AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576530 MtrunA17_Chr8g0390351 97.689 476 11 0 1 476 1 476 0.0 966
Msa0576530 MtrunA17_Chr6g0485811 67.429 525 119 9 1 476 1 522 0.0 674
Msa0576530 MtrunA17_Chr3g0139951 48.845 303 146 4 36 334 101 398 6.04e-85 267
Msa0576530 MtrunA17_Chr1g0149101 45.000 140 73 3 83 218 498 637 9.27e-30 123
Msa0576530 MtrunA17_Chr5g0394661 44.615 130 71 1 83 211 488 617 1.30e-29 122
Msa0576530 MtrunA17_Chr1g0205031 32.812 128 85 1 85 211 407 534 2.18e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576530 AT4G29000.1 65.714 420 131 7 61 475 109 520 0.0 536
Msa0576530 AT2G20110.3 53.216 513 163 13 1 475 1 474 2.23e-171 493
Msa0576530 AT2G20110.1 53.216 513 163 13 1 475 1 474 2.72e-171 494
Msa0576530 AT2G20110.2 53.216 513 163 13 1 475 1 474 4.44e-171 494
Msa0576530 AT5G25790.1 42.793 444 199 11 47 478 50 450 3.53e-106 324
Msa0576530 AT5G25790.2 42.664 443 199 11 47 477 50 449 1.91e-105 323
Msa0576530 AT5G25790.3 42.411 448 191 13 47 478 50 446 1.31e-103 317
Msa0576530 AT3G16160.1 31.291 457 193 14 24 470 17 362 2.08e-42 154
Msa0576530 AT3G22760.2 44.172 163 82 5 61 219 184 341 1.68e-34 135
Msa0576530 AT3G22760.1 44.172 163 82 5 61 219 307 464 3.05e-34 136
Msa0576530 AT4G14770.1 44.776 134 67 3 83 212 375 505 2.05e-32 131
Msa0576530 AT4G14770.2 44.776 134 67 3 83 212 355 485 2.50e-32 130
Msa0576530 AT4G14770.3 44.776 134 67 3 83 212 356 486 2.61e-32 130
Msa0576530 AT3G22780.1 43.704 135 69 3 83 213 401 532 1.73e-31 128
Msa0576530 AT3G04850.1 45.736 129 69 1 83 210 453 581 4.93e-31 127

Find 115 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTTGATTTAGGAGATTC+TGG 0.202009 4_1:+80596297 None:intergenic
TAACAATAATCACAACAATT+AGG 0.206360 4_1:+80596961 None:intergenic
TTGGGTCTTGACTTTGATTT+AGG 0.219084 4_1:+80596288 None:intergenic
TCTTAATAGGGTTATCACTA+TGG 0.229357 4_1:-80592323 Msa0576530:CDS
GGAGACATTGGCCTCCCTTT+TGG 0.278244 4_1:+80592520 None:intergenic
TCTCCCCATCAGCTTCCTTT+TGG 0.283654 4_1:+80592626 None:intergenic
GGAAGTGTCGGCGGTGGTTG+TGG 0.289843 4_1:+80596743 None:intergenic
CAGCTCGATTTCAACGCTTT+TGG 0.295923 4_1:-80596800 Msa0576530:CDS
GATCATGCGGTTGTGGATTA+AGG 0.296996 4_1:+80597186 None:intergenic
ACATCTTCACAATTGCCTTA+TGG 0.308433 4_1:-80592409 Msa0576530:CDS
GCAGCCAATGCTGCTATAAC+TGG 0.312657 4_1:-80594989 Msa0576530:CDS
ATCACTATGGGCGAAATAAA+TGG 0.314147 4_1:-80592310 Msa0576530:CDS
GAAGTGTCGGCGGTGGTTGT+GGG 0.336832 4_1:+80596744 None:intergenic
CGGAACTCTGGCCGTCCATC+AGG 0.341120 4_1:-80594910 Msa0576530:CDS
AACAATAATCACAACAATTA+GGG 0.349273 4_1:+80596962 None:intergenic
GGCGGTGGTTGTGGGTGTTC+CGG 0.362076 4_1:+80596752 None:intergenic
CGTGTTGGACCTTCAACATT+AGG 0.374824 4_1:-80593885 Msa0576530:CDS
GCTGCTATAACTGGAGCTAT+TGG 0.378616 4_1:-80594980 Msa0576530:CDS
TCCGGCAGAGGTGCAGTTAC+CGG 0.392618 4_1:+80596770 None:intergenic
AAACAGAGCAAAGCTCCTTC+AGG 0.392877 4_1:+80593721 None:intergenic
TCTTTCGTTCCTTGTCCATA+AGG 0.397871 4_1:+80592394 None:intergenic
TGGAGATCAAAACAACAATA+TGG 0.398327 4_1:-80595026 Msa0576530:CDS
CACATCAATGCTAAAGTTCC+AGG 0.399973 4_1:+80592499 None:intergenic
CTGCCTAGCAAGCTTCTTAA+CGG 0.406846 4_1:+80596820 None:intergenic
GAAGGTCCAACACGAGGTAC+TGG 0.411988 4_1:+80593894 None:intergenic
AACGCAATCCAAATGCCTTT+AGG 0.412558 4_1:-80595980 Msa0576530:CDS
ACTGGAGCTATTGGTTCCTC+TGG 0.415396 4_1:-80594971 Msa0576530:CDS
TCCATCAGGGATCCATCGTT+TGG 0.418364 4_1:-80594896 Msa0576530:CDS
CCTCTTCCTGCACCCAAAGT+GGG 0.422177 4_1:-80596719 Msa0576530:CDS
AAAGAAAAGGTTCGGAACTC+TGG 0.425606 4_1:-80594922 Msa0576530:CDS
TTTGAAGGGCCTAATGTTGA+AGG 0.430598 4_1:+80593876 None:intergenic
GCCCTTCAAAATTTATGTAC+AGG 0.435578 4_1:-80593863 Msa0576530:intron
CTTAATAGGGTTATCACTAT+GGG 0.444084 4_1:-80592322 Msa0576530:CDS
CAGAACAAAGAATGTTGGCT+TGG 0.445420 4_1:+80595113 None:intergenic
CCTAAGACTGACCCCACTTT+GGG 0.446599 4_1:+80596707 None:intergenic
GCCTAAGACTGACCCCACTT+TGG 0.446742 4_1:+80596706 None:intergenic
AACATCAGCACCATCTGAAC+TGG 0.452271 4_1:+80592543 None:intergenic
TTCAAAAGCTCGTGAGAGAG+AGG 0.456935 4_1:-80597116 Msa0576530:five_prime_UTR
TGGATTAAGGTTCTCATCGT+AGG 0.457054 4_1:+80597199 None:intergenic
AAAGGGAGGCCAATGTCTCC+TGG 0.459213 4_1:-80592517 Msa0576530:CDS
GAGCGACAGGCTTTGTTCCA+TGG 0.463378 4_1:-80595046 Msa0576530:CDS
GCCGGTAACTGCACCTCTGC+CGG 0.463775 4_1:-80596771 Msa0576530:CDS
CCCACTTTGGGTGCAGGAAG+AGG 0.467373 4_1:+80596719 None:intergenic
TGGTAATTGCTCTTGATTTG+AGG 0.468628 4_1:+80592651 None:intergenic
TGAGCCATCGACGCAGTTGA+GGG 0.478336 4_1:+80592442 None:intergenic
AGCTCCAGTTATAGCAGCAT+TGG 0.488511 4_1:+80594985 None:intergenic
GATGGTGCTGATGTTCCAAA+AGG 0.490293 4_1:-80592535 Msa0576530:CDS
GTTTGGAAAGCTAGGACAAC+AGG 0.490764 4_1:-80594879 Msa0576530:intron
AAAGATGAAGAGGGTGCTGC+AGG 0.491726 4_1:+80593927 None:intergenic
GGTTGTGGGTGTTCCGGCAG+AGG 0.497560 4_1:+80596758 None:intergenic
TCCTCTTCCTGCACCCAAAG+TGG 0.499712 4_1:-80596720 Msa0576530:CDS
CGATCGAATGGGTGAAGGTG+AGG 0.502201 4_1:-80596879 Msa0576530:exon
TTCTGAAAACTGTAAATGCA+TGG 0.504558 4_1:-80595095 Msa0576530:CDS
