Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0576530 | AET05254.2 | 97.699 | 478 | 11 | 0 | 1 | 478 | 1 | 478 | 0.0 | 967 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0576530 | sp|Q9SZD1|TCX5_ARATH | 65.714 | 420 | 131 | 7 | 61 | 475 | 109 | 520 | 0.0 | 536 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0576530 | G7L886 | 97.699 | 478 | 11 | 0 | 1 | 478 | 1 | 478 | 0.0 | 967 |
Gene ID | Type | Classification |
---|---|---|
Msa0576530 | TF | CPP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0370160 | Msa0576530 | 0.819561 | 1.088523e-52 | -8.615850e-47 |
Msa0437690 | Msa0576530 | 0.804333 | 2.271465e-49 | -8.615850e-47 |
Msa0509950 | Msa0576530 | 0.803118 | 4.060681e-49 | -8.615850e-47 |
Msa0576520 | Msa0576530 | 0.802098 | 6.591898e-49 | -8.615850e-47 |
Msa0576530 | Msa1424380 | 0.827347 | 1.644732e-54 | -8.615850e-47 |
Msa0576530 | Msa1424390 | 0.939392 | 1.372227e-99 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0576530 | MtrunA17_Chr8g0390351 | 97.689 | 476 | 11 | 0 | 1 | 476 | 1 | 476 | 0.0 | 966 |
Msa0576530 | MtrunA17_Chr6g0485811 | 67.429 | 525 | 119 | 9 | 1 | 476 | 1 | 522 | 0.0 | 674 |
Msa0576530 | MtrunA17_Chr3g0139951 | 48.845 | 303 | 146 | 4 | 36 | 334 | 101 | 398 | 6.04e-85 | 267 |
Msa0576530 | MtrunA17_Chr1g0149101 | 45.000 | 140 | 73 | 3 | 83 | 218 | 498 | 637 | 9.27e-30 | 123 |
Msa0576530 | MtrunA17_Chr5g0394661 | 44.615 | 130 | 71 | 1 | 83 | 211 | 488 | 617 | 1.30e-29 | 122 |
Msa0576530 | MtrunA17_Chr1g0205031 | 32.812 | 128 | 85 | 1 | 85 | 211 | 407 | 534 | 2.18e-15 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0576530 | AT4G29000.1 | 65.714 | 420 | 131 | 7 | 61 | 475 | 109 | 520 | 0.0 | 536 |
Msa0576530 | AT2G20110.3 | 53.216 | 513 | 163 | 13 | 1 | 475 | 1 | 474 | 2.23e-171 | 493 |
Msa0576530 | AT2G20110.1 | 53.216 | 513 | 163 | 13 | 1 | 475 | 1 | 474 | 2.72e-171 | 494 |
Msa0576530 | AT2G20110.2 | 53.216 | 513 | 163 | 13 | 1 | 475 | 1 | 474 | 4.44e-171 | 494 |
Msa0576530 | AT5G25790.1 | 42.793 | 444 | 199 | 11 | 47 | 478 | 50 | 450 | 3.53e-106 | 324 |
Msa0576530 | AT5G25790.2 | 42.664 | 443 | 199 | 11 | 47 | 477 | 50 | 449 | 1.91e-105 | 323 |
Msa0576530 | AT5G25790.3 | 42.411 | 448 | 191 | 13 | 47 | 478 | 50 | 446 | 1.31e-103 | 317 |
Msa0576530 | AT3G16160.1 | 31.291 | 457 | 193 | 14 | 24 | 470 | 17 | 362 | 2.08e-42 | 154 |
Msa0576530 | AT3G22760.2 | 44.172 | 163 | 82 | 5 | 61 | 219 | 184 | 341 | 1.68e-34 | 135 |
Msa0576530 | AT3G22760.1 | 44.172 | 163 | 82 | 5 | 61 | 219 | 307 | 464 | 3.05e-34 | 136 |
Msa0576530 | AT4G14770.1 | 44.776 | 134 | 67 | 3 | 83 | 212 | 375 | 505 | 2.05e-32 | 131 |
Msa0576530 | AT4G14770.2 | 44.776 | 134 | 67 | 3 | 83 | 212 | 355 | 485 | 2.50e-32 | 130 |
Msa0576530 | AT4G14770.3 | 44.776 | 134 | 67 | 3 | 83 | 212 | 356 | 486 | 2.61e-32 | 130 |
Msa0576530 | AT3G22780.1 | 43.704 | 135 | 69 | 3 | 83 | 213 | 401 | 532 | 1.73e-31 | 128 |
Msa0576530 | AT3G04850.1 | 45.736 | 129 | 69 | 1 | 83 | 210 | 453 | 581 | 4.93e-31 | 127 |
Find 115 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTTTGATTTAGGAGATTC+TGG | 0.202009 | 4_1:+80596297 | None:intergenic |
TAACAATAATCACAACAATT+AGG | 0.206360 | 4_1:+80596961 | None:intergenic |
TTGGGTCTTGACTTTGATTT+AGG | 0.219084 | 4_1:+80596288 | None:intergenic |
TCTTAATAGGGTTATCACTA+TGG | 0.229357 | 4_1:-80592323 | Msa0576530:CDS |
GGAGACATTGGCCTCCCTTT+TGG | 0.278244 | 4_1:+80592520 | None:intergenic |
TCTCCCCATCAGCTTCCTTT+TGG | 0.283654 | 4_1:+80592626 | None:intergenic |
GGAAGTGTCGGCGGTGGTTG+TGG | 0.289843 | 4_1:+80596743 | None:intergenic |
CAGCTCGATTTCAACGCTTT+TGG | 0.295923 | 4_1:-80596800 | Msa0576530:CDS |
GATCATGCGGTTGTGGATTA+AGG | 0.296996 | 4_1:+80597186 | None:intergenic |
ACATCTTCACAATTGCCTTA+TGG | 0.308433 | 4_1:-80592409 | Msa0576530:CDS |
GCAGCCAATGCTGCTATAAC+TGG | 0.312657 | 4_1:-80594989 | Msa0576530:CDS |
ATCACTATGGGCGAAATAAA+TGG | 0.314147 | 4_1:-80592310 | Msa0576530:CDS |
GAAGTGTCGGCGGTGGTTGT+GGG | 0.336832 | 4_1:+80596744 | None:intergenic |
CGGAACTCTGGCCGTCCATC+AGG | 0.341120 | 4_1:-80594910 | Msa0576530:CDS |
AACAATAATCACAACAATTA+GGG | 0.349273 | 4_1:+80596962 | None:intergenic |
GGCGGTGGTTGTGGGTGTTC+CGG | 0.362076 | 4_1:+80596752 | None:intergenic |
CGTGTTGGACCTTCAACATT+AGG | 0.374824 | 4_1:-80593885 | Msa0576530:CDS |
GCTGCTATAACTGGAGCTAT+TGG | 0.378616 | 4_1:-80594980 | Msa0576530:CDS |
TCCGGCAGAGGTGCAGTTAC+CGG | 0.392618 | 4_1:+80596770 | None:intergenic |
AAACAGAGCAAAGCTCCTTC+AGG | 0.392877 | 4_1:+80593721 | None:intergenic |
TCTTTCGTTCCTTGTCCATA+AGG | 0.397871 | 4_1:+80592394 | None:intergenic |
TGGAGATCAAAACAACAATA+TGG | 0.398327 | 4_1:-80595026 | Msa0576530:CDS |
CACATCAATGCTAAAGTTCC+AGG | 0.399973 | 4_1:+80592499 | None:intergenic |
CTGCCTAGCAAGCTTCTTAA+CGG | 0.406846 | 4_1:+80596820 | None:intergenic |
GAAGGTCCAACACGAGGTAC+TGG | 0.411988 | 4_1:+80593894 | None:intergenic |
AACGCAATCCAAATGCCTTT+AGG | 0.412558 | 4_1:-80595980 | Msa0576530:CDS |
ACTGGAGCTATTGGTTCCTC+TGG | 0.415396 | 4_1:-80594971 | Msa0576530:CDS |
TCCATCAGGGATCCATCGTT+TGG | 0.418364 | 4_1:-80594896 | Msa0576530:CDS |
CCTCTTCCTGCACCCAAAGT+GGG | 0.422177 | 4_1:-80596719 | Msa0576530:CDS |
AAAGAAAAGGTTCGGAACTC+TGG | 0.425606 | 4_1:-80594922 | Msa0576530:CDS |
TTTGAAGGGCCTAATGTTGA+AGG | 0.430598 | 4_1:+80593876 | None:intergenic |
GCCCTTCAAAATTTATGTAC+AGG | 0.435578 | 4_1:-80593863 | Msa0576530:intron |
CTTAATAGGGTTATCACTAT+GGG | 0.444084 | 4_1:-80592322 | Msa0576530:CDS |
CAGAACAAAGAATGTTGGCT+TGG | 0.445420 | 4_1:+80595113 | None:intergenic |
CCTAAGACTGACCCCACTTT+GGG | 0.446599 | 4_1:+80596707 | None:intergenic |
GCCTAAGACTGACCCCACTT+TGG | 0.446742 | 4_1:+80596706 | None:intergenic |
