AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1425790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425790 MtrunA17_Chr4g0059421 99.130 115 1 0 1 115 1 115 1.29e-80 231
Msa1425790 MtrunA17_Chr8g0364311 56.364 110 44 1 6 115 7 112 1.52e-38 125
Msa1425790 MtrunA17_Chr3g0142671 47.826 115 48 3 1 115 1 103 4.53e-28 98.6
Msa1425790 MtrunA17_Chr1g0156601 46.957 115 47 3 1 115 1 101 7.41e-27 95.5
Msa1425790 MtrunA17_Chr6g0451481 72.131 61 17 0 55 115 159 219 4.75e-25 94.4
Msa1425790 MtrunA17_Chr1g0156621 63.636 66 23 1 50 115 36 100 7.49e-23 85.1
Msa1425790 MtrunA17_Chr8g0371941 62.121 66 24 1 50 115 39 103 1.17e-21 82.4
Msa1425790 MtrunA17_Chr1g0200531 50.000 76 36 2 41 115 26 100 2.19e-19 76.6
Msa1425790 MtrunA17_Chr6g0451501 57.377 61 26 0 55 115 102 162 3.38e-17 72.4
Msa1425790 MtrunA17_Chr6g0451491 59.677 62 24 1 55 115 69 130 3.67e-17 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425790 AT5G14920.1 66.129 62 21 0 54 115 214 275 2.04e-22 89.0
Msa1425790 AT4G09600.1 64.516 62 21 1 54 115 39 99 9.39e-22 82.8
Msa1425790 AT2G18420.1 62.903 62 22 1 54 115 34 94 8.00e-21 80.5
Msa1425790 AT2G18420.2 62.903 62 22 1 54 115 10 70 8.04e-21 79.7
Msa1425790 AT1G75750.1 57.576 66 27 1 50 115 34 98 1.09e-20 80.1
Msa1425790 AT1G75750.2 57.576 66 27 1 50 115 33 97 1.27e-20 79.7
Msa1425790 AT1G22690.1 58.065 62 25 1 54 115 59 119 6.00e-19 76.3
Msa1425790 AT1G22690.2 58.065 62 25 1 54 115 59 119 6.00e-19 76.3
Msa1425790 AT1G22690.3 58.065 62 25 1 54 115 59 119 6.00e-19 76.3
Msa1425790 AT4G09610.1 61.290 62 23 1 54 115 39 99 3.67e-13 60.8
Msa1425790 AT1G74670.1 31.858 113 65 2 3 115 1 101 2.44e-11 56.2

Find 46 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTAATATTGTTGATATT+TGG 0.191398 tig0025890:-62613 Msa1425790:three_prime_UTR
CATGCTCTCTTGCACAAATT+TGG 0.199596 tig0025890:+62996 None:intergenic
TACTAGTGTAGTTTAGTAAA+TGG 0.245869 tig0025890:-62793 Msa1425790:three_prime_UTR
GCCCATGGGCCTAATTAGTT+TGG 0.284816 tig0025890:-62842 Msa1425790:three_prime_UTR
GGGCTTTGATAAGGTCTCTA+AGG 0.305310 tig0025890:+62861 None:intergenic
TTACGCAAGCTTCTTGTCTT+CGG 0.310911 tig0025890:-63671 Msa1425790:CDS
GAAGAGAGCCCAAACTAATT+AGG 0.320634 tig0025890:+62833 None:intergenic
TACGCAAGCTTCTTGTCTTC+GGG 0.326759 tig0025890:-63670 Msa1425790:CDS
CACCTGGTACTGCCGGTAAT+AGG 0.335185 tig0025890:-62941 Msa1425790:CDS
TATGTTGTGGTAACTAACTA+TGG 0.368562 tig0025890:-62666 Msa1425790:three_prime_UTR
ACCTGGTACTGCCGGTAATA+GGG 0.401958 tig0025890:-62940 Msa1425790:CDS
CCCATGGGCCTAATTAGTTT+GGG 0.408002 tig0025890:-62841 Msa1425790:three_prime_UTR
