Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424380 | A0A396GR76 | 73.203 | 153 | 8 | 2 | 28 | 180 | 476 | 595 | 7.39e-57 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1424380 | Msa1424390 | 0.847627 | 1.025935e-59 | -8.615850e-47 |
| Msa1338250 | Msa1424380 | -0.805802 | 1.119673e-49 | -8.615850e-47 |
| Msa1072600 | Msa1424380 | -0.803790 | 2.945823e-49 | -8.615850e-47 |
| Msa1181170 | Msa1424380 | 0.840358 | 9.126773e-58 | -8.615850e-47 |
| Msa0576520 | Msa1424380 | 0.876809 | 1.039409e-68 | -8.615850e-47 |
| Msa0576530 | Msa1424380 | 0.827347 | 1.644732e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424380 | MtrunA17_Chr8g0390351 | 73.203 | 153 | 8 | 2 | 28 | 180 | 476 | 595 | 1.42e-60 | 197 |
| Msa1424380 | MtrunA17_Chr6g0485811 | 50.000 | 86 | 32 | 2 | 28 | 113 | 522 | 596 | 1.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTCTTGTTTCAGAAAA+TGG | 0.136929 | tig0025690:-15836 | Msa1424380:CDS |
| TTGAGTCTCTAACTCACTTC+TGG | 0.285807 | tig0025690:+16222 | None:intergenic |
| TGCTTTGCCGACGTTATTAC+AGG | 0.297076 | tig0025690:+16129 | None:intergenic |
| AATTTAGAGAACTGTGATAC+TGG | 0.327348 | tig0025690:-16620 | Msa1424380:CDS |
| ATTCAGTTTGCATCGAAGAT+AGG | 0.328810 | tig0025690:-16578 | Msa1424380:CDS |
| TATATCTATTGTTCGACCTT+CGG | 0.358406 | tig0025690:+15803 | None:intergenic |
| GCAGTCTTGTTTCAGAAAAT+GGG | 0.359660 | tig0025690:-15835 | Msa1424380:CDS |
| TGCCATCACTTCAACGCCTT+TGG | 0.368657 | tig0025690:-15900 | Msa1424380:CDS |
| TGCCATCACTTCAACGCCTT+TGG | 0.368657 | tig0025690:-15933 | Msa1424380:CDS |
| CACCATCACTTCAACACCTT+TGG | 0.384125 | tig0025690:-15966 | Msa1424380:CDS |
| CACCATCACTTCAACACCTT+TGG | 0.384125 | tig0025690:-16032 | Msa1424380:CDS |
| TTTCAGTGCGATTGATGATT+GGG | 0.398288 | tig0025690:+16194 | None:intergenic |
| CACCATCACTTCAGCACCTA+TGG | 0.418273 | tig0025690:-16098 | Msa1424380:CDS |
| CGTCACTTCAACAACACCTT+TGG | 0.427483 | tig0025690:-15864 | Msa1424380:CDS |
| GGCAGCGCAACAGCAAGGAC+TGG | 0.462015 | tig0025690:-16158 | Msa1424380:CDS |
| CTGTTGCGCTGCCTCAGTAC+TGG | 0.464401 | tig0025690:+16168 | None:intergenic |
| CACCATCACTTCAACACCTT+CGG | 0.466974 | tig0025690:-15999 | Msa1424380:CDS |
| TTCAGTTTGCATCGAAGATA+GGG | 0.475902 | tig0025690:-16577 | Msa1424380:CDS |
| GCAGCGCAACAGCAAGGACT+GGG | 0.486221 | tig0025690:-16157 | Msa1424380:CDS |
| CACCATCACTTCAACACCTA+TGG | 0.496104 | tig0025690:-16065 | Msa1424380:CDS |
| GACCAAAGGCGTTGAAGTGA+TGG | 0.518047 | tig0025690:+15898 | None:intergenic |
| GACCAAAGGCGTTGAAGTGA+TGG | 0.518047 | tig0025690:+15931 | None:intergenic |
| CAGTCTTGTTTCAGAAAATG+GGG | 0.524569 | tig0025690:-15834 | Msa1424380:CDS |