AACATCAGCACCATCTGAAC+TGG | 0.452271 | 4_1:+80592543 | None:intergenic |
TTCAAAAGCTCGTGAGAGAG+AGG | 0.456935 | 4_1:-80597116 | Msa0576530:five_prime_UTR |
TGGATTAAGGTTCTCATCGT+AGG | 0.457054 | 4_1:+80597199 | None:intergenic |
AAAGGGAGGCCAATGTCTCC+TGG | 0.459213 | 4_1:-80592517 | Msa0576530:CDS |
GAGCGACAGGCTTTGTTCCA+TGG | 0.463378 | 4_1:-80595046 | Msa0576530:CDS |
GCCGGTAACTGCACCTCTGC+CGG | 0.463775 | 4_1:-80596771 | Msa0576530:CDS |
CCCACTTTGGGTGCAGGAAG+AGG | 0.467373 | 4_1:+80596719 | None:intergenic |
TGGTAATTGCTCTTGATTTG+AGG | 0.468628 | 4_1:+80592651 | None:intergenic |
TGAGCCATCGACGCAGTTGA+GGG | 0.478336 | 4_1:+80592442 | None:intergenic |
AGCTCCAGTTATAGCAGCAT+TGG | 0.488511 | 4_1:+80594985 | None:intergenic |
GATGGTGCTGATGTTCCAAA+AGG | 0.490293 | 4_1:-80592535 | Msa0576530:CDS |
GTTTGGAAAGCTAGGACAAC+AGG | 0.490764 | 4_1:-80594879 | Msa0576530:intron |
AAAGATGAAGAGGGTGCTGC+AGG | 0.491726 | 4_1:+80593927 | None:intergenic |
GGTTGTGGGTGTTCCGGCAG+AGG | 0.497560 | 4_1:+80596758 | None:intergenic |
TCCTCTTCCTGCACCCAAAG+TGG | 0.499712 | 4_1:-80596720 | Msa0576530:CDS |
CGATCGAATGGGTGAAGGTG+AGG | 0.502201 | 4_1:-80596879 | Msa0576530:exon |
TTCTGAAAACTGTAAATGCA+TGG | 0.504558 | 4_1:-80595095 | Msa0576530:CDS |
ACTGACCCCACTTTGGGTGC+AGG | 0.507298 | 4_1:+80596713 | None:intergenic |
ATATAAATGTAGGAGGAGAC+TGG | 0.511871 | 4_1:-80595217 | Msa0576530:intron |
TGAAGGAAGTGAAGAGCGAC+AGG | 0.515256 | 4_1:-80595059 | Msa0576530:CDS |
GACTGGGGAAGTTAAAGTAT+TGG | 0.517867 | 4_1:-80595200 | Msa0576530:CDS |
ATGAGCCATCGACGCAGTTG+AGG | 0.519656 | 4_1:+80592441 | None:intergenic |
TCAGTTTGATCATGCGGTTG+TGG | 0.520381 | 4_1:+80597179 | None:intergenic |
GATCGAATGGGTGAAGGTGA+GGG | 0.528000 | 4_1:-80596878 | Msa0576530:exon |
AGAGCAATTACCAAACCAAA+AGG | 0.531316 | 4_1:-80592641 | Msa0576530:CDS |
GCGTTCTAAAGTTGCCTCAA+CGG | 0.532916 | 4_1:+80595998 | None:intergenic |
GGTGCTGCAGGACCTCTGAC+AGG | 0.533479 | 4_1:+80593939 | None:intergenic |
GCAGGAAGAGGAGGAAGTGT+CGG | 0.537059 | 4_1:+80596731 | None:intergenic |
CTCTTCCTGCACCCAAAGTG+GGG | 0.540427 | 4_1:-80596718 | Msa0576530:intron |
GGAACTCTGGCCGTCCATCA+GGG | 0.541188 | 4_1:-80594909 | Msa0576530:CDS |
AGATCTATGCAGAGCAAGAG+AGG | 0.541580 | 4_1:-80592372 | Msa0576530:CDS |
CAATATGGCGTATCTTCAGC+AGG | 0.547825 | 4_1:-80595011 | Msa0576530:CDS |
GGATTAAGGTTCTCATCGTA+GGG | 0.550297 | 4_1:+80597200 | None:intergenic |
GCTAAAGTTCCAGGAGACAT+TGG | 0.554665 | 4_1:+80592508 | None:intergenic |
CCTGTCCCAGTACCTCGTGT+TGG | 0.556568 | 4_1:-80593900 | Msa0576530:CDS |
AAAATTGCGAGCAGTCCTCA+TGG | 0.561710 | 4_1:-80595954 | Msa0576530:CDS |
TGGGGCGATCGAATGGGTGA+AGG | 0.561905 | 4_1:-80596884 | Msa0576530:exon |
TAACAATGTTGACAATGAAG+CGG | 0.562048 | 4_1:-80596033 | Msa0576530:CDS |
CCTGAAAATTCCAGTTCAGA+TGG | 0.562427 | 4_1:-80592553 | Msa0576530:CDS |
TATAAATGTAGGAGGAGACT+GGG | 0.563902 | 4_1:-80595216 | Msa0576530:intron |
GATCCATCGTTTGGAAAGCT+AGG | 0.564234 | 4_1:-80594887 | Msa0576530:CDS |
CCAACACGAGGTACTGGGAC+AGG | 0.566645 | 4_1:+80593900 | None:intergenic |
CAAACCAAAAGGAAGCTGAT+GGG | 0.567376 | 4_1:-80592630 | Msa0576530:CDS |
ATTCCGTTAAGAAGCTTGCT+AGG | 0.570445 | 4_1:-80596823 | Msa0576530:CDS |
CCAAACCAAAAGGAAGCTGA+TGG | 0.575383 | 4_1:-80592631 | Msa0576530:CDS |
CAAAGCTCCTTCAGGTGCTG+TGG | 0.576488 | 4_1:+80593729 | None:intergenic |
AGAGGAGGAAGTGTCGGCGG+TGG | 0.576611 | 4_1:+80596737 | None:intergenic |
TCACAATTGCCTTATGGACA+AGG | 0.579807 | 4_1:-80592403 | Msa0576530:CDS |
TTTAGTGCTAGTATCTGGAC+AGG | 0.580606 | 4_1:-80593700 | Msa0576530:CDS |
TCCAAACGATGGATCCCTGA+TGG | 0.585261 | 4_1:+80594895 | None:intergenic |
TAGATAAGCACACAGAAGAT+CGG | 0.590669 | 4_1:-80592693 | Msa0576530:CDS |
AGCCATCGACGCAGTTGAGG+GGG | 0.590783 | 4_1:+80592444 | None:intergenic |
GACAGGAGACAAAGATGAAG+AGG | 0.594341 | 4_1:+80593917 | None:intergenic |
AAGGTCCAACACGAGGTACT+GGG | 0.595130 | 4_1:+80593895 | None:intergenic |
AACGATGGATCCCTGATGGA+CGG | 0.596545 | 4_1:+80594899 | None:intergenic |
ATGGTGCTGATGTTCCAAAA+GGG | 0.600938 | 4_1:-80592534 | Msa0576530:CDS |
GAGCCATCGACGCAGTTGAG+GGG | 0.602668 | 4_1:+80592443 | None:intergenic |
TGTCCTAGCTTTCCAAACGA+TGG | 0.604497 | 4_1:+80594884 | None:intergenic |
AAACCAAAAGGAAGCTGATG+GGG | 0.605517 | 4_1:-80592629 | Msa0576530:CDS |
AGTATTGGTAAAGCACAACA+AGG | 0.610516 | 4_1:-80595185 | Msa0576530:CDS |
AACATTCACAGTACTTCTTG+AGG | 0.610779 | 4_1:+80595137 | None:intergenic |
TCATGGAACACGTGATAACA+AGG | 0.615546 | 4_1:-80595937 | Msa0576530:intron |
TCAAAAGCTCGTGAGAGAGA+GGG | 0.617804 | 4_1:-80597115 | Msa0576530:five_prime_UTR |
GTATTGGTAAAGCACAACAA+GGG | 0.619872 | 4_1:-80595184 | Msa0576530:CDS |
ACTTTGGGTGCAGGAAGAGG+AGG | 0.619897 | 4_1:+80596722 | None:intergenic |
AAAGCTCGTGAGAGAGAGGG+AGG | 0.625447 | 4_1:-80597112 | Msa0576530:five_prime_UTR |
GCGTCGGGGATATATTGCGA+TGG | 0.627790 | 4_1:-80596077 | Msa0576530:CDS |
GGCAAGACGAGAAGCCGTTG+AGG | 0.638829 | 4_1:-80596012 | Msa0576530:CDS |
CATACAACCACAGCACCTGA+AGG | 0.646661 | 4_1:-80593736 | Msa0576530:CDS |
ACAGGAGACAAAGATGAAGA+GGG | 0.650680 | 4_1:+80593918 | None:intergenic |
GGAAGAGGAGGAAGTGTCGG+CGG | 0.650685 | 4_1:+80596734 | None:intergenic |
TATCAGGCAAATCCTGTCAG+AGG | 0.651141 | 4_1:-80593951 | Msa0576530:intron |
TATTGGTAAAGCACAACAAG+GGG | 0.652902 | 4_1:-80595183 | Msa0576530:CDS |
GTGCTGATGTTCCAAAAGGG+AGG | 0.653307 | 4_1:-80592531 | Msa0576530:CDS |
AGCTGATGGGGAGAAAGTTG+TGG | 0.668913 | 4_1:-80592617 | Msa0576530:CDS |
TTGTTATCACGTGTTCCATG+AGG | 0.679705 | 4_1:+80595939 | None:intergenic |
AATGTTGAAGGTCCAACACG+AGG | 0.707406 | 4_1:+80593888 | None:intergenic |