TCCACAAAACTCCCTATTAC+CGG 0.431014 tig0025890:+62929 None:intergenic
TAGGCCCATGGGCTTTGATA+AGG 0.442762 tig0025890:+62852 None:intergenic
CAAGGTGCAGTGTGCATTCA+AGG 0.442762 tig0025890:-63019 Msa1425790:CDS
ACTAGTGTAGTTTAGTAAAT+GGG 0.467501 tig0025890:-62792 Msa1425790:three_prime_UTR
CAGACTGTGGAGGGCTATGC+AGG 0.492139 tig0025890:-63043 Msa1425790:CDS
ATTTACTAAACTACACTAGT+AGG 0.495839 tig0025890:+62795 None:intergenic
CTTGGTCTTGTTACCATGAG+TGG 0.515862 tig0025890:+62887 None:intergenic
ATCTGATCATGAGATAGAAA+AGG 0.540603 tig0025890:-63361 Msa1425790:CDS
TCCCTATTACCGGCAGTACC+AGG 0.543014 tig0025890:+62939 None:intergenic
AATGCATTTAACTGATAAGC+CGG 0.550151 tig0025890:-63325 Msa1425790:intron
GCCCAAACTAATTAGGCCCA+TGG 0.551582 tig0025890:+62840 None:intergenic
ATAAGGTCTCTAAGGGCACT+TGG 0.552905 tig0025890:+62869 None:intergenic
TGTGTCCCACCTGGTACTGC+CGG 0.553087 tig0025890:-62948 Msa1425790:CDS
GGCTTTGATAAGGTCTCTAA+GGG 0.558100 tig0025890:+62862 None:intergenic
CTTCAGCTTATTGTGCGAGA+CGG 0.558872 tig0025890:-63188 Msa1425790:intron
AGAGACCTTATCAAAGCCCA+TGG 0.565394 tig0025890:-62857 Msa1425790:three_prime_UTR
TACACTGATATGACCACTCA+TGG 0.567522 tig0025890:-62900 Msa1425790:CDS
TGTTAAACCTTTGTATTCGT+AGG 0.570058 tig0025890:-62713 Msa1425790:three_prime_UTR
CCCAAACTAATTAGGCCCAT+GGG 0.581285 tig0025890:+62841 None:intergenic
AGAAGGCTAATGCAAGACAT+AGG 0.585779 tig0025890:-63161 Msa1425790:intron
AGGTGCAAGTGTGTCCCACC+TGG 0.590839 tig0025890:-62957 Msa1425790:CDS
AATTTGTGCAAGAGAGCATG+TGG 0.594899 tig0025890:-62993 Msa1425790:CDS
GTGGAGGGCTATGCAGGTCA+AGG 0.600120 tig0025890:-63037 Msa1425790:CDS
TTGTGCGAGACGGAAACAGA+AGG 0.605905 tig0025890:-63178 Msa1425790:CDS
TCAAAATCCTACGAATACAA+AGG 0.641840 tig0025890:+62706 None:intergenic
CATGTGGGACTTGCTGTGTG+AGG 0.647718 tig0025890:-62977 Msa1425790:CDS
TACAAGTTAGTACCTTAGAG+AGG 0.650629 tig0025890:+63630 None:intergenic
CTTGCGTAATGCCATTAGAG+AGG 0.657310 tig0025890:+63685 None:intergenic
GAGACCTTATCAAAGCCCAT+GGG 0.661282 tig0025890:-62856 Msa1425790:three_prime_UTR
CTACACTAGTAGGTACTACG+TGG 0.678386 tig0025890:+62805 None:intergenic
TACACTAGTAGGTACTACGT+GGG 0.679336 tig0025890:+62806 None:intergenic
CTATTACCGGCAGTACCAGG+TGG 0.706350 tig0025890:+62942 None:intergenic
TATTACCGGCAGTACCAGGT+GGG 0.719553 tig0025890:+62943 None:intergenic
ATTTGTGCAAGAGAGCATGT+GGG 0.729137 tig0025890:-62992 Msa1425790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATATTTAGTTTTATTTTT+TGG + tig0025890:63199-63218 None:intergenic 10.0%
!!! ACAAATTAAGATTTTTTATA+AGG - tig0025890:63232-63251 Msa1425790:intron 10.0%