| AAGTGAGTTAGAGACTCAAA+AGG | 0.529599 | tig0025690:-16218 | Msa1424380:CDS |
| GTTGAAGTGATGGCATTGCA+AGG | 0.542129 | tig0025690:+15908 | None:intergenic |
| GTTGAAGTGATGGCATTGCA+AGG | 0.542129 | tig0025690:+15941 | None:intergenic |
| TTGAAGTGATGGTGTTGCAT+GGG | 0.553400 | tig0025690:+15975 | None:intergenic |
| TTGAAGTGATGGTGTTGCAT+GGG | 0.553400 | tig0025690:+16008 | None:intergenic |
| GTTGAAGTGATGGTGTTGCA+TGG | 0.579282 | tig0025690:+15974 | None:intergenic |
| GTTGAAGTGATGGTGTTGCA+TGG | 0.579282 | tig0025690:+16007 | None:intergenic |
| ACGGTGTTGCAAGGGACCAA+AGG | 0.581749 | tig0025690:+15884 | None:intergenic |
| AATAACGTCGGCAAAGCAGT+TGG | 0.582782 | tig0025690:-16124 | Msa1424380:CDS |
| GTTGAAGTGACGGTGTTGCA+AGG | 0.590921 | tig0025690:+15875 | None:intergenic |
| ACAAGACTGCAAGGGACCAA+AGG | 0.597556 | tig0025690:+15848 | None:intergenic |
| GACCATAGGTGCTGAAGTGA+TGG | 0.600765 | tig0025690:+16096 | None:intergenic |
| GACCATAGGTGTTGAAGTGA+TGG | 0.600889 | tig0025690:+16063 | None:intergenic |
| ATGGTGTTGCAAGGGACCAT+AGG | 0.603345 | tig0025690:+16049 | None:intergenic |
| ATGGTGTTGCAAGGGACCAT+AGG | 0.603345 | tig0025690:+16082 | None:intergenic |
| GACCAAAGGTGTTGAAGTGA+TGG | 0.604817 | tig0025690:+15964 | None:intergenic |
| TTTGCATCGAAGATAGGGAA+TGG | 0.606691 | tig0025690:-16572 | Msa1424380:intron |
| ATGGCATTGCAAGGGACCAA+AGG | 0.608714 | tig0025690:+15950 | None:intergenic |
| TTTGCCGACGTTATTACAGG+TGG | 0.614550 | tig0025690:+16132 | None:intergenic |
| ATGGCATTGCAAGGGACCAA+AGG | 0.615195 | tig0025690:+15917 | None:intergenic |
| TTGAAGTGACGGTGTTGCAA+GGG | 0.618089 | tig0025690:+15876 | None:intergenic |
| AAATGGGGAAATTAAGCCGA+AGG | 0.620465 | tig0025690:-15819 | Msa1424380:CDS |
| GACCAAAGGTGTTGAAGTGA+TGG | 0.620830 | tig0025690:+16030 | None:intergenic |
| GTTGAAGTGATGGTGTTGCA+AGG | 0.625625 | tig0025690:+16040 | None:intergenic |
| GTTGAAGTGATGGTGTTGCA+AGG | 0.625625 | tig0025690:+16073 | None:intergenic |
| TTGAAGTGATGGTGTTGCAA+GGG | 0.633210 | tig0025690:+16041 | None:intergenic |
| TTGAAGTGATGGTGTTGCAA+GGG | 0.633210 | tig0025690:+16074 | None:intergenic |
| ATGGTGTTGCATGGGACCGA+AGG | 0.633467 | tig0025690:+15983 | None:intergenic |
| GACCGAAGGTGTTGAAGTGA+TGG | 0.634904 | tig0025690:+15997 | None:intergenic |
| ACTGAGGCAGCGCAACAGCA+AGG | 0.636738 | tig0025690:-16163 | Msa1424380:CDS |
| ATGGTGTTGCATGGGACCAA+AGG | 0.637170 | tig0025690:+16016 | None:intergenic |
| TTGAAGTGATGGCATTGCAA+GGG | 0.640906 | tig0025690:+15909 | None:intergenic |
| TTGAAGTGATGGCATTGCAA+GGG | 0.640906 | tig0025690:+15942 | None:intergenic |
| CAAAGGTGTTGTTGAAGTGA+CGG | 0.642763 | tig0025690:+15865 | None:intergenic |