ACTGACCCCACTTTGGGTGC+AGG 0.507298 4_1:+80596713 None:intergenic
ATATAAATGTAGGAGGAGAC+TGG 0.511871 4_1:-80595217 Msa0576530:intron
TGAAGGAAGTGAAGAGCGAC+AGG 0.515256 4_1:-80595059 Msa0576530:CDS
GACTGGGGAAGTTAAAGTAT+TGG 0.517867 4_1:-80595200 Msa0576530:CDS
ATGAGCCATCGACGCAGTTG+AGG 0.519656 4_1:+80592441 None:intergenic
TCAGTTTGATCATGCGGTTG+TGG 0.520381 4_1:+80597179 None:intergenic
GATCGAATGGGTGAAGGTGA+GGG 0.528000 4_1:-80596878 Msa0576530:exon
AGAGCAATTACCAAACCAAA+AGG 0.531316 4_1:-80592641 Msa0576530:CDS
GCGTTCTAAAGTTGCCTCAA+CGG 0.532916 4_1:+80595998 None:intergenic
GGTGCTGCAGGACCTCTGAC+AGG 0.533479 4_1:+80593939 None:intergenic
GCAGGAAGAGGAGGAAGTGT+CGG 0.537059 4_1:+80596731 None:intergenic
CTCTTCCTGCACCCAAAGTG+GGG 0.540427 4_1:-80596718 Msa0576530:intron
GGAACTCTGGCCGTCCATCA+GGG 0.541188 4_1:-80594909 Msa0576530:CDS
AGATCTATGCAGAGCAAGAG+AGG 0.541580 4_1:-80592372 Msa0576530:CDS
CAATATGGCGTATCTTCAGC+AGG 0.547825 4_1:-80595011 Msa0576530:CDS
GGATTAAGGTTCTCATCGTA+GGG 0.550297 4_1:+80597200 None:intergenic
GCTAAAGTTCCAGGAGACAT+TGG 0.554665 4_1:+80592508 None:intergenic
CCTGTCCCAGTACCTCGTGT+TGG 0.556568 4_1:-80593900 Msa0576530:CDS
AAAATTGCGAGCAGTCCTCA+TGG 0.561710 4_1:-80595954 Msa0576530:CDS
TGGGGCGATCGAATGGGTGA+AGG 0.561905 4_1:-80596884 Msa0576530:exon
TAACAATGTTGACAATGAAG+CGG 0.562048 4_1:-80596033 Msa0576530:CDS
CCTGAAAATTCCAGTTCAGA+TGG 0.562427 4_1:-80592553 Msa0576530:CDS
TATAAATGTAGGAGGAGACT+GGG 0.563902 4_1:-80595216 Msa0576530:intron
GATCCATCGTTTGGAAAGCT+AGG 0.564234 4_1:-80594887 Msa0576530:CDS
CCAACACGAGGTACTGGGAC+AGG 0.566645 4_1:+80593900 None:intergenic
CAAACCAAAAGGAAGCTGAT+GGG 0.567376 4_1:-80592630 Msa0576530:CDS
ATTCCGTTAAGAAGCTTGCT+AGG 0.570445 4_1:-80596823 Msa0576530:CDS
CCAAACCAAAAGGAAGCTGA+TGG 0.575383 4_1:-80592631 Msa0576530:CDS
CAAAGCTCCTTCAGGTGCTG+TGG 0.576488 4_1:+80593729 None:intergenic
AGAGGAGGAAGTGTCGGCGG+TGG 0.576611 4_1:+80596737 None:intergenic
TCACAATTGCCTTATGGACA+AGG 0.579807 4_1:-80592403 Msa0576530:CDS
TTTAGTGCTAGTATCTGGAC+AGG 0.580606 4_1:-80593700 Msa0576530:CDS
TCCAAACGATGGATCCCTGA+TGG 0.585261 4_1:+80594895 None:intergenic
TAGATAAGCACACAGAAGAT+CGG 0.590669 4_1:-80592693 Msa0576530:CDS
AGCCATCGACGCAGTTGAGG+GGG 0.590783 4_1:+80592444 None:intergenic
GACAGGAGACAAAGATGAAG+AGG 0.594341 4_1:+80593917 None:intergenic
AAGGTCCAACACGAGGTACT+GGG 0.595130 4_1:+80593895 None:intergenic
AACGATGGATCCCTGATGGA+CGG 0.596545 4_1:+80594899 None:intergenic
ATGGTGCTGATGTTCCAAAA+GGG 0.600938 4_1:-80592534 Msa0576530:CDS
GAGCCATCGACGCAGTTGAG+GGG 0.602668 4_1:+80592443 None:intergenic
TGTCCTAGCTTTCCAAACGA+TGG 0.604497 4_1:+80594884 None:intergenic
AAACCAAAAGGAAGCTGATG+GGG 0.605517 4_1:-80592629 Msa0576530:CDS
AGTATTGGTAAAGCACAACA+AGG 0.610516 4_1:-80595185 Msa0576530:CDS
AACATTCACAGTACTTCTTG+AGG 0.610779 4_1:+80595137 None:intergenic
TCATGGAACACGTGATAACA+AGG 0.615546 4_1:-80595937 Msa0576530:intron
TCAAAAGCTCGTGAGAGAGA+GGG 0.617804 4_1:-80597115 Msa0576530:five_prime_UTR
GTATTGGTAAAGCACAACAA+GGG 0.619872 4_1:-80595184 Msa0576530:CDS
ACTTTGGGTGCAGGAAGAGG+AGG 0.619897 4_1:+80596722 None:intergenic
AAAGCTCGTGAGAGAGAGGG+AGG 0.625447 4_1:-80597112 Msa0576530:five_prime_UTR
GCGTCGGGGATATATTGCGA+TGG 0.627790 4_1:-80596077 Msa0576530:CDS
GGCAAGACGAGAAGCCGTTG+AGG 0.638829 4_1:-80596012 Msa0576530:CDS
CATACAACCACAGCACCTGA+AGG 0.646661 4_1:-80593736 Msa0576530:CDS
ACAGGAGACAAAGATGAAGA+GGG 0.650680 4_1:+80593918 None:intergenic
GGAAGAGGAGGAAGTGTCGG+CGG 0.650685 4_1:+80596734 None:intergenic
TATCAGGCAAATCCTGTCAG+AGG 0.651141 4_1:-80593951 Msa0576530:intron
TATTGGTAAAGCACAACAAG+GGG 0.652902 4_1:-80595183 Msa0576530:CDS
GTGCTGATGTTCCAAAAGGG+AGG 0.653307 4_1:-80592531 Msa0576530:CDS
AGCTGATGGGGAGAAAGTTG+TGG 0.668913 4_1:-80592617 Msa0576530:CDS
TTGTTATCACGTGTTCCATG+AGG 0.679705 4_1:+80595939 None:intergenic
AATGTTGAAGGTCCAACACG+AGG 0.707406 4_1:+80593888 None:intergenic
TGGTGGTGATGAATAACCAG+AGG 0.718034 4_1:+80594955 None:intergenic
ATAAATGTAGGAGGAGACTG+GGG 0.722595 4_1:-80595215 Msa0576530:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTGTAAATTTTCTA+CGG + chr4_1:80592373-80592392 None:intergenic 10.0%
!! AACAAAAAATTAATATATGT+GGG + chr4_1:80593886-80593905 None:intergenic 10.0%
!!! TCAAATAAAGTTGATTTATT+TGG - chr4_1:80593756-80593775 Msa0576530:CDS 15.0%
!! ACAAAAAATTAATATATGTG+GGG + chr4_1:80593885-80593904 None:intergenic 15.0%
!! GAACAAAAAATTAATATATG+TGG + chr4_1:80593887-80593906 None:intergenic 15.0%
!! AAAAGGAAAAAATGTAAATA+AGG + chr4_1:80593959-80593978 None:intergenic 15.0%
!!! ATTACTTCATTTTAAATTGT+GGG + chr4_1:80594026-80594045 None:intergenic 15.0%
!!! AATTACTTCATTTTAAATTG+TGG + chr4_1:80594027-80594046 None:intergenic 15.0%
!!! TTTTTATTCTTATGTTTCTA+TGG - chr4_1:80594267-80594286 Msa0576530:intron 15.0%
!!! TATTTTTTTTTACTCCTAAT+GGG + chr4_1:80594778-80594797 None:intergenic 15.0%
!!! ATATTTTTTTTTACTCCTAA+TGG + chr4_1:80594779-80594798 None:intergenic 15.0%
!!! TGTTTTATATGAAGAAAATA+TGG + chr4_1:80595302-80595321 None:intergenic 15.0%