TGGTGGTGATGAATAACCAG+AGG | 0.718034 | 4_1:+80594955 | None:intergenic |
ATAAATGTAGGAGGAGACTG+GGG | 0.722595 | 4_1:-80595215 | Msa0576530:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTTTGTAAATTTTCTA+CGG | + | chr4_1:80592373-80592392 | None:intergenic | 10.0% |
!! | AACAAAAAATTAATATATGT+GGG | + | chr4_1:80593886-80593905 | None:intergenic | 10.0% |
!!! | TCAAATAAAGTTGATTTATT+TGG | - | chr4_1:80593756-80593775 | Msa0576530:CDS | 15.0% |
!! | ACAAAAAATTAATATATGTG+GGG | + | chr4_1:80593885-80593904 | None:intergenic | 15.0% |
!! | GAACAAAAAATTAATATATG+TGG | + | chr4_1:80593887-80593906 | None:intergenic | 15.0% |
!! | AAAAGGAAAAAATGTAAATA+AGG | + | chr4_1:80593959-80593978 | None:intergenic | 15.0% |
!!! | ATTACTTCATTTTAAATTGT+GGG | + | chr4_1:80594026-80594045 | None:intergenic | 15.0% |
!!! | AATTACTTCATTTTAAATTG+TGG | + | chr4_1:80594027-80594046 | None:intergenic | 15.0% |
!!! | TTTTTATTCTTATGTTTCTA+TGG | - | chr4_1:80594267-80594286 | Msa0576530:intron | 15.0% |
!!! | TATTTTTTTTTACTCCTAAT+GGG | + | chr4_1:80594778-80594797 | None:intergenic | 15.0% |
!!! | ATATTTTTTTTTACTCCTAA+TGG | + | chr4_1:80594779-80594798 | None:intergenic | 15.0% |
!!! | TGTTTTATATGAAGAAAATA+TGG | + | chr4_1:80595302-80595321 | None:intergenic | 15.0% |
!! | TCTTATTATAATTGAATGAA+TGG | - | chr4_1:80595336-80595355 | Msa0576530:intron | 15.0% |
!!! | TCAAAATCAAAATATGTTTT+AGG | + | chr4_1:80596500-80596519 | None:intergenic | 15.0% |
!! | AACAATAATCACAACAATTA+GGG | + | chr4_1:80592554-80592573 | None:intergenic | 20.0% |
!! | TAACAATAATCACAACAATT+AGG | + | chr4_1:80592555-80592574 | None:intergenic | 20.0% |
!!! | TTTTTTGTGTGTTGAATTTT+TGG | - | chr4_1:80592609-80592628 | Msa0576530:CDS | 20.0% |
!!! | TTTTTGTGTGTTGAATTTTT+GGG | - | chr4_1:80592610-80592629 | Msa0576530:CDS | 20.0% |
!! | AAATTGAGATTCTTGTTAAT+AGG | - | chr4_1:80593057-80593076 | Msa0576530:intron | 20.0% |
!! | AATTGAGATTCTTGTTAATA+GGG | - | chr4_1:80593058-80593077 | Msa0576530:intron | 20.0% |
!! | TAATTAAGCACTTCAAAAAA+AGG | + | chr4_1:80593175-80593194 | None:intergenic | 20.0% |
!! | AATTAGTGTTTATTTGATTC+AGG | - | chr4_1:80593190-80593209 | Msa0576530:intron | 20.0% |
!! | AAAATGCATCAAACAAAATT+TGG | + | chr4_1:80593783-80593802 | None:intergenic | 20.0% |
!! | AAAAAATTAATATATGTGGG+GGG | + | chr4_1:80593883-80593902 | None:intergenic | 20.0% |
!! | CAAAAAATTAATATATGTGG+GGG | + | chr4_1:80593884-80593903 | None:intergenic | 20.0% |
!! | AAGCAAAAAAAAATTAAAGC+CGG | - | chr4_1:80594179-80594198 | Msa0576530:intron | 20.0% |
!!! | ATTTTTTTTTACTCCTAATG+GGG | + | chr4_1:80594777-80594796 | None:intergenic | 20.0% |
!!! | TATTTTTTTTCATGCTTATC+AGG | - | chr4_1:80595546-80595565 | Msa0576530:intron | 20.0% |
!!! | AAAATTTCTTGAGATTTGTT+TGG | + | chr4_1:80596055-80596074 | None:intergenic | 20.0% |
!!! | AACATATTTTGATTTTGAAG+TGG | - | chr4_1:80596502-80596521 | Msa0576530:intron | 20.0% |
!!! | TGTATTCTTTTGAAGTTTTT+GGG | - | chr4_1:80596702-80596721 | Msa0576530:intron | 20.0% |
!! | ATTAAACATGAGTTTGATAT+TGG | + | chr4_1:80596777-80596796 | None:intergenic | 20.0% |
!!! | GCTTATCTATTAAATTTTTC+TGG | + | chr4_1:80596809-80596828 | None:intergenic | 20.0% |
!!! | AATTCAGAGATTTTCTTAAT+AGG | - | chr4_1:80597177-80597196 | Msa0576530:five_prime_UTR | 20.0% |
!!! | ATTCAGAGATTTTCTTAATA+GGG | - | chr4_1:80597178-80597197 | Msa0576530:five_prime_UTR | 20.0% |
!! | TTTTGTAAATTTTCTACGGT+TGG | + | chr4_1:80592369-80592388 | None:intergenic | 25.0% |
!! | TTTTGTGTGTTGAATTTTTG+GGG | - | chr4_1:80592611-80592630 | Msa0576530:CDS | 25.0% |
!!! | TATTGGTTCAAATTTGATGA+TGG | - | chr4_1:80593099-80593118 | Msa0576530:intron | 25.0% |
!!! | GTTGTGAATTTTTTGTATTG+AGG | - | chr4_1:80593641-80593660 | Msa0576530:intron | 25.0% |
!!! | GATTTGCTTATATTTTGTCA+CGG | + | chr4_1:80593732-80593751 | None:intergenic | 25.0% |
!! | TGCTTATATTTTGTTACAGA+AGG | - | chr4_1:80593803-80593822 | Msa0576530:intron | 25.0% |
!!! | TACTTTGTTTTAGTTCATTG+AGG | - | chr4_1:80593837-80593856 | Msa0576530:intron | 25.0% |
!! | ATTGAGGATTTTTGTTGATA+AGG | - | chr4_1:80593853-80593872 | Msa0576530:intron | 25.0% |
!!! | TTGAGGATTTTTGTTGATAA+GGG | - | chr4_1:80593854-80593873 | Msa0576530:intron | 25.0% |
!! | TTTTTCCTTTTATTAGAAGC+AGG | - | chr4_1:80593968-80593987 | Msa0576530:intron | 25.0% |
! | TTTACAAGTATCTTAACAAC+AGG | + | chr4_1:80594144-80594163 | None:intergenic | 25.0% |
! | ATGGACTTCAATATAAATGT+AGG | - | chr4_1:80594286-80594305 | Msa0576530:intron | 25.0% |
!!! | ATTTTGGAAATTAGGTAAAC+TGG | - | chr4_1:80594693-80594712 | Msa0576530:intron | 25.0% |
!!! | TTTTGGAAATTAGGTAAACT+GGG | - | chr4_1:80594694-80594713 | Msa0576530:intron | 25.0% |
! | ATGCATCTCTCAATTTAATT+GGG | + | chr4_1:80594803-80594822 | None:intergenic | 25.0% |
! | AATGCATCTCTCAATTTAAT+TGG | + | chr4_1:80594804-80594823 | None:intergenic | 25.0% |
! | AATTAGAATAGCATTTCCTT+GGG | - | chr4_1:80595126-80595145 | Msa0576530:CDS | 25.0% |
!! | ACCTGTACATAAATTTTGAA+GGG | + | chr4_1:80595654-80595673 | None:intergenic | 25.0% |
!! | TACCTGTACATAAATTTTGA+AGG | + | chr4_1:80595655-80595674 | None:intergenic | 25.0% |
! | TTCAAAATTTATGTACAGGT+AGG | - | chr4_1:80595654-80595673 | Msa0576530:intron | 25.0% |
!! | CAAATAACACAATTGATGAT+GGG | + | chr4_1:80595878-80595897 | None:intergenic | 25.0% |
! | AATAATTCTGAACCTTACTT+TGG | + | chr4_1:80596265-80596284 | None:intergenic | 25.0% |
! | AAAAGGTTGTATTTACCATT+TGG | + | chr4_1:80596405-80596424 | None:intergenic | 25.0% |
! | TTGAAGTGGAATTAATTCTA+TGG | - | chr4_1:80596516-80596535 | Msa0576530:intron | 25.0% |
!!! | GTGTATTCTTTTGAAGTTTT+TGG | - | chr4_1:80596701-80596720 | Msa0576530:intron | 25.0% |