!! TTTGAATGAAAAAAAATAAA+AGG - tig0025890:63569-63588 Msa1425790:intron 10.0%
!!! GTATATTTAGTTTTATTTTT+TGG + tig0025890:63199-63218 None:intergenic 10.0%
!!! ACAAATTAAGATTTTTTATA+AGG - tig0025890:63232-63251 Msa1425790:intron 10.0%
!! TTTGAATGAAAAAAAATAAA+AGG - tig0025890:63569-63588 Msa1425790:intron 10.0%
!! GTTCTATTTAAGTATAAAAA+AGG + tig0025890:63089-63108 None:intergenic 15.0%
!! ATAAGCATTTAACATATATT+AGG + tig0025890:63111-63130 None:intergenic 15.0%
!! GTTCTATTTAAGTATAAAAA+AGG + tig0025890:63089-63108 None:intergenic 15.0%
!! ATAAGCATTTAACATATATT+AGG + tig0025890:63111-63130 None:intergenic 15.0%
!!! TTTAAAATTTTCCTCTCTAA+TGG - tig0025890:62634-62653 Msa1425790:three_prime_UTR 20.0%
!! TTTCAACCAATAACTTAAAA+TGG + tig0025890:62808-62827 None:intergenic 20.0%
!! GAAAGTAAAAAAATGAATAC+CGG + tig0025890:63027-63046 None:intergenic 20.0%
!!! TCATTTTTTTACTTTCTTTC+TGG - tig0025890:63031-63050 Msa1425790:CDS 20.0%
!! GAATGAAAAAAAATAAAAGG+AGG - tig0025890:63572-63591 Msa1425790:intron 20.0%
!! CGTTTAATATTGTTGATATT+TGG - tig0025890:63717-63736 Msa1425790:five_prime_UTR 20.0%
!!! TTTAAAATTTTCCTCTCTAA+TGG - tig0025890:62634-62653 Msa1425790:three_prime_UTR 20.0%
!! TTTCAACCAATAACTTAAAA+TGG + tig0025890:62808-62827 None:intergenic 20.0%
!! GAAAGTAAAAAAATGAATAC+CGG + tig0025890:63027-63046 None:intergenic 20.0%
!!! TCATTTTTTTACTTTCTTTC+TGG - tig0025890:63031-63050 Msa1425790:CDS 20.0%
!! GAATGAAAAAAAATAAAAGG+AGG - tig0025890:63572-63591 Msa1425790:intron 20.0%
! AATGTTCAGTATAAGATGAA+AGG + tig0025890:62730-62749 None:intergenic 25.0%
!!! TTTGGACCATTTTAAGTTAT+TGG - tig0025890:62799-62818 Msa1425790:three_prime_UTR 25.0%
!! ATAAAAAAGGTGAAGTACTT+TGG + tig0025890:63076-63095 None:intergenic 25.0%
! ATTTACTAAACTACACTAGT+AGG + tig0025890:63538-63557 None:intergenic 25.0%
! TACTAGTGTAGTTTAGTAAA+TGG - tig0025890:63537-63556 Msa1425790:intron 25.0%
! ACTAGTGTAGTTTAGTAAAT+GGG - tig0025890:63538-63557 Msa1425790:intron 25.0%
! AATGTTCAGTATAAGATGAA+AGG + tig0025890:62730-62749 None:intergenic 25.0%
!!! TTTGGACCATTTTAAGTTAT+TGG - tig0025890:62799-62818 Msa1425790:three_prime_UTR 25.0%
!! ATAAAAAAGGTGAAGTACTT+TGG + tig0025890:63076-63095 None:intergenic 25.0%
! ATTTACTAAACTACACTAGT+AGG + tig0025890:63538-63557 None:intergenic 25.0%
! TACTAGTGTAGTTTAGTAAA+TGG - tig0025890:63537-63556 Msa1425790:intron 25.0%
! ACTAGTGTAGTTTAGTAAAT+GGG - tig0025890:63538-63557 Msa1425790:intron 25.0%
ATCTGATCATGAGATAGAAA+AGG - tig0025890:62969-62988 Msa1425790:CDS 30.0%
AATGCATTTAACTGATAAGC+CGG - tig0025890:63005-63024 Msa1425790:CDS 30.0%