!! TCTTATTATAATTGAATGAA+TGG - chr4_1:80595336-80595355 Msa0576530:intron 15.0%
!!! TCAAAATCAAAATATGTTTT+AGG + chr4_1:80596500-80596519 None:intergenic 15.0%
!! AACAATAATCACAACAATTA+GGG + chr4_1:80592554-80592573 None:intergenic 20.0%
!! TAACAATAATCACAACAATT+AGG + chr4_1:80592555-80592574 None:intergenic 20.0%
!!! TTTTTTGTGTGTTGAATTTT+TGG - chr4_1:80592609-80592628 Msa0576530:CDS 20.0%
!!! TTTTTGTGTGTTGAATTTTT+GGG - chr4_1:80592610-80592629 Msa0576530:CDS 20.0%
!! AAATTGAGATTCTTGTTAAT+AGG - chr4_1:80593057-80593076 Msa0576530:intron 20.0%
!! AATTGAGATTCTTGTTAATA+GGG - chr4_1:80593058-80593077 Msa0576530:intron 20.0%
!! TAATTAAGCACTTCAAAAAA+AGG + chr4_1:80593175-80593194 None:intergenic 20.0%
!! AATTAGTGTTTATTTGATTC+AGG - chr4_1:80593190-80593209 Msa0576530:intron 20.0%
!! AAAATGCATCAAACAAAATT+TGG + chr4_1:80593783-80593802 None:intergenic 20.0%
!! AAAAAATTAATATATGTGGG+GGG + chr4_1:80593883-80593902 None:intergenic 20.0%
!! CAAAAAATTAATATATGTGG+GGG + chr4_1:80593884-80593903 None:intergenic 20.0%
!! AAGCAAAAAAAAATTAAAGC+CGG - chr4_1:80594179-80594198 Msa0576530:intron 20.0%
!!! ATTTTTTTTTACTCCTAATG+GGG + chr4_1:80594777-80594796 None:intergenic 20.0%
!!! TATTTTTTTTCATGCTTATC+AGG - chr4_1:80595546-80595565 Msa0576530:intron 20.0%
!!! AAAATTTCTTGAGATTTGTT+TGG + chr4_1:80596055-80596074 None:intergenic 20.0%
!!! AACATATTTTGATTTTGAAG+TGG - chr4_1:80596502-80596521 Msa0576530:intron 20.0%
!!! TGTATTCTTTTGAAGTTTTT+GGG - chr4_1:80596702-80596721 Msa0576530:intron 20.0%
!! ATTAAACATGAGTTTGATAT+TGG + chr4_1:80596777-80596796 None:intergenic 20.0%
!!! GCTTATCTATTAAATTTTTC+TGG + chr4_1:80596809-80596828 None:intergenic 20.0%
!!! AATTCAGAGATTTTCTTAAT+AGG - chr4_1:80597177-80597196 Msa0576530:five_prime_UTR 20.0%
!!! ATTCAGAGATTTTCTTAATA+GGG - chr4_1:80597178-80597197 Msa0576530:five_prime_UTR 20.0%
!! TTTTGTAAATTTTCTACGGT+TGG + chr4_1:80592369-80592388 None:intergenic 25.0%
!! TTTTGTGTGTTGAATTTTTG+GGG - chr4_1:80592611-80592630 Msa0576530:CDS 25.0%
!!! TATTGGTTCAAATTTGATGA+TGG - chr4_1:80593099-80593118 Msa0576530:intron 25.0%
!!! GTTGTGAATTTTTTGTATTG+AGG - chr4_1:80593641-80593660 Msa0576530:intron 25.0%
!!! GATTTGCTTATATTTTGTCA+CGG + chr4_1:80593732-80593751 None:intergenic 25.0%
!! TGCTTATATTTTGTTACAGA+AGG - chr4_1:80593803-80593822 Msa0576530:intron 25.0%
!!! TACTTTGTTTTAGTTCATTG+AGG - chr4_1:80593837-80593856 Msa0576530:intron 25.0%
!! ATTGAGGATTTTTGTTGATA+AGG - chr4_1:80593853-80593872 Msa0576530:intron 25.0%
!!! TTGAGGATTTTTGTTGATAA+GGG - chr4_1:80593854-80593873 Msa0576530:intron 25.0%
!! TTTTTCCTTTTATTAGAAGC+AGG - chr4_1:80593968-80593987 Msa0576530:intron 25.0%
! TTTACAAGTATCTTAACAAC+AGG + chr4_1:80594144-80594163 None:intergenic 25.0%
! ATGGACTTCAATATAAATGT+AGG - chr4_1:80594286-80594305 Msa0576530:intron 25.0%
!!! ATTTTGGAAATTAGGTAAAC+TGG - chr4_1:80594693-80594712 Msa0576530:intron 25.0%
!!! TTTTGGAAATTAGGTAAACT+GGG - chr4_1:80594694-80594713 Msa0576530:intron 25.0%
! ATGCATCTCTCAATTTAATT+GGG + chr4_1:80594803-80594822 None:intergenic 25.0%
! AATGCATCTCTCAATTTAAT+TGG + chr4_1:80594804-80594823 None:intergenic 25.0%
! AATTAGAATAGCATTTCCTT+GGG - chr4_1:80595126-80595145 Msa0576530:CDS 25.0%
!! ACCTGTACATAAATTTTGAA+GGG + chr4_1:80595654-80595673 None:intergenic 25.0%
!! TACCTGTACATAAATTTTGA+AGG + chr4_1:80595655-80595674 None:intergenic 25.0%
! TTCAAAATTTATGTACAGGT+AGG - chr4_1:80595654-80595673 Msa0576530:intron 25.0%
!! CAAATAACACAATTGATGAT+GGG + chr4_1:80595878-80595897 None:intergenic 25.0%
! AATAATTCTGAACCTTACTT+TGG + chr4_1:80596265-80596284 None:intergenic 25.0%
! AAAAGGTTGTATTTACCATT+TGG + chr4_1:80596405-80596424 None:intergenic 25.0%
! TTGAAGTGGAATTAATTCTA+TGG - chr4_1:80596516-80596535 Msa0576530:intron 25.0%
!!! GTGTATTCTTTTGAAGTTTT+TGG - chr4_1:80596701-80596720 Msa0576530:intron 25.0%
! CAATTGAATAGAATAATCGA+AGG + chr4_1:80596734-80596753 None:intergenic 25.0%
! CTTCGATTATTCTATTCAAT+TGG - chr4_1:80596732-80596751 Msa0576530:CDS 25.0%
AAAAGCGAAGTCTAAGTTAT+TGG - chr4_1:80593082-80593101 Msa0576530:intron 30.0%
!!! AATTTGATGATGGCCTTTTT+TGG - chr4_1:80593109-80593128 Msa0576530:intron 30.0%
AGAAGAAAAGTCTCCAAAAA+AGG + chr4_1:80593125-80593144 None:intergenic 30.0%
! ATATTGTGAATGTTTTGCGT+CGG - chr4_1:80593420-80593439 Msa0576530:intron 30.0%
TAACAATGTTGACAATGAAG+CGG - chr4_1:80593480-80593499 Msa0576530:intron 30.0%
AAACGAAAACTAAAATGCAC+TGG + chr4_1:80593936-80593955 None:intergenic 30.0%
ATGTCATAATTCCATACCAT+TGG + chr4_1:80594113-80594132 None:intergenic 30.0%
!! TTTTGAGTAAGCAAAAAGGA+AGG + chr4_1:80594231-80594250 None:intergenic 30.0%
!! GATGTTTTGAGTAAGCAAAA+AGG + chr4_1:80594235-80594254 None:intergenic 30.0%
GACTTCAATATAAATGTAGG+AGG - chr4_1:80594289-80594308 Msa0576530:intron 30.0%
!! GGTGTCATTGTAAAAAATCT+GGG - chr4_1:80594351-80594370 Msa0576530:intron 30.0%
! GTTTTCAGAACAAAGAATGT+TGG + chr4_1:80594408-80594427 None:intergenic 30.0%
! TTCTGAAAACTGTAAATGCA+TGG - chr4_1:80594418-80594437 Msa0576530:intron 30.0%
! ATGGATTGCAAAAACTTTGA+AGG - chr4_1:80594437-80594456 Msa0576530:intron 30.0%