! | CAATTGAATAGAATAATCGA+AGG | + | chr4_1:80596734-80596753 | None:intergenic | 25.0% |
! | CTTCGATTATTCTATTCAAT+TGG | - | chr4_1:80596732-80596751 | Msa0576530:CDS | 25.0% |
AAAAGCGAAGTCTAAGTTAT+TGG | - | chr4_1:80593082-80593101 | Msa0576530:intron | 30.0% | |
!!! | AATTTGATGATGGCCTTTTT+TGG | - | chr4_1:80593109-80593128 | Msa0576530:intron | 30.0% |
AGAAGAAAAGTCTCCAAAAA+AGG | + | chr4_1:80593125-80593144 | None:intergenic | 30.0% | |
! | ATATTGTGAATGTTTTGCGT+CGG | - | chr4_1:80593420-80593439 | Msa0576530:intron | 30.0% |
TAACAATGTTGACAATGAAG+CGG | - | chr4_1:80593480-80593499 | Msa0576530:intron | 30.0% | |
AAACGAAAACTAAAATGCAC+TGG | + | chr4_1:80593936-80593955 | None:intergenic | 30.0% | |
ATGTCATAATTCCATACCAT+TGG | + | chr4_1:80594113-80594132 | None:intergenic | 30.0% | |
!! | TTTTGAGTAAGCAAAAAGGA+AGG | + | chr4_1:80594231-80594250 | None:intergenic | 30.0% |
!! | GATGTTTTGAGTAAGCAAAA+AGG | + | chr4_1:80594235-80594254 | None:intergenic | 30.0% |
GACTTCAATATAAATGTAGG+AGG | - | chr4_1:80594289-80594308 | Msa0576530:intron | 30.0% | |
!! | GGTGTCATTGTAAAAAATCT+GGG | - | chr4_1:80594351-80594370 | Msa0576530:intron | 30.0% |
! | GTTTTCAGAACAAAGAATGT+TGG | + | chr4_1:80594408-80594427 | None:intergenic | 30.0% |
! | TTCTGAAAACTGTAAATGCA+TGG | - | chr4_1:80594418-80594437 | Msa0576530:intron | 30.0% |
! | ATGGATTGCAAAAACTTTGA+AGG | - | chr4_1:80594437-80594456 | Msa0576530:intron | 30.0% |
!!! | TATTGTTGTTTTGATCTCCA+TGG | + | chr4_1:80594487-80594506 | None:intergenic | 30.0% |
TGGAGATCAAAACAACAATA+TGG | - | chr4_1:80594487-80594506 | Msa0576530:intron | 30.0% | |
! | GTAAAACTTGATAATACTGC+AGG | - | chr4_1:80594656-80594675 | Msa0576530:intron | 30.0% |
!!! | AGGGGTTTATTTTGGAAATT+AGG | - | chr4_1:80594685-80594704 | Msa0576530:intron | 30.0% |
TTTGGAAATTAGGTAAACTG+GGG | - | chr4_1:80594695-80594714 | Msa0576530:intron | 30.0% | |
!! | TTGAGTTGAAATGAACACAT+TGG | + | chr4_1:80594883-80594902 | None:intergenic | 30.0% |
CAATTAGAATAGCATTTCCT+TGG | - | chr4_1:80595125-80595144 | Msa0576530:CDS | 30.0% | |
! | ACGAGAAAAGACTGAATTTT+TGG | + | chr4_1:80595256-80595275 | None:intergenic | 30.0% |
! | AAAAATTCAGTCTTTTCTCG+TGG | - | chr4_1:80595255-80595274 | Msa0576530:intron | 30.0% |
!!! | GAACTAGCAATTTAGCTTTT+GGG | + | chr4_1:80595445-80595464 | None:intergenic | 30.0% |
AATTTATGTACAGGTAGGAT+TGG | - | chr4_1:80595659-80595678 | Msa0576530:intron | 30.0% | |
! | ATTAACTTGATTGCTGTTGA+AGG | - | chr4_1:80595737-80595756 | Msa0576530:intron | 30.0% |
!! | TATACCTGTAAGTGTTTTTG+TGG | + | chr4_1:80595839-80595858 | None:intergenic | 30.0% |
CAAAAACACTTACAGGTATA+TGG | - | chr4_1:80595839-80595858 | Msa0576530:intron | 30.0% | |
GCAAATAACACAATTGATGA+TGG | + | chr4_1:80595879-80595898 | None:intergenic | 30.0% | |
!! | ATACAGTTTTGTGTTTTCGT+CGG | - | chr4_1:80595912-80595931 | Msa0576530:intron | 30.0% |
! | TGAGTGTACTGATATTGATT+TGG | - | chr4_1:80595947-80595966 | Msa0576530:CDS | 30.0% |
!! | GTACTGATATTGATTTGGAA+AGG | - | chr4_1:80595952-80595971 | Msa0576530:CDS | 30.0% |
! | TCTTGAGATTTGTTTGGAAA+GGG | + | chr4_1:80596049-80596068 | None:intergenic | 30.0% |
! | TTCTTGAGATTTGTTTGGAA+AGG | + | chr4_1:80596050-80596069 | None:intergenic | 30.0% |
TAGCAGCTTAATTTAATGAG+CGG | - | chr4_1:80596074-80596093 | Msa0576530:CDS | 30.0% | |
ACAAAATTTCAGCCAAAGTA+AGG | - | chr4_1:80596250-80596269 | Msa0576530:CDS | 30.0% | |
! | TAGGTTTACCAAACATTTTG+AGG | + | chr4_1:80596544-80596563 | None:intergenic | 30.0% |
! | GTTAAACATTGAGGTATCTT+AGG | + | chr4_1:80596632-80596651 | None:intergenic | 30.0% |
TTTCAGACAGTTAAACATTG+AGG | + | chr4_1:80596641-80596660 | None:intergenic | 30.0% | |
TCTTAATAGGGTTATCACTA+TGG | - | chr4_1:80597190-80597209 | Msa0576530:five_prime_UTR | 30.0% | |
CTTAATAGGGTTATCACTAT+GGG | - | chr4_1:80597191-80597210 | Msa0576530:five_prime_UTR | 30.0% | |
! | TCGTTTTCAGTTTGATCATG+CGG | + | chr4_1:80592343-80592362 | None:intergenic | 35.0% |
TGAGTTTCAGATCCCAAAAA+CGG | + | chr4_1:80592492-80592511 | None:intergenic | 35.0% | |
!!! | GAATCCAATTGTGCGTTTTT+TGG | + | chr4_1:80592674-80592693 | None:intergenic | 35.0% |
TTGTTGTATCATCAACTCTG+TGG | - | chr4_1:80592972-80592991 | Msa0576530:intron | 35.0% | |
AACTCTGTGGTTGAGAAATT+AGG | - | chr4_1:80592985-80593004 | Msa0576530:intron | 35.0% | |
! | GACTTTGATTTAGGAGATTC+TGG | + | chr4_1:80593219-80593238 | None:intergenic | 35.0% |
! | TTGGGTCTTGACTTTGATTT+AGG | + | chr4_1:80593228-80593247 | None:intergenic | 35.0% |
! | GCATCTTTTGTCTCAAAGTT+GGG | + | chr4_1:80593246-80593265 | None:intergenic | 35.0% |
! | AGCATCTTTTGTCTCAAAGT+TGG | + | chr4_1:80593247-80593266 | None:intergenic | 35.0% |
!!! | TTGCACTGTTTTTGCTTCTT+TGG | + | chr4_1:80593273-80593292 | None:intergenic | 35.0% |
! | TATTGTGAATGTTTTGCGTC+GGG | - | chr4_1:80593421-80593440 | Msa0576530:intron | 35.0% |
! | GCAGGCTTAACTTTTTGTAA+CGG | - | chr4_1:80593602-80593621 | Msa0576530:intron | 35.0% |
! | GCTTAACTTTTTGTAACGGT+TGG | - | chr4_1:80593606-80593625 | Msa0576530:intron | 35.0% |
! | TTATATTTTGTCACGGAGGA+GGG | + | chr4_1:80593725-80593744 | None:intergenic | 35.0% |
! | TTGCTTATATTTTGTCACGG+AGG | + | chr4_1:80593729-80593748 | None:intergenic | 35.0% |
! | TTCCTTTTATTAGAAGCAGG+AGG | - | chr4_1:80593971-80593990 | Msa0576530:intron | 35.0% |
ATCCTCCTGCTTCTAATAAA+AGG | + | chr4_1:80593976-80593995 | None:intergenic | 35.0% | |
GATGCAAATCCACTCTTATA+GGG | + | chr4_1:80594077-80594096 | None:intergenic | 35.0% | |
TGATGCAAATCCACTCTTAT+AGG | + | chr4_1:80594078-80594097 | None:intergenic | 35.0% | |
TCATAATTCCATACCATTGG+AGG | + | chr4_1:80594110-80594129 | None:intergenic | 35.0% | |
