GGG | - | tig0025690:19913-19932 | Msa1424390:intron | 25.0% |
| !! | ACCTGTACATAAATTTTGAA+GGG | + | tig0025690:20441-20460 | None:intergenic | 25.0% |
| !! | TACCTGTACATAAATTTTGA+AGG | + | tig0025690:20442-20461 | None:intergenic | 25.0% |
| ! | TTCAAAATTTATGTACAGGT+AGG | - | tig0025690:20441-20460 | Msa1424390:intron | 25.0% |
| !! | CAAATAACACAATTGATGAT+GGG | + | tig0025690:20665-20684 | None:intergenic | 25.0% |
| ! | AATAATTCTGAACCTTACTT+TGG | + | tig0025690:21052-21071 | None:intergenic | 25.0% |
| ! | AAAAGGTTGTATTTACCATT+TGG | + | tig0025690:21192-21211 | None:intergenic | 25.0% |
| ! | TTGAAGTGGAATTAATTCTA+TGG | - | tig0025690:21303-21322 | Msa1424390:intron | 25.0% |
| !!! | GTGTATTCTTTTGAAGTTTT+TGG | - | tig0025690:21488-21507 | Msa1424390:intron | 25.0% |
| ! | CAATTGAATAGAATAATCGA+AGG | + | tig0025690:21521-21540 | None:intergenic | 25.0% |
| ! | CTTCGATTATTCTATTCAAT+TGG | - | tig0025690:21519-21538 | Msa1424390:CDS | 25.0% |
| AAAAGCGAAGTCTAAGTTAT+TGG | - | tig0025690:17523-17542 | Msa1424390:intron | 30.0% | |
| !!! | AATTTGATGATGGCCTTTTT+TGG | - | tig0025690:17550-17569 | Msa1424390:intron | 30.0% |
| AGAAGAAAAGTCTCCAAAAA+AGG | + | tig0025690:17566-17585 | None:intergenic | 30.0% | |
| ! | ATATTGTGAATGTTTTGCGT+CGG | - | tig0025690:17858-17877 | Msa1424390:intron | 30.0% |
| TAACAATGTTGACAATGAAG+CGG | - | tig0025690:17918-17937 | Msa1424390:intron | 30.0% | |
| ! | GCTTAACTTTTTGTAAAGGT+TGG | - | tig0025690:18044-18063 | Msa1424390:intron | 30.0% |
| ! | TTATATTTTGTTACGGAGGA+GGG | + | tig0025690:18163-18182 | None:intergenic | 30.0% |
| ! | TTGCTTATATTTTGTTACGG+AGG | + | tig0025690:18167-18186 | None:intergenic | 30.0% |
| AGCAAATCTGAGTCAAATAA+AGG | - | tig0025690:18182-18201 | Msa1424390:CDS | 30.0% | |
| GCAAATCTGAGTCAAATAAA+GGG | - | tig0025690:18183-18202 | Msa1424390:CDS | 30.0% | |
| GGTCCAAATAAATCAACTTT+GGG | + | tig0025690:18549-18568 | None:intergenic | 30.0% | |
| TGGTCCAAATAAATCAACTT+TGG | + | tig0025690:18550-18569 | None:intergenic | 30.0% | |
| AAACGAAAACTAAAATGCAC+TGG | + | tig0025690:18723-18742 | None:intergenic | 30.0% | |
| ATGTCATAATTCCATACCAT+TGG | + | tig0025690:18900-18919 | None:intergenic | 30.0% | |
| !! | TTTTGAGTAAGCAAAAAGGA+AGG | + | tig0025690:19018-19037 | None:intergenic | 30.0% |
| !! | GATGTTTTGAGTAAGCAAAA+AGG | + | tig0025690:19022-19041 | None:intergenic | 30.0% |
| GACTTCAATATAAATGTAGG+AGG | - | tig0025690:19076-19095 | Msa1424390:intron | 30.0% | |
| !! | GGTGTCATTGTAAAAAATCT+GGG | - | tig0025690:19138-19157 | Msa1424390:intron | 30.0% |
| ! | GTTTTCAGAACAAAGAATGT+TGG | + | tig0025690:19195-19214 | None:intergenic | 30.0% |
| ! | TTCTGAAAACTGTAAATGCA+TGG | - | tig0025690:19205-19224 | Msa1424390:intron | 30.0% |
| ! | ATGGATTGCAAAAACTTTGA+AGG | - | tig0025690:19224-19243 | Msa1424390:intron | 30.0% |
| !!! | TATTGTTGTTTTGATCTCCA+TGG | + | tig0025690:19274-19293 | None:intergenic | 30.0% |
| TGGAGATCAAAACAACAATA+TGG | - | tig0025690:19274-19293 | Msa1424390:intron | 30.0% | |
| ! | GTAAAACTTGATAATACTGC+AGG | - | tig0025690:19443-19462 | Msa1424390:CDS | 30.0% |
| !!! | AGGGGTTTATTTTGGAAATT+AGG | - | tig0025690:19472-19491 | Msa1424390:CDS | 30.0% |
| TTTGGAAATTAGGTAAACTG+GGG | - | tig0025690:19482-19501 | Msa1424390:CDS | 30.0% | |
| !! | TTGAGTTGAAATGAACACAT+TGG | + | tig0025690:19670-19689 | None:intergenic | 30.0% |
| CAATTAGAATAGCATTTCCT+TGG | - | tig0025690:19912-19931 | Msa1424390:intron | 30.0% | |
| ! | ACGAGAAAAGACTGAATTTT+TGG | + | tig0025690:20043-20062 | None:intergenic | 30.0% |
| ! | AAAAATTCAGTCTTTTCTCG+TGG | - | tig0025690:20042-20061 | Msa1424390:intron | 30.0% |