| TTTCTGAAACAAGACTGCAA+GGG | 0.692177 | tig0025690:+15840 | None:intergenic |
| GGATCCACCTGTAATAACGT+CGG | 0.698709 | tig0025690:-16136 | Msa1424380:CDS |
| CACTGAAAATACCAGTACTG+AGG | 0.701584 | tig0025690:-16179 | Msa1424380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTGAATATTTTTTGAAAAT+TGG | + | tig0025690:15852-15871 | None:intergenic | 15.0% |
| !!! | ACTGAATATTTTTTGAAAAT+TGG | + | tig0025690:15852-15871 | None:intergenic | 15.0% |
| !! | TGAAATTAGGAAAAGAAATT+AGG | + | tig0025690:16179-16198 | None:intergenic | 20.0% |
| !! | TGAAATTAGGAAAAGAAATT+AGG | + | tig0025690:16179-16198 | None:intergenic | 20.0% |
| ! | AATAAATACACTACAGAAGT+TGG | + | tig0025690:16066-16085 | None:intergenic | 25.0% |
| ! | AATAAATACACTACAGAAGT+TGG | + | tig0025690:16066-16085 | None:intergenic | 25.0% |
| AATTTAGAGAACTGTGATAC+TGG | - | tig0025690:15823-15842 | Msa1424380:CDS | 30.0% | |
| !! | ATGGTTCTGAACTTTGATAA+AGG | - | tig0025690:15890-15909 | Msa1424380:CDS | 30.0% |
| !! | TAAAGTGTTGCAAATAAAGC+AGG | + | tig0025690:16151-16170 | None:intergenic | 30.0% |
| AATTTAGAGAACTGTGATAC+TGG | - | tig0025690:15823-15842 | Msa1424380:CDS | 30.0% | |
| !! | ATGGTTCTGAACTTTGATAA+AGG | - | tig0025690:15890-15909 | Msa1424380:CDS | 30.0% |
| !! | TAAAGTGTTGCAAATAAAGC+AGG | + | tig0025690:16151-16170 | None:intergenic | 30.0% |
| ATTCAGTTTGCATCGAAGAT+AGG | - | tig0025690:15865-15884 | Msa1424380:CDS | 35.0% | |
| TTCAGTTTGCATCGAAGATA+GGG | - | tig0025690:15866-15885 | Msa1424380:CDS | 35.0% | |
| TTGACATAGCAATAGAAAGC+AGG | + | tig0025690:16024-16043 | None:intergenic | 35.0% | |
| !! | AACACTTCGTCTCTGAAATT+AGG | + | tig0025690:16192-16211 | None:intergenic | 35.0% |
| AAGTGAGTTAGAGACTCAAA+AGG | - | tig0025690:16225-16244 | Msa1424380:CDS | 35.0% | |
| ! | TTTCAGTGCGATTGATGATT+GGG | + | tig0025690:16252-16271 | None:intergenic | 35.0% |
| !! | TTTTCAGTGCGATTGATGAT+TGG | + | tig0025690:16253-16272 | None:intergenic | 35.0% |
| !! | TTTCTGAAACAAGACTGCAA+GGG | + | tig0025690:16606-16625 | None:intergenic | 35.0% |
| !!! | TTTTCTGAAACAAGACTGCA+AGG | + | tig0025690:16607-16626 | None:intergenic | 35.0% |
| !! | TGCAGTCTTGTTTCAGAAAA+TGG | - | tig0025690:16607-16626 | Msa1424380:CDS | 35.0% |
| !! | GCAGTCTTGTTTCAGAAAAT+GGG | - | tig0025690:16608-16627 | Msa1424380:CDS | 35.0% |
| !! | CAGTCTTGTTTCAGAAAATG+GGG | - | tig0025690:16609-16628 | Msa1424380:CDS | 35.0% |
| ATTCAGTTTGCATCGAAGAT+AGG | - | tig0025690:15865-15884 | Msa1424380:CDS | 35.0% | |
| TTCAGTTTGCATCGAAGATA+GGG | - | tig0025690:15866-15885 | Msa1424380:CDS | 35.0% | |
| TTGACATAGCAATAGAAAGC+AGG | + | tig0025690:16024-16043 | None:intergenic | 35.0% | |