TGTTAAACCTTTGTATTCGT+AGG - tig0025890:63617-63636 Msa1425790:intron 30.0%
TCAAAATCCTACGAATACAA+AGG + tig0025890:63627-63646 None:intergenic 30.0%
!! GTAGGATTTTGATGTATTCT+CGG - tig0025890:63635-63654 Msa1425790:intron 30.0%
TATGTTGTGGTAACTAACTA+TGG - tig0025890:63664-63683 Msa1425790:CDS 30.0%
ATCTGATCATGAGATAGAAA+AGG - tig0025890:62969-62988 Msa1425790:CDS 30.0%
AATGCATTTAACTGATAAGC+CGG - tig0025890:63005-63024 Msa1425790:CDS 30.0%
TGTTAAACCTTTGTATTCGT+AGG - tig0025890:63617-63636 Msa1425790:intron 30.0%
TCAAAATCCTACGAATACAA+AGG + tig0025890:63627-63646 None:intergenic 30.0%
!! GTAGGATTTTGATGTATTCT+CGG - tig0025890:63635-63654 Msa1425790:intron 30.0%
TATGTTGTGGTAACTAACTA+TGG - tig0025890:63664-63683 Msa1425790:CDS 30.0%
TACAAGTTAGTACCTTAGAG+AGG + tig0025890:62703-62722 None:intergenic 35.0%
GTTCAGTATAAGATGAAAGG+TGG + tig0025890:62727-62746 None:intergenic 35.0%
! GTGTTTTGTCAATATCATGC+AGG - tig0025890:62942-62961 Msa1425790:CDS 35.0%
! TTCTCGGTTTTTGTATGTTG+TGG - tig0025890:63651-63670 Msa1425790:CDS 35.0%
TACAAGTTAGTACCTTAGAG+AGG + tig0025890:62703-62722 None:intergenic 35.0%
GTTCAGTATAAGATGAAAGG+TGG + tig0025890:62727-62746 None:intergenic 35.0%
! GTGTTTTGTCAATATCATGC+AGG - tig0025890:62942-62961 Msa1425790:CDS 35.0%
! TTCTCGGTTTTTGTATGTTG+TGG - tig0025890:63651-63670 Msa1425790:CDS 35.0%
TTACGCAAGCTTCTTGTCTT+CGG - tig0025890:62659-62678 Msa1425790:three_prime_UTR 40.0%
AGAAGGCTAATGCAAGACAT+AGG - tig0025890:63169-63188 Msa1425790:CDS 40.0%
! GATCAATTTTGTGCAGACTG+TGG - tig0025890:63274-63293 Msa1425790:intron 40.0%
! AATTTTGTGCAGACTGTGGA+GGG - tig0025890:63278-63297 Msa1425790:intron 40.0%
CATGCTCTCTTGCACAAATT+TGG + tig0025890:63337-63356 None:intergenic 40.0%
! AATTTGTGCAAGAGAGCATG+TGG - tig0025890:63337-63356 Msa1425790:CDS 40.0%
! ATTTGTGCAAGAGAGCATGT+GGG - tig0025890:63338-63357 Msa1425790:CDS 40.0%
TCCACAAAACTCCCTATTAC+CGG + tig0025890:63404-63423 None:intergenic 40.0%
TACACTGATATGACCACTCA+TGG - tig0025890:63430-63449 Msa1425790:intron 40.0%
! GGCTTTGATAAGGTCTCTAA+GGG + tig0025890:63471-63490 None:intergenic 40.0%
GAAGAGAGCCCAAACTAATT+AGG + tig0025890:63500-63519 None:intergenic 40.0%
TACACTAGTAGGTACTACGT+GGG + tig0025890:63527-63546 None:intergenic 40.0%
TTACGCAAGCTTCTTGTCTT+CGG - tig0025890:62659-62678 Msa1425790:three_prime_UTR 40.0%
AGAAGGCTAATGCAAGACAT+AGG - tig0025890:63169-63188 Msa1425790:CDS 40.0%
! GATCAATTTTGTGCAGACTG+TGG - tig0025890:63274-63293 Msa1425790:intron 40.0%
! AATTTTGTGCAGACTGTGGA+GGG - tig0025890:63278-63297 Msa1425790:intron 40.0%
CATGCTCTCTTGCACAAATT+TGG + tig0025890:63337-63356 None:intergenic 40.0%