!!! TATTGTTGTTTTGATCTCCA+TGG + chr4_1:80594487-80594506 None:intergenic 30.0%
TGGAGATCAAAACAACAATA+TGG - chr4_1:80594487-80594506 Msa0576530:intron 30.0%
! GTAAAACTTGATAATACTGC+AGG - chr4_1:80594656-80594675 Msa0576530:intron 30.0%
!!! AGGGGTTTATTTTGGAAATT+AGG - chr4_1:80594685-80594704 Msa0576530:intron 30.0%
TTTGGAAATTAGGTAAACTG+GGG - chr4_1:80594695-80594714 Msa0576530:intron 30.0%
!! TTGAGTTGAAATGAACACAT+TGG + chr4_1:80594883-80594902 None:intergenic 30.0%
CAATTAGAATAGCATTTCCT+TGG - chr4_1:80595125-80595144 Msa0576530:CDS 30.0%
! ACGAGAAAAGACTGAATTTT+TGG + chr4_1:80595256-80595275 None:intergenic 30.0%
! AAAAATTCAGTCTTTTCTCG+TGG - chr4_1:80595255-80595274 Msa0576530:intron 30.0%
!!! GAACTAGCAATTTAGCTTTT+GGG + chr4_1:80595445-80595464 None:intergenic 30.0%
AATTTATGTACAGGTAGGAT+TGG - chr4_1:80595659-80595678 Msa0576530:intron 30.0%
! ATTAACTTGATTGCTGTTGA+AGG - chr4_1:80595737-80595756 Msa0576530:intron 30.0%
!! TATACCTGTAAGTGTTTTTG+TGG + chr4_1:80595839-80595858 None:intergenic 30.0%
CAAAAACACTTACAGGTATA+TGG - chr4_1:80595839-80595858 Msa0576530:intron 30.0%
GCAAATAACACAATTGATGA+TGG + chr4_1:80595879-80595898 None:intergenic 30.0%
!! ATACAGTTTTGTGTTTTCGT+CGG - chr4_1:80595912-80595931 Msa0576530:intron 30.0%
! TGAGTGTACTGATATTGATT+TGG - chr4_1:80595947-80595966 Msa0576530:CDS 30.0%
!! GTACTGATATTGATTTGGAA+AGG - chr4_1:80595952-80595971 Msa0576530:CDS 30.0%
! TCTTGAGATTTGTTTGGAAA+GGG + chr4_1:80596049-80596068 None:intergenic 30.0%
! TTCTTGAGATTTGTTTGGAA+AGG + chr4_1:80596050-80596069 None:intergenic 30.0%
TAGCAGCTTAATTTAATGAG+CGG - chr4_1:80596074-80596093 Msa0576530:CDS 30.0%
ACAAAATTTCAGCCAAAGTA+AGG - chr4_1:80596250-80596269 Msa0576530:CDS 30.0%
! TAGGTTTACCAAACATTTTG+AGG + chr4_1:80596544-80596563 None:intergenic 30.0%
! GTTAAACATTGAGGTATCTT+AGG + chr4_1:80596632-80596651 None:intergenic 30.0%
TTTCAGACAGTTAAACATTG+AGG + chr4_1:80596641-80596660 None:intergenic 30.0%
TCTTAATAGGGTTATCACTA+TGG - chr4_1:80597190-80597209 Msa0576530:five_prime_UTR 30.0%
CTTAATAGGGTTATCACTAT+GGG - chr4_1:80597191-80597210 Msa0576530:five_prime_UTR 30.0%
! TCGTTTTCAGTTTGATCATG+CGG + chr4_1:80592343-80592362 None:intergenic 35.0%
TGAGTTTCAGATCCCAAAAA+CGG + chr4_1:80592492-80592511 None:intergenic 35.0%
!!! GAATCCAATTGTGCGTTTTT+TGG + chr4_1:80592674-80592693 None:intergenic 35.0%
TTGTTGTATCATCAACTCTG+TGG - chr4_1:80592972-80592991 Msa0576530:intron 35.0%
AACTCTGTGGTTGAGAAATT+AGG - chr4_1:80592985-80593004 Msa0576530:intron 35.0%
! GACTTTGATTTAGGAGATTC+TGG + chr4_1:80593219-80593238 None:intergenic 35.0%
! TTGGGTCTTGACTTTGATTT+AGG + chr4_1:80593228-80593247 None:intergenic 35.0%
! GCATCTTTTGTCTCAAAGTT+GGG + chr4_1:80593246-80593265 None:intergenic 35.0%
! AGCATCTTTTGTCTCAAAGT+TGG + chr4_1:80593247-80593266 None:intergenic 35.0%
!!! TTGCACTGTTTTTGCTTCTT+TGG + chr4_1:80593273-80593292 None:intergenic 35.0%
! TATTGTGAATGTTTTGCGTC+GGG - chr4_1:80593421-80593440 Msa0576530:intron 35.0%
! GCAGGCTTAACTTTTTGTAA+CGG - chr4_1:80593602-80593621 Msa0576530:intron 35.0%
! GCTTAACTTTTTGTAACGGT+TGG - chr4_1:80593606-80593625 Msa0576530:intron 35.0%
! TTATATTTTGTCACGGAGGA+GGG + chr4_1:80593725-80593744 None:intergenic 35.0%
! TTGCTTATATTTTGTCACGG+AGG + chr4_1:80593729-80593748 None:intergenic 35.0%
! TTCCTTTTATTAGAAGCAGG+AGG - chr4_1:80593971-80593990 Msa0576530:intron 35.0%
ATCCTCCTGCTTCTAATAAA+AGG + chr4_1:80593976-80593995 None:intergenic 35.0%
GATGCAAATCCACTCTTATA+GGG + chr4_1:80594077-80594096 None:intergenic 35.0%
TGATGCAAATCCACTCTTAT+AGG + chr4_1:80594078-80594097 None:intergenic 35.0%
TCATAATTCCATACCATTGG+AGG + chr4_1:80594110-80594129 None:intergenic 35.0%
GTATGGAATTATGACATGAC+AGG - chr4_1:80594116-80594135 Msa0576530:intron 35.0%
! TTTTCCAACACAAGAAATGC+CGG + chr4_1:80594201-80594220 None:intergenic 35.0%
ATATAAATGTAGGAGGAGAC+TGG - chr4_1:80594296-80594315 Msa0576530:intron 35.0%
TATAAATGTAGGAGGAGACT+GGG - chr4_1:80594297-80594316 Msa0576530:intron 35.0%
!! AGTATTGGTAAAGCACAACA+AGG - chr4_1:80594328-80594347 Msa0576530:intron 35.0%
! GTATTGGTAAAGCACAACAA+GGG - chr4_1:80594329-80594348 Msa0576530:intron 35.0%
TATTGGTAAAGCACAACAAG+GGG - chr4_1:80594330-80594349 Msa0576530:intron 35.0%
!! GGGTGTCATTGTAAAAAATC+TGG - chr4_1:80594350-80594369 Msa0576530:intron 35.0%
AACATTCACAGTACTTCTTG+AGG + chr4_1:80594379-80594398 None:intergenic 35.0%
AGCGAGAAAAAGAAAAGGTT+CGG - chr4_1:80594583-80594602 Msa0576530:intron 35.0%
AATTAGGTAAACTGGGGAAA+TGG - chr4_1:80594701-80594720 Msa0576530:intron 35.0%
TCATGTAACATTTCCCCATT+AGG - chr4_1:80594761-80594780 Msa0576530:intron 35.0%
GATATATGCTTCCCTTGATT+TGG - chr4_1:80594856-80594875 Msa0576530:intron 35.0%
AACACATTGGACCAAATCAA+GGG + chr4_1:80594870-80594889 None:intergenic 35.0%
GTCTCAAAACACTATCCTAT+TGG - chr4_1:80594924-80594943 Msa0576530:CDS 35.0%
CACTATCCTATTGGAAAGAA+AGG - chr4_1:80594933-80594952 Msa0576530:CDS 35.0%
ATGAAGCCTTTCTTTCCAAT+AGG + chr4_1:80594942-80594961 None:intergenic 35.0%
! TTTTCATTGAGAACCAGTAG+GGG + chr4_1:80595190-80595209 None:intergenic 35.0%