GTATGGAATTATGACATGAC+AGG | - | chr4_1:80594116-80594135 | Msa0576530:intron | 35.0% | |
! | TTTTCCAACACAAGAAATGC+CGG | + | chr4_1:80594201-80594220 | None:intergenic | 35.0% |
ATATAAATGTAGGAGGAGAC+TGG | - | chr4_1:80594296-80594315 | Msa0576530:intron | 35.0% | |
TATAAATGTAGGAGGAGACT+GGG | - | chr4_1:80594297-80594316 | Msa0576530:intron | 35.0% | |
!! | AGTATTGGTAAAGCACAACA+AGG | - | chr4_1:80594328-80594347 | Msa0576530:intron | 35.0% |
! | GTATTGGTAAAGCACAACAA+GGG | - | chr4_1:80594329-80594348 | Msa0576530:intron | 35.0% |
TATTGGTAAAGCACAACAAG+GGG | - | chr4_1:80594330-80594349 | Msa0576530:intron | 35.0% | |
!! | GGGTGTCATTGTAAAAAATC+TGG | - | chr4_1:80594350-80594369 | Msa0576530:intron | 35.0% |
AACATTCACAGTACTTCTTG+AGG | + | chr4_1:80594379-80594398 | None:intergenic | 35.0% | |
AGCGAGAAAAAGAAAAGGTT+CGG | - | chr4_1:80594583-80594602 | Msa0576530:intron | 35.0% | |
AATTAGGTAAACTGGGGAAA+TGG | - | chr4_1:80594701-80594720 | Msa0576530:intron | 35.0% | |
TCATGTAACATTTCCCCATT+AGG | - | chr4_1:80594761-80594780 | Msa0576530:intron | 35.0% | |
GATATATGCTTCCCTTGATT+TGG | - | chr4_1:80594856-80594875 | Msa0576530:intron | 35.0% | |
AACACATTGGACCAAATCAA+GGG | + | chr4_1:80594870-80594889 | None:intergenic | 35.0% | |
GTCTCAAAACACTATCCTAT+TGG | - | chr4_1:80594924-80594943 | Msa0576530:CDS | 35.0% | |
CACTATCCTATTGGAAAGAA+AGG | - | chr4_1:80594933-80594952 | Msa0576530:CDS | 35.0% | |
ATGAAGCCTTTCTTTCCAAT+AGG | + | chr4_1:80594942-80594961 | None:intergenic | 35.0% | |
! | TTTTCATTGAGAACCAGTAG+GGG | + | chr4_1:80595190-80595209 | None:intergenic | 35.0% |
! | GTTTTCATTGAGAACCAGTA+GGG | + | chr4_1:80595191-80595210 | None:intergenic | 35.0% |
AAATCAAGTATGTGACTGTG+AGG | - | chr4_1:80595363-80595382 | Msa0576530:intron | 35.0% | |
!!! | CGAACTAGCAATTTAGCTTT+TGG | + | chr4_1:80595446-80595465 | None:intergenic | 35.0% |
GCCCTTCAAAATTTATGTAC+AGG | - | chr4_1:80595650-80595669 | Msa0576530:intron | 35.0% | |
!!! | TCTGTTTTAGTGCTAGTATC+TGG | - | chr4_1:80595808-80595827 | Msa0576530:intron | 35.0% |
AAGTTTGGAAAGGGAAAAAG+CGG | + | chr4_1:80596004-80596023 | None:intergenic | 35.0% | |
AATGTGGAGAAGTTTGGAAA+GGG | + | chr4_1:80596013-80596032 | None:intergenic | 35.0% | |
AAATGTGGAGAAGTTTGGAA+AGG | + | chr4_1:80596014-80596033 | None:intergenic | 35.0% | |
TTGTTTGGAAAGGGAAAAAG+CGG | + | chr4_1:80596040-80596059 | None:intergenic | 35.0% | |
AGCAGCTTAATTTAATGAGC+GGG | - | chr4_1:80596075-80596094 | Msa0576530:CDS | 35.0% | |
GAATTATTCACCAAGCTCAA+TGG | - | chr4_1:80596277-80596296 | Msa0576530:CDS | 35.0% | |
ATTTGTCAATCCATTGAGCT+TGG | + | chr4_1:80596290-80596309 | None:intergenic | 35.0% | |
!! | AAGCTCAATGGATTGACAAA+TGG | - | chr4_1:80596289-80596308 | Msa0576530:CDS | 35.0% |
!! | TGAGAGTTTGATTTGCCAAA+TGG | - | chr4_1:80596387-80596406 | Msa0576530:intron | 35.0% |
CTTGTCATTAGATAACTGTC+TGG | - | chr4_1:80596581-80596600 | Msa0576530:intron | 35.0% | |
! | GTCTGGCGAATTTGAAATTT+AGG | - | chr4_1:80596598-80596617 | Msa0576530:intron | 35.0% |
! | GGCGAATTTGAAATTTAGGA+TGG | - | chr4_1:80596602-80596621 | Msa0576530:intron | 35.0% |
TAGATAAGCACACAGAAGAT+CGG | - | chr4_1:80596820-80596839 | Msa0576530:CDS | 35.0% | |
! | TGGTAATTGCTCTTGATTTG+AGG | + | chr4_1:80596865-80596884 | None:intergenic | 35.0% |
AGAGCAATTACCAAACCAAA+AGG | - | chr4_1:80596872-80596891 | Msa0576530:CDS | 35.0% | |
ACATCTTCACAATTGCCTTA+TGG | - | chr4_1:80597104-80597123 | Msa0576530:five_prime_UTR | 35.0% | |
ATCACTATGGGCGAAATAAA+TGG | - | chr4_1:80597203-80597222 | Msa0576530:five_prime_UTR | 35.0% | |
GGATTAAGGTTCTCATCGTA+GGG | + | chr4_1:80592316-80592335 | None:intergenic | 40.0% | |
TGGATTAAGGTTCTCATCGT+AGG | + | chr4_1:80592317-80592336 | None:intergenic | 40.0% | |
!!! | AATTTTTGGGGCGATCGAAT+GGG | - | chr4_1:80592623-80592642 | Msa0576530:CDS | 40.0% |
!!! | CCAATTGTGCGTTTTTTGGA+GGG | + | chr4_1:80592670-80592689 | None:intergenic | 40.0% |
!!! | TCCAATTGTGCGTTTTTTGG+AGG | + | chr4_1:80592671-80592690 | None:intergenic | 40.0% |
! | ATTCCGTTAAGAAGCTTGCT+AGG | - | chr4_1:80592690-80592709 | Msa0576530:CDS | 40.0% |
CAATTGCAGCCAATAAGTTC+CGG | + | chr4_1:80593362-80593381 | None:intergenic | 40.0% | |
! | ATTGTGAATGTTTTGCGTCG+GGG | - | chr4_1:80593422-80593441 | Msa0576530:intron | 40.0% |
AACGCAATCCAAATGCCTTT+AGG | - | chr4_1:80593533-80593552 | Msa0576530:intron | 40.0% | |
!!! | ATTTTCGGCCTAAAGGCATT+TGG | + | chr4_1:80593544-80593563 | None:intergenic | 40.0% |
TTGTTATCACGTGTTCCATG+AGG | + | chr4_1:80593577-80593596 | None:intergenic | 40.0% | |
TCATGGAACACGTGATAACA+AGG | - | chr4_1:80593576-80593595 | Msa0576530:intron | 40.0% | |
! | CTTATATTTTGTCACGGAGG+AGG | + | chr4_1:80593726-80593745 | None:intergenic | 40.0% |
! | AGTGGATTTGCATCAGAAGT+TGG | - | chr4_1:80594083-80594102 | Msa0576530:intron | 40.0% |
GTGGATTTGCATCAGAAGTT+GGG | - | chr4_1:80594084-80594103 | Msa0576530:intron | 40.0% | |
ATAAATGTAGGAGGAGACTG+GGG | - | chr4_1:80594298-80594317 | Msa0576530:intron | 40.0% | |
GACTGGGGAAGTTAAAGTAT+TGG | - | chr4_1:80594313-80594332 | Msa0576530:intron | 40.0% | |
! | CAGAACAAAGAATGTTGGCT+TGG | + | chr4_1:80594403-80594422 | None:intergenic | 40.0% |
! | TTTCTTTTTCTCGCTACTGG+TGG | + | chr4_1:80594578-80594597 | None:intergenic | 40.0% |
! | CCTTTTCTTTTTCTCGCTAC+TGG | + | chr4_1:80594581-80594600 | None:intergenic | 40.0% |
CCAGTAGCGAGAAAAAGAAA+AGG | - | chr4_1:80594578-80594597 | Msa0576530:intron | 40.0% | |
AAAGAAAAGGTTCGGAACTC+TGG | - | chr4_1:80594591-80594610 | Msa0576530:intron | 40.0% | |
ATAATACTGCAGGCAGTTCA+GGG | - | chr4_1:80594666-80594685 | Msa0576530:intron | 40.0% | |