! AATTTGTGCAAGAGAGCATG+TGG - tig0025890:63337-63356 Msa1425790:CDS 40.0%
! ATTTGTGCAAGAGAGCATGT+GGG - tig0025890:63338-63357 Msa1425790:CDS 40.0%
TCCACAAAACTCCCTATTAC+CGG + tig0025890:63404-63423 None:intergenic 40.0%
TACACTGATATGACCACTCA+TGG - tig0025890:63430-63449 Msa1425790:intron 40.0%
! GGCTTTGATAAGGTCTCTAA+GGG + tig0025890:63471-63490 None:intergenic 40.0%
GAAGAGAGCCCAAACTAATT+AGG + tig0025890:63500-63519 None:intergenic 40.0%
TACACTAGTAGGTACTACGT+GGG + tig0025890:63527-63546 None:intergenic 40.0%
CTTGCGTAATGCCATTAGAG+AGG + tig0025890:62648-62667 None:intergenic 45.0%
TACGCAAGCTTCTTGTCTTC+GGG - tig0025890:62660-62679 Msa1425790:three_prime_UTR 45.0%
! GCTTTTAGTGTGCCTCTCTA+AGG - tig0025890:62688-62707 Msa1425790:three_prime_UTR 45.0%
AAGCCCTTGGTTTATGTCGT+GGG - tig0025890:62772-62791 Msa1425790:three_prime_UTR 45.0%
!! GTTTATGTCGTGGGGTGTTT+TGG - tig0025890:62781-62800 Msa1425790:three_prime_UTR 45.0%
CTTCAGCTTATTGTGCGAGA+CGG - tig0025890:63142-63161 Msa1425790:intron 45.0%
! CAATTTTGTGCAGACTGTGG+AGG - tig0025890:63277-63296 Msa1425790:intron 45.0%
!! CTTGGTCTTGTTACCATGAG+TGG + tig0025890:63446-63465 None:intergenic 45.0%
!! ATAAGGTCTCTAAGGGCACT+TGG + tig0025890:63464-63483 None:intergenic 45.0%
! GGGCTTTGATAAGGTCTCTA+AGG + tig0025890:63472-63491 None:intergenic 45.0%
AGAGACCTTATCAAAGCCCA+TGG - tig0025890:63473-63492 Msa1425790:intron 45.0%
GAGACCTTATCAAAGCCCAT+GGG - tig0025890:63474-63493 Msa1425790:intron 45.0%
CCCAAACTAATTAGGCCCAT+GGG + tig0025890:63492-63511 None:intergenic 45.0%
! CCCATGGGCCTAATTAGTTT+GGG - tig0025890:63489-63508 Msa1425790:intron 45.0%
CTACACTAGTAGGTACTACG+TGG + tig0025890:63528-63547 None:intergenic 45.0%
CTTGCGTAATGCCATTAGAG+AGG + tig0025890:62648-62667 None:intergenic 45.0%
TACGCAAGCTTCTTGTCTTC+GGG - tig0025890:62660-62679 Msa1425790:three_prime_UTR 45.0%
! GCTTTTAGTGTGCCTCTCTA+AGG - tig0025890:62688-62707 Msa1425790:three_prime_UTR 45.0%
AAGCCCTTGGTTTATGTCGT+GGG - tig0025890:62772-62791 Msa1425790:three_prime_UTR 45.0%
!! GTTTATGTCGTGGGGTGTTT+TGG - tig0025890:62781-62800 Msa1425790:three_prime_UTR 45.0%
CTTCAGCTTATTGTGCGAGA+CGG - tig0025890:63142-63161 Msa1425790:intron 45.0%
! CAATTTTGTGCAGACTGTGG+AGG - tig0025890:63277-63296 Msa1425790:intron 45.0%
!! CTTGGTCTTGTTACCATGAG+TGG + tig0025890:63446-63465 None:intergenic 45.0%
!! ATAAGGTCTCTAAGGGCACT+TGG + tig0025890:63464-63483 None:intergenic 45.0%
! GGGCTTTGATAAGGTCTCTA+AGG + tig0025890:63472-63491 None:intergenic 45.0%
AGAGACCTTATCAAAGCCCA+TGG - tig0025890:63473-63492 Msa1425790:intron 45.0%