! GTTTTCATTGAGAACCAGTA+GGG + chr4_1:80595191-80595210 None:intergenic 35.0%
AAATCAAGTATGTGACTGTG+AGG - chr4_1:80595363-80595382 Msa0576530:intron 35.0%
!!! CGAACTAGCAATTTAGCTTT+TGG + chr4_1:80595446-80595465 None:intergenic 35.0%
GCCCTTCAAAATTTATGTAC+AGG - chr4_1:80595650-80595669 Msa0576530:intron 35.0%
!!! TCTGTTTTAGTGCTAGTATC+TGG - chr4_1:80595808-80595827 Msa0576530:intron 35.0%
AAGTTTGGAAAGGGAAAAAG+CGG + chr4_1:80596004-80596023 None:intergenic 35.0%
AATGTGGAGAAGTTTGGAAA+GGG + chr4_1:80596013-80596032 None:intergenic 35.0%
AAATGTGGAGAAGTTTGGAA+AGG + chr4_1:80596014-80596033 None:intergenic 35.0%
TTGTTTGGAAAGGGAAAAAG+CGG + chr4_1:80596040-80596059 None:intergenic 35.0%
AGCAGCTTAATTTAATGAGC+GGG - chr4_1:80596075-80596094 Msa0576530:CDS 35.0%
GAATTATTCACCAAGCTCAA+TGG - chr4_1:80596277-80596296 Msa0576530:CDS 35.0%
ATTTGTCAATCCATTGAGCT+TGG + chr4_1:80596290-80596309 None:intergenic 35.0%
!! AAGCTCAATGGATTGACAAA+TGG - chr4_1:80596289-80596308 Msa0576530:CDS 35.0%
!! TGAGAGTTTGATTTGCCAAA+TGG - chr4_1:80596387-80596406 Msa0576530:intron 35.0%
CTTGTCATTAGATAACTGTC+TGG - chr4_1:80596581-80596600 Msa0576530:intron 35.0%
! GTCTGGCGAATTTGAAATTT+AGG - chr4_1:80596598-80596617 Msa0576530:intron 35.0%
! GGCGAATTTGAAATTTAGGA+TGG - chr4_1:80596602-80596621 Msa0576530:intron 35.0%
TAGATAAGCACACAGAAGAT+CGG - chr4_1:80596820-80596839 Msa0576530:CDS 35.0%
! TGGTAATTGCTCTTGATTTG+AGG + chr4_1:80596865-80596884 None:intergenic 35.0%
AGAGCAATTACCAAACCAAA+AGG - chr4_1:80596872-80596891 Msa0576530:CDS 35.0%
ACATCTTCACAATTGCCTTA+TGG - chr4_1:80597104-80597123 Msa0576530:five_prime_UTR 35.0%
ATCACTATGGGCGAAATAAA+TGG - chr4_1:80597203-80597222 Msa0576530:five_prime_UTR 35.0%
GGATTAAGGTTCTCATCGTA+GGG + chr4_1:80592316-80592335 None:intergenic 40.0%
TGGATTAAGGTTCTCATCGT+AGG + chr4_1:80592317-80592336 None:intergenic 40.0%
!!! AATTTTTGGGGCGATCGAAT+GGG - chr4_1:80592623-80592642 Msa0576530:CDS 40.0%
!!! CCAATTGTGCGTTTTTTGGA+GGG + chr4_1:80592670-80592689 None:intergenic 40.0%
!!! TCCAATTGTGCGTTTTTTGG+AGG + chr4_1:80592671-80592690 None:intergenic 40.0%
! ATTCCGTTAAGAAGCTTGCT+AGG - chr4_1:80592690-80592709 Msa0576530:CDS 40.0%
CAATTGCAGCCAATAAGTTC+CGG + chr4_1:80593362-80593381 None:intergenic 40.0%
! ATTGTGAATGTTTTGCGTCG+GGG - chr4_1:80593422-80593441 Msa0576530:intron 40.0%
AACGCAATCCAAATGCCTTT+AGG - chr4_1:80593533-80593552 Msa0576530:intron 40.0%
!!! ATTTTCGGCCTAAAGGCATT+TGG + chr4_1:80593544-80593563 None:intergenic 40.0%
TTGTTATCACGTGTTCCATG+AGG + chr4_1:80593577-80593596 None:intergenic 40.0%
TCATGGAACACGTGATAACA+AGG - chr4_1:80593576-80593595 Msa0576530:intron 40.0%
! CTTATATTTTGTCACGGAGG+AGG + chr4_1:80593726-80593745 None:intergenic 40.0%
! AGTGGATTTGCATCAGAAGT+TGG - chr4_1:80594083-80594102 Msa0576530:intron 40.0%
GTGGATTTGCATCAGAAGTT+GGG - chr4_1:80594084-80594103 Msa0576530:intron 40.0%
ATAAATGTAGGAGGAGACTG+GGG - chr4_1:80594298-80594317 Msa0576530:intron 40.0%
GACTGGGGAAGTTAAAGTAT+TGG - chr4_1:80594313-80594332 Msa0576530:intron 40.0%
! CAGAACAAAGAATGTTGGCT+TGG + chr4_1:80594403-80594422 None:intergenic 40.0%
! TTTCTTTTTCTCGCTACTGG+TGG + chr4_1:80594578-80594597 None:intergenic 40.0%
! CCTTTTCTTTTTCTCGCTAC+TGG + chr4_1:80594581-80594600 None:intergenic 40.0%
CCAGTAGCGAGAAAAAGAAA+AGG - chr4_1:80594578-80594597 Msa0576530:intron 40.0%
AAAGAAAAGGTTCGGAACTC+TGG - chr4_1:80594591-80594610 Msa0576530:intron 40.0%
ATAATACTGCAGGCAGTTCA+GGG - chr4_1:80594666-80594685 Msa0576530:intron 40.0%
CTGCAAAATGCTGTCTCAAT+TGG + chr4_1:80594741-80594760 None:intergenic 40.0%
GAACACATTGGACCAAATCA+AGG + chr4_1:80594871-80594890 None:intergenic 40.0%
CTTCCATCTTTGCTCAATGT+GGG - chr4_1:80594986-80595005 Msa0576530:CDS 40.0%
TATCCCACATTGAGCAAAGA+TGG + chr4_1:80594992-80595011 None:intergenic 40.0%
! CCATCGCAAACTCAAACTTT+TGG + chr4_1:80595032-80595051 None:intergenic 40.0%
! CCAAAAGTTTGAGTTTGCGA+TGG - chr4_1:80595029-80595048 Msa0576530:CDS 40.0%
GTGAATTCCACTATGAGTGT+CGG + chr4_1:80595069-80595088 None:intergenic 40.0%
GGAATTCACTCTAATCCCTT+TGG - chr4_1:80595080-80595099 Msa0576530:CDS 40.0%
AACCTTAAACCTGCACCAAA+GGG + chr4_1:80595098-80595117 None:intergenic 40.0%
AAACCTTAAACCTGCACCAA+AGG + chr4_1:80595099-80595118 None:intergenic 40.0%
TCCTTGGGTTTCTCATTCTT+TGG - chr4_1:80595141-80595160 Msa0576530:CDS 40.0%
ACCAAAGAATGAGAAACCCA+AGG + chr4_1:80595145-80595164 None:intergenic 40.0%
TTTCATTGAGAACCAGTAGG+GGG + chr4_1:80595189-80595208 None:intergenic 40.0%
! CGTTTTCATTGAGAACCAGT+AGG + chr4_1:80595192-80595211 None:intergenic 40.0%
TACCACGATAAGTTCACTTC+TGG - chr4_1:80595404-80595423 Msa0576530:intron 40.0%
ACAGGAGACAAAGATGAAGA+GGG + chr4_1:80595598-80595617 None:intergenic 40.0%
TTTGAAGGGCCTAATGTTGA+AGG + chr4_1:80595640-80595659 None:intergenic 40.0%
TTTAGTGCTAGTATCTGGAC+AGG - chr4_1:80595813-80595832 Msa0576530:intron 40.0%
AGTTTGGAAAGGGAAAAAGC+GGG + chr4_1:80596003-80596022 None:intergenic 40.0%
TGTTTGGAAAGGGAAAAAGC+GGG + chr4_1:80596039-80596058 None:intergenic 40.0%
CGTTTGACTACACGTAAACA+AGG + chr4_1:80596363-80596382 None:intergenic 40.0%