CTGCAAAATGCTGTCTCAAT+TGG | + | chr4_1:80594741-80594760 | None:intergenic | 40.0% | |
GAACACATTGGACCAAATCA+AGG | + | chr4_1:80594871-80594890 | None:intergenic | 40.0% | |
CTTCCATCTTTGCTCAATGT+GGG | - | chr4_1:80594986-80595005 | Msa0576530:CDS | 40.0% | |
TATCCCACATTGAGCAAAGA+TGG | + | chr4_1:80594992-80595011 | None:intergenic | 40.0% | |
! | CCATCGCAAACTCAAACTTT+TGG | + | chr4_1:80595032-80595051 | None:intergenic | 40.0% |
! | CCAAAAGTTTGAGTTTGCGA+TGG | - | chr4_1:80595029-80595048 | Msa0576530:CDS | 40.0% |
GTGAATTCCACTATGAGTGT+CGG | + | chr4_1:80595069-80595088 | None:intergenic | 40.0% | |
GGAATTCACTCTAATCCCTT+TGG | - | chr4_1:80595080-80595099 | Msa0576530:CDS | 40.0% | |
AACCTTAAACCTGCACCAAA+GGG | + | chr4_1:80595098-80595117 | None:intergenic | 40.0% | |
AAACCTTAAACCTGCACCAA+AGG | + | chr4_1:80595099-80595118 | None:intergenic | 40.0% | |
TCCTTGGGTTTCTCATTCTT+TGG | - | chr4_1:80595141-80595160 | Msa0576530:CDS | 40.0% | |
ACCAAAGAATGAGAAACCCA+AGG | + | chr4_1:80595145-80595164 | None:intergenic | 40.0% | |
TTTCATTGAGAACCAGTAGG+GGG | + | chr4_1:80595189-80595208 | None:intergenic | 40.0% | |
! | CGTTTTCATTGAGAACCAGT+AGG | + | chr4_1:80595192-80595211 | None:intergenic | 40.0% |
TACCACGATAAGTTCACTTC+TGG | - | chr4_1:80595404-80595423 | Msa0576530:intron | 40.0% | |
ACAGGAGACAAAGATGAAGA+GGG | + | chr4_1:80595598-80595617 | None:intergenic | 40.0% | |
TTTGAAGGGCCTAATGTTGA+AGG | + | chr4_1:80595640-80595659 | None:intergenic | 40.0% | |
TTTAGTGCTAGTATCTGGAC+AGG | - | chr4_1:80595813-80595832 | Msa0576530:intron | 40.0% | |
AGTTTGGAAAGGGAAAAAGC+GGG | + | chr4_1:80596003-80596022 | None:intergenic | 40.0% | |
TGTTTGGAAAGGGAAAAAGC+GGG | + | chr4_1:80596039-80596058 | None:intergenic | 40.0% | |
CGTTTGACTACACGTAAACA+AGG | + | chr4_1:80596363-80596382 | None:intergenic | 40.0% | |
CAAACCAAAAGGAAGCTGAT+GGG | - | chr4_1:80596883-80596902 | Msa0576530:exon | 40.0% | |
AAACCAAAAGGAAGCTGATG+GGG | - | chr4_1:80596884-80596903 | Msa0576530:exon | 40.0% | |
!!! | CAGGACTGGTTTTATCAGTT+TGG | + | chr4_1:80596944-80596963 | None:intergenic | 40.0% |
!! | TGAACTGGAATTTTCAGGAC+TGG | + | chr4_1:80596958-80596977 | None:intergenic | 40.0% |
! | CCATCTGAACTGGAATTTTC+AGG | + | chr4_1:80596963-80596982 | None:intergenic | 40.0% |
CCTGAAAATTCCAGTTCAGA+TGG | - | chr4_1:80596960-80596979 | Msa0576530:five_prime_UTR | 40.0% | |
!! | ATGGTGCTGATGTTCCAAAA+GGG | - | chr4_1:80596979-80596998 | Msa0576530:five_prime_UTR | 40.0% |
CACATCAATGCTAAAGTTCC+AGG | + | chr4_1:80597017-80597036 | None:intergenic | 40.0% | |
TCACAATTGCCTTATGGACA+AGG | - | chr4_1:80597110-80597129 | Msa0576530:five_prime_UTR | 40.0% | |
TCTTTCGTTCCTTGTCCATA+AGG | + | chr4_1:80597122-80597141 | None:intergenic | 40.0% | |
! | GATCATGCGGTTGTGGATTA+AGG | + | chr4_1:80592330-80592349 | None:intergenic | 45.0% |
TCAGTTTGATCATGCGGTTG+TGG | + | chr4_1:80592337-80592356 | None:intergenic | 45.0% | |
TTCAAAAGCTCGTGAGAGAG+AGG | - | chr4_1:80592397-80592416 | Msa0576530:CDS | 45.0% | |
TCAAAAGCTCGTGAGAGAGA+GGG | - | chr4_1:80592398-80592417 | Msa0576530:CDS | 45.0% | |
!!! | GAATTTTTGGGGCGATCGAA+TGG | - | chr4_1:80592622-80592641 | Msa0576530:CDS | 45.0% |
CCCTCCAAAAAACGCACAAT+TGG | - | chr4_1:80592667-80592686 | Msa0576530:CDS | 45.0% | |
CTGCCTAGCAAGCTTCTTAA+CGG | + | chr4_1:80592696-80592715 | None:intergenic | 45.0% | |
! | CAGCTCGATTTCAACGCTTT+TGG | - | chr4_1:80592713-80592732 | Msa0576530:intron | 45.0% |
! | CTCGATTTCAACGCTTTTGG+TGG | - | chr4_1:80592716-80592735 | Msa0576530:intron | 45.0% |
! | CGGAACTTATTGGCTGCAAT+TGG | - | chr4_1:80593360-80593379 | Msa0576530:intron | 45.0% |
!! | GCGTTCTAAAGTTGCCTCAA+CGG | + | chr4_1:80593518-80593537 | None:intergenic | 45.0% |
! | TGAGGACTGCTCGCAATTTT+CGG | + | chr4_1:80593559-80593578 | None:intergenic | 45.0% |
AAAATTGCGAGCAGTCCTCA+TGG | - | chr4_1:80593559-80593578 | Msa0576530:intron | 45.0% | |
CACGTGATAACAAGGTATGC+AGG | - | chr4_1:80593584-80593603 | Msa0576530:intron | 45.0% | |
AACAGACAATGATGCGCTAG+CGG | + | chr4_1:80593699-80593718 | None:intergenic | 45.0% | |
AATCCACTCTTATAGGGACG+TGG | + | chr4_1:80594071-80594090 | None:intergenic | 45.0% | |
AAAGCCGGCATTTCTTGTGT+TGG | - | chr4_1:80594194-80594213 | Msa0576530:intron | 45.0% | |
CAATATGGCGTATCTTCAGC+AGG | - | chr4_1:80594502-80594521 | Msa0576530:intron | 45.0% | |
AGCTCCAGTTATAGCAGCAT+TGG | + | chr4_1:80594531-80594550 | None:intergenic | 45.0% | |
GCTGCTATAACTGGAGCTAT+TGG | - | chr4_1:80594533-80594552 | Msa0576530:intron | 45.0% | |
! | TGGTGGTGATGAATAACCAG+AGG | + | chr4_1:80594561-80594580 | None:intergenic | 45.0% |
GATCCATCGTTTGGAAAGCT+AGG | - | chr4_1:80594626-80594645 | Msa0576530:intron | 45.0% | |
! | TGTCCTAGCTTTCCAAACGA+TGG | + | chr4_1:80594632-80594651 | None:intergenic | 45.0% |
GTTTGGAAAGCTAGGACAAC+AGG | - | chr4_1:80594634-80594653 | Msa0576530:intron | 45.0% | |
GATAATACTGCAGGCAGTTC+AGG | - | chr4_1:80594665-80594684 | Msa0576530:intron | 45.0% | |
TAATACTGCAGGCAGTTCAG+GGG | - | chr4_1:80594667-80594686 | Msa0576530:intron | 45.0% | |
! | GGCAGTTCAGGGGTTTATTT+TGG | - | chr4_1:80594677-80594696 | Msa0576530:intron | 45.0% |
!! | GACAGTCTAGCTCTCTTCAT+GGG | + | chr4_1:80594907-80594926 | None:intergenic | 45.0% |
!! | AGACAGTCTAGCTCTCTTCA+TGG | + | chr4_1:80594908-80594927 | None:intergenic | 45.0% |
GCTTCCATCTTTGCTCAATG+TGG | - | chr4_1:80594985-80595004 | Msa0576530:CDS | 45.0% | |
! | ATCCCTTTGGTGCAGGTTTA+AGG | - | chr4_1:80595093-80595112 | Msa0576530:CDS | 45.0% |
TTCATTGAGAACCAGTAGGG+GGG | + | chr4_1:80595188-80595207 | None:intergenic | 45.0% | |
GACCAGAAGTGAACTTATCG+TGG | + | chr4_1:80595409-80595428 | None:intergenic | 45.0% | |