GAGACCTTATCAAAGCCCAT+GGG - tig0025890:63474-63493 Msa1425790:intron 45.0%
CCCAAACTAATTAGGCCCAT+GGG + tig0025890:63492-63511 None:intergenic 45.0%
! CCCATGGGCCTAATTAGTTT+GGG - tig0025890:63489-63508 Msa1425790:intron 45.0%
CTACACTAGTAGGTACTACG+TGG + tig0025890:63528-63547 None:intergenic 45.0%
ACTGCTCTGTTTCAAGCCCT+TGG - tig0025890:62759-62778 Msa1425790:three_prime_UTR 50.0%
CAAGCCCTTGGTTTATGTCG+TGG - tig0025890:62771-62790 Msa1425790:three_prime_UTR 50.0%
AGCCCTTGGTTTATGTCGTG+GGG - tig0025890:62773-62792 Msa1425790:three_prime_UTR 50.0%
CACCCCACGACATAAACCAA+GGG + tig0025890:62778-62797 None:intergenic 50.0%
ACACCCCACGACATAAACCA+AGG + tig0025890:62779-62798 None:intergenic 50.0%
TTGTGCGAGACGGAAACAGA+AGG - tig0025890:63152-63171 Msa1425790:intron 50.0%
CAAGGTGCAGTGTGCATTCA+AGG - tig0025890:63311-63330 Msa1425790:intron 50.0%
TATTACCGGCAGTACCAGGT+GGG + tig0025890:63390-63409 None:intergenic 50.0%
ACCTGGTACTGCCGGTAATA+GGG - tig0025890:63390-63409 Msa1425790:intron 50.0%
! GCCGGTAATAGGGAGTTTTG+TGG - tig0025890:63400-63419 Msa1425790:intron 50.0%
! TAGGCCCATGGGCTTTGATA+AGG + tig0025890:63481-63500 None:intergenic 50.0%
GCCCATGGGCCTAATTAGTT+TGG - tig0025890:63488-63507 Msa1425790:intron 50.0%
GCCCAAACTAATTAGGCCCA+TGG + tig0025890:63493-63512 None:intergenic 50.0%
ACTGCTCTGTTTCAAGCCCT+TGG - tig0025890:62759-62778 Msa1425790:three_prime_UTR 50.0%
CAAGCCCTTGGTTTATGTCG+TGG - tig0025890:62771-62790 Msa1425790:three_prime_UTR 50.0%
AGCCCTTGGTTTATGTCGTG+GGG - tig0025890:62773-62792 Msa1425790:three_prime_UTR 50.0%
CACCCCACGACATAAACCAA+GGG + tig0025890:62778-62797 None:intergenic 50.0%
ACACCCCACGACATAAACCA+AGG + tig0025890:62779-62798 None:intergenic 50.0%
TTGTGCGAGACGGAAACAGA+AGG - tig0025890:63152-63171 Msa1425790:intron 50.0%
CAAGGTGCAGTGTGCATTCA+AGG - tig0025890:63311-63330 Msa1425790:intron 50.0%
TATTACCGGCAGTACCAGGT+GGG + tig0025890:63390-63409 None:intergenic 50.0%
ACCTGGTACTGCCGGTAATA+GGG - tig0025890:63390-63409 Msa1425790:intron 50.0%
! GCCGGTAATAGGGAGTTTTG+TGG - tig0025890:63400-63419 Msa1425790:intron 50.0%
! TAGGCCCATGGGCTTTGATA+AGG + tig0025890:63481-63500 None:intergenic 50.0%
GCCCATGGGCCTAATTAGTT+TGG - tig0025890:63488-63507 Msa1425790:intron 50.0%
GCCCAAACTAATTAGGCCCA+TGG + tig0025890:63493-63512 None:intergenic 50.0%
!! CATGTGGGACTTGCTGTGTG+AGG - tig0025890:63353-63372 Msa1425790:CDS 55.0%
CTATTACCGGCAGTACCAGG+TGG + tig0025890:63391-63410 None:intergenic 55.0%
CACCTGGTACTGCCGGTAAT+AGG - tig0025890:63389-63408 Msa1425790:intron 55.0%
TCCCTATTACCGGCAGTACC+AGG + tig0025890:63394-63413 None:intergenic 55.0%