CAAACCAAAAGGAAGCTGAT+GGG - chr4_1:80596883-80596902 Msa0576530:exon 40.0%
AAACCAAAAGGAAGCTGATG+GGG - chr4_1:80596884-80596903 Msa0576530:exon 40.0%
!!! CAGGACTGGTTTTATCAGTT+TGG + chr4_1:80596944-80596963 None:intergenic 40.0%
!! TGAACTGGAATTTTCAGGAC+TGG + chr4_1:80596958-80596977 None:intergenic 40.0%
! CCATCTGAACTGGAATTTTC+AGG + chr4_1:80596963-80596982 None:intergenic 40.0%
CCTGAAAATTCCAGTTCAGA+TGG - chr4_1:80596960-80596979 Msa0576530:five_prime_UTR 40.0%
!! ATGGTGCTGATGTTCCAAAA+GGG - chr4_1:80596979-80596998 Msa0576530:five_prime_UTR 40.0%
CACATCAATGCTAAAGTTCC+AGG + chr4_1:80597017-80597036 None:intergenic 40.0%
TCACAATTGCCTTATGGACA+AGG - chr4_1:80597110-80597129 Msa0576530:five_prime_UTR 40.0%
TCTTTCGTTCCTTGTCCATA+AGG + chr4_1:80597122-80597141 None:intergenic 40.0%
! GATCATGCGGTTGTGGATTA+AGG + chr4_1:80592330-80592349 None:intergenic 45.0%
TCAGTTTGATCATGCGGTTG+TGG + chr4_1:80592337-80592356 None:intergenic 45.0%
TTCAAAAGCTCGTGAGAGAG+AGG - chr4_1:80592397-80592416 Msa0576530:CDS 45.0%
TCAAAAGCTCGTGAGAGAGA+GGG - chr4_1:80592398-80592417 Msa0576530:CDS 45.0%
!!! GAATTTTTGGGGCGATCGAA+TGG - chr4_1:80592622-80592641 Msa0576530:CDS 45.0%
CCCTCCAAAAAACGCACAAT+TGG - chr4_1:80592667-80592686 Msa0576530:CDS 45.0%
CTGCCTAGCAAGCTTCTTAA+CGG + chr4_1:80592696-80592715 None:intergenic 45.0%
! CAGCTCGATTTCAACGCTTT+TGG - chr4_1:80592713-80592732 Msa0576530:intron 45.0%
! CTCGATTTCAACGCTTTTGG+TGG - chr4_1:80592716-80592735 Msa0576530:intron 45.0%
! CGGAACTTATTGGCTGCAAT+TGG - chr4_1:80593360-80593379 Msa0576530:intron 45.0%
!! GCGTTCTAAAGTTGCCTCAA+CGG + chr4_1:80593518-80593537 None:intergenic 45.0%
! TGAGGACTGCTCGCAATTTT+CGG + chr4_1:80593559-80593578 None:intergenic 45.0%
AAAATTGCGAGCAGTCCTCA+TGG - chr4_1:80593559-80593578 Msa0576530:intron 45.0%
CACGTGATAACAAGGTATGC+AGG - chr4_1:80593584-80593603 Msa0576530:intron 45.0%
AACAGACAATGATGCGCTAG+CGG + chr4_1:80593699-80593718 None:intergenic 45.0%
AATCCACTCTTATAGGGACG+TGG + chr4_1:80594071-80594090 None:intergenic 45.0%
AAAGCCGGCATTTCTTGTGT+TGG - chr4_1:80594194-80594213 Msa0576530:intron 45.0%
CAATATGGCGTATCTTCAGC+AGG - chr4_1:80594502-80594521 Msa0576530:intron 45.0%
AGCTCCAGTTATAGCAGCAT+TGG + chr4_1:80594531-80594550 None:intergenic 45.0%
GCTGCTATAACTGGAGCTAT+TGG - chr4_1:80594533-80594552 Msa0576530:intron 45.0%
! TGGTGGTGATGAATAACCAG+AGG + chr4_1:80594561-80594580 None:intergenic 45.0%
GATCCATCGTTTGGAAAGCT+AGG - chr4_1:80594626-80594645 Msa0576530:intron 45.0%
! TGTCCTAGCTTTCCAAACGA+TGG + chr4_1:80594632-80594651 None:intergenic 45.0%
GTTTGGAAAGCTAGGACAAC+AGG - chr4_1:80594634-80594653 Msa0576530:intron 45.0%
GATAATACTGCAGGCAGTTC+AGG - chr4_1:80594665-80594684 Msa0576530:intron 45.0%
TAATACTGCAGGCAGTTCAG+GGG - chr4_1:80594667-80594686 Msa0576530:intron 45.0%
! GGCAGTTCAGGGGTTTATTT+TGG - chr4_1:80594677-80594696 Msa0576530:intron 45.0%
!! GACAGTCTAGCTCTCTTCAT+GGG + chr4_1:80594907-80594926 None:intergenic 45.0%
!! AGACAGTCTAGCTCTCTTCA+TGG + chr4_1:80594908-80594927 None:intergenic 45.0%
GCTTCCATCTTTGCTCAATG+TGG - chr4_1:80594985-80595004 Msa0576530:CDS 45.0%
! ATCCCTTTGGTGCAGGTTTA+AGG - chr4_1:80595093-80595112 Msa0576530:CDS 45.0%
TTCATTGAGAACCAGTAGGG+GGG + chr4_1:80595188-80595207 None:intergenic 45.0%
GACCAGAAGTGAACTTATCG+TGG + chr4_1:80595409-80595428 None:intergenic 45.0%
TATCAGGCAAATCCTGTCAG+AGG - chr4_1:80595562-80595581 Msa0576530:intron 45.0%
GACAGGAGACAAAGATGAAG+AGG + chr4_1:80595599-80595618 None:intergenic 45.0%
AATGTTGAAGGTCCAACACG+AGG + chr4_1:80595628-80595647 None:intergenic 45.0%
CGTGTTGGACCTTCAACATT+AGG - chr4_1:80595628-80595647 Msa0576530:intron 45.0%
AAACAGAGCAAAGCTCCTTC+AGG + chr4_1:80595795-80595814 None:intergenic 45.0%
CAGGCCACAAAAACACTTAC+AGG - chr4_1:80595832-80595851 Msa0576530:intron 45.0%
GTTTGGAAAGGGAAAAAGCG+GGG + chr4_1:80596002-80596021 None:intergenic 45.0%
GGGGTAAATGTGGAGAAGTT+TGG + chr4_1:80596019-80596038 None:intergenic 45.0%
GTTTGGAAAGGGAAAAAGCG+GGG + chr4_1:80596002-80596021 None:intergenic 45.0%
! TGAGCGGGCATTGTCTATTA+TGG - chr4_1:80596090-80596109 Msa0576530:CDS 45.0%
! GCTGCTGTTTACAGCTCAAA+AGG + chr4_1:80596422-80596441 None:intergenic 45.0%
TAAACAGCAGCTTCCTCTGT+AGG - chr4_1:80596431-80596450 Msa0576530:intron 45.0%
!! CTTTCCTGCTTTTCCTACAG+AGG + chr4_1:80596447-80596466 None:intergenic 45.0%
CTCTGTAGGAAAAGCAGGAA+AGG - chr4_1:80596445-80596464 Msa0576530:intron 45.0%
CTATGGCGCCTCAAAATGTT+TGG - chr4_1:80596533-80596552 Msa0576530:intron 45.0%
GACAAGCAATCCTGACAACT+GGG + chr4_1:80596567-80596586 None:intergenic 45.0%
TGACAAGCAATCCTGACAAC+TGG + chr4_1:80596568-80596587 None:intergenic 45.0%
!! CCATCAGCTTCCTTTTGGTT+TGG + chr4_1:80596885-80596904 None:intergenic 45.0%
CCAAACCAAAAGGAAGCTGA+TGG - chr4_1:80596882-80596901 Msa0576530:exon 45.0%
AACATCAGCACCATCTGAAC+TGG + chr4_1:80596973-80596992 None:intergenic 45.0%
!! GATGGTGCTGATGTTCCAAA+AGG - chr4_1:80596978-80596997 Msa0576530:five_prime_UTR 45.0%
GCTAAAGTTCCAGGAGACAT+TGG + chr4_1:80597008-80597027 None:intergenic 45.0%