| AATTTATGTACAGGTAGGAT+TGG | - | tig0025690:20446-20465 | Msa1424390:intron | 30.0% | |
| ! | ATTAACTTGATTGCTGTTGA+AGG | - | tig0025690:20524-20543 | Msa1424390:intron | 30.0% |
| !! | TATACCTGTAAGTGTTTTTG+TGG | + | tig0025690:20626-20645 | None:intergenic | 30.0% |
| CAAAAACACTTACAGGTATA+TGG | - | tig0025690:20626-20645 | Msa1424390:intron | 30.0% | |
| GCAAATAACACAATTGATGA+TGG | + | tig0025690:20666-20685 | None:intergenic | 30.0% | |
| !! | ATACAGTTTTGTGTTTTCGT+CGG | - | tig0025690:20699-20718 | Msa1424390:intron | 30.0% |
| ! | TGAGTGTACTGATATTGATT+TGG | - | tig0025690:20734-20753 | Msa1424390:CDS | 30.0% |
| !! | GTACTGATATTGATTTGGAA+AGG | - | tig0025690:20739-20758 | Msa1424390:CDS | 30.0% |
| ! | TCTTGAGATTTGTTTGGAAA+GGG | + | tig0025690:20836-20855 | None:intergenic | 30.0% |
| ! | TTCTTGAGATTTGTTTGGAA+AGG | + | tig0025690:20837-20856 | None:intergenic | 30.0% |
| TAGCAGCTTAATTTAATGAG+CGG | - | tig0025690:20861-20880 | Msa1424390:CDS | 30.0% | |
| ACAAAATTTCAGCCAAAGTA+AGG | - | tig0025690:21037-21056 | Msa1424390:CDS | 30.0% | |
| ! | TAGGTTTACCAAACATTTTG+AGG | + | tig0025690:21331-21350 | None:intergenic | 30.0% |
| ! | GTCTGGTGAATTTGAAATTT+AGG | - | tig0025690:21385-21404 | Msa1424390:intron | 30.0% |
| ! | GGTGAATTTGAAATTTAGGA+TGG | - | tig0025690:21389-21408 | Msa1424390:intron | 30.0% |
| ! | GTTAAACATTGAGGTATCTT+AGG | + | tig0025690:21419-21438 | None:intergenic | 30.0% |
| TTTCAGACAGTTAAACATTG+AGG | + | tig0025690:21428-21447 | None:intergenic | 30.0% | |
| TCTTAATAGGGTTATCACTA+TGG | - | tig0025690:21977-21996 | Msa1424390:five_prime_UTR | 30.0% | |
| CTTAATAGGGTTATCACTAT+GGG | - | tig0025690:21978-21997 | Msa1424390:five_prime_UTR | 30.0% | |
| ! | TCGTTTTCAGTTTGATCATG+CGG | + | tig0025690:16784-16803 | None:intergenic | 35.0% |
| TGAGTTTCAGATCCCAAAAA+CGG | + | tig0025690:16933-16952 | None:intergenic | 35.0% | |
| !!! | GAATCCAATTGTGCGTTTTT+TGG | + | tig0025690:17115-17134 | None:intergenic | 35.0% |
| TTGTTGTATCATCAACTCTG+TGG | - | tig0025690:17413-17432 | Msa1424390:intron | 35.0% | |
| AACTCTGTGGTTGAGAAATT+AGG | - | tig0025690:17426-17445 | Msa1424390:intron | 35.0% | |
| ! | GACTTTGATTTAGGAGATTC+TGG | + | tig0025690:17657-17676 | None:intergenic | 35.0% |
| ! | TTGGGTCTTGACTTTGATTT+AGG | + | tig0025690:17666-17685 | None:intergenic | 35.0% |
| ! | GCATCTTTTGTCTCAAAGTT+GGG | + | tig0025690:17684-17703 | None:intergenic | 35.0% |
| ! | AGCATCTTTTGTCTCAAAGT+TGG | + | tig0025690:17685-17704 | None:intergenic | 35.0% |
| !!! | TTGCACTGTTTTTGCTTCTT+TGG | + | tig0025690:17711-17730 | None:intergenic | 35.0% |
| CAATTGCAGCAAATAAGTTC+CGG | + | tig0025690:17800-17819 | None:intergenic | 35.0% | |
| ! | TATTGTGAATGTTTTGCGTC+GGG | - | tig0025690:17859-17878 | Msa1424390:intron | 35.0% |
| ! | GCAGGCTTAACTTTTTGTAA+AGG | - | tig0025690:18040-18059 | Msa1424390:intron | 35.0% |
| ! | CTTATATTTTGTTACGGAGG+AGG | + | tig0025690:18164-18183 | None:intergenic | 35.0% |
| ! | AGGCCCAAAGTTGATTTATT+TGG | - | tig0025690:18543-18562 | Msa1424390:intron | 35.0% |
| ! | TTCCTTTTATTAGAAGCAGG+AGG | - | tig0025690:18758-18777 | Msa1424390:intron | 35.0% |
| ATCCTCCTGCTTCTAATAAA+AGG | + | tig0025690:18763-18782 | None:intergenic | 35.0% | |
| GATGCAAATCCACTCTTATA+GGG | + | tig0025690:18864-18883 | None:intergenic | 35.0% | |
| TGATGCAAATCCACTCTTAT+AGG | + | tig0025690:18865-18884 | None:intergenic | 35.0% | |
| TCATAATTCCATACCATTGG+AGG | + | tig0025690:18897-18916 | None:intergenic | 35.0% | |
| GTATGGAATTATGACATGAC+AGG | - | tig0025690:18903-18922 | Msa1424390:intron | 35.0% | |
| ! | TTTTCCAACACAAGAAATGC+CGG | + | tig0025690:18988-19007 | None:intergenic | 35.0% |