!! CATGTGGGACTTGCTGTGTG+AGG - tig0025890:63353-63372 Msa1425790:CDS 55.0%
CTATTACCGGCAGTACCAGG+TGG + tig0025890:63391-63410 None:intergenic 55.0%
CACCTGGTACTGCCGGTAAT+AGG - tig0025890:63389-63408 Msa1425790:intron 55.0%
TCCCTATTACCGGCAGTACC+AGG + tig0025890:63394-63413 None:intergenic 55.0%
CAGACTGTGGAGGGCTATGC+AGG - tig0025890:63287-63306 Msa1425790:intron 60.0%
GTGGAGGGCTATGCAGGTCA+AGG - tig0025890:63293-63312 Msa1425790:intron 60.0%
AGGTGCAAGTGTGTCCCACC+TGG - tig0025890:63373-63392 Msa1425790:intron 60.0%
TGTGTCCCACCTGGTACTGC+CGG - tig0025890:63382-63401 Msa1425790:intron 60.0%
CAGACTGTGGAGGGCTATGC+AGG - tig0025890:63287-63306 Msa1425790:intron 60.0%
GTGGAGGGCTATGCAGGTCA+AGG - tig0025890:63293-63312 Msa1425790:intron 60.0%
AGGTGCAAGTGTGTCCCACC+TGG - tig0025890:63373-63392 Msa1425790:intron 60.0%
TGTGTCCCACCTGGTACTGC+CGG - tig0025890:63382-63401 Msa1425790:intron 60.0%
Chromosome Type Strat End Strand Name
tig0025890 gene 62613 63739 62613 ID=Msa1425790;Name=Msa1425790
tig0025890 mRNA 62613 63739 62613 ID=Msa1425790-mRNA-1;Parent=Msa1425790;Name=Msa1425790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=40|1|1|1|1|1|4|265|115
tig0025890 exon 62613 63062 62613 ID=Msa1425790-mRNA-1:exon:4461;Parent=Msa1425790-mRNA-1
tig0025890 exon 63162 63204 63162 ID=Msa1425790-mRNA-1:exon:4460;Parent=Msa1425790-mRNA-1
tig0025890 exon 63326 63388 63326 ID=Msa1425790-mRNA-1:exon:4459;Parent=Msa1425790-mRNA-1
tig0025890 exon 63643 63739 63643 ID=Msa1425790-mRNA-1:exon:4458;Parent=Msa1425790-mRNA-1
tig0025890 five_prime_UTR 63700 63739 63700 ID=Msa1425790-mRNA-1:five_prime_utr;Parent=Msa1425790-mRNA-1
tig0025890 CDS 63643 63699 63643 ID=Msa1425790-mRNA-1:cds;Parent=Msa1425790-mRNA-1
tig0025890 CDS 63326 63388 63326 ID=Msa1425790-mRNA-1:cds;Parent=Msa1425790-mRNA-1
tig0025890 CDS 63162 63204 63162 ID=Msa1425790-mRNA-1:cds;Parent=Msa1425790-mRNA-1
tig0025890 CDS 62878 63062 62878 ID=Msa1425790-mRNA-1:cds;Parent=Msa1425790-mRNA-1
tig0025890 three_prime_UTR 62613 62877 62613 ID=Msa1425790-mRNA-1:three_prime_utr;Parent=Msa1425790-mRNA-1
Gene Sequence

>Msa1425790

ATGGCATTACGCAAGCTTCTTGTCTTCGGGTTGTTGCTTTTAGTGTGCCTCTCTAAGGTTTCATCTGATCATGAGATAGAAAAGGAAGAAGATGAAGAAATGCATTTAACTGATAAGCCGCTTATTGTGCGAGACGGAAACAGAAGGCTAATGCAAGACATAGACTGTGGAGGGCTATGCAGGTCAAGGTGCAGTGTGCATTCAAGGCCAAATTTGTGCAAGAGAGCATGTGGGACTTGCTGTGTGAGGTGCAAGTGTGTCCCACCTGGTACTGCCGGTAATAGGGAGTTTTGTGGAGCTTGTTACACTGATATGACCACTCATGGTAACAAGACCAAGTGCCCTTAG
Protein sequence

>Msa1425790

MALRKLLVFGLLLLVCLSKVSSDHEIEKEEDEEMHLTDKPLIVRDGNRRLMQDIDCGGLCRSRCSVHSRPNLCKRACGTCCVRCKCVPPGTAGNREFCGACYTDMTTHGNKTKCP*