| !! | AACACTTCGTCTCTGAAATT+AGG | + | tig0025690:16192-16211 | None:intergenic | 35.0% |
| AAGTGAGTTAGAGACTCAAA+AGG | - | tig0025690:16225-16244 | Msa1424380:CDS | 35.0% | |
| ! | TTTCAGTGCGATTGATGATT+GGG | + | tig0025690:16252-16271 | None:intergenic | 35.0% |
| !! | TTTTCAGTGCGATTGATGAT+TGG | + | tig0025690:16253-16272 | None:intergenic | 35.0% |
| !! | TTTCTGAAACAAGACTGCAA+GGG | + | tig0025690:16606-16625 | None:intergenic | 35.0% |
| !!! | TTTTCTGAAACAAGACTGCA+AGG | + | tig0025690:16607-16626 | None:intergenic | 35.0% |
| !! | TGCAGTCTTGTTTCAGAAAA+TGG | - | tig0025690:16607-16626 | Msa1424380:CDS | 35.0% |
| !! | GCAGTCTTGTTTCAGAAAAT+GGG | - | tig0025690:16608-16627 | Msa1424380:CDS | 35.0% |
| !! | CAGTCTTGTTTCAGAAAATG+GGG | - | tig0025690:16609-16628 | Msa1424380:CDS | 35.0% |
| TTTGCATCGAAGATAGGGAA+TGG | - | tig0025690:15871-15890 | Msa1424380:CDS | 40.0% | |
| AATCACAAGTTAGTAGCAGC+TGG | + | tig0025690:15990-16009 | None:intergenic | 40.0% | |
| TTGAGTCTCTAACTCACTTC+TGG | + | tig0025690:16224-16243 | None:intergenic | 40.0% | |
| CACTGAAAATACCAGTACTG+AGG | - | tig0025690:16264-16283 | Msa1424380:intron | 40.0% | |
| !! | TTGAAGTGATGGTGTTGCAA+GGG | + | tig0025690:16372-16391 | None:intergenic | 40.0% |
| !! | TTGAAGTGATGGTGTTGCAA+GGG | + | tig0025690:16372-16391 | None:intergenic | 40.0% |
| !! | TTGAAGTGATGGTGTTGCAT+GGG | + | tig0025690:16438-16457 | None:intergenic | 40.0% |
| !! | TTGAAGTGATGGTGTTGCAT+GGG | + | tig0025690:16438-16457 | None:intergenic | 40.0% |
| TTGAAGTGATGGCATTGCAA+GGG | + | tig0025690:16504-16523 | None:intergenic | 40.0% | |
| TTGAAGTGATGGCATTGCAA+GGG | + | tig0025690:16504-16523 | None:intergenic | 40.0% | |
| !! | CAAAGGTGTTGTTGAAGTGA+CGG | + | tig0025690:16581-16600 | None:intergenic | 40.0% |
| AAATGGGGAAATTAAGCCGA+AGG | - | tig0025690:16624-16643 | Msa1424380:CDS | 40.0% | |
| TTTGCATCGAAGATAGGGAA+TGG | - | tig0025690:15871-15890 | Msa1424380:CDS | 40.0% | |
| AATCACAAGTTAGTAGCAGC+TGG | + | tig0025690:15990-16009 | None:intergenic | 40.0% | |
| TTGAGTCTCTAACTCACTTC+TGG | + | tig0025690:16224-16243 | None:intergenic | 40.0% | |
| CACTGAAAATACCAGTACTG+AGG | - | tig0025690:16264-16283 | Msa1424380:intron | 40.0% | |
| !! | TTGAAGTGATGGTGTTGCAA+GGG | + | tig0025690:16372-16391 | None:intergenic | 40.0% |
| !! | TTGAAGTGATGGTGTTGCAA+GGG | + | tig0025690:16372-16391 | None:intergenic | 40.0% |
| !! | TTGAAGTGATGGTGTTGCAT+GGG | + | tig0025690:16438-16457 | None:intergenic | 40.0% |
| !! | TTGAAGTGATGGTGTTGCAT+GGG | + | tig0025690:16438-16457 | None:intergenic | 40.0% |
| TTGAAGTGATGGCATTGCAA+GGG | + | tig0025690:16504-16523 | None:intergenic | 40.0% | |
| TTGAAGTGATGGCATTGCAA+GGG | + | tig0025690:16504-16523 | None:intergenic | 40.0% | |
| !! | CAAAGGTGTTGTTGAAGTGA+CGG | + | tig0025690:16581-16600 | None:intergenic | 40.0% |
| AAATGGGGAAATTAAGCCGA+AGG | - | tig0025690:16624-16643 | Msa1424380:CDS | 40.0% | |
| GCGAATTACAGCAGATCTCA+TGG | - | tig0025690:15933-15952 | Msa1424380:CDS | 45.0% | |
| GGATCCACCTGTAATAACGT+CGG | - | tig0025690:16307-16326 | Msa1424380:intron | 45.0% | |
| TTTGCCGACGTTATTACAGG+TGG | + | tig0025690:16314-16333 | None:intergenic | 45.0% | |
| TGCTTTGCCGACGTTATTAC+AGG | + | tig0025690:16317-16336 | None:intergenic | 45.0% | |
| AATAACGTCGGCAAAGCAGT+TGG | - | tig0025690:16319-16338 | Msa1424380:intron | 45.0% | |
| !! | GTTGAAGTGATGGTGTTGCA+AGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTA+TGG | - | tig0025690:16378-16397 | Msa1424380:intron | 45.0% | |
| !! | GACCATAGGTGTTGAAGTGA+TGG | + | tig0025690:16383-16402 | None:intergenic | 45.0% |
| !! | GTTGAAGTGATGGTGTTGCA+AGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTT+TGG | - | tig0025690:16411-16430 | Msa1424380:intron | 45.0% | |
| !! | GACCAAAGGTGTTGAAGTGA+TGG | + | tig0025690:16416-16435 | None:intergenic | 45.0% |
| !! | GTTGAAGTGATGGTGTTGCA+TGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTT+CGG | - | tig0025690:16411-16430 | Msa1424380:intron | 45.0% | |
| !! | GTTGAAGTGATGGTGTTGCA+TGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTT+TGG | - | tig0025690:16411-16430 | Msa1424380:intron | 45.0% | |
| !! | GACCAAAGGTGTTGAAGTGA+TGG | + | tig0025690:16416-16435 | None:intergenic | 45.0% |
| GTTGAAGTGATGGCATTGCA+AGG | + | tig0025690:16505-16524 | None:intergenic | 45.0% | |
| GTTGAAGTGATGGCATTGCA+AGG | + | tig0025690:16505-16524 | None:intergenic | 45.0% | |
| !! | TTGAAGTGACGGTGTTGCAA+GGG | + | tig0025690:16570-16589 | None:intergenic | 45.0% |
| CGTCACTTCAACAACACCTT+TGG | - | tig0025690:16579-16598 | Msa1424380:CDS | 45.0% | |
| GCGAATTACAGCAGATCTCA+TGG | - | tig0025690:15933-15952 | Msa1424380:CDS | 45.0% | |
| GGATCCACCTGTAATAACGT+CGG | - | tig0025690:16307-16326 | Msa1424380:intron | 45.0% | |
| TTTGCCGACGTTATTACAGG+TGG | + | tig0025690:16314-16333 | None:intergenic | 45.0% | |
| TGCTTTGCCGACGTTATTAC+AGG | + | tig0025690:16317-16336 | None:intergenic | 45.0% | |
| AATAACGTCGGCAAAGCAGT+TGG | - | tig0025690:16319-16338 | Msa1424380:intron | 45.0% | |
| !! | GTTGAAGTGATGGTGTTGCA+AGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTA+TGG | - | tig0025690:16378-16397 | Msa1424380:intron | 45.0% | |
| !! | GACCATAGGTGTTGAAGTGA+TGG | + | tig0025690:16383-16402 | None:intergenic | 45.0% |
| !! | GTTGAAGTGATGGTGTTGCA+AGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTT+TGG | - | tig0025690:16411-16430 | Msa1424380:intron | 45.0% | |
| !! | GACCAAAGGTGTTGAAGTGA+TGG | + | tig0025690:16416-16435 | None:intergenic | 45.0% |
| !! | GTTGAAGTGATGGTGTTGCA+TGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTT+CGG | - | tig0025690:16411-16430 | Msa1424380:intron | 45.0% | |
| !! | GTTGAAGTGATGGTGTTGCA+TGG | + | tig0025690:16373-16392 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTT+TGG | - | tig0025690:16411-16430 | Msa1424380:intron | 45.0% | |
| !! | GACCAAAGGTGTTGAAGTGA+TGG | + | tig0025690:16416-16435 | None:intergenic | 45.0% |
| GTTGAAGTGATGGCATTGCA+AGG | + | tig0025690:16505-16524 | None:intergenic | 45.0% | |
| GTTGAAGTGATGGCATTGCA+AGG | + | tig0025690:16505-16524 | None:intergenic | 45.0% | |
| !! | TTGAAGTGACGGTGTTGCAA+GGG | + | tig0025690:16570-16589 | None:intergenic | 45.0% |
| CGTCACTTCAACAACACCTT+TGG | - | tig0025690:16579-16598 | Msa1424380:CDS | 45.0% | |
| CACCATCACTTCAGCACCTA+TGG | - | tig0025690:16345-16364 | Msa1424380:intron | 50.0% | |
| !! | GACCATAGGTGCTGAAGTGA+TGG | + | tig0025690:16350-16369 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCAAGGGACCAT+AGG | + | tig0025690:16364-16383 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCAAGGGACCAT+AGG | + | tig0025690:16364-16383 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCATGGGACCAA+AGG | + | tig0025690:16430-16449 | None:intergenic | 50.0% |
| !! | GACCGAAGGTGTTGAAGTGA+TGG | + | tig0025690:16449-16468 | None:intergenic | 50.0% |
| ATGGCATTGCAAGGGACCAA+AGG | + | tig0025690:16496-16515 | None:intergenic | 50.0% | |
| TGCCATCACTTCAACGCCTT+TGG | - | tig0025690:16510-16529 | Msa1424380:intron | 50.0% | |
| !! | GACCAAAGGCGTTGAAGTGA+TGG | + | tig0025690:16515-16534 | None:intergenic | 50.0% |
| ATGGCATTGCAAGGGACCAA+AGG | + | tig0025690:16496-16515 | None:intergenic | 50.0% | |
| TGCCATCACTTCAACGCCTT+TGG | - | tig0025690:16510-16529 | Msa1424380:intron | 50.0% | |
| !! | GACCAAAGGCGTTGAAGTGA+TGG | + | tig0025690:16515-16534 | None:intergenic | 50.0% |
| !! | GTTGAAGTGACGGTGTTGCA+AGG | + | tig0025690:16571-16590 | None:intergenic | 50.0% |
| ACAAGACTGCAAGGGACCAA+AGG | + | tig0025690:16598-16617 | None:intergenic | 50.0% | |
| CACCATCACTTCAGCACCTA+TGG | - | tig0025690:16345-16364 | Msa1424380:intron | 50.0% | |
| !! | GACCATAGGTGCTGAAGTGA+TGG | + | tig0025690:16350-16369 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCAAGGGACCAT+AGG | + | tig0025690:16364-16383 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCAAGGGACCAT+AGG | + | tig0025690:16364-16383 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCATGGGACCAA+AGG | + | tig0025690:16430-16449 | None:intergenic | 50.0% |
| !! | GACCGAAGGTGTTGAAGTGA+TGG | + | tig0025690:16449-16468 | None:intergenic | 50.0% |
| ATGGCATTGCAAGGGACCAA+AGG | + | tig0025690:16496-16515 | None:intergenic | 50.0% | |
| TGCCATCACTTCAACGCCTT+TGG | - | tig0025690:16510-16529 | Msa1424380:intron | 50.0% | |
| !! | GACCAAAGGCGTTGAAGTGA+TGG | + | tig0025690:16515-16534 | None:intergenic | 50.0% |
| ATGGCATTGCAAGGGACCAA+AGG | + | tig0025690:16496-16515 | None:intergenic | 50.0% | |
| TGCCATCACTTCAACGCCTT+TGG | - | tig0025690:16510-16529 | Msa1424380:intron | 50.0% | |
| !! | GACCAAAGGCGTTGAAGTGA+TGG | + | tig0025690:16515-16534 | None:intergenic | 50.0% |
| !! | GTTGAAGTGACGGTGTTGCA+AGG | + | tig0025690:16571-16590 | None:intergenic | 50.0% |
| ACAAGACTGCAAGGGACCAA+AGG | + | tig0025690:16598-16617 | None:intergenic | 50.0% | |
| !! | ATGGTGTTGCATGGGACCGA+AGG | + | tig0025690:16463-16482 | None:intergenic | 55.0% |
| !! | ACGGTGTTGCAAGGGACCAA+AGG | + | tig0025690:16562-16581 | None:intergenic | 55.0% |
| !! | ATGGTGTTGCATGGGACCGA+AGG | + | tig0025690:16463-16482 | None:intergenic | 55.0% |
| !! | ACGGTGTTGCAAGGGACCAA+AGG | + | tig0025690:16562-16581 | None:intergenic | 55.0% |
| CTGTTGCGCTGCCTCAGTAC+TGG | + | tig0025690:16278-16297 | None:intergenic | 60.0% | |
| ACTGAGGCAGCGCAACAGCA+AGG | - | tig0025690:16280-16299 | Msa1424380:intron | 60.0% | |
| GCAGCGCAACAGCAAGGACT+GGG | - | tig0025690:16286-16305 | Msa1424380:intron | 60.0% | |
| CTGTTGCGCTGCCTCAGTAC+TGG | + | tig0025690:16278-16297 | None:intergenic | 60.0% | |
| ACTGAGGCAGCGCAACAGCA+AGG | - | tig0025690:16280-16299 | Msa1424380:intron | 60.0% | |
| GCAGCGCAACAGCAAGGACT+GGG | - | tig0025690:16286-16305 | Msa1424380:intron | 60.0% | |
| GGCAGCGCAACAGCAAGGAC+TGG | - | tig0025690:16285-16304 | Msa1424380:intron | 65.0% | |
| GGCAGCGCAACAGCAAGGAC+TGG | - | tig0025690:16285-16304 | Msa1424380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025690 | gene | 15808 | 16657 | 15808 | ID=Msa1424380;Name=Msa1424380 |
| tig0025690 | mRNA | 15808 | 16657 | 15808 | ID=Msa1424380-mRNA-1;Parent=Msa1424380;Name=Msa1424380-mRNA-1;_AED=0.50;_eAED=0.64;_QI=0|0|0|0.5|0|0|2|0|180 |
| tig0025690 | exon | 16573 | 16657 | 16573 | ID=Msa1424380-mRNA-1:exon:3785;Parent=Msa1424380-mRNA-1 |
| tig0025690 | exon | 15808 | 16265 | 15808 | ID=Msa1424380-mRNA-1:exon:3784;Parent=Msa1424380-mRNA-1 |
| tig0025690 | CDS | 16573 | 16657 | 16573 | ID=Msa1424380-mRNA-1:cds;Parent=Msa1424380-mRNA-1 |
| tig0025690 | CDS | 15808 | 16265 | 15808 | ID=Msa1424380-mRNA-1:cds;Parent=Msa1424380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