| ATATAAATGTAGGAGGAGAC+TGG | - | tig0025690:19083-19102 | Msa1424390:intron | 35.0% | |
| TATAAATGTAGGAGGAGACT+GGG | - | tig0025690:19084-19103 | Msa1424390:intron | 35.0% | |
| !! | AGTATTGGTAAAGCACAACA+AGG | - | tig0025690:19115-19134 | Msa1424390:intron | 35.0% |
| ! | GTATTGGTAAAGCACAACAA+GGG | - | tig0025690:19116-19135 | Msa1424390:intron | 35.0% |
| TATTGGTAAAGCACAACAAG+GGG | - | tig0025690:19117-19136 | Msa1424390:intron | 35.0% | |
| !! | GGGTGTCATTGTAAAAAATC+TGG | - | tig0025690:19137-19156 | Msa1424390:intron | 35.0% |
| AACATTCACAGTACTTCTTG+AGG | + | tig0025690:19166-19185 | None:intergenic | 35.0% | |
| AGCGAGAAAAAGAAAAGGTT+CGG | - | tig0025690:19370-19389 | Msa1424390:CDS | 35.0% | |
| AATTAGGTAAACTGGGGAAA+TGG | - | tig0025690:19488-19507 | Msa1424390:CDS | 35.0% | |
| TCATGTAACATTTCCCCATT+AGG | - | tig0025690:19548-19567 | Msa1424390:CDS | 35.0% | |
| GATATATGCTTCCCTTGATT+TGG | - | tig0025690:19643-19662 | Msa1424390:CDS | 35.0% | |
| AACACATTGGACCAAATCAA+GGG | + | tig0025690:19657-19676 | None:intergenic | 35.0% | |
| GTCTCAAAACACTATCCTAT+TGG | - | tig0025690:19711-19730 | Msa1424390:intron | 35.0% | |
| CACTATCCTATTGGAAAGAA+AGG | - | tig0025690:19720-19739 | Msa1424390:intron | 35.0% | |
| ATGAAGCCTTTCTTTCCAAT+AGG | + | tig0025690:19729-19748 | None:intergenic | 35.0% | |
| ! | TTTTCATTGAGAACCAGTAG+GGG | + | tig0025690:19977-19996 | None:intergenic | 35.0% |
| ! | GTTTTCATTGAGAACCAGTA+GGG | + | tig0025690:19978-19997 | None:intergenic | 35.0% |
| AAATCAAGTATGTGACTGTG+AGG | - | tig0025690:20150-20169 | Msa1424390:intron | 35.0% | |
| GCCCTTCAAAATTTATGTAC+AGG | - | tig0025690:20437-20456 | Msa1424390:intron | 35.0% | |
| !!! | TCTGTTTTAGTGCTAGTATC+TGG | - | tig0025690:20595-20614 | Msa1424390:intron | 35.0% |
| AAGTTTGGAAAGGGAAAAAG+CGG | + | tig0025690:20791-20810 | None:intergenic | 35.0% | |
| AATGTGGAGAAGTTTGGAAA+GGG | + | tig0025690:20800-20819 | None:intergenic | 35.0% | |
| AAATGTGGAGAAGTTTGGAA+AGG | + | tig0025690:20801-20820 | None:intergenic | 35.0% | |
| TTGTTTGGAAAGGGAAAAAG+CGG | + | tig0025690:20827-20846 | None:intergenic | 35.0% | |
| AGCAGCTTAATTTAATGAGC+GGG | - | tig0025690:20862-20881 | Msa1424390:CDS | 35.0% | |
| GAATTATTCACCAAGCTCAA+TGG | - | tig0025690:21064-21083 | Msa1424390:CDS | 35.0% | |
| ATTTGTCAATCCATTGAGCT+TGG | + | tig0025690:21077-21096 | None:intergenic | 35.0% | |
| !! | AAGCTCAATGGATTGACAAA+TGG | - | tig0025690:21076-21095 | Msa1424390:CDS | 35.0% |
| !! | TGAGAGTTTGATTTGCCAAA+TGG | - | tig0025690:21174-21193 | Msa1424390:intron | 35.0% |
| CTTGTCATTAGATAACTGTC+TGG | - | tig0025690:21368-21387 | Msa1424390:intron | 35.0% | |
| TAGATAAGCACACAGAAGAT+CGG | - | tig0025690:21607-21626 | Msa1424390:CDS | 35.0% | |
| ! | TGGTAATTGCTCTTGATTTG+AGG | + | tig0025690:21652-21671 | None:intergenic | 35.0% |
| AGAGCAATTACCAAACCAAA+AGG | - | tig0025690:21659-21678 | Msa1424390:CDS | 35.0% | |
| ACATCTTCACAATTGCCTTA+TGG | - | tig0025690:21891-21910 | Msa1424390:five_prime_UTR | 35.0% | |
| ATCACTATGGGCGAAATAAA+TGG | - | tig0025690:21990-22009 | Msa1424390:five_prime_UTR | 35.0% | |
| GGATTAAGGTTCTCATCGTA+GGG | + | tig0025690:16757-16776 | None:intergenic | 40.0% | |
| TGGATTAAGGTTCTCATCGT+AGG | + | tig0025690:16758-16777 | None:intergenic | 40.0% | |
| !!! | AATTTTTGGGGCGATCGAAT+GGG | - | tig0025690:17064-17083 | Msa1424390:CDS | 40.0% |
| !!! | CCAATTGTGCGTTTTTTGGA+GGG | + | tig0025690:17111-17130 | None:intergenic | 40.0% |
| !!! | TCCAATTGTGCGTTTTTTGG+AGG | + | tig0025690:17112-17131 | None:intergenic | 40.0% |
| ! | ATTCCGTTAAGAAGCTTGCT+AGG | - | tig0025690:17131-17150 | Msa1424390:CDS | 40.0% |