TATCAGGCAAATCCTGTCAG+AGG | - | chr4_1:80595562-80595581 | Msa0576530:intron | 45.0% | |
GACAGGAGACAAAGATGAAG+AGG | + | chr4_1:80595599-80595618 | None:intergenic | 45.0% | |
AATGTTGAAGGTCCAACACG+AGG | + | chr4_1:80595628-80595647 | None:intergenic | 45.0% | |
CGTGTTGGACCTTCAACATT+AGG | - | chr4_1:80595628-80595647 | Msa0576530:intron | 45.0% | |
AAACAGAGCAAAGCTCCTTC+AGG | + | chr4_1:80595795-80595814 | None:intergenic | 45.0% | |
CAGGCCACAAAAACACTTAC+AGG | - | chr4_1:80595832-80595851 | Msa0576530:intron | 45.0% | |
GTTTGGAAAGGGAAAAAGCG+GGG | + | chr4_1:80596002-80596021 | None:intergenic | 45.0% | |
GGGGTAAATGTGGAGAAGTT+TGG | + | chr4_1:80596019-80596038 | None:intergenic | 45.0% | |
GTTTGGAAAGGGAAAAAGCG+GGG | + | chr4_1:80596002-80596021 | None:intergenic | 45.0% | |
! | TGAGCGGGCATTGTCTATTA+TGG | - | chr4_1:80596090-80596109 | Msa0576530:CDS | 45.0% |
! | GCTGCTGTTTACAGCTCAAA+AGG | + | chr4_1:80596422-80596441 | None:intergenic | 45.0% |
TAAACAGCAGCTTCCTCTGT+AGG | - | chr4_1:80596431-80596450 | Msa0576530:intron | 45.0% | |
!! | CTTTCCTGCTTTTCCTACAG+AGG | + | chr4_1:80596447-80596466 | None:intergenic | 45.0% |
CTCTGTAGGAAAAGCAGGAA+AGG | - | chr4_1:80596445-80596464 | Msa0576530:intron | 45.0% | |
CTATGGCGCCTCAAAATGTT+TGG | - | chr4_1:80596533-80596552 | Msa0576530:intron | 45.0% | |
GACAAGCAATCCTGACAACT+GGG | + | chr4_1:80596567-80596586 | None:intergenic | 45.0% | |
TGACAAGCAATCCTGACAAC+TGG | + | chr4_1:80596568-80596587 | None:intergenic | 45.0% | |
!! | CCATCAGCTTCCTTTTGGTT+TGG | + | chr4_1:80596885-80596904 | None:intergenic | 45.0% |
CCAAACCAAAAGGAAGCTGA+TGG | - | chr4_1:80596882-80596901 | Msa0576530:exon | 45.0% | |
AACATCAGCACCATCTGAAC+TGG | + | chr4_1:80596973-80596992 | None:intergenic | 45.0% | |
!! | GATGGTGCTGATGTTCCAAA+AGG | - | chr4_1:80596978-80596997 | Msa0576530:five_prime_UTR | 45.0% |
GCTAAAGTTCCAGGAGACAT+TGG | + | chr4_1:80597008-80597027 | None:intergenic | 45.0% | |
AGATCTATGCAGAGCAAGAG+AGG | - | chr4_1:80597141-80597160 | Msa0576530:five_prime_UTR | 45.0% | |
GATCGAATGGGTGAAGGTGA+GGG | - | chr4_1:80592635-80592654 | Msa0576530:CDS | 50.0% | |
CCTAAGACTGACCCCACTTT+GGG | + | chr4_1:80592809-80592828 | None:intergenic | 50.0% | |
GCGCAACAACAAGTGCATAG+AGG | + | chr4_1:80593334-80593353 | None:intergenic | 50.0% | |
!! | ACTTGTTGTTGCGCCTTTGC+CGG | - | chr4_1:80593340-80593359 | Msa0576530:intron | 50.0% |
CAGCCAATAAGTTCCGGCAA+AGG | + | chr4_1:80593356-80593375 | None:intergenic | 50.0% | |
! | GCTCGCAATTTTCGGCCTAA+AGG | + | chr4_1:80593551-80593570 | None:intergenic | 50.0% |
CAACCACGTCCCTATAAGAG+TGG | - | chr4_1:80594065-80594084 | Msa0576530:intron | 50.0% | |
ATCAGAAGTTGGGCCTCCAA+TGG | - | chr4_1:80594094-80594113 | Msa0576530:intron | 50.0% | |
AAGTTGGGCCTCCAATGGTA+TGG | - | chr4_1:80594099-80594118 | Msa0576530:intron | 50.0% | |
TGAAGGAAGTGAAGAGCGAC+AGG | - | chr4_1:80594454-80594473 | Msa0576530:intron | 50.0% | |
GCAGCCAATGCTGCTATAAC+TGG | - | chr4_1:80594524-80594543 | Msa0576530:intron | 50.0% | |
!! | ACTGGAGCTATTGGTTCCTC+TGG | - | chr4_1:80594542-80594561 | Msa0576530:intron | 50.0% |
AACGATGGATCCCTGATGGA+CGG | + | chr4_1:80594617-80594636 | None:intergenic | 50.0% | |
TCCATCAGGGATCCATCGTT+TGG | - | chr4_1:80594617-80594636 | Msa0576530:intron | 50.0% | |
TCCAAACGATGGATCCCTGA+TGG | + | chr4_1:80594621-80594640 | None:intergenic | 50.0% | |
! | CACTCTAATCCCTTTGGTGC+AGG | - | chr4_1:80595086-80595105 | Msa0576530:CDS | 50.0% |
TCATTGAGAACCAGTAGGGG+GGG | + | chr4_1:80595187-80595206 | None:intergenic | 50.0% | |
GCTTCAGTCGTCGTAGCAAA+AGG | + | chr4_1:80595215-80595234 | None:intergenic | 50.0% | |
CAAGTATGTGACTGTGAGGC+TGG | - | chr4_1:80595367-80595386 | Msa0576530:intron | 50.0% | |
AAGCTTCCTGCAGTTGAGAG+TGG | - | chr4_1:80595469-80595488 | Msa0576530:intron | 50.0% | |
TAGCTTCCACTCTCAACTGC+AGG | + | chr4_1:80595478-80595497 | None:intergenic | 50.0% | |
!! | AAAGATGAAGAGGGTGCTGC+AGG | + | chr4_1:80595589-80595608 | None:intergenic | 50.0% |
! | AAGGTCCAACACGAGGTACT+GGG | + | chr4_1:80595621-80595640 | None:intergenic | 50.0% |
CATACAACCACAGCACCTGA+AGG | - | chr4_1:80595777-80595796 | Msa0576530:intron | 50.0% | |
GGGAAAAAGCGGGGTAAATG+TGG | + | chr4_1:80595993-80596012 | None:intergenic | 50.0% | |
GGGAAAAAGCGGGGTAAATG+TGG | + | chr4_1:80595993-80596012 | None:intergenic | 50.0% | |
GCTTCCTCTGTAGGAAAAGC+AGG | - | chr4_1:80596440-80596459 | Msa0576530:intron | 50.0% | |
GGTAAACCTACCCAGTTGTC+AGG | - | chr4_1:80596554-80596573 | Msa0576530:intron | 50.0% | |
AGCAATCCTGACAACTGGGT+AGG | + | chr4_1:80596563-80596582 | None:intergenic | 50.0% | |
! | TCTCCCCATCAGCTTCCTTT+TGG | + | chr4_1:80596890-80596909 | None:intergenic | 50.0% |
AGCTGATGGGGAGAAAGTTG+TGG | - | chr4_1:80596896-80596915 | Msa0576530:five_prime_UTR | 50.0% | |
! | GTGCTGATGTTCCAAAAGGG+AGG | - | chr4_1:80596982-80597001 | Msa0576530:five_prime_UTR | 50.0% |
AAAGCTCGTGAGAGAGAGGG+AGG | - | chr4_1:80592401-80592420 | Msa0576530:CDS | 55.0% | |
!! | AAAGTCCCTCGCGCCGTTTT+TGG | - | chr4_1:80592476-80592495 | Msa0576530:CDS | 55.0% |
!!! | AAGTCCCTCGCGCCGTTTTT+GGG | - | chr4_1:80592477-80592496 | Msa0576530:CDS | 55.0% |
AGATCCCAAAAACGGCGCGA+GGG | + | chr4_1:80592484-80592503 | None:intergenic | 55.0% | |
CGATCGAATGGGTGAAGGTG+AGG | - | chr4_1:80592634-80592653 | Msa0576530:CDS | 55.0% | |
! | GCAGGAAGAGGAGGAAGTGT+CGG | + | chr4_1:80592785-80592804 | None:intergenic | 55.0% |
ACTTTGGGTGCAGGAAGAGG+AGG | + | chr4_1:80592794-80592813 | None:intergenic | 55.0% | |
TCCTCTTCCTGCACCCAAAG+TGG | - | chr4_1:80592793-80592812 | Msa0576530:intron | 55.0% | |