AGATCTATGCAGAGCAAGAG+AGG - chr4_1:80597141-80597160 Msa0576530:five_prime_UTR 45.0%
GATCGAATGGGTGAAGGTGA+GGG - chr4_1:80592635-80592654 Msa0576530:CDS 50.0%
CCTAAGACTGACCCCACTTT+GGG + chr4_1:80592809-80592828 None:intergenic 50.0%
GCGCAACAACAAGTGCATAG+AGG + chr4_1:80593334-80593353 None:intergenic 50.0%
!! ACTTGTTGTTGCGCCTTTGC+CGG - chr4_1:80593340-80593359 Msa0576530:intron 50.0%
CAGCCAATAAGTTCCGGCAA+AGG + chr4_1:80593356-80593375 None:intergenic 50.0%
! GCTCGCAATTTTCGGCCTAA+AGG + chr4_1:80593551-80593570 None:intergenic 50.0%
CAACCACGTCCCTATAAGAG+TGG - chr4_1:80594065-80594084 Msa0576530:intron 50.0%
ATCAGAAGTTGGGCCTCCAA+TGG - chr4_1:80594094-80594113 Msa0576530:intron 50.0%
AAGTTGGGCCTCCAATGGTA+TGG - chr4_1:80594099-80594118 Msa0576530:intron 50.0%
TGAAGGAAGTGAAGAGCGAC+AGG - chr4_1:80594454-80594473 Msa0576530:intron 50.0%
GCAGCCAATGCTGCTATAAC+TGG - chr4_1:80594524-80594543 Msa0576530:intron 50.0%
!! ACTGGAGCTATTGGTTCCTC+TGG - chr4_1:80594542-80594561 Msa0576530:intron 50.0%
AACGATGGATCCCTGATGGA+CGG + chr4_1:80594617-80594636 None:intergenic 50.0%
TCCATCAGGGATCCATCGTT+TGG - chr4_1:80594617-80594636 Msa0576530:intron 50.0%
TCCAAACGATGGATCCCTGA+TGG + chr4_1:80594621-80594640 None:intergenic 50.0%
! CACTCTAATCCCTTTGGTGC+AGG - chr4_1:80595086-80595105 Msa0576530:CDS 50.0%
TCATTGAGAACCAGTAGGGG+GGG + chr4_1:80595187-80595206 None:intergenic 50.0%
GCTTCAGTCGTCGTAGCAAA+AGG + chr4_1:80595215-80595234 None:intergenic 50.0%
CAAGTATGTGACTGTGAGGC+TGG - chr4_1:80595367-80595386 Msa0576530:intron 50.0%
AAGCTTCCTGCAGTTGAGAG+TGG - chr4_1:80595469-80595488 Msa0576530:intron 50.0%
TAGCTTCCACTCTCAACTGC+AGG + chr4_1:80595478-80595497 None:intergenic 50.0%
!! AAAGATGAAGAGGGTGCTGC+AGG + chr4_1:80595589-80595608 None:intergenic 50.0%
! AAGGTCCAACACGAGGTACT+GGG + chr4_1:80595621-80595640 None:intergenic 50.0%
CATACAACCACAGCACCTGA+AGG - chr4_1:80595777-80595796 Msa0576530:intron 50.0%
GGGAAAAAGCGGGGTAAATG+TGG + chr4_1:80595993-80596012 None:intergenic 50.0%
GGGAAAAAGCGGGGTAAATG+TGG + chr4_1:80595993-80596012 None:intergenic 50.0%
GCTTCCTCTGTAGGAAAAGC+AGG - chr4_1:80596440-80596459 Msa0576530:intron 50.0%
GGTAAACCTACCCAGTTGTC+AGG - chr4_1:80596554-80596573 Msa0576530:intron 50.0%
AGCAATCCTGACAACTGGGT+AGG + chr4_1:80596563-80596582 None:intergenic 50.0%
! TCTCCCCATCAGCTTCCTTT+TGG + chr4_1:80596890-80596909 None:intergenic 50.0%
AGCTGATGGGGAGAAAGTTG+TGG - chr4_1:80596896-80596915 Msa0576530:five_prime_UTR 50.0%
! GTGCTGATGTTCCAAAAGGG+AGG - chr4_1:80596982-80597001 Msa0576530:five_prime_UTR 50.0%
AAAGCTCGTGAGAGAGAGGG+AGG - chr4_1:80592401-80592420 Msa0576530:CDS 55.0%
!! AAAGTCCCTCGCGCCGTTTT+TGG - chr4_1:80592476-80592495 Msa0576530:CDS 55.0%
!!! AAGTCCCTCGCGCCGTTTTT+GGG - chr4_1:80592477-80592496 Msa0576530:CDS 55.0%
AGATCCCAAAAACGGCGCGA+GGG + chr4_1:80592484-80592503 None:intergenic 55.0%
CGATCGAATGGGTGAAGGTG+AGG - chr4_1:80592634-80592653 Msa0576530:CDS 55.0%
! GCAGGAAGAGGAGGAAGTGT+CGG + chr4_1:80592785-80592804 None:intergenic 55.0%
ACTTTGGGTGCAGGAAGAGG+AGG + chr4_1:80592794-80592813 None:intergenic 55.0%
TCCTCTTCCTGCACCCAAAG+TGG - chr4_1:80592793-80592812 Msa0576530:intron 55.0%
CCTCTTCCTGCACCCAAAGT+GGG - chr4_1:80592794-80592813 Msa0576530:intron 55.0%
CTCTTCCTGCACCCAAAGTG+GGG - chr4_1:80592795-80592814 Msa0576530:intron 55.0%
CCCAAAGTGGGGTCAGTCTT+AGG - chr4_1:80592806-80592825 Msa0576530:intron 55.0%
GCCTAAGACTGACCCCACTT+TGG + chr4_1:80592810-80592829 None:intergenic 55.0%
GCGCCTTTGCCGGAACTTAT+TGG - chr4_1:80593350-80593369 Msa0576530:intron 55.0%
GCGTCGGGGATATATTGCGA+TGG - chr4_1:80593436-80593455 Msa0576530:intron 55.0%
!! GAGCGACAGGCTTTGTTCCA+TGG - chr4_1:80594467-80594486 Msa0576530:intron 55.0%
GAGTTTGCGATGGCCCATTC+TGG - chr4_1:80595039-80595058 Msa0576530:CDS 55.0%
!! GAGTGTCGGACAGCCAGAAT+GGG + chr4_1:80595055-80595074 None:intergenic 55.0%
!! TGAGTGTCGGACAGCCAGAA+TGG + chr4_1:80595056-80595075 None:intergenic 55.0%
TGGCTGTCCGACACTCATAG+TGG - chr4_1:80595059-80595078 Msa0576530:CDS 55.0%
CATTGAGAACCAGTAGGGGG+GGG + chr4_1:80595186-80595205 None:intergenic 55.0%
GAAGGTCCAACACGAGGTAC+TGG + chr4_1:80595622-80595641 None:intergenic 55.0%
! CAAAGCTCCTTCAGGTGCTG+TGG + chr4_1:80595787-80595806 None:intergenic 55.0%
!! GGAGACATTGGCCTCCCTTT+TGG + chr4_1:80596996-80597015 None:intergenic 55.0%
AAAGGGAGGCCAATGTCTCC+TGG - chr4_1:80596996-80597015 Msa0576530:five_prime_UTR 55.0%
TGAGCCATCGACGCAGTTGA+GGG + chr4_1:80597074-80597093 None:intergenic 55.0%
ATGAGCCATCGACGCAGTTG+AGG + chr4_1:80597075-80597094 None:intergenic 55.0%
CAGATCCCAAAAACGGCGCG+AGG + chr4_1:80592485-80592504 None:intergenic 60.0%
TGGGGCGATCGAATGGGTGA+AGG - chr4_1:80592629-80592648 Msa0576530:CDS 60.0%
!! CAACGCTTTTGGTGGCACGC+CGG - chr4_1:80592724-80592743 Msa0576530:intron 60.0%
! TCCGGCAGAGGTGCAGTTAC+CGG + chr4_1:80592746-80592765 None:intergenic 60.0%
!! GAAGTGTCGGCGGTGGTTGT+GGG + chr4_1:80592772-80592791 None:intergenic 60.0%
!! GGAAGAGGAGGAAGTGTCGG+CGG + chr4_1:80592782-80592801 None:intergenic 60.0%
CCCACTTTGGGTGCAGGAAG+AGG + chr4_1:80592797-80592816 None:intergenic 60.0%