| ! | CGGAACTTATTTGCTGCAAT+TGG | - | tig0025690:17798-17817 | Msa1424390:intron | 40.0% |
| ! | ATTGTGAATGTTTTGCGTCG+GGG | - | tig0025690:17860-17879 | Msa1424390:intron | 40.0% |
| AACGCAATCCAAATGCCTTT+AGG | - | tig0025690:17971-17990 | Msa1424390:intron | 40.0% | |
| !!! | ATTTTCGGCCTAAAGGCATT+TGG | + | tig0025690:17982-18001 | None:intergenic | 40.0% |
| TTGTTATCACGTGTTCCATG+AGG | + | tig0025690:18015-18034 | None:intergenic | 40.0% | |
| TCATGGAACACGTGATAACA+AGG | - | tig0025690:18014-18033 | Msa1424390:intron | 40.0% | |
| ! | AACTTTGGGCCTGTTTGTTT+TGG | + | tig0025690:18535-18554 | None:intergenic | 40.0% |
| ! | AGTGGATTTGCATCAGAAGT+TGG | - | tig0025690:18870-18889 | Msa1424390:intron | 40.0% |
| GTGGATTTGCATCAGAAGTT+GGG | - | tig0025690:18871-18890 | Msa1424390:intron | 40.0% | |
| ATAAATGTAGGAGGAGACTG+GGG | - | tig0025690:19085-19104 | Msa1424390:intron | 40.0% | |
| GACTGGGGAAGTTAAAGTAT+TGG | - | tig0025690:19100-19119 | Msa1424390:intron | 40.0% | |
| ! | CAGAACAAAGAATGTTGGCT+TGG | + | tig0025690:19190-19209 | None:intergenic | 40.0% |
| ! | TTTCTTTTTCTCGCTACTGG+TGG | + | tig0025690:19365-19384 | None:intergenic | 40.0% |
| ! | CCTTTTCTTTTTCTCGCTAC+TGG | + | tig0025690:19368-19387 | None:intergenic | 40.0% |
| CCAGTAGCGAGAAAAAGAAA+AGG | - | tig0025690:19365-19384 | Msa1424390:CDS | 40.0% | |
| AAAGAAAAGGTTCGGAACTC+TGG | - | tig0025690:19378-19397 | Msa1424390:CDS | 40.0% | |
| ATAATACTGCAGGCAGTTCA+GGG | - | tig0025690:19453-19472 | Msa1424390:CDS | 40.0% | |
| CTGCAAAATGCTGTCTCAAT+TGG | + | tig0025690:19528-19547 | None:intergenic | 40.0% | |
| GAACACATTGGACCAAATCA+AGG | + | tig0025690:19658-19677 | None:intergenic | 40.0% | |
| CTTCCATCTTTGCTCAATGT+GGG | - | tig0025690:19773-19792 | Msa1424390:intron | 40.0% | |
| TATCCCACATTGAGCAAAGA+TGG | + | tig0025690:19779-19798 | None:intergenic | 40.0% | |
| ! | CCATCGCAAACTCAAACTTT+TGG | + | tig0025690:19819-19838 | None:intergenic | 40.0% |
| ! | CCAAAAGTTTGAGTTTGCGA+TGG | - | tig0025690:19816-19835 | Msa1424390:intron | 40.0% |
| GTGAATTCCACTATGAGTGT+CGG | + | tig0025690:19856-19875 | None:intergenic | 40.0% | |
| GGAATTCACTCTAATCCCTT+TGG | - | tig0025690:19867-19886 | Msa1424390:intron | 40.0% | |
| AACCTTAAACCTGCACCAAA+GGG | + | tig0025690:19885-19904 | None:intergenic | 40.0% | |
| AAACCTTAAACCTGCACCAA+AGG | + | tig0025690:19886-19905 | None:intergenic | 40.0% | |
| TCCTTGGGTTTCTCATTCTT+TGG | - | tig0025690:19928-19947 | Msa1424390:intron | 40.0% | |
| ACCAAAGAATGAGAAACCCA+AGG | + | tig0025690:19932-19951 | None:intergenic | 40.0% | |
| TTTCATTGAGAACCAGTAGG+GGG | + | tig0025690:19976-19995 | None:intergenic | 40.0% | |
| ! | CGTTTTCATTGAGAACCAGT+AGG | + | tig0025690:19979-19998 | None:intergenic | 40.0% |
| TACCACGATAAGTTCACTTC+TGG | - | tig0025690:20191-20210 | Msa1424390:intron | 40.0% | |
| ACAGGAGACAAAGATGAAGA+GGG | + | tig0025690:20385-20404 | None:intergenic | 40.0% | |
| TTTGAAGGGCCTAATGTTGA+AGG | + | tig0025690:20427-20446 | None:intergenic | 40.0% | |
| TTTAGTGCTAGTATCTGGAC+AGG | - | tig0025690:20600-20619 | Msa1424390:intron | 40.0% | |
| AGTTTGGAAAGGGAAAAAGC+GGG | + | tig0025690:20790-20809 | None:intergenic | 40.0% | |
| TGTTTGGAAAGGGAAAAAGC+GGG | + | tig0025690:20826-20845 | None:intergenic | 40.0% | |
| CGTTTGACTACACGTAAACA+AGG | + | tig0025690:21150-21169 | None:intergenic | 40.0% | |
| CAAACCAAAAGGAAGCTGAT+GGG | - | tig0025690:21670-21689 | Msa1424390:exon | 40.0% | |
| AAACCAAAAGGAAGCTGATG+GGG | - | tig0025690:21671-21690 | Msa1424390:exon | 40.0% | |
| !!! | CAGGACTGGTTTTATCAGTT+TGG | + | tig0025690:21731-21750 | None:intergenic | 40.0% |