CCTCTTCCTGCACCCAAAGT+GGG | - | chr4_1:80592794-80592813 | Msa0576530:intron | 55.0% | |
CTCTTCCTGCACCCAAAGTG+GGG | - | chr4_1:80592795-80592814 | Msa0576530:intron | 55.0% | |
CCCAAAGTGGGGTCAGTCTT+AGG | - | chr4_1:80592806-80592825 | Msa0576530:intron | 55.0% | |
GCCTAAGACTGACCCCACTT+TGG | + | chr4_1:80592810-80592829 | None:intergenic | 55.0% | |
GCGCCTTTGCCGGAACTTAT+TGG | - | chr4_1:80593350-80593369 | Msa0576530:intron | 55.0% | |
GCGTCGGGGATATATTGCGA+TGG | - | chr4_1:80593436-80593455 | Msa0576530:intron | 55.0% | |
!! | GAGCGACAGGCTTTGTTCCA+TGG | - | chr4_1:80594467-80594486 | Msa0576530:intron | 55.0% |
GAGTTTGCGATGGCCCATTC+TGG | - | chr4_1:80595039-80595058 | Msa0576530:CDS | 55.0% | |
!! | GAGTGTCGGACAGCCAGAAT+GGG | + | chr4_1:80595055-80595074 | None:intergenic | 55.0% |
!! | TGAGTGTCGGACAGCCAGAA+TGG | + | chr4_1:80595056-80595075 | None:intergenic | 55.0% |
TGGCTGTCCGACACTCATAG+TGG | - | chr4_1:80595059-80595078 | Msa0576530:CDS | 55.0% | |
CATTGAGAACCAGTAGGGGG+GGG | + | chr4_1:80595186-80595205 | None:intergenic | 55.0% | |
GAAGGTCCAACACGAGGTAC+TGG | + | chr4_1:80595622-80595641 | None:intergenic | 55.0% | |
! | CAAAGCTCCTTCAGGTGCTG+TGG | + | chr4_1:80595787-80595806 | None:intergenic | 55.0% |
!! | GGAGACATTGGCCTCCCTTT+TGG | + | chr4_1:80596996-80597015 | None:intergenic | 55.0% |
AAAGGGAGGCCAATGTCTCC+TGG | - | chr4_1:80596996-80597015 | Msa0576530:five_prime_UTR | 55.0% | |
TGAGCCATCGACGCAGTTGA+GGG | + | chr4_1:80597074-80597093 | None:intergenic | 55.0% | |
ATGAGCCATCGACGCAGTTG+AGG | + | chr4_1:80597075-80597094 | None:intergenic | 55.0% | |
CAGATCCCAAAAACGGCGCG+AGG | + | chr4_1:80592485-80592504 | None:intergenic | 60.0% | |
TGGGGCGATCGAATGGGTGA+AGG | - | chr4_1:80592629-80592648 | Msa0576530:CDS | 60.0% | |
!! | CAACGCTTTTGGTGGCACGC+CGG | - | chr4_1:80592724-80592743 | Msa0576530:intron | 60.0% |
! | TCCGGCAGAGGTGCAGTTAC+CGG | + | chr4_1:80592746-80592765 | None:intergenic | 60.0% |
!! | GAAGTGTCGGCGGTGGTTGT+GGG | + | chr4_1:80592772-80592791 | None:intergenic | 60.0% |
!! | GGAAGAGGAGGAAGTGTCGG+CGG | + | chr4_1:80592782-80592801 | None:intergenic | 60.0% |
CCCACTTTGGGTGCAGGAAG+AGG | + | chr4_1:80592797-80592816 | None:intergenic | 60.0% | |
ACTGACCCCACTTTGGGTGC+AGG | + | chr4_1:80592803-80592822 | None:intergenic | 60.0% | |
GGCAAGACGAGAAGCCGTTG+AGG | - | chr4_1:80593501-80593520 | Msa0576530:intron | 60.0% | |
GGAACTCTGGCCGTCCATCA+GGG | - | chr4_1:80594604-80594623 | Msa0576530:intron | 60.0% | |
!! | CCAACACGAGGTACTGGGAC+AGG | + | chr4_1:80595616-80595635 | None:intergenic | 60.0% |
CCTGTCCCAGTACCTCGTGT+TGG | - | chr4_1:80595613-80595632 | Msa0576530:intron | 60.0% | |
AGCCATCGACGCAGTTGAGG+GGG | + | chr4_1:80597072-80597091 | None:intergenic | 60.0% | |
GAGCCATCGACGCAGTTGAG+GGG | + | chr4_1:80597073-80597092 | None:intergenic | 60.0% | |
GCCGGTAACTGCACCTCTGC+CGG | - | chr4_1:80592742-80592761 | Msa0576530:intron | 65.0% | |
GGTTGTGGGTGTTCCGGCAG+AGG | + | chr4_1:80592758-80592777 | None:intergenic | 65.0% | |
GGCGGTGGTTGTGGGTGTTC+CGG | + | chr4_1:80592764-80592783 | None:intergenic | 65.0% | |
!! | GGAAGTGTCGGCGGTGGTTG+TGG | + | chr4_1:80592773-80592792 | None:intergenic | 65.0% |
!! | AGAGGAGGAAGTGTCGGCGG+TGG | + | chr4_1:80592779-80592798 | None:intergenic | 65.0% |
CGGAACTCTGGCCGTCCATC+AGG | - | chr4_1:80594603-80594622 | Msa0576530:intron | 65.0% | |
AGAACCAGTAGGGGGGGGCT+AGG | + | chr4_1:80595181-80595200 | None:intergenic | 65.0% | |
! | GGTGCTGCAGGACCTCTGAC+AGG | + | chr4_1:80595577-80595596 | None:intergenic | 65.0% |
TGCCCCCTCAACTGCGTCGA+TGG | - | chr4_1:80597067-80597086 | Msa0576530:five_prime_UTR | 65.0% | |
GAAGCCTAGCCCCCCCCTAC+TGG | - | chr4_1:80595174-80595193 | Msa0576530:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 80592303 | 80597232 | 80592303 | ID=Msa0576530;Name=Msa0576530 |
chr4_1 | mRNA | 80592303 | 80597232 | 80592303 | ID=Msa0576530-mRNA-1;Parent=Msa0576530;Name=Msa0576530-mRNA-1;_AED=0.17;_eAED=0.17;_QI=338|1|0.85|1|1|1|7|0|478 |
chr4_1 | exon | 80592303 | 80592730 | 80592303 | ID=Msa0576530-mRNA-1:exon:28909;Parent=Msa0576530-mRNA-1 |
chr4_1 | exon | 80593682 | 80593776 | 80593682 | ID=Msa0576530-mRNA-1:exon:28908;Parent=Msa0576530-mRNA-1 |
chr4_1 | exon | 80593864 | 80593967 | 80593864 | ID=Msa0576530-mRNA-1:exon:28907;Parent=Msa0576530-mRNA-1 |
chr4_1 | exon | 80594880 | 80595227 | 80594880 | ID=Msa0576530-mRNA-1:exon:28906;Parent=Msa0576530-mRNA-1 |
chr4_1 | exon | 80595938 | 80596115 | 80595938 | ID=Msa0576530-mRNA-1:exon:28905;Parent=Msa0576530-mRNA-1 |
chr4_1 | exon | 80596216 | 80596323 | 80596216 | ID=Msa0576530-mRNA-1:exon:28904;Parent=Msa0576530-mRNA-1 |
chr4_1 | exon | 80596719 | 80597232 | 80596719 | ID=Msa0576530-mRNA-1:exon:28903;Parent=Msa0576530-mRNA-1 |
chr4_1 | five_prime_UTR | 80596895 | 80597232 | 80596895 | ID=Msa0576530-mRNA-1:five_prime_utr;Parent=Msa0576530-mRNA-1 |
chr4_1 | CDS | 80596719 | 80596894 | 80596719 | ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1 |
chr4_1 | CDS | 80596216 | 80596323 | 80596216 | ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1 |
chr4_1 | CDS | 80595938 | 80596115 | 80595938 | ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1 |
chr4_1 | CDS | 80594880 | 80595227 | 80594880 | ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1 |
chr4_1 | CDS | 80593864 | 80593967 | 80593864 | ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1 |
chr4_1 | CDS | 80593682 | 80593776 | 80593682 | ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1 |
chr4_1 | CDS | 80592303 | 80592730 | 80592303 | ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1 |
Gene Sequence |
Protein sequence |