ACTGACCCCACTTTGGGTGC+AGG + chr4_1:80592803-80592822 None:intergenic 60.0%
GGCAAGACGAGAAGCCGTTG+AGG - chr4_1:80593501-80593520 Msa0576530:intron 60.0%
GGAACTCTGGCCGTCCATCA+GGG - chr4_1:80594604-80594623 Msa0576530:intron 60.0%
!! CCAACACGAGGTACTGGGAC+AGG + chr4_1:80595616-80595635 None:intergenic 60.0%
CCTGTCCCAGTACCTCGTGT+TGG - chr4_1:80595613-80595632 Msa0576530:intron 60.0%
AGCCATCGACGCAGTTGAGG+GGG + chr4_1:80597072-80597091 None:intergenic 60.0%
GAGCCATCGACGCAGTTGAG+GGG + chr4_1:80597073-80597092 None:intergenic 60.0%
GCCGGTAACTGCACCTCTGC+CGG - chr4_1:80592742-80592761 Msa0576530:intron 65.0%
GGTTGTGGGTGTTCCGGCAG+AGG + chr4_1:80592758-80592777 None:intergenic 65.0%
GGCGGTGGTTGTGGGTGTTC+CGG + chr4_1:80592764-80592783 None:intergenic 65.0%
!! GGAAGTGTCGGCGGTGGTTG+TGG + chr4_1:80592773-80592792 None:intergenic 65.0%
!! AGAGGAGGAAGTGTCGGCGG+TGG + chr4_1:80592779-80592798 None:intergenic 65.0%
CGGAACTCTGGCCGTCCATC+AGG - chr4_1:80594603-80594622 Msa0576530:intron 65.0%
AGAACCAGTAGGGGGGGGCT+AGG + chr4_1:80595181-80595200 None:intergenic 65.0%
! GGTGCTGCAGGACCTCTGAC+AGG + chr4_1:80595577-80595596 None:intergenic 65.0%
TGCCCCCTCAACTGCGTCGA+TGG - chr4_1:80597067-80597086 Msa0576530:five_prime_UTR 65.0%
GAAGCCTAGCCCCCCCCTAC+TGG - chr4_1:80595174-80595193 Msa0576530:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80592303 80597232 80592303 ID=Msa0576530;Name=Msa0576530
chr4_1 mRNA 80592303 80597232 80592303 ID=Msa0576530-mRNA-1;Parent=Msa0576530;Name=Msa0576530-mRNA-1;_AED=0.17;_eAED=0.17;_QI=338|1|0.85|1|1|1|7|0|478
chr4_1 exon 80592303 80592730 80592303 ID=Msa0576530-mRNA-1:exon:28909;Parent=Msa0576530-mRNA-1
chr4_1 exon 80593682 80593776 80593682 ID=Msa0576530-mRNA-1:exon:28908;Parent=Msa0576530-mRNA-1
chr4_1 exon 80593864 80593967 80593864 ID=Msa0576530-mRNA-1:exon:28907;Parent=Msa0576530-mRNA-1
chr4_1 exon 80594880 80595227 80594880 ID=Msa0576530-mRNA-1:exon:28906;Parent=Msa0576530-mRNA-1
chr4_1 exon 80595938 80596115 80595938 ID=Msa0576530-mRNA-1:exon:28905;Parent=Msa0576530-mRNA-1
chr4_1 exon 80596216 80596323 80596216 ID=Msa0576530-mRNA-1:exon:28904;Parent=Msa0576530-mRNA-1
chr4_1 exon 80596719 80597232 80596719 ID=Msa0576530-mRNA-1:exon:28903;Parent=Msa0576530-mRNA-1
chr4_1 five_prime_UTR 80596895 80597232 80596895 ID=Msa0576530-mRNA-1:five_prime_utr;Parent=Msa0576530-mRNA-1
chr4_1 CDS 80596719 80596894 80596719 ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1
chr4_1 CDS 80596216 80596323 80596216 ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1
chr4_1 CDS 80595938 80596115 80595938 ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1
chr4_1 CDS 80594880 80595227 80594880 ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1
chr4_1 CDS 80593864 80593967 80593864 ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1
chr4_1 CDS 80593682 80593776 80593682 ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1
chr4_1 CDS 80592303 80592730 80592303 ID=Msa0576530-mRNA-1:cds;Parent=Msa0576530-mRNA-1
Gene Sequence

>Msa0576530

ATGGGTGAAGGTGAGGGTAGTAATATCCCTCCAAAAAACGCACAATTGGATTCCGTTAAGAAGCTTGCTAGGCAGCTCGATTTCAACGCTTTTGGTGGCACGCCGGTAACTGCACCTCTGCCGGAACACCCACAACCACCGCCGACACTTCCTCCTCTTCCTGCACCCAAAGTGGGGAAACCAGAATCTCCTAAATCAAAGTCAAGACCCAACTTTGAGACAAAAGATGCTACTCCAAAGAAGCAAAAACAGTGCAATTGTAAACATTCAAGATGCTTAAAGCTATATTGTGAATGTTTTGCGTCGGGGATATATTGCGATGGTTGCAACTGTGTAAATTGTTTTAACAATGTTGACAATGAAGCGGCAAGACGAGAAGCCGTTGAGGCAACTTTAGAACGCAATCCAAATGCCTTTAGGCCGAAAATTGCGAGCAGTCCTCATGGAACACGTGATAACAAGGAGGAGACTGGGGAAGTTAAAGTATTGGTAAAGCACAACAAGGGGTGTCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGTTTCCAAGCCAACATTCTTTGTTCTGAAAACTGTAAATGCATGGATTGCAAAAACTTTGAAGGAAGTGAAGAGCGACAGGCTTTGTTCCATGGAGATCAAAACAACAATATGGCGTATCTTCAGCAGGCAGCCAATGCTGCTATAACTGGAGCTATTGGTTCCTCTGGTTATTCATCACCACCAGTAGCGAGAAAAAGAAAAGGTTCGGAACTCTGGCCGTCCATCAGGGATCCATCGTTTGGAAAGCTAGGACAACAGGCAAATCCTGTCAGAGGTCCTGCAGCACCCTCTTCATCTTTGTCTCCTGTCCCAGTACCTCGTGTTGGACCTTCAACATTAGGCCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAGCTTTGCTCTGTTTTAGTGCTAGTATCTGGACAGGCCACAAAAACACTTACAGACCAGAAAAATTTAATAGATAAGCACACAGAAGATCGGACAGAAACTTCTCTTGCTTCCTCAAATCAAGAGCAATTACCAAACCAAAAGGAAGCTGATGGGGAGAAAGTTGTGGCTGATGATTGTTCGAGTGCAAACCAAACTGATAAAACCAGTCCTGAAAATTCCAGTTCAGATGGTGCTGATGTTCCAAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGTGACGAGCAAGATACAATGTTCATGACTGCTGCCCCCTCAACTGCGTCGATGGCTCATGCTTGCAACACATCTTCACAATTGCCTTATGGACAAGGAACGAAAGAGATCTATGCAGAGCAAGAGAGGATCGTATTGACGAAATTCAGAGATTTTCTTAATAGGGTTATCACTATGGGCGAAATAAATGGCAAGTGA

Protein sequence

>Msa0576530

MGEGEGSNIPPKNAQLDSVKKLARQLDFNAFGGTPVTAPLPEHPQPPPTLPPLPAPKVGKPESPKSKSRPNFETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDNKEETGEVKVLVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAYLQQAANAAITGAIGSSGYSSPPVARKRKGSELWPSIRDPSFGKLGQQANPVRGPAAPSSSLSPVPVPRVGPSTLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQATKTLTDQKNLIDKHTEDRTETSLASSNQEQLPNQKEADGEKVVADDCSSANQTDKTSPENSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAAPSTASMAHACNTSSQLPYGQGTKEIYAEQERIVLTKFRDFLNRVITMGEINGK*