| !! | TGAACTGGAATTTTCAGGAC+TGG | + | tig0025690:21745-21764 | None:intergenic | 40.0% |
| ! | CCATCTGAACTGGAATTTTC+AGG | + | tig0025690:21750-21769 | None:intergenic | 40.0% |
| CCTGAAAATTCCAGTTCAGA+TGG | - | tig0025690:21747-21766 | Msa1424390:five_prime_UTR | 40.0% | |
| !! | ATGGTGCTGATGTTCCAAAA+GGG | - | tig0025690:21766-21785 | Msa1424390:five_prime_UTR | 40.0% |
| CACATCAATGCTAAAGTTCC+AGG | + | tig0025690:21804-21823 | None:intergenic | 40.0% | |
| TCACAATTGCCTTATGGACA+AGG | - | tig0025690:21897-21916 | Msa1424390:five_prime_UTR | 40.0% | |
| TCTTTCGTTCCTTGTCCATA+AGG | + | tig0025690:21909-21928 | None:intergenic | 40.0% | |
| ! | GATCATGCGGTTGTGGATTA+AGG | + | tig0025690:16771-16790 | None:intergenic | 45.0% |
| TCAGTTTGATCATGCGGTTG+TGG | + | tig0025690:16778-16797 | None:intergenic | 45.0% | |
| TTCAAAAGCTCGTGAGAGAG+AGG | - | tig0025690:16838-16857 | Msa1424390:CDS | 45.0% | |
| TCAAAAGCTCGTGAGAGAGA+GGG | - | tig0025690:16839-16858 | Msa1424390:CDS | 45.0% | |
| !!! | GAATTTTTGGGGCGATCGAA+TGG | - | tig0025690:17063-17082 | Msa1424390:CDS | 45.0% |
| CCCTCCAAAAAACGCACAAT+TGG | - | tig0025690:17108-17127 | Msa1424390:CDS | 45.0% | |
| CTGCCTAGCAAGCTTCTTAA+CGG | + | tig0025690:17137-17156 | None:intergenic | 45.0% | |
| ! | CAGCTCGATTTCAACGCTTT+TGG | - | tig0025690:17154-17173 | Msa1424390:intron | 45.0% |
| ! | CTCGATTTCAACGCTTTTGG+TGG | - | tig0025690:17157-17176 | Msa1424390:intron | 45.0% |
| CAGCAAATAAGTTCCGGCAA+AGG | + | tig0025690:17794-17813 | None:intergenic | 45.0% | |
| !! | GCGTTCTAAAGTTGCCTCAA+CGG | + | tig0025690:17956-17975 | None:intergenic | 45.0% |
| ! | TGAGGACTGCTCGCAATTTT+CGG | + | tig0025690:17997-18016 | None:intergenic | 45.0% |
| AAAATTGCGAGCAGTCCTCA+TGG | - | tig0025690:17997-18016 | Msa1424390:intron | 45.0% | |
| CACGTGATAACAAGGTATGC+AGG | - | tig0025690:18022-18041 | Msa1424390:intron | 45.0% | |
| AACAGACAATGATGCGCTAG+CGG | + | tig0025690:18137-18156 | None:intergenic | 45.0% | |
| AATCCACTCTTATAGGGACG+TGG | + | tig0025690:18858-18877 | None:intergenic | 45.0% | |
| AAAGCCGGCATTTCTTGTGT+TGG | - | tig0025690:18981-19000 | Msa1424390:intron | 45.0% | |
| CAATATGGCGTATCTTCAGC+AGG | - | tig0025690:19289-19308 | Msa1424390:intron | 45.0% | |
| AGCTCCAGTTATAGCAGCAT+TGG | + | tig0025690:19318-19337 | None:intergenic | 45.0% | |
| GCTGCTATAACTGGAGCTAT+TGG | - | tig0025690:19320-19339 | Msa1424390:intron | 45.0% | |
| ! | TGGTGGTGATGAATAACCAG+AGG | + | tig0025690:19348-19367 | None:intergenic | 45.0% |
| GATCCATCGTTTGGAAAGCT+AGG | - | tig0025690:19413-19432 | Msa1424390:CDS | 45.0% | |
| ! | TGTCCTAGCTTTCCAAACGA+TGG | + | tig0025690:19419-19438 | None:intergenic | 45.0% |
| GTTTGGAAAGCTAGGACAAC+AGG | - | tig0025690:19421-19440 | Msa1424390:CDS | 45.0% | |
| GATAATACTGCAGGCAGTTC+AGG | - | tig0025690:19452-19471 | Msa1424390:CDS | 45.0% | |
| TAATACTGCAGGCAGTTCAG+GGG | - | tig0025690:19454-19473 | Msa1424390:CDS | 45.0% | |
| ! | GGCAGTTCAGGGGTTTATTT+TGG | - | tig0025690:19464-19483 | Msa1424390:CDS | 45.0% |
| !! | GACAGTCTAGCTCTCTTCAT+GGG | + | tig0025690:19694-19713 | None:intergenic | 45.0% |
| !! | AGACAGTCTAGCTCTCTTCA+TGG | + | tig0025690:19695-19714 | None:intergenic | 45.0% |
| GCTTCCATCTTTGCTCAATG+TGG | - | tig0025690:19772-19791 | Msa1424390:intron | 45.0% | |
| ! | ATCCCTTTGGTGCAGGTTTA+AGG | - | tig0025690:19880-19899 | Msa1424390:intron | 45.0% |
| TTCATTGAGAACCAGTAGGG+GGG | + | tig0025690:19975-19994 | None:intergenic | 45.0% | |
| GACCAGAAGTGAACTTATCG+TGG | + | tig0025690:20196-20215 | None:intergenic | 45.0% | |
| TATCAGGCAAATCCTGTCAG+AGG | - | tig0025690:20349-20368 | Msa1424390:intron | 45.0% | |
| GACAGGAGACAAAGATGAAG+AGG | + | tig0025690:20386-20405 | None:intergenic | 45.0% | |
| AATGTTGAAGGTCCAACACG+AGG | + | tig0025690:20415-20434 | None:intergenic | 45.0% | |
| CGTGTTGGACCTTCAACATT+AGG | - | tig0025690:20415-20434 | Msa1424390:intron | 45.0% | |
| AAACAGAGCAAAGCTCCTTC+AGG | + | tig0025690:20582-20601 | None:intergenic | 45.0% | |
| CAGGCCACAAAAACACTTAC+AGG | - | tig0025690:20619-20638 | Msa1424390:intron | 45.0% | |
| GTTTGGAAAGGGAAAAAGCG+GGG | + | tig0025690:20789-20808 | None:intergenic | 45.0% | |
| GGGGTAAATGTGGAGAAGTT+TGG | + | tig0025690:20806-20825 | None:intergenic | 45.0% | |
| GTTTGGAAAGGGAAAAAGCG+GGG | + | tig0025690:20789-20808 | None:intergenic | 45.0% | |
| ! | TGAGCGGGCATTGTCTATTA+TGG | - | tig0025690:20877-20896 | Msa1424390:CDS | 45.0% |
| ! | GCTGCTGTTTACAGCTCAAA+AGG | + | tig0025690:21209-21228 | None:intergenic | 45.0% |
| TAAACAGCAGCTTCCTCTGT+AGG | - | tig0025690:21218-21237 | Msa1424390:intron | 45.0% | |
| !! | CTTTCCTGCTTTTCCTACAG+AGG | + | tig0025690:21234-21253 | None:intergenic | 45.0% |
| CTCTGTAGGAAAAGCAGGAA+AGG | - | tig0025690:21232-21251 | Msa1424390:intron | 45.0% | |
| CTATGGCGCCTCAAAATGTT+TGG | - | tig0025690:21320-21339 | Msa1424390:intron | 45.0% | |
| GACAAGCAATCCTGACAACT+GGG | + | tig0025690:21354-21373 | None:intergenic | 45.0% | |
| TGACAAGCAATCCTGACAAC+TGG | + | tig0025690:21355-21374 | None:intergenic | 45.0% | |
| !! | CCATCAGCTTCCTTTTGGTT+TGG | + | tig0025690:21672-21691 | None:intergenic | 45.0% |
| CCAAACCAAAAGGAAGCTGA+TGG | - | tig0025690:21669-21688 | Msa1424390:exon | 45.0% | |
| AACATCAGCACCATCTGAAC+TGG | + | tig0025690:21760-21779 | None:intergenic | 45.0% | |
| !! | GATGGTGCTGATGTTCCAAA+AGG | - | tig0025690:21765-21784 | Msa1424390:five_prime_UTR | 45.0% |
| GCTAAAGTTCCAGGAGACAT+TGG | + | tig0025690:21795-21814 | None:intergenic | 45.0% | |
| AGATCTATGCAGAGCAAGAG+AGG | - | tig0025690:21928-21947 | Msa1424390:five_prime_UTR | 45.0% | |
| GATCGAATGGGTGAAGGTGA+GGG | - | tig0025690:17076-17095 | Msa1424390:CDS | 50.0% | |
| CCTAAGACTGACCCCACTTT+GGG | + | tig0025690:17250-17269 | None:intergenic | 50.0% | |
| GCGCAACAACAAGTGCATAG+AGG | + | tig0025690:17772-17791 | None:intergenic | 50.0% | |
| !! | ACTTGTTGTTGCGCCTTTGC+CGG | - | tig0025690:17778-17797 | Msa1424390:intron | 50.0% |
| ! | GCTCGCAATTTTCGGCCTAA+AGG | + | tig0025690:17989-18008 | None:intergenic | 50.0% |
| CAACCACGTCCCTATAAGAG+TGG | - | tig0025690:18852-18871 | Msa1424390:intron | 50.0% | |
| ATCAGAAGTTGGGCCTCCAA+TGG | - | tig0025690:18881-18900 | Msa1424390:intron | 50.0% | |
| AAGTTGGGCCTCCAATGGTA+TGG | - | tig0025690:18886-18905 | Msa1424390:intron | 50.0% | |
| TGAAGGAAGTGAAGAGCGAC+AGG | - | tig0025690:19241-19260 | Msa1424390:intron | 50.0% | |
| GCAGCCAATGCTGCTATAAC+TGG | - | tig0025690:19311-19330 | Msa1424390:intron | 50.0% | |
| !! | ACTGGAGCTATTGGTTCCTC+TGG | - | tig0025690:19329-19348 | Msa1424390:CDS | 50.0% |
| AACGATGGATCCCTGATGGA+CGG | + | tig0025690:19404-19423 | None:intergenic | 50.0% | |
| TCCATCAGGGATCCATCGTT+TGG | - | tig0025690:19404-19423 | Msa1424390:CDS | 50.0% | |
| TCCAAACGATGGATCCCTGA+TGG | + | tig0025690:19408-19427 | None:intergenic | 50.0% | |
| ! | CACTCTAATCCCTTTGGTGC+AGG | - | tig0025690:19873-19892 | Msa1424390:intron | 50.0% |
| TCATTGAGAACCAGTAGGGG+GGG | + | tig0025690:19974-19993 | None:intergenic | 50.0% | |
| GCTTCAGTCGTCGTAGCAAA+AGG | + | tig0025690:20002-20021 | None:intergenic | 50.0% | |
| CAAGTATGTGACTGTGAGGC+TGG | - | tig0025690:20154-20173 | Msa1424390:intron | 50.0% | |
| AAGCTTCCTGCAGTTGAGAG+TGG | - | tig0025690:20256-20275 | Msa1424390:intron | 50.0% | |
| TAGCTTCCACTCTCAACTGC+AGG | + | tig0025690:20265-20284 | None:intergenic | 50.0% | |
| !! | AAAGATGAAGAGGGTGCTGC+AGG | + | tig0025690:20376-20395 | None:intergenic | 50.0% |
| ! | AAGGTCCAACACGAGGTACT+GGG | + | tig0025690:20408-20427 | None:intergenic | 50.0% |
| CATACAACCACAGCACCTGA+AGG | - | tig0025690:20564-20583 | Msa1424390:intron | 50.0% | |
| GGGAAAAAGCGGGGTAAATG+TGG | + | tig0025690:20780-20799 | None:intergenic | 50.0% | |
| GGGAAAAAGCGGGGTAAATG+TGG | + | tig0025690:20780-20799 | None:intergenic | 50.0% | |
| GCTTCCTCTGTAGGAAAAGC+AGG | - | tig0025690:21227-21246 | Msa1424390:intron | 50.0% | |
| GGTAAACCTACCCAGTTGTC+AGG | - | tig0025690:21341-21360 | Msa1424390:intron | 50.0% | |
| AGCAATCCTGACAACTGGGT+AGG | + | tig0025690:21350-21369 | None:intergenic | 50.0% | |
| ! | TCTCCCCATCAGCTTCCTTT+TGG | + | tig0025690:21677-21696 | None:intergenic | 50.0% |
| AGCTGATGGGGAGAAAGTTG+TGG | - | tig0025690:21683-21702 | Msa1424390:five_prime_UTR | 50.0% | |
| ! | GTGCTGATGTTCCAAAAGGG+AGG | - | tig0025690:21769-21788 | Msa1424390:five_prime_UTR | 50.0% |
| AAAGCTCGTGAGAGAGAGGG+AGG | - | tig0025690:16842-16861 | Msa1424390:CDS | 55.0% | |
| !! | AAAGTCCCTCGCGCCGTTTT+TGG | - | tig0025690:16917-16936 | Msa1424390:CDS | 55.0% |
| !!! | AAGTCCCTCGCGCCGTTTTT+GGG | - | tig0025690:16918-16937 | Msa1424390:CDS | 55.0% |
| AGATCCCAAAAACGGCGCGA+GGG | + | tig0025690:16925-16944 | None:intergenic | 55.0% | |
| CGATCGAATGGGTGAAGGTG+AGG | - | tig0025690:17075-17094 | Msa1424390:CDS | 55.0% | |
| ! | GCAGGAAGAGGAGGAAGTGT+CGG | + | tig0025690:17226-17245 | None:intergenic | 55.0% |
| ACTTTGGGTGCAGGAAGAGG+AGG | + | tig0025690:17235-17254 | None:intergenic | 55.0% | |
| TCCTCTTCCTGCACCCAAAG+TGG | - | tig0025690:17234-17253 | Msa1424390:intron | 55.0% | |
| CCTCTTCCTGCACCCAAAGT+GGG | - | tig0025690:17235-17254 | Msa1424390:intron | 55.0% | |
| CTCTTCCTGCACCCAAAGTG+GGG | - | tig0025690:17236-17255 | Msa1424390:intron | 55.0% | |
| CCCAAAGTGGGGTCAGTCTT+AGG | - | tig0025690:17247-17266 | Msa1424390:intron | 55.0% | |
| GCCTAAGACTGACCCCACTT+TGG | + | tig0025690:17251-17270 | None:intergenic | 55.0% | |
| GCGTCGGGGATATATTGCGA+TGG | - | tig0025690:17874-17893 | Msa1424390:intron | 55.0% | |
| !! | GAGCGACAGGCTTTGTTCCA+TGG | - | tig0025690:19254-19273 | Msa1424390:intron | 55.0% |
| GAGTTTGCGATGGCCCATTC+TGG | - | tig0025690:19826-19845 | Msa1424390:intron | 55.0% | |
| !! | GAGTGTCGGACAGCCAGAAT+GGG | + | tig0025690:19842-19861 | None:intergenic | 55.0% |
| !! | TGAGTGTCGGACAGCCAGAA+TGG | + | tig0025690:19843-19862 | None:intergenic | 55.0% |
| TGGCTGTCCGACACTCATAG+TGG | - | tig0025690:19846-19865 | Msa1424390:intron | 55.0% | |
| CATTGAGAACCAGTAGGGGG+GGG | + | tig0025690:19973-19992 | None:intergenic | 55.0% | |
| GAAGGTCCAACACGAGGTAC+TGG | + | tig0025690:20409-20428 | None:intergenic | 55.0% | |
| ! | CAAAGCTCCTTCAGGTGCTG+TGG | + | tig0025690:20574-20593 | None:intergenic | 55.0% |
| !! | GGAGACATTGGCCTCCCTTT+TGG | + | tig0025690:21783-21802 | None:intergenic | 55.0% |
| AAAGGGAGGCCAATGTCTCC+TGG | - | tig0025690:21783-21802 | Msa1424390:five_prime_UTR | 55.0% | |
| TGAGCCATCGACGCAGTTGA+GGG | + | tig0025690:21861-21880 | None:intergenic | 55.0% | |
| ATGAGCCATCGACGCAGTTG+AGG | + | tig0025690:21862-21881 | None:intergenic | 55.0% | |
| CAGATCCCAAAAACGGCGCG+AGG | + | tig0025690:16926-16945 | None:intergenic | 60.0% | |
| TGGGGCGATCGAATGGGTGA+AGG | - | tig0025690:17070-17089 | Msa1424390:CDS | 60.0% | |
| !! | CAACGCTTTTGGTGGCACGC+CGG | - | tig0025690:17165-17184 | Msa1424390:intron | 60.0% |
| ! | TCCGGCAGAGGTGCAGTTAC+CGG | + | tig0025690:17187-17206 | None:intergenic | 60.0% |
| !! | GAAGTGTCGGCGGTGGTTGT+GGG | + | tig0025690:17213-17232 | None:intergenic | 60.0% |
| !! | GGAAGAGGAGGAAGTGTCGG+CGG | + | tig0025690:17223-17242 | None:intergenic | 60.0% |
| CCCACTTTGGGTGCAGGAAG+AGG | + | tig0025690:17238-17257 | None:intergenic | 60.0% | |
| ACTGACCCCACTTTGGGTGC+AGG | + | tig0025690:17244-17263 | None:intergenic | 60.0% | |
| GGCAAGACGAGAAGCCGTTG+AGG | - | tig0025690:17939-17958 | Msa1424390:intron | 60.0% | |
| GGAACTCTGGCCGTCCATCA+GGG | - | tig0025690:19391-19410 | Msa1424390:CDS | 60.0% | |
| !! | CCAACACGAGGTACTGGGAC+AGG | + | tig0025690:20403-20422 | None:intergenic | 60.0% |
| CCTGTCCCAGTACCTCGTGT+TGG | - | tig0025690:20400-20419 | Msa1424390:intron | 60.0% | |
| AGCCATCGACGCAGTTGAGG+GGG | + | tig0025690:21859-21878 | None:intergenic | 60.0% | |
| GAGCCATCGACGCAGTTGAG+GGG | + | tig0025690:21860-21879 | None:intergenic | 60.0% | |
| GCCGGTAACTGCACCTCTGC+CGG | - | tig0025690:17183-17202 | Msa1424390:intron | 65.0% | |
| GGTTGTGGGTGTTCCGGCAG+AGG | + | tig0025690:17199-17218 | None:intergenic | 65.0% | |
| GGCGGTGGTTGTGGGTGTTC+CGG | + | tig0025690:17205-17224 | None:intergenic | 65.0% | |
| !! | GGAAGTGTCGGCGGTGGTTG+TGG | + | tig0025690:17214-17233 | None:intergenic | 65.0% |
| !! | AGAGGAGGAAGTGTCGGCGG+TGG | + | tig0025690:17220-17239 | None:intergenic | 65.0% |
| CGGAACTCTGGCCGTCCATC+AGG | - | tig0025690:19390-19409 | Msa1424390:CDS | 65.0% | |
| AGAACCAGTAGGGGGGGGCT+AGG | + | tig0025690:19968-19987 | None:intergenic | 65.0% | |
| ! | GGTGCTGCAGGACCTCTGAC+AGG | + | tig0025690:20364-20383 | None:intergenic | 65.0% |
| TGCCCCCTCAACTGCGTCGA+TGG | - | tig0025690:21854-21873 | Msa1424390:five_prime_UTR | 65.0% | |
| GAAGCCTAGCCCCCCCCTAC+TGG | - | tig0025690:19961-19980 | Msa1424390:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025690 | gene | 16744 | 22019 | 16744 | ID=Msa1424390;Name=Msa1424390 |
| tig0025690 | mRNA | 16744 | 22019 | 16744 | ID=Msa1424390-mRNA-1;Parent=Msa1424390;Name=Msa1424390-mRNA-1;_AED=0.18;_eAED=0.18;_QI=338|1|0.85|1|1|1|7|0|478 |
| tig0025690 | exon | 16744 | 17171 | 16744 | ID=Msa1424390-mRNA-1:exon:3783;Parent=Msa1424390-mRNA-1 |
| tig0025690 | exon | 18123 | 18217 | 18123 | ID=Msa1424390-mRNA-1:exon:3782;Parent=Msa1424390-mRNA-1 |
| tig0025690 | exon | 18305 | 18408 | 18305 | ID=Msa1424390-mRNA-1:exon:3781;Parent=Msa1424390-mRNA-1 |
| tig0025690 | exon | 19321 | 19668 | 19321 | ID=Msa1424390-mRNA-1:exon:3780;Parent=Msa1424390-mRNA-1 |
| tig0025690 | exon | 20728 | 20905 | 20728 | ID=Msa1424390-mRNA-1:exon:3779;Parent=Msa1424390-mRNA-1 |
| tig0025690 | exon | 21006 | 21113 | 21006 | ID=Msa1424390-mRNA-1:exon:3778;Parent=Msa1424390-mRNA-1 |
| tig0025690 | exon | 21506 | 22019 | 21506 | ID=Msa1424390-mRNA-1:exon:3777;Parent=Msa1424390-mRNA-1 |
| tig0025690 | five_prime_UTR | 21682 | 22019 | 21682 | ID=Msa1424390-mRNA-1:five_prime_utr;Parent=Msa1424390-mRNA-1 |
| tig0025690 | CDS | 21506 | 21681 | 21506 | ID=Msa1424390-mRNA-1:cds;Parent=Msa1424390-mRNA-1 |
| tig0025690 | CDS | 21006 | 21113 | 21006 | ID=Msa1424390-mRNA-1:cds;Parent=Msa1424390-mRNA-1 |
| tig0025690 | CDS | 20728 | 20905 | 20728 | ID=Msa1424390-mRNA-1:cds;Parent=Msa1424390-mRNA-1 |
| tig0025690 | CDS | 19321 | 19668 | 19321 | ID=Msa1424390-mRNA-1:cds;Parent=Msa1424390-mRNA-1 |
| tig0025690 | CDS | 18305 | 18408 | 18305 | ID=Msa1424390-mRNA-1:cds;Parent=Msa1424390-mRNA-1 |
| tig0025690 | CDS | 18123 | 18217 | 18123 | ID=Msa1424390-mRNA-1:cds;Parent=Msa1424390-mRNA-1 |
| tig0025690 | CDS | 16744 | 17171 | 16744 | ID=Msa1424390-mRNA-1:cds;Parent=Msa1424